RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8546
(177 letters)
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 421
Score = 129 bits (326), Expect = 7e-37
Identities = 46/104 (44%), Positives = 55/104 (52%), Gaps = 34/104 (32%)
Query: 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN-------------------- 40
M+ + GGL+F A PFNGWYM TEIG RD CDT+RYNI E
Sbjct: 273 MLLEVGGLEFPACPFNGWYMGTEIGVRDFCDTQRYNILEEVGRRMGLETHTLASLWKDRA 332
Query: 41 --------------RNTTIVDHHSAAEQFMKHYENEQRLRNGCP 70
+N TI+DHH+A+E FMKH +NE R R GCP
Sbjct: 333 VTEINVAVLHSFQKQNVTIMDHHTASESFMKHMQNEYRARGGCP 376
Score = 57.1 bits (138), Expect = 8e-11
Identities = 18/22 (81%), Positives = 19/22 (86%)
Query: 69 CPFNGWYMSTEIGCRDLCDTKR 90
CPFNGWYM TEIG RD CDT+R
Sbjct: 285 CPFNGWYMGTEIGVRDFCDTQR 306
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 418
Score = 129 bits (326), Expect = 8e-37
Identities = 45/104 (43%), Positives = 51/104 (49%), Gaps = 34/104 (32%)
Query: 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN-------------------- 40
M+ + GGL+F+A PF+GWYM TEIG RD CD RYNI E
Sbjct: 272 MLLEIGGLEFSACPFSGWYMGTEIGVRDYCDNSRYNILEEVAKKMDLDMRKTSSLWKDQA 331
Query: 41 --------------RNTTIVDHHSAAEQFMKHYENEQRLRNGCP 70
TIVDHHSA E F+KH ENE R R GCP
Sbjct: 332 LVEINIAVLYSFQSDKVTIVDHHSATESFIKHMENEYRCRGGCP 375
Score = 57.1 bits (138), Expect = 9e-11
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 69 CPFNGWYMSTEIGCRDLCDTKR 90
CPF+GWYM TEIG RD CD R
Sbjct: 284 CPFSGWYMGTEIGVRDYCDNSR 305
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Bacillus subtilis [TaxId: 1423]}
Length = 363
Score = 128 bits (323), Expect = 9e-37
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 34/104 (32%)
Query: 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN-------------------- 40
M + GG+ + AAPFNGWYM TEIG R+L D KRY+ +
Sbjct: 221 MKLEVGGIHYNAAPFNGWYMGTEIGARNLADEKRYDKLKKVASVIGISTNYNTDLWKDQA 280
Query: 41 --------------RNTTIVDHHSAAEQFMKHYENEQRLRNGCP 70
+ +IVDHH+AA QF + E E+
Sbjct: 281 LVELNKAVLYSYKKQGVSIVDHHTAASQFKRFEEQEEEAGRKLT 324
Score = 55.9 bits (135), Expect = 2e-10
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 69 CPFNGWYMSTEIGCRDLCDTKR 90
PFNGWYM TEIG R+L D KR
Sbjct: 233 APFNGWYMGTEIGARNLADEKR 254
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 416
Score = 129 bits (325), Expect = 1e-36
Identities = 46/104 (44%), Positives = 55/104 (52%), Gaps = 34/104 (32%)
Query: 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICEN-------------------- 40
M+ + GGL+F+AAPF+GWYMSTEIG RDLCD RYNI E+
Sbjct: 275 MLLEIGGLEFSAAPFSGWYMSTEIGTRDLCDPHRYNILEDVAVCMDLDTRTTSSLWKDKA 334
Query: 41 --------------RNTTIVDHHSAAEQFMKHYENEQRLRNGCP 70
TIVDHH+A FMKH +NEQ+ R GCP
Sbjct: 335 AVEINLAVLHSFQLAKVTIVDHHAATVSFMKHLDNEQKARGGCP 378
Score = 56.3 bits (136), Expect = 2e-10
Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 69 CPFNGWYMSTEIGCRDLCDTKR 90
PF+GWYMSTEIG RDLCD R
Sbjct: 287 APFSGWYMSTEIGTRDLCDPHR 308
>d1mjta_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Staphylococcus aureus [TaxId: 1280]}
Length = 346
Score = 125 bits (315), Expect = 9e-36
Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 34/104 (32%)
Query: 1 MMFDCGGLQFTAAPFNGWYMSTEIGCRDLCDTKRYNICE--------------------- 39
M GG+ + APFNGWYM TEIG R+ D RYN+ E
Sbjct: 208 MDLKIGGIVYPTAPFNGWYMVTEIGVRNFIDDYRYNLLEKVADAFEFDTLKNNSFNKDRA 267
Query: 40 -------------NRNTTIVDHHSAAEQFMKHYENEQRLRNGCP 70
+IVDH +AA+QF NE +
Sbjct: 268 LVELNYAVYHSFKKEGVSIVDHLTAAKQFELFERNEAQQGRQVT 311
Score = 53.2 bits (128), Expect = 2e-09
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 69 CPFNGWYMSTEIGCRDLCDTKR 90
PFNGWYM TEIG R+ D R
Sbjct: 220 APFNGWYMVTEIGVRNFIDDYR 241
>d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 202
Score = 47.2 bits (111), Expect = 1e-07
Identities = 22/33 (66%), Positives = 28/33 (84%)
Query: 144 SRRIKATVLYATETGKSELYAKKLGELFGHAFH 176
++R+KAT+LYATETGKS+ YAK L E+F HAF
Sbjct: 1 AKRVKATILYATETGKSQAYAKTLCEIFKHAFD 33
Score = 43.0 bits (100), Expect = 5e-06
Identities = 18/28 (64%), Positives = 24/28 (85%)
Query: 104 SRRIKATVLYATETGKSELYAKKLGELA 131
++R+KAT+LYATETGKS+ YAK L E+
Sbjct: 1 AKRVKATILYATETGKSQAYAKTLCEIF 28
>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii
[TaxId: 354]}
Length = 179
Score = 35.4 bits (81), Expect = 0.002
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHAFHS 177
K + + + TGK+ AK + + F S
Sbjct: 2 KIGLFFGSNTGKTRKVAKSIKKRFDDETMS 31
Score = 31.2 bits (70), Expect = 0.045
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 108 KATVLYATETGKSELYAKKLGELA 131
K + + + TGK+ AK + +
Sbjct: 2 KIGLFFGSNTGKTRKVAKSIKKRF 25
>d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]}
Length = 163
Score = 33.9 bits (77), Expect = 0.004
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHA 174
K + + T++G +E A+K+ + G+A
Sbjct: 2 KIGIFFGTDSGNAEAIAEKISKAIGNA 28
Score = 31.2 bits (70), Expect = 0.038
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 108 KATVLYATETGKSELYAKKLGELA 131
K + + T++G +E A+K+ +
Sbjct: 2 KIGIFFGTDSGNAEAIAEKISKAI 25
>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 177
Score = 33.9 bits (77), Expect = 0.004
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 108 KATVLYATETGKSELYAKKLGELAVKF 134
V Y ++TG +E +A +L + A ++
Sbjct: 17 NIIVFYGSQTGTAEEFANRLSKDAHRY 43
Score = 32.4 bits (73), Expect = 0.016
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 148 KATVLYATETGKSELYAKKLGE 169
V Y ++TG +E +A +L +
Sbjct: 17 NIIVFYGSQTGTAEEFANRLSK 38
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
Length = 173
Score = 33.9 bits (77), Expect = 0.004
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHAFHS 177
K + ++T TG + A +G+ G +
Sbjct: 1 KIGIFFSTSTGNTTEVADFIGKTLGAKADA 30
Score = 30.8 bits (69), Expect = 0.055
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 108 KATVLYATETGKSELYAKKLGELA 131
K + ++T TG + A +G+
Sbjct: 1 KIGIFFSTSTGNTTEVADFIGKTL 24
>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId:
881]}
Length = 147
Score = 33.6 bits (76), Expect = 0.005
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHAFHS 177
KA ++Y + TG +E A+ + A +
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAGYE 31
Score = 32.4 bits (73), Expect = 0.012
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 108 KATVLYATETGKSELYAKKLGELA 131
KA ++Y + TG +E A+ +
Sbjct: 2 KALIVYGSTTGNTEYTAETIAREL 25
>d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942
[TaxId: 1140]}
Length = 169
Score = 33.5 bits (76), Expect = 0.006
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHAFH 176
K + Y T+TG ++ A+ + + FG
Sbjct: 2 KIGLFYGTQTGVTQTIAESIQQEFGGESI 30
Score = 30.4 bits (68), Expect = 0.061
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 108 KATVLYATETGKSELYAKKLGELA 131
K + Y T+TG ++ A+ + +
Sbjct: 2 KIGLFYGTQTGVTQTIAESIQQEF 25
>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3
{Bacillus megaterium [TaxId: 1404]}
Length = 152
Score = 32.4 bits (73), Expect = 0.012
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 110 TVLYATETGKSELYAKKLGELA 131
VLY + G +E A+ L ++A
Sbjct: 5 LVLYGSNMGTAEGTARDLADIA 26
Score = 32.0 bits (72), Expect = 0.019
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 150 TVLYATETGKSELYAKKLGELFG 172
VLY + G +E A+ L ++
Sbjct: 5 LVLYGSNMGTAEGTARDLADIAM 27
>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120
[TaxId: 1163]}
Length = 169
Score = 32.4 bits (73), Expect = 0.016
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHA 174
K + Y T+TGK+E A+ + + FG+
Sbjct: 3 KIGLFYGTQTGKTESVAEIIRDEFGND 29
Score = 29.7 bits (66), Expect = 0.11
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 108 KATVLYATETGKSELYAKKLGELA 131
K + Y T+TGK+E A+ + +
Sbjct: 3 KIGLFYGTQTGKTESVAEIIRDEF 26
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 146
Score = 31.2 bits (70), Expect = 0.034
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 110 TVLYATETGKSELYAKKLGELA 131
T++ A++TG + A+ L +
Sbjct: 2 TIISASQTGNARRVAEALRDDL 23
Score = 30.9 bits (69), Expect = 0.046
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 150 TVLYATETGKSELYAKKLGELFGHA 174
T++ A++TG + A+ L + A
Sbjct: 2 TIISASQTGNARRVAEALRDDLLAA 26
>d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]}
Length = 175
Score = 31.2 bits (70), Expect = 0.035
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHA 174
+ + ++TG +E AK + + G
Sbjct: 2 ITGIFFGSDTGNTENIAKMIQKQLGKD 28
Score = 28.1 bits (62), Expect = 0.36
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 108 KATVLYATETGKSELYAKKLGELA 131
+ + ++TG +E AK + +
Sbjct: 2 ITGIFFGSDTGNTENIAKMIQKQL 25
>d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId:
1423]}
Length = 135
Score = 28.0 bits (62), Expect = 0.41
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 150 TVLYATETGKSELYAKKLGELFGHAFH 176
+++ ++TG + + K G
Sbjct: 12 QIIFDSKTGNVQRFVNKTGFQQIRKVD 38
Score = 27.6 bits (61), Expect = 0.54
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 110 TVLYATETGKSELYAKKLG 128
+++ ++TG + + K G
Sbjct: 12 QIIFDSKTGNVQRFVNKTG 30
>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId:
1520]}
Length = 138
Score = 26.6 bits (58), Expect = 1.2
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 150 TVLYATETGKSELYAKKLGELFGHAFH 176
++Y + TG +E A+ + + +
Sbjct: 2 KIVYWSGTGNTEKMAELIAKGIIESGK 28
Score = 26.2 bits (57), Expect = 1.5
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 110 TVLYATETGKSELYAKKLGELA 131
++Y + TG +E A+ + +
Sbjct: 2 KIVYWSGTGNTEKMAELIAKGI 23
>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId:
907]}
Length = 137
Score = 26.6 bits (58), Expect = 1.3
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 150 TVLYATETGKSELYAKKLGELFGHAFH 176
++Y + TG +E A ++ A
Sbjct: 3 EIVYWSGTGNTEAMANEIEAAVKAAGA 29
Score = 25.4 bits (55), Expect = 3.3
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 110 TVLYATETGKSELYAKKLGELA 131
++Y + TG +E A ++
Sbjct: 3 EIVYWSGTGNTEAMANEIEAAV 24
>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur
(beta) subunit {Escherichia coli [TaxId: 562]}
Length = 244
Score = 26.0 bits (56), Expect = 2.4
Identities = 11/62 (17%), Positives = 18/62 (29%)
Query: 26 CRDLCDTKRYNICENRNTTIVDHHSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGCRDL 85
C D C + I + + ++ GCPFN ++ E
Sbjct: 99 CMHCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYK 158
Query: 86 CD 87
C
Sbjct: 159 CT 160
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 148
Score = 25.2 bits (54), Expect = 3.3
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 148 KATVLYATETGKSELYAKKLGELFGHA 174
K TV+Y + G E KK +
Sbjct: 5 KVTVIYDSMYGFVENVMKKAIDSLKEK 31
Score = 25.2 bits (54), Expect = 3.7
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 108 KATVLYATETGKSELYAKKLGELA 131
K TV+Y + G E KK +
Sbjct: 5 KVTVIYDSMYGFVENVMKKAIDSL 28
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 25.1 bits (54), Expect = 5.0
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 15/96 (15%)
Query: 49 HSAAEQFMKHYENEQRLRNGCPFNGWYMST----EIGCRDLCDTKRAVKFTSKLFGRALS 104
+ E + + Q +ST +G + + V F S L G A
Sbjct: 160 RALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAF- 218
Query: 105 RRIKATVLYATETGKSELYAKKLGELAVKFTSKLFG 140
T + YAKK G K +L+G
Sbjct: 219 ----------TIRQFATRYAKKFGVDKAKMMDRLWG 244
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 24.3 bits (52), Expect = 8.2
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 49 HSAAEQFMKHYENEQRLRNGCPFNGWYMSTEIGC 82
E+ + + + + C F G E C
Sbjct: 165 DIEEEELGYTFPDIREKSSSCKFRGCLHLKEPKC 198
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.135 0.417
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 647,225
Number of extensions: 27036
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 51
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.5 bits)