RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8546
(177 letters)
>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET:
ARG HEM; 3.20A {Geobacillus stearothermophilus}
Length = 375
Score = 119 bits (299), Expect = 9e-33
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 34/104 (32%)
Query: 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICE--------------------- 39
M + GG+++ AAPFNGWYM TEIG R+ D RYN+
Sbjct: 226 MCLEIGGIRYMAAPFNGWYMGTEIGARNFADDYRYNMLPKVASCMGLDTNSNASLWKDKA 285
Query: 40 -------------NRNTTIVDHHSAAEQFMKHYENEQRLRNGCP 70
+IVDHH+AA QF + E+
Sbjct: 286 LVELNIAVLYSYKKAGVSIVDHHTAARQFQLFEQQEKAAGRHVT 329
Score = 50.3 bits (120), Expect = 5e-08
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 69 CPFNGWYMSTEIGCRDLCDTKR 90
PFNGWYM TEIG R+ D R
Sbjct: 238 APFNGWYMGTEIGARNFADDYR 259
>1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA,
seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A
{Staphylococcus aureus} SCOP: d.174.1.1
Length = 347
Score = 118 bits (297), Expect = 1e-32
Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 34/104 (32%)
Query: 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN-------------------- 40
M GG+ + APFNGWYM TEIG R+ D RYN+ E
Sbjct: 209 MDLKIGGIVYPTAPFNGWYMVTEIGVRNFIDDYRYNLLEKVADAFEFDTLKNNSFNKDRA 268
Query: 41 --------------RNTTIVDHHSAAEQFMKHYENEQRLRNGCP 70
+IVDH +AA+QF NE +
Sbjct: 269 LVELNYAVYHSFKKEGVSIVDHLTAAKQFELFERNEAQQGRQVT 312
Score = 49.9 bits (119), Expect = 7e-08
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 69 CPFNGWYMSTEIGCRDLCDTKR 90
PFNGWYM TEIG R+ D R
Sbjct: 221 APFNGWYMVTEIGVRNFIDDYR 242
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn
oxidoreductase, oxidoreductase-oxidoreductase inhibitor
COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} PDB:
2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A*
3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A*
3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Length = 422
Score = 119 bits (299), Expect = 2e-32
Identities = 45/104 (43%), Positives = 52/104 (50%), Gaps = 34/104 (32%)
Query: 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICE--------------------- 39
M+ + GGL+F+A PF+GWYM TEIG RD CD RYNI E
Sbjct: 274 MLLEIGGLEFSACPFSGWYMGTEIGVRDYCDNSRYNILEEVAKKMDLDMRKTSSLWKDQA 333
Query: 40 -------------NRNTTIVDHHSAAEQFMKHYENEQRLRNGCP 70
+ TIVDHHSA E F+KH ENE R R GCP
Sbjct: 334 LVEINIAVLYSFQSDKVTIVDHHSATESFIKHMENEYRCRGGCP 377
Score = 49.5 bits (118), Expect = 1e-07
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 69 CPFNGWYMSTEIGCRDLCDTKR 90
CPF+GWYM TEIG RD CD R
Sbjct: 286 CPFSGWYMGTEIGVRDYCDNSR 307
>1m7v_A Nitric oxide synthase; pterin oxygenase, bacteria, heme,
oxidoreductase; HET: ARG HEM THG; 1.95A {Bacillus
subtilis} SCOP: d.174.1.1 PDB: 2fbz_X* 2fc1_A* 1m7z_A*
2fc2_A* 2an0_A* 2amo_A* 2an2_A*
Length = 363
Score = 118 bits (296), Expect = 2e-32
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 34/104 (32%)
Query: 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICE--------------------- 39
M + GG+ + AAPFNGWYM TEIG R+L D KRY+ +
Sbjct: 221 MKLEVGGIHYNAAPFNGWYMGTEIGARNLADEKRYDKLKKVASVIGISTNYNTDLWKDQA 280
Query: 40 -------------NRNTTIVDHHSAAEQFMKHYENEQRLRNGCP 70
+ +IVDHH+AA QF + E E+
Sbjct: 281 LVELNKAVLYSYKKQGVSIVDHHTAASQFKRFEEQEEEAGRKLT 324
Score = 49.1 bits (117), Expect = 1e-07
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 69 CPFNGWYMSTEIGCRDLCDTKR 90
PFNGWYM TEIG R+L D KR
Sbjct: 233 APFNGWYMGTEIGARNLADEKR 254
>2ort_A Nitric oxide synthase, inducible; L-arginine monooxygenase, heme,
dimerization, inhibitor, NOS, oxidoreductase; HET: HEM
342; 1.87A {Mus musculus} PDB: 1dd7_A* 2oro_A* 2orq_A*
2orr_A* 2ors_A* 2orp_A* 1nos_A* 1noc_A* 2nos_A* 1df1_A*
1nod_A* 2nod_A* 3nod_A* 3nw2_A* 2bhj_A* 1dwv_A* 1dww_A*
1dwx_A* 1n2n_A* 1qw4_A* ...
Length = 389
Score = 118 bits (297), Expect = 2e-32
Identities = 46/104 (44%), Positives = 55/104 (52%), Gaps = 34/104 (32%)
Query: 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICE--------------------- 39
M+ + GGL+F A PFNGWYM TEIG RD CDT+RYNI E
Sbjct: 236 MLLEVGGLEFPACPFNGWYMGTEIGVRDFCDTQRYNILEEVGRRMGLETHTLASLWKDRA 295
Query: 40 -------------NRNTTIVDHHSAAEQFMKHYENEQRLRNGCP 70
+N TI+DHH+A+E FMKH +NE R R GCP
Sbjct: 296 VTEINVAVLHSFQKQNVTIMDHHTASESFMKHMQNEYRARGGCP 339
Score = 49.1 bits (117), Expect = 1e-07
Identities = 18/22 (81%), Positives = 19/22 (86%)
Query: 69 CPFNGWYMSTEIGCRDLCDTKR 90
CPFNGWYM TEIG RD CDT+R
Sbjct: 248 CPFNGWYMGTEIGVRDFCDTQR 269
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold,
oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP:
d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A*
1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A*
1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A*
1nse_A* ...
Length = 444
Score = 118 bits (298), Expect = 3e-32
Identities = 45/104 (43%), Positives = 54/104 (51%), Gaps = 34/104 (32%)
Query: 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICE--------------------- 39
M+ + GGL+F+AAPF+GWYMSTEIG R+LCD RYNI E
Sbjct: 303 MLLEIGGLEFSAAPFSGWYMSTEIGTRNLCDPHRYNILEDVAVCMDLDTRTTSSLWKDKA 362
Query: 40 -------------NRNTTIVDHHSAAEQFMKHYENEQRLRNGCP 70
TIVDHH+A FMKH +NEQ+ R GCP
Sbjct: 363 AVEINLAVLHSFQLAKVTIVDHHAATVSFMKHLDNEQKARGGCP 406
Score = 49.9 bits (119), Expect = 9e-08
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 69 CPFNGWYMSTEIGCRDLCDTKR 90
PF+GWYMSTEIG R+LCD R
Sbjct: 315 APFSGWYMSTEIGTRNLCDPHR 336
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin,
oxido calmodulin-binding, FAD, FMN, iron, metal-binding,
NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus
musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A*
3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A*
3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A*
1m8h_A* 1m8i_A* 1m9t_A* ...
Length = 433
Score = 118 bits (296), Expect = 4e-32
Identities = 46/104 (44%), Positives = 55/104 (52%), Gaps = 34/104 (32%)
Query: 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICE--------------------- 39
M+ + GGL+F A PFNGWYM TEIG RD CDT+RYNI E
Sbjct: 284 MLLEVGGLEFPACPFNGWYMGTEIGVRDFCDTQRYNILEEVGRRMGLETHTLASLWKDRA 343
Query: 40 -------------NRNTTIVDHHSAAEQFMKHYENEQRLRNGCP 70
+N TI+DHH+A+E FMKH +NE R R GCP
Sbjct: 344 VTEINVAVLHSFQKQNVTIMDHHTASESFMKHMQNEYRARGGCP 387
Score = 49.1 bits (117), Expect = 1e-07
Identities = 18/22 (81%), Positives = 19/22 (86%)
Query: 69 CPFNGWYMSTEIGCRDLCDTKR 90
CPFNGWYM TEIG RD CDT+R
Sbjct: 296 CPFNGWYMGTEIGVRDFCDTQR 317
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase,
NOS, INOS, alternative splicing, calcium,
calmodulin-binding, FAD, FMN, heme, iron, metal-binding;
HET: FMN; 2.50A {Homo sapiens}
Length = 219
Score = 64.8 bits (158), Expect = 2e-13
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 119 KSELYAKKLGELAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKKLGELFGHAFH 176
+ E+ K L + AV F L + ++ R++ T+L+ATETGKSE A LG LF AF+
Sbjct: 14 RREIPLKVLVK-AVLFACMLMRKTMASRVRVTILFATETGKSEALAWDLGALFSCAFN 70
Score = 61.7 bits (150), Expect = 2e-12
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 90 RAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKKLGELAVKFTSKLFGRALSRRIKA 149
+AV F L + ++ R++ T+L+ATETGKSE A LG L S
Sbjct: 24 KAVLFACMLMRKTMASRVRVTILFATETGKSEALAWDLGALF------------SCAFNP 71
Query: 150 TVLYATETGKSELYAKKL 167
V+ + S L ++L
Sbjct: 72 KVVCMDKYRLSCLEEERL 89
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 57.9 bits (140), Expect = 2e-10
Identities = 26/41 (63%), Positives = 35/41 (85%)
Query: 136 SKLFGRALSRRIKATVLYATETGKSELYAKKLGELFGHAFH 176
+KL G+A+++R+KAT+LYATETGKS+ YAK L E+F HAF
Sbjct: 1 AKLMGQAMAKRVKATILYATETGKSQAYAKTLCEIFKHAFD 41
Score = 54.8 bits (132), Expect = 2e-09
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 96 SKLFGRALSRRIKATVLYATETGKSELYAKKLGELAVKFTSKLFGRALSRRIKATVLYAT 155
+KL G+A+++R+KAT+LYATETGKS+ YAK L E A +
Sbjct: 1 AKLMGQAMAKRVKATILYATETGKSQAYAKTLCE------------IFKHAFDAKAMSME 48
Query: 156 ETGKSELYAKKL 167
E L + L
Sbjct: 49 EYDIVHLEHEAL 60
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450
reductase, diflavin reductase, FAD, FMN-binding,
electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces
cerevisiae} PDB: 2bn4_A* 2bf4_A*
Length = 682
Score = 43.7 bits (103), Expect = 1e-05
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHAFH 176
VLYA++TG +E +AK + F+
Sbjct: 51 NYLVLYASQTGTAEGFAKAFSKELVAKFN 79
Score = 40.6 bits (95), Expect = 1e-04
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 87 DTKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKKLGELA 131
D + VLYA++TG +E +AK +
Sbjct: 30 DITAVSSGNRDIAQVVTENNKNYLVLYASQTGTAEGFAKAFSKEL 74
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler
syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET:
FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A*
1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A*
3fjo_A* 1b1c_A*
Length = 618
Score = 42.7 bits (101), Expect = 2e-05
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 88 TKRAVKFTSKLFGRALSRRIKATVLYATETGKSELYAKKLGELAVKF 134
R F K+ + R I V Y ++TG +E +A +L + A ++
Sbjct: 4 MVRESSFVEKM--KKTGRNI--IVFYGSQTGTAEEFANRLSKDAHRY 46
Score = 42.7 bits (101), Expect = 3e-05
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 131 AVKFTSKLFGRALSRRIKATVLYATETGKSELYAKKLG-ELFGHAFH 176
+ S + V Y ++TG +E +A +L + +
Sbjct: 3 HMVRESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMR 49
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 6e-04
Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 52/145 (35%)
Query: 63 QR--------LRNGCPFNGWYM--STEIGCRDLCDTKRAVKFTSKLFGRALSRRIKATVL 112
+R L PF+ + ++++ +DL K V F +K I+ V
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDL--VKNNVSFNAK--------DIQIPV- 459
Query: 113 YATETGK-----SELYAKKLG----------ELAVKFTSK---LFGR-------ALSRRI 147
Y T G S ++++ E +F + FG L+ R
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Query: 148 K----ATVLYAT--ETGKSELYAKK 166
K V+ A + + Y K
Sbjct: 520 KDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 31.6 bits (71), Expect = 0.14
Identities = 23/152 (15%), Positives = 44/152 (28%), Gaps = 54/152 (35%)
Query: 6 GGLQF--TAAPFNGWYM--STEIGCRDLCDTKRYNICENRNTTIVDHHSAAEQFM---KH 58
+F A+PF+ + ++++ +DL N + A+
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDL---------VKNNVSF-----NAKDIQIPVYD 461
Query: 59 YENEQRLRNGCPFNGWYMSTEIGCRDLCDT--------KRAVKFTSK---LFGR------ 101
+ LR +S I + D + +F + FG
Sbjct: 462 TFDGSDLRV--------LSGSIS-ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 102 -ALSRRIK----ATVLYAT--ETGKSELYAKK 126
L+ R K V+ A + + Y K
Sbjct: 513 GVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 31.2 bits (70), Expect = 0.19
Identities = 22/143 (15%), Positives = 45/143 (31%), Gaps = 41/143 (28%)
Query: 47 DHHSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGCRDLCDTKRAVK--FTSKLF-GRAL 103
D H+ A + ++ + K +K T+++ R
Sbjct: 100 DIHALAAKLLQENDTTLVKT----------------------KELIKNYITARIMAKRPF 137
Query: 104 SRRIKATVLYATETGKSELYA---------KKLGELAVKF-TSKLFGRALSRRIKATVLY 153
++ + + A G ++L A EL + T + L + A L
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS-AETLS 196
Query: 154 ATETGKSELYAKKLGELFGHAFH 176
E ++ L A+K +F +
Sbjct: 197 --ELIRTTLDAEK---VFTQGLN 214
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A
{Rhodobacter capsulatus}
Length = 182
Score = 36.5 bits (84), Expect = 0.002
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHAF 175
K + + ++TG + AK++ ++F
Sbjct: 3 KIGLFFGSDTGTTRKIAKQIKDMFDDEV 30
Score = 33.0 bits (75), Expect = 0.023
Identities = 5/24 (20%), Positives = 14/24 (58%)
Query: 108 KATVLYATETGKSELYAKKLGELA 131
K + + ++TG + AK++ ++
Sbjct: 3 KIGLFFGSDTGTTRKIAKQIKDMF 26
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus}
SCOP: c.23.5.1
Length = 173
Score = 36.0 bits (83), Expect = 0.002
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHAF 175
K + ++T TG + A +G+ G
Sbjct: 1 KIGIFFSTSTGNTTEVADFIGKTLGAKA 28
Score = 33.3 bits (76), Expect = 0.018
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 108 KATVLYATETGKSELYAKKLGE 129
K + ++T TG + A +G+
Sbjct: 1 KIGIFFSTSTGNTTEVADFIGK 22
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound
FMN, electron transport; HET: FMN; 2.25A {Azotobacter
vinelandii} SCOP: c.23.5.1
Length = 179
Score = 35.7 bits (82), Expect = 0.003
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHAFHS 177
K + + + TGK+ AK + + F S
Sbjct: 2 KIGLFFGSNTGKTRKVAKSIKKRFDDETMS 31
Score = 31.8 bits (72), Expect = 0.070
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 108 KATVLYATETGKSELYAKKLGE-LAVKFTSKLF 139
K + + + TGK+ AK + + + S
Sbjct: 2 KIGLFFGSNTGKTRKVAKSIKKRFDDETMSDAL 34
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component;
electron transport; HET: FMN; NMR {Escherichia coli}
SCOP: c.23.5.2
Length = 167
Score = 35.7 bits (83), Expect = 0.003
Identities = 7/45 (15%), Positives = 19/45 (42%), Gaps = 11/45 (24%)
Query: 108 KATVLYATETGKSELYAKKLGELAVKFTSKLFGRALSRRIKATVL 152
T++ A++TG + A+ L + L+ ++ ++
Sbjct: 11 GITIISASQTGNARRVAEALRD-----------DLLAAKLNVKLV 44
Score = 33.4 bits (77), Expect = 0.016
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 148 KATVLYATETGKSELYAKKLGE 169
T++ A++TG + A+ L +
Sbjct: 11 GITIISASQTGNARRVAEALRD 32
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET:
FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB:
1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A*
1czh_A* 1d03_A*
Length = 169
Score = 34.9 bits (80), Expect = 0.005
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHAF 175
K + Y T+TG ++ A+ + + FG
Sbjct: 2 KIGLFYGTQTGVTQTIAESIQQEFGGES 29
Score = 32.2 bits (73), Expect = 0.047
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 108 KATVLYATETGKSELYAKKLGELA 131
K + Y T+TG ++ A+ + +
Sbjct: 2 KIGLFYGTQTGVTQTIAESIQQEF 25
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport;
HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A*
1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A
2kqu_A 3esy_A* 3esz_A* 3esx_A*
Length = 169
Score = 34.1 bits (78), Expect = 0.010
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 148 KATVLYATETGKSELYAKKLGELFG 172
K + Y T+TGK+E A+ + + FG
Sbjct: 3 KIGLFYGTQTGKTESVAEIIRDEFG 27
Score = 31.4 bits (71), Expect = 0.10
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 108 KATVLYATETGKSELYAKKLGELA 131
K + Y T+TGK+E A+ + +
Sbjct: 3 KIGLFYGTQTGKTESVAEIIRDEF 26
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport
protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A*
1fue_A*
Length = 164
Score = 34.2 bits (78), Expect = 0.010
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHA 174
K + + T++G +E A+K+ + G+A
Sbjct: 3 KIGIFFGTDSGNAEAIAEKISKAIGNA 29
Score = 30.7 bits (69), Expect = 0.14
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 108 KATVLYATETGKSELYAKKLGE 129
K + + T++G +E A+K+ +
Sbjct: 3 KIGIFFGTDSGNAEAIAEKISK 24
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB;
1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Length = 175
Score = 33.7 bits (77), Expect = 0.013
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHA 174
+ + ++TG +E AK + + G
Sbjct: 2 ITGIFFGSDTGNTENIAKMIQKQLGKD 28
Score = 30.6 bits (69), Expect = 0.18
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 108 KATVLYATETGKSELYAKKLGE 129
+ + ++TG +E AK + +
Sbjct: 2 ITGIFFGSDTGNTENIAKMIQK 23
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase,
hemoprotein, flavoprotein, electron transfer,
oxidoreductase; HET: HEM FMN; 2.03A {Bacillus
megaterium} SCOP: c.23.5.1
Length = 191
Score = 33.5 bits (77), Expect = 0.021
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 11/45 (24%)
Query: 108 KATVLYATETGKSELYAKKLGELAVKFTSKLFGRALSRRIKATVL 152
VLY + G +E A+ L + A+S+ V
Sbjct: 23 PLLVLYGSNMGTAEGTARDLAD-----------IAMSKGFAPQVA 56
Score = 31.6 bits (72), Expect = 0.095
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 148 KATVLYATETGKSELYAKKLGE 169
VLY + G +E A+ L +
Sbjct: 23 PLLVLYGSNMGTAEGTARDLAD 44
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE,
anisotropic refinement, redox protein; HET: FMN; 1.30A
{Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A*
1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A*
1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A*
1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Length = 147
Score = 32.6 bits (75), Expect = 0.026
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 148 KATVLYATETGKSELYAKKLGELFG 172
KA ++Y + TG +E A+ +
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELA 26
Score = 32.2 bits (74), Expect = 0.040
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 108 KATVLYATETGKSELYAKKLGELA 131
KA ++Y + TG +E A+ +
Sbjct: 2 KALIVYGSTTGNTEYTAETIAREL 25
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold,
electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Length = 147
Score = 32.6 bits (75), Expect = 0.032
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 108 KATVLYATETGKSELYAKKLGELA 131
T++ + G +E A+ L E
Sbjct: 3 DITLISGSTLGGAEYVAEHLAEKL 26
Score = 31.0 bits (71), Expect = 0.099
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 148 KATVLYATETGKSELYAKKLGEL 170
T++ + G +E A+ L E
Sbjct: 3 DITLISGSTLGGAEYVAEHLAEK 25
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport,
flavoprotein, FMN, transport; HET: FMN; 2.00A
{Desulfovibrio desulfuricans} PDB: 3f6s_A* 3f90_A*
3kap_A* 3kaq_A*
Length = 148
Score = 32.2 bits (74), Expect = 0.039
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHAFHS 177
K +++ + TG +E A+KL EL H
Sbjct: 3 KVLIVFGSSTGNTESIAQKLEELIAAGGHE 32
Score = 31.1 bits (71), Expect = 0.094
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 108 KATVLYATETGKSELYAKKLGELA 131
K +++ + TG +E A+KL EL
Sbjct: 3 KVLIVFGSSTGNTESIAQKLEELI 26
>3k1q_F VP7: protector protein (outer shell); cryoem, bioinformatics,
structure-based refinement, macromolecular assembly,
GCRV virion; 4.50A {Grass carp reovirus}
Length = 276
Score = 27.6 bits (60), Expect = 2.4
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 21 STEIGCRDLCDTKRYNICENRNTTIVDHHSAAEQFMKHYENEQRL 65
+T + RY IC TT+ H + H + Q
Sbjct: 32 TTNFDHAEYVTCGRYTICAFCLTTLAPHANVKTIQDSHACSRQPN 76
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 26.9 bits (60), Expect = 4.1
Identities = 4/40 (10%), Positives = 11/40 (27%), Gaps = 5/40 (12%)
Query: 24 IGCR--DLCDTKRYNICENRN---TTIVDHHSAAEQFMKH 58
+ + + ++ + IV H +F
Sbjct: 91 PASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTS 130
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel),
jelly-roll barrel, immunoglobulin, beta supersandwich,
hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP:
b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A
1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A*
1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A*
3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ...
Length = 1023
Score = 27.1 bits (60), Expect = 4.1
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 14/70 (20%)
Query: 14 PFNGWYMSTEIGCRDLCDTKRYNICENRNTTIVDHHSAAEQFMKHYENEQRLRNGCPFNG 73
P +G M + +D+ K+ N R + HY N C G
Sbjct: 361 PLHGQVMDEQTMVQDILLMKQNNFNAVRCS--------------HYPNHPLWYTLCDRYG 406
Query: 74 WYMSTEIGCR 83
Y+ E
Sbjct: 407 LYVVDEANIE 416
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 26.4 bits (59), Expect = 4.9
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 24 IGCR--DLCDTKRYNICENRNTTIVDHHSAAEQFMKH 58
I C C T Y++C N VD +++
Sbjct: 91 IVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVV 127
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 26.4 bits (59), Expect = 5.4
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 24 IGCR--DLCDTKRYNICENRNTTIVDHHSAAEQFMKH 58
I C C R N+C N + +++
Sbjct: 109 ISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLV 145
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel,
hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1
b.18.1.5 b.30.5.1 c.1.8.3
Length = 1024
Score = 26.8 bits (59), Expect = 5.6
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 14/69 (20%)
Query: 14 PFNGWYMSTEIGCRDLCDTKRYNICENRNTTIVDHHSAAEQFMKHYENEQRLRNGCPFNG 73
P G DL KR+N+ R + HY RL + G
Sbjct: 340 PDRGRVFDEAGAREDLALMKRFNVNAIRTS--------------HYPPHPRLLDLADEMG 385
Query: 74 WYMSTEIGC 82
+++ E
Sbjct: 386 FWVILECDL 394
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.417
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,658,946
Number of extensions: 143757
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 66
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.5 bits)