Query psy8547
Match_columns 115
No_of_seqs 159 out of 620
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 21:40:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ewk_A Sensor protein; PAS dom 99.7 8E-16 2.7E-20 111.2 12.1 88 5-92 63-227 (227)
2 4hia_A LOV protein; PAS, HTH, 99.1 2.7E-11 9.1E-16 82.5 1.4 56 58-114 86-141 (176)
3 1n9l_A PHOT-LOV1, putative blu 99.0 5.4E-10 1.9E-14 71.6 6.2 39 5-43 70-109 (109)
4 1n9l_A PHOT-LOV1, putative blu 99.0 1.5E-09 5.1E-14 69.5 6.3 39 57-95 71-109 (109)
5 2pr5_A Blue-light photorecepto 98.9 2.1E-09 7.1E-14 70.3 5.1 46 58-105 78-123 (132)
6 3h9w_A Diguanylate cyclase wit 98.9 5.3E-09 1.8E-13 66.5 6.5 45 57-101 70-114 (115)
7 3mr0_A Sensory box histidine k 98.9 3.8E-09 1.3E-13 70.2 5.7 49 57-105 86-134 (142)
8 3ewk_A Sensor protein; PAS dom 98.8 7.7E-09 2.6E-13 74.2 6.2 48 58-105 65-112 (227)
9 2gj3_A Nitrogen fixation regul 98.8 1.4E-08 4.6E-13 65.3 6.1 39 7-45 81-120 (120)
10 2vv6_A FIXL, sensor protein FI 98.8 1.1E-08 3.7E-13 65.5 5.4 47 58-106 73-119 (119)
11 2gj3_A Nitrogen fixation regul 98.8 1.5E-08 5.3E-13 65.0 6.0 40 58-97 81-120 (120)
12 3t50_A Blue-light-activated hi 98.8 1.5E-08 5.3E-13 64.4 5.8 48 58-105 76-123 (128)
13 3h9w_A Diguanylate cyclase wit 98.7 2.4E-08 8.2E-13 63.4 6.4 39 11-49 76-114 (115)
14 4hia_A LOV protein; PAS, HTH, 98.7 9.8E-09 3.4E-13 69.6 4.9 45 6-50 85-130 (176)
15 2pr5_A Blue-light photorecepto 98.7 2E-08 7E-13 65.5 5.5 43 6-50 77-120 (132)
16 3p7n_A Sensor histidine kinase 98.7 7.1E-09 2.4E-13 75.4 3.4 55 59-113 143-197 (258)
17 3t50_A Blue-light-activated hi 98.7 2.7E-08 9.2E-13 63.3 5.8 44 7-50 76-120 (128)
18 3ue6_A Aureochrome1; PAS/LOV d 98.7 2.2E-08 7.5E-13 66.4 4.8 47 59-105 115-161 (166)
19 3ue6_A Aureochrome1; PAS/LOV d 98.6 4.4E-08 1.5E-12 64.9 5.6 44 7-50 114-158 (166)
20 3f1p_A Endothelial PAS domain- 98.6 5.2E-08 1.8E-12 61.8 5.6 44 56-99 73-117 (117)
21 3mr0_A Sensory box histidine k 98.6 1.3E-07 4.4E-12 62.7 6.0 41 11-51 92-132 (142)
22 4eet_B Phototropin-2; LOV, blu 98.5 1.9E-07 6.5E-12 57.4 6.1 39 7-45 76-115 (115)
23 3f1p_B ARYL hydrocarbon recept 98.5 1.1E-07 3.8E-12 60.7 5.1 43 57-99 78-121 (121)
24 3f1p_A Endothelial PAS domain- 98.5 1.5E-07 5.2E-12 59.6 5.6 37 11-47 80-117 (117)
25 3nja_A Probable ggdef family p 98.5 2.8E-07 9.5E-12 57.5 6.3 41 58-98 85-125 (125)
26 4eho_A Bacteriophytochrome, PA 98.5 3E-08 1E-12 83.1 2.1 44 57-100 592-635 (635)
27 3nja_A Probable ggdef family p 98.5 2.9E-07 9.9E-12 57.4 6.2 36 11-46 90-125 (125)
28 3sw1_A Sensory box protein; li 98.5 1.6E-07 5.6E-12 62.0 5.3 48 59-106 105-152 (162)
29 4eet_B Phototropin-2; LOV, blu 98.5 4E-07 1.4E-11 55.9 6.3 40 58-97 76-115 (115)
30 4eho_A Bacteriophytochrome, PA 98.5 2.8E-08 9.4E-13 83.3 1.1 45 4-48 590-635 (635)
31 2z6d_A Phototropin-2; PAS-fold 98.4 5.4E-07 1.8E-11 55.3 6.2 42 8-49 86-128 (130)
32 2z6d_A Phototropin-2; PAS-fold 98.4 5E-07 1.7E-11 55.4 6.0 44 59-102 86-129 (130)
33 2wkq_A NPH1-1, RAS-related C3 98.4 3.3E-07 1.1E-11 68.8 6.0 47 58-104 90-136 (332)
34 3f1p_B ARYL hydrocarbon recept 98.4 3.3E-07 1.1E-11 58.4 5.0 36 11-46 84-120 (121)
35 3k3c_A Protein RV1364C/MT1410; 98.4 2.6E-07 8.9E-12 61.3 4.5 42 64-105 103-144 (158)
36 2vv6_A FIXL, sensor protein FI 98.4 5.9E-07 2E-11 57.2 5.7 42 7-50 73-115 (119)
37 3p7n_A Sensor histidine kinase 98.4 4.3E-07 1.5E-11 65.9 5.5 42 5-46 140-182 (258)
38 3lyx_A Sensory BOX/ggdef domai 98.4 8.9E-07 3.1E-11 54.0 6.2 36 11-46 88-123 (124)
39 2wkq_A NPH1-1, RAS-related C3 98.4 5.6E-07 1.9E-11 67.5 6.1 44 6-49 89-133 (332)
40 3sw1_A Sensory box protein; li 98.4 6.2E-07 2.1E-11 59.2 5.7 45 7-51 104-149 (162)
41 3mqq_A Transcriptional regulat 98.3 2.6E-07 9.1E-12 58.8 3.3 40 7-47 79-119 (120)
42 3mqq_A Transcriptional regulat 98.3 3E-07 1E-11 58.6 3.4 41 58-99 79-119 (120)
43 2v0u_A NPH1-1, LOV2; kinase, t 98.3 3.1E-07 1E-11 57.9 3.3 46 58-103 81-126 (146)
44 3k3c_A Protein RV1364C/MT1410; 98.3 5.9E-07 2E-11 59.5 4.8 40 12-51 103-142 (158)
45 1byw_A Protein (human ERG pota 98.3 1.4E-06 4.8E-11 52.0 5.9 37 8-44 73-110 (110)
46 2v0u_A NPH1-1, LOV2; kinase, t 98.3 1.7E-06 5.7E-11 54.4 6.1 42 8-49 82-124 (146)
47 3lyx_A Sensory BOX/ggdef domai 98.3 2.2E-06 7.4E-11 52.2 6.3 40 59-98 84-123 (124)
48 3kx0_X Uncharacterized protein 98.3 1E-06 3.5E-11 61.0 5.1 39 64-102 123-161 (185)
49 1byw_A Protein (human ERG pota 98.2 2.6E-06 8.8E-11 50.8 5.7 38 59-96 73-110 (110)
50 3kx0_X Uncharacterized protein 98.1 3.5E-06 1.2E-10 58.3 5.2 39 12-50 123-161 (185)
51 1v9y_A Heme PAS sensor protein 98.1 2.6E-06 9E-11 55.8 4.1 48 58-107 120-167 (167)
52 3luq_A Sensor protein; PAS, hi 98.1 9.1E-06 3.1E-10 49.7 6.0 32 11-42 83-114 (114)
53 2l0w_A Potassium voltage-gated 98.1 8.4E-06 2.9E-10 50.7 5.8 37 8-44 101-138 (138)
54 3mxq_A Sensor protein; PSI2, M 98.1 5.6E-06 1.9E-10 57.7 5.3 38 11-48 114-151 (152)
55 3icy_A Sensor protein; sensory 98.0 1.3E-05 4.5E-10 49.5 6.3 38 57-94 81-118 (118)
56 3mjq_A Uncharacterized protein 98.0 9.2E-06 3.2E-10 50.7 5.5 50 59-110 75-124 (126)
57 3mxq_A Sensor protein; PSI2, M 98.0 7E-06 2.4E-10 57.2 5.1 39 62-100 113-151 (152)
58 3icy_A Sensor protein; sensory 98.0 1.6E-05 5.5E-10 49.1 6.2 32 11-42 87-118 (118)
59 3eeh_A Putative light and redo 98.0 2E-05 6.9E-10 48.1 6.1 32 11-42 94-125 (125)
60 2l0w_A Potassium voltage-gated 98.0 1.6E-05 5.4E-10 49.5 5.7 38 59-96 101-138 (138)
61 3luq_A Sensor protein; PAS, hi 98.0 2E-05 6.7E-10 48.1 5.9 37 58-94 78-114 (114)
62 3eeh_A Putative light and redo 97.9 3.1E-05 1E-09 47.3 5.9 37 58-94 89-125 (125)
63 2kdk_A ARYL hydrocarbon recept 97.9 3.4E-05 1.2E-09 48.4 6.0 41 57-97 79-120 (121)
64 3vol_A Aerotaxis transducer AE 97.8 1.9E-05 6.3E-10 57.8 5.0 45 60-106 104-148 (233)
65 3vol_A Aerotaxis transducer AE 97.8 2.3E-05 8E-10 57.2 5.2 38 11-50 107-144 (233)
66 4f3l_A Mclock, circadian locom 97.8 3.4E-05 1.2E-09 60.1 6.1 45 57-101 316-361 (361)
67 3d72_A Vivid PAS protein VVD; 97.8 4.2E-05 1.4E-09 49.7 5.2 34 7-40 115-149 (149)
68 2kdk_A ARYL hydrocarbon recept 97.7 0.0001 3.6E-09 46.1 5.9 35 11-45 85-120 (121)
69 3d72_A Vivid PAS protein VVD; 97.7 8.5E-05 2.9E-09 48.2 5.6 34 59-92 116-149 (149)
70 1d06_A Nitrogen fixation regul 97.7 8.6E-05 2.9E-09 47.7 5.4 35 58-94 96-130 (130)
71 4f3l_B BMAL1B; BHLH, PAS, circ 97.6 6.6E-05 2.3E-09 59.2 5.6 42 57-98 344-386 (387)
72 1d06_A Nitrogen fixation regul 97.6 0.00011 3.9E-09 47.1 5.7 34 7-42 96-130 (130)
73 3mjq_A Uncharacterized protein 97.6 0.00014 4.9E-09 45.0 5.4 38 11-50 79-116 (126)
74 4hi4_A Aerotaxis transducer AE 97.5 0.00014 4.8E-09 46.6 5.3 32 11-44 90-121 (121)
75 4f3l_A Mclock, circadian locom 97.5 0.00018 6.2E-09 55.9 6.1 38 11-48 322-360 (361)
76 1v9y_A Heme PAS sensor protein 97.5 0.00012 4.2E-09 47.5 4.3 38 11-50 125-162 (167)
77 4f3l_B BMAL1B; BHLH, PAS, circ 97.3 0.00033 1.1E-08 55.1 5.7 36 11-46 350-386 (387)
78 2r78_A Sensor protein; sensory 97.3 0.00032 1.1E-08 44.6 4.2 32 58-94 86-117 (117)
79 4hi4_A Aerotaxis transducer AE 97.2 0.00077 2.6E-08 43.1 5.4 35 60-96 87-121 (121)
80 3rty_A Period circadian protei 97.1 0.0041 1.4E-07 48.5 9.9 88 11-98 99-266 (339)
81 2qkp_A Uncharacterized protein 96.9 0.003 1E-07 43.4 6.7 36 14-49 103-138 (151)
82 3cax_A Uncharacterized protein 96.9 0.0014 4.7E-08 51.2 5.4 37 11-49 316-352 (369)
83 3olo_A Two-component sensor hi 96.9 0.0015 5.2E-08 39.9 4.6 30 11-42 89-118 (118)
84 3bwl_A Sensor protein; structu 96.8 0.0016 5.5E-08 40.8 4.4 34 59-94 93-126 (126)
85 3olo_A Two-component sensor hi 96.8 0.0018 6.1E-08 39.5 4.4 34 59-94 85-118 (118)
86 3cax_A Uncharacterized protein 96.7 0.0027 9.2E-08 49.6 5.7 40 61-102 314-353 (369)
87 2qkp_A Uncharacterized protein 96.7 0.0053 1.8E-07 42.1 6.5 82 23-105 33-142 (151)
88 1ll8_A PAS kinase; PAS domain, 96.6 0.0017 6E-08 40.3 3.6 34 59-94 80-113 (114)
89 3bwl_A Sensor protein; structu 96.6 0.0028 9.5E-08 39.6 4.6 30 11-42 97-126 (126)
90 3mfx_A Sensory BOX/ggdef famil 96.5 0.005 1.7E-07 40.8 5.3 33 59-94 91-123 (129)
91 3b33_A Sensor protein; structu 96.5 0.0038 1.3E-07 38.5 4.3 31 10-42 85-115 (115)
92 1ll8_A PAS kinase; PAS domain, 96.4 0.0033 1.1E-07 39.0 3.9 33 8-42 80-113 (114)
93 3fc7_A HTR-like protein, senso 96.2 0.0022 7.5E-08 39.6 2.1 31 11-42 94-125 (125)
94 3mfx_A Sensory BOX/ggdef famil 96.1 0.01 3.5E-07 39.2 5.3 35 6-43 89-124 (129)
95 3b33_A Sensor protein; structu 96.1 0.0091 3.1E-07 36.7 4.5 31 62-94 85-115 (115)
96 3a0r_A Sensor protein; four he 95.9 0.0048 1.6E-07 45.9 3.0 41 65-105 84-125 (349)
97 3a0s_A Sensor protein; PAS-fol 95.7 0.021 7.1E-07 32.4 4.7 30 11-40 66-96 (96)
98 3fc7_A HTR-like protein, senso 95.6 0.0056 1.9E-07 37.7 2.2 34 60-94 91-125 (125)
99 3a0r_A Sensor protein; four he 95.3 0.012 4.2E-07 43.6 3.4 38 12-49 83-121 (349)
100 3a0s_A Sensor protein; PAS-fol 94.5 0.063 2.1E-06 30.3 4.5 32 61-92 64-96 (96)
101 2w0n_A Sensor protein DCUS; si 93.7 0.0094 3.2E-07 36.0 -0.5 29 11-42 90-118 (118)
102 2vlg_A Sporulation kinase A; h 93.6 0.05 1.7E-06 35.0 2.9 25 57-81 71-95 (111)
103 2w0n_A Sensor protein DCUS; si 92.7 0.029 9.9E-07 33.8 0.7 32 60-94 87-118 (118)
104 2ykf_A Pdtas, probable sensor 91.2 0.029 9.8E-07 42.8 0.0 37 68-105 259-295 (305)
105 2ykf_A Pdtas, probable sensor 90.1 0.047 1.6E-06 41.6 0.0 36 15-51 258-293 (305)
106 2vlg_A Sporulation kinase A; h 90.4 0.19 6.5E-06 32.2 2.8 20 11-30 77-96 (111)
107 2jhe_A Transcription regulator 90.4 0.019 6.4E-07 39.0 -2.3 33 11-45 153-189 (190)
108 4dj3_A Period circadian protei 89.2 0.89 3E-05 34.9 6.2 42 57-98 242-284 (317)
109 3rty_A Period circadian protei 89.1 0.82 2.8E-05 35.4 5.9 37 11-47 230-267 (339)
110 4dj2_A Period circadian protei 89.0 0.83 2.8E-05 35.1 5.9 42 57-98 243-285 (320)
111 3gdi_A Period circadian protei 88.1 1 3.6E-05 34.3 5.9 42 57-98 232-274 (309)
112 2jhe_A Transcription regulator 87.4 0.056 1.9E-06 36.6 -1.5 36 61-98 151-190 (190)
113 1p0z_A Sensor kinase CITA; tra 86.5 1.5 5.2E-05 28.6 5.4 33 11-43 95-127 (131)
114 3fg8_A Uncharacterized protein 85.3 0.75 2.6E-05 28.4 3.2 24 67-96 95-118 (118)
115 4dj2_A Period circadian protei 82.1 2.4 8.3E-05 32.4 5.4 37 11-47 249-286 (320)
116 3by8_A Sensor protein DCUS; hi 81.9 2.3 7.9E-05 28.2 4.7 35 11-45 100-134 (142)
117 3gdi_A Period circadian protei 81.1 3.1 0.00011 31.7 5.6 37 11-47 238-275 (309)
118 4dj3_A Period circadian protei 78.1 4.7 0.00016 30.8 5.9 36 11-46 248-284 (317)
119 1p0z_A Sensor kinase CITA; tra 73.6 6.6 0.00023 25.4 5.0 33 63-95 95-127 (131)
120 3lif_A Putative diguanylate cy 70.1 24 0.00083 24.4 8.1 31 15-45 125-155 (254)
121 3by8_A Sensor protein DCUS; hi 63.1 9.6 0.00033 25.0 4.1 34 64-97 101-134 (142)
122 4dah_A Sporulation kinase D; a 60.4 17 0.00058 24.7 5.1 34 11-46 121-154 (217)
123 4dah_A Sporulation kinase D; a 52.7 32 0.0011 23.2 5.5 72 25-98 76-154 (217)
124 3b47_A GSU0582, methyl-accepti 41.0 61 0.0021 21.2 5.2 31 11-43 88-127 (134)
125 1nui_A DNA primase/helicase; z 40.3 21 0.00071 25.8 3.0 23 11-37 102-124 (255)
126 3c8c_A Methyl-accepting chemot 38.2 61 0.0021 21.5 5.0 29 16-44 118-147 (240)
127 4edg_A DNA primase; catalytic 37.2 25 0.00084 27.1 3.1 21 19-39 97-117 (329)
128 3bid_A UPF0339 protein NMB1088 36.2 29 0.001 20.5 2.7 43 60-108 7-49 (64)
129 2ggv_B NS3, non-structural pro 31.9 33 0.0011 24.6 2.8 19 20-38 134-152 (185)
130 2xzh_A Clathrin heavy chain 1; 31.0 1.8E+02 0.006 22.9 7.1 72 5-81 153-226 (365)
131 3lfr_A Putative metal ION tran 30.8 28 0.00097 21.9 2.2 18 19-36 100-117 (136)
132 1kxf_A Sindbis virus capsid pr 30.5 36 0.0012 25.5 2.9 21 20-40 114-134 (264)
133 4esy_A CBS domain containing m 30.4 28 0.00097 22.8 2.2 22 20-42 50-71 (170)
134 3nqr_A Magnesium and cobalt ef 30.1 30 0.001 21.4 2.2 18 19-36 99-116 (127)
135 2fp7_B Serine protease NS3; fl 30.0 27 0.00092 24.8 2.0 18 20-37 120-137 (172)
136 3lic_A Sensor protein; PDC fol 29.4 61 0.0021 22.4 3.9 30 15-45 144-173 (274)
137 2yjl_A EXSB, exoenzyme S synth 27.9 29 0.00098 23.2 1.8 32 2-33 42-74 (125)
138 2fom_B Polyprotein; flavivirus 27.9 31 0.001 24.8 2.0 17 20-36 135-151 (185)
139 3c38_A Autoinducer 2 sensor ki 27.6 74 0.0025 24.1 4.2 53 60-112 127-180 (270)
140 2hje_A Autoinducer 2 sensor ki 26.9 1E+02 0.0034 22.7 4.7 53 60-112 108-161 (221)
141 1dd9_A DNA primase, DNAG; topr 26.7 47 0.0016 25.5 3.1 22 18-39 107-128 (338)
142 3jtf_A Magnesium and cobalt ef 26.5 51 0.0017 20.4 2.8 18 19-36 99-116 (129)
143 3by9_A Sensor protein; histidi 26.4 72 0.0025 21.7 3.8 27 16-43 128-154 (260)
144 3i8n_A Uncharacterized protein 26.3 53 0.0018 20.3 2.9 18 19-36 102-119 (130)
145 3gby_A Uncharacterized protein 26.1 53 0.0018 20.1 2.8 16 21-36 101-116 (128)
146 3hf7_A Uncharacterized CBS-dom 26.1 53 0.0018 20.4 2.9 18 19-36 100-117 (130)
147 3kpb_A Uncharacterized protein 25.9 61 0.0021 19.4 3.1 17 20-36 94-110 (122)
148 3hcy_A Putative two-component 25.6 1.1E+02 0.0036 18.8 4.3 22 18-40 92-113 (151)
149 3e0y_A Conserved domain protei 25.2 1.3E+02 0.0044 18.7 4.8 23 17-40 118-140 (181)
150 1ykd_A Adenylate cyclase; GAF 24.7 83 0.0028 23.2 4.1 24 17-40 120-143 (398)
151 3oi8_A Uncharacterized protein 24.4 59 0.002 20.9 2.9 18 19-36 133-150 (156)
152 3k6e_A CBS domain protein; str 24.1 47 0.0016 21.7 2.4 21 20-41 49-69 (156)
153 2o99_A Acetate operon represso 24.0 70 0.0024 21.4 3.3 22 18-39 127-148 (182)
154 3lv9_A Putative transporter; C 23.9 62 0.0021 20.4 2.9 17 20-36 119-135 (148)
155 1ysp_A Transcriptional regulat 23.7 65 0.0022 21.5 3.1 22 18-39 123-144 (181)
156 1bpo_A Protein (clathrin); cla 23.7 3E+02 0.01 22.5 8.4 74 4-82 151-226 (494)
157 3lif_A Putative diguanylate cy 23.6 1.2E+02 0.0042 20.7 4.6 30 68-97 126-155 (254)
158 3e90_B NS3 protease; trypsin-l 23.6 42 0.0014 24.3 2.1 18 20-37 139-156 (198)
159 2ef7_A Hypothetical protein ST 23.3 73 0.0025 19.4 3.1 17 20-36 99-115 (133)
160 3u1j_B Serine protease NS3; se 23.3 42 0.0014 24.2 2.0 18 20-37 144-161 (191)
161 4gqw_A CBS domain-containing p 23.3 53 0.0018 20.4 2.4 17 20-36 117-133 (152)
162 3lqn_A CBS domain protein; csg 23.2 63 0.0022 20.3 2.8 22 20-42 49-70 (150)
163 4agk_A Capsid protein, coat pr 22.4 69 0.0024 22.0 2.9 21 20-40 8-28 (158)
164 1f5m_A GAF; CGMP binding, sign 22.2 1.3E+02 0.0046 20.2 4.5 24 17-40 130-153 (180)
165 2au3_A DNA primase; zinc ribbo 22.1 64 0.0022 25.1 3.1 19 19-37 188-206 (407)
166 3tlq_A Regulatory protein YDIV 22.1 1.7E+02 0.0057 20.5 5.2 26 14-39 13-38 (242)
167 1svp_A Sindbis virus capsid pr 21.9 78 0.0027 21.8 3.1 20 21-40 10-29 (161)
168 3oco_A Hemolysin-like protein 21.2 66 0.0023 20.5 2.6 16 20-35 117-132 (153)
169 2p9m_A Hypothetical protein MJ 21.0 72 0.0025 19.5 2.7 21 20-41 40-60 (138)
170 2yzi_A Hypothetical protein PH 20.7 88 0.003 19.2 3.1 21 20-41 39-59 (138)
171 3sl7_A CBS domain-containing p 20.7 75 0.0026 20.4 2.8 25 20-45 130-154 (180)
172 3obf_A Putative transcriptiona 20.6 1.5E+02 0.0053 19.5 4.5 22 18-39 122-143 (176)
173 2uv4_A 5'-AMP-activated protei 20.5 84 0.0029 19.9 3.0 17 20-36 53-69 (152)
174 3lkw_A Fusion protein of nonst 20.4 51 0.0017 24.5 2.0 18 20-37 185-202 (236)
175 3e4o_A C4-dicarboxylate transp 20.4 1.1E+02 0.0038 22.6 4.0 30 16-46 169-198 (305)
176 2nyc_A Nuclear protein SNF4; b 20.2 90 0.0031 19.1 3.1 22 20-42 43-64 (144)
No 1
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.67 E-value=8e-16 Score=111.17 Aligned_cols=88 Identities=25% Similarity=0.464 Sum_probs=74.3
Q ss_pred ceeecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhhc--------------------------C-----
Q psy8547 5 PDTNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMAD--------------------------N----- 52 (115)
Q Consensus 5 ~~~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~~--------------------------~----- 52 (115)
+..+.+ ||+.+|+.++++|++|++|++.+++++.+|||++|++++.+ |
T Consensus 63 e~~~~~~dG~~~~~~~~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~ 142 (227)
T 3ewk_A 63 EFCNRRKDGTRYWVDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLARLKQAMDANSEMILLTDRAGRIIYANPALCR 142 (227)
T ss_dssp EEEEECSSSCEEEEEEEEEEEECSSSCEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCSEEEEECTTSCEEEECHHHHH
T ss_pred EEEEEcCCCCEEeeeeEEEEEEcCCCCEEEEEEEEEehhhHHHHHHHHHHHHHHHhcCcCeEEEEcCCCcEEEEchHHHH
Confidence 344556 99999999999999999999999999999999999988732 0
Q ss_pred ----------C--------C---------------------CceeceecCCc------eeEEEEEeEEeeCCCCCEEEEE
Q psy8547 53 ----------G--------E---------------------GDYEDMQELGT------PFWCLLDIVPIKNEKREVVLYL 87 (115)
Q Consensus 53 ----------~--------~---------------------e~~~~yrKdGs------~f~~~~~i~pirde~G~v~~~i 87 (115)
| . .....++|||+ .||++++++|++|++|.+++|+
T Consensus 143 ~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~g~~~~~v 222 (227)
T 3ewk_A 143 FSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYV 222 (227)
T ss_dssp HHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSSCEEEEE
T ss_pred HhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCCCCEEEEE
Confidence 0 0 01234788887 8999999999999999999999
Q ss_pred EEeee
Q psy8547 88 ASHKD 92 (115)
Q Consensus 88 ~~~~D 92 (115)
+++.|
T Consensus 223 ~i~~D 227 (227)
T 3ewk_A 223 QIQHD 227 (227)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99987
No 2
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.07 E-value=2.7e-11 Score=82.51 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=51.9
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhccCCCcccccc
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNGEGDYEDMQE 114 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~~~~~~~~~~~ 114 (115)
..++|||+.+|+.++++|+++++|.+.++++++.|||++|++|++ .++|.+|.|..
T Consensus 86 ~~~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~-~~~a~~d~Ltg 141 (176)
T 4hia_A 86 RNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEA-AAAGHAGALTG 141 (176)
T ss_dssp EEECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHH-HHHHHHHHHHH
T ss_pred EEEcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHH-HHHhhhhHHhh
Confidence 347899999999999999999999999999999999999999999 88999998753
No 3
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.02 E-value=5.4e-10 Score=71.64 Aligned_cols=39 Identities=41% Similarity=0.710 Sum_probs=36.5
Q ss_pred ceeecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccc
Q psy8547 5 PDTNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTN 43 (115)
Q Consensus 5 ~~~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~ 43 (115)
+..+|| ||+.||++++++|++|++|++.+|+++++|||+
T Consensus 70 e~~~~~kdG~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 70 RLLNYRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 456888 999999999999999999999999999999995
No 4
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=98.95 E-value=1.5e-09 Score=69.53 Aligned_cols=39 Identities=36% Similarity=0.663 Sum_probs=36.6
Q ss_pred eeceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeeccc
Q psy8547 57 YEDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTN 95 (115)
Q Consensus 57 ~~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~ 95 (115)
...++|||+.||++++++|++|++|++.+|++++.|||+
T Consensus 71 ~~~~~kdG~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 71 LLNYRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 346899999999999999999999999999999999995
No 5
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=98.88 E-value=2.1e-09 Score=70.28 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=41.8
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhcc
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNG 105 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~~ 105 (115)
..++|||+.||+.++++|++++. +.++++++.|||++|++|++|++
T Consensus 78 ~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~ 123 (132)
T 2pr5_A 78 QNYKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLED 123 (132)
T ss_dssp EEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHH
T ss_pred EEEecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHH
Confidence 34789999999999999999876 88999999999999999998865
No 6
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=98.87 E-value=5.3e-09 Score=66.45 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=39.9
Q ss_pred eeceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhch
Q psy8547 57 YEDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQM 101 (115)
Q Consensus 57 ~~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~ 101 (115)
++..+|||+.+|+.....|++|++|+++.++++..|||++|.+|+
T Consensus 70 ~r~~~~dG~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 70 YRALHRDGHYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred EEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 456789999999999999999999999999999999999999986
No 7
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=98.85 E-value=3.8e-09 Score=70.25 Aligned_cols=49 Identities=20% Similarity=0.060 Sum_probs=45.7
Q ss_pred eeceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhcc
Q psy8547 57 YEDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNG 105 (115)
Q Consensus 57 ~~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~~ 105 (115)
++..++||+..|+.....|++|++|.+..++++..|||++|++|++|+.
T Consensus 86 ~r~~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~ 134 (142)
T 3mr0_A 86 YRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRV 134 (142)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHH
T ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999998874
No 8
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=98.80 E-value=7.7e-09 Score=74.20 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=45.0
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhcc
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNG 105 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~~ 105 (115)
..++|||+.+|+.++++|++|++|++.+++++..|||++|++|++++.
T Consensus 65 ~~~~~dG~~~~~~~~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l~~ 112 (227)
T 3ewk_A 65 CNRRKDGTRYWVDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLAR 112 (227)
T ss_dssp EEECSSSCEEEEEEEEEEEECSSSCEEEEEEEEEECTTTTHHHHHHHH
T ss_pred EEEcCCCCEEeeeeEEEEEEcCCCCEEEEEEEEEehhhHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999998765
No 9
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=98.77 E-value=1.4e-08 Score=65.30 Aligned_cols=39 Identities=31% Similarity=0.574 Sum_probs=36.0
Q ss_pred eecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchh
Q psy8547 7 TNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTK 45 (115)
Q Consensus 7 ~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k 45 (115)
.+.+ ||+.+|+.++++|++|++|.+.+++++++|||++|
T Consensus 81 ~~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 81 VNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred EEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 3455 99999999999999999999999999999999976
No 10
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=98.77 E-value=1.1e-08 Score=65.54 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=30.1
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhccC
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNGE 106 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~~~ 106 (115)
..++|||+.||+.++++|+.+.. ...++++++|||++|++|++|+++
T Consensus 73 ~~~~~dG~~~~~~~~~~~~~~~~--~~~~~~~~~DITerk~~e~~l~~l 119 (119)
T 2vv6_A 73 TGKRRDGTTFPMHLSIGEMQSGG--EPYFTGFVRDLTEHQQTQARLQEL 119 (119)
T ss_dssp EEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC------------
T ss_pred EEEeCCCCEEEEEEEEEEEEECC--eEEEEEEEEEcHHHHHHHHHHHhC
Confidence 34789999999999999998743 356899999999999999998763
No 11
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=98.76 E-value=1.5e-08 Score=65.03 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=37.5
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccch
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTK 97 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k 97 (115)
..++|||+.+|+.++++|++|++|++.++++++.|||++|
T Consensus 81 ~~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 81 VNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred EEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 3478999999999999999999999999999999999986
No 12
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=98.75 E-value=1.5e-08 Score=64.44 Aligned_cols=48 Identities=23% Similarity=0.392 Sum_probs=38.9
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhcc
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNG 105 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~~ 105 (115)
...+++|..+|+.++++|++++.|.+.++++++.|||++|++|++.+.
T Consensus 76 ~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~~~ 123 (128)
T 3t50_A 76 INYKKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSLEH 123 (128)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-------
T ss_pred EEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhhhh
Confidence 346899999999999999999999999999999999999999997664
No 13
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=98.74 E-value=2.4e-08 Score=63.36 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=35.7
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhh
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQM 49 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~ 49 (115)
||+..|+.....|++|++|++++++++..|||++|.+|+
T Consensus 76 dG~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 76 DGHYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp TSCEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 999999999999999999999999999999999999874
No 14
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=98.74 E-value=9.8e-09 Score=69.60 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=41.1
Q ss_pred eeecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhh
Q psy8547 6 DTNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMA 50 (115)
Q Consensus 6 ~~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~ 50 (115)
...++ ||+.+|+.++++|+++++|.+.+++++.+|||++|++|+.
T Consensus 85 ~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~ 130 (176)
T 4hia_A 85 LRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEA 130 (176)
T ss_dssp EEEECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHH
T ss_pred EEEEcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHH
Confidence 44556 9999999999999999999999999999999999998874
No 15
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=98.71 E-value=2e-08 Score=65.46 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=38.2
Q ss_pred eeecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhh
Q psy8547 6 DTNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMA 50 (115)
Q Consensus 6 ~~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~ 50 (115)
..+++ ||+.||+.++++|+++++ +.+++++++|||++|++|+.
T Consensus 77 ~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~ 120 (132)
T 2pr5_A 77 IQNYKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKL 120 (132)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHH
T ss_pred EEEEecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHH
Confidence 34566 999999999999999976 88999999999999998874
No 16
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=98.70 E-value=7.1e-09 Score=75.44 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=38.9
Q ss_pred ceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhccCCCccccc
Q psy8547 59 DMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNGEGDYEDMQ 113 (115)
Q Consensus 59 ~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~~~~~~~~~~ 113 (115)
.++|||+.+|+.++++|++|++|.+.++++++.|||++|+.+......+..+.|.
T Consensus 143 ~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITerk~~~~e~~~~~~~~~l~ 197 (258)
T 3p7n_A 143 NYKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQPNMGMARRERAAEMLK 197 (258)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC-------CHHHHHHHHHHHT
T ss_pred EEcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchhhhhhhHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999955554443333344433
No 17
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=98.70 E-value=2.7e-08 Score=63.30 Aligned_cols=44 Identities=27% Similarity=0.509 Sum_probs=37.5
Q ss_pred eecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhh
Q psy8547 7 TNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMA 50 (115)
Q Consensus 7 ~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~ 50 (115)
...+ +|..+|+.++++|+++++|.+.+++++++|||++|.+++.
T Consensus 76 ~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~ 120 (128)
T 3t50_A 76 INYKKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGS 120 (128)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC----
T ss_pred EEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhh
Confidence 3445 9999999999999999999999999999999999998875
No 18
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=98.67 E-value=2.2e-08 Score=66.43 Aligned_cols=47 Identities=19% Similarity=0.457 Sum_probs=42.9
Q ss_pred ceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhcc
Q psy8547 59 DMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNG 105 (115)
Q Consensus 59 ~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~~ 105 (115)
.++++|+.+|+.++++|+++++|.+.++++++.|||++|+++.....
T Consensus 115 ~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~~e~ 161 (166)
T 3ue6_A 115 NYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLVNEQ 161 (166)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHHHHH
T ss_pred EEcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHHHhh
Confidence 46899999999999999999999999999999999999999876443
No 19
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=98.64 E-value=4.4e-08 Score=64.91 Aligned_cols=44 Identities=25% Similarity=0.526 Sum_probs=40.2
Q ss_pred eecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhh
Q psy8547 7 TNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMA 50 (115)
Q Consensus 7 ~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~ 50 (115)
..++ ||+.+|+.++++|+++++|.+.+++++++|||++|+++.+
T Consensus 114 ~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~ 158 (166)
T 3ue6_A 114 LNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLV 158 (166)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHH
T ss_pred EEEcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHH
Confidence 3455 9999999999999999999999999999999999998764
No 20
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=98.64 E-value=5.2e-08 Score=61.81 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=39.3
Q ss_pred ceeceecCCceeEEEEEeEEeeCC-CCCEEEEEEEeeecccchhh
Q psy8547 56 DYEDMQELGTPFWCLLDIVPIKNE-KREVVLYLASHKDVTNTKMA 99 (115)
Q Consensus 56 ~~~~yrKdGs~f~~~~~i~pirde-~G~v~~~i~~~~DIT~~k~~ 99 (115)
.++.++|||+.+|+.++.+|++|+ .|++..++++..|||++|++
T Consensus 73 e~r~~~~dG~~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~~ 117 (117)
T 3f1p_A 73 QYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKN 117 (117)
T ss_dssp CEEEECTTSSEEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC-
T ss_pred EEEEEecCCCEEEEEEeeEEEECCCCCCceEEEEEeeeccccccC
Confidence 345678999999999999999998 89999999999999999874
No 21
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=98.55 E-value=1.3e-07 Score=62.70 Aligned_cols=41 Identities=20% Similarity=0.020 Sum_probs=39.4
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhhc
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMAD 51 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~~ 51 (115)
||+..|+.....|++|++|.++.++++..|||++|++|+++
T Consensus 92 ~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L 132 (142)
T 3mr0_A 92 SGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDAL 132 (142)
T ss_dssp TSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHH
T ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHH
Confidence 99999999999999999999999999999999999998864
No 22
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=98.54 E-value=1.9e-07 Score=57.40 Aligned_cols=39 Identities=26% Similarity=0.612 Sum_probs=35.6
Q ss_pred eecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchh
Q psy8547 7 TNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTK 45 (115)
Q Consensus 7 ~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k 45 (115)
...+ ||+.+|+.++++|+++++|.+.+++++.+|||+++
T Consensus 76 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 76 INYTKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred EEecCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence 3445 99999999999999999999999999999999874
No 23
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=98.54 E-value=1.1e-07 Score=60.73 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=37.0
Q ss_pred eeceecCCceeEEEEEeEEeeCC-CCCEEEEEEEeeecccchhh
Q psy8547 57 YEDMQELGTPFWCLLDIVPIKNE-KREVVLYLASHKDVTNTKMA 99 (115)
Q Consensus 57 ~~~yrKdGs~f~~~~~i~pirde-~G~v~~~i~~~~DIT~~k~~ 99 (115)
++.++|||+.+|+..+.+|++|+ .|++..++++..|||++|+.
T Consensus 78 ~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kqe 121 (121)
T 3f1p_B 78 FRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQE 121 (121)
T ss_dssp EEEECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC---
T ss_pred EEEEecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccCC
Confidence 45578999999999999999998 88999999999999999873
No 24
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=98.53 E-value=1.5e-07 Score=59.57 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=34.6
Q ss_pred CCCceeEEEEEEEeeCC-CCCEEEEEEEEEeccchhhh
Q psy8547 11 QRTPFWCLLDIVPIKNE-KREVVLYLASHKDVTNTKMA 47 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de-~G~~~~fi~~~~DIT~~k~~ 47 (115)
||+.+|++++.+|++|+ +|.+.+++++.+|||++|++
T Consensus 80 dG~~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~~ 117 (117)
T 3f1p_A 80 HGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKN 117 (117)
T ss_dssp TSSEEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC-
T ss_pred CCCEEEEEEeeEEEECCCCCCceEEEEEeeeccccccC
Confidence 99999999999999998 89999999999999999863
No 25
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=98.51 E-value=2.8e-07 Score=57.45 Aligned_cols=41 Identities=15% Similarity=-0.044 Sum_probs=35.8
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchh
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKM 98 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~ 98 (115)
+..+++|+.+|+.++..|+++++|.+..++++..|||++|+
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 85 RIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred EEECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 44679999999999999999999999999999999999985
No 26
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.50 E-value=3e-08 Score=83.09 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=41.6
Q ss_pred eeceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhc
Q psy8547 57 YEDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQ 100 (115)
Q Consensus 57 ~~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E 100 (115)
++.++|||++||+.++++|++|+.|+++++++++.|||++|++|
T Consensus 592 ~~~~~~dG~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 592 VLLRGAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp CEECCSSSSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred EEEEccCCcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 45589999999999999999999999999999999999999987
No 27
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=98.50 E-value=2.9e-07 Score=57.36 Aligned_cols=36 Identities=14% Similarity=-0.068 Sum_probs=32.6
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhh
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKM 46 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~ 46 (115)
||+..|+.+...|+++++|.+.+++++..|||++|+
T Consensus 90 ~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 90 DGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp TSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred CCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 999999999999999999999999999999999984
No 28
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=98.50 E-value=1.6e-07 Score=62.02 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=44.6
Q ss_pred ceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhccC
Q psy8547 59 DMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNGE 106 (115)
Q Consensus 59 ~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~~~ 106 (115)
.++++|..+|+.+++.|+.+++|.+.++++++.|||++|++|+++++.
T Consensus 105 ~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~ 152 (162)
T 3sw1_A 105 NYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAEL 152 (162)
T ss_dssp EECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHH
T ss_pred EECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999988754
No 29
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=98.47 E-value=4e-07 Score=55.92 Aligned_cols=40 Identities=23% Similarity=0.556 Sum_probs=37.1
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccch
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTK 97 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k 97 (115)
...+++|+.+|+.++++|+++++|.+.++++++.|||+++
T Consensus 76 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 76 INYTKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred EEecCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence 3468999999999999999999999999999999999874
No 30
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.47 E-value=2.8e-08 Score=83.27 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=41.2
Q ss_pred cceeecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhh
Q psy8547 4 HPDTNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQ 48 (115)
Q Consensus 4 ~~~~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e 48 (115)
.+..+++ ||+.+|+.++++|++|++|++++|+++++|||++|++|
T Consensus 590 ~E~~~~~~dG~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 590 GEVLLRGAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp CCCEECCSSSSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred EEEEEEccCCcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 3456667 99999999999999999999999999999999999875
No 31
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=98.43 E-value=5.4e-07 Score=55.30 Aligned_cols=42 Identities=29% Similarity=0.673 Sum_probs=35.8
Q ss_pred ecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhh
Q psy8547 8 NYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQM 49 (115)
Q Consensus 8 ~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~ 49 (115)
..+ +|+.+|+.+.+.|+++++|.+.+++++.+|||+++++++
T Consensus 86 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~ 128 (130)
T 2z6d_A 86 NYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVN 128 (130)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC----
T ss_pred EEcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhc
Confidence 345 999999999999999999999999999999999998774
No 32
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=98.43 E-value=5e-07 Score=55.43 Aligned_cols=44 Identities=25% Similarity=0.588 Sum_probs=37.1
Q ss_pred ceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchh
Q psy8547 59 DMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMA 102 (115)
Q Consensus 59 ~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~ 102 (115)
..+++|+.+|+.+++.|+.++.|.+..+++++.|||++|++|+.
T Consensus 86 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 86 NYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC-----
T ss_pred EEcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhcc
Confidence 46789999999999999999999999999999999999998863
No 33
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.43 E-value=3.3e-07 Score=68.79 Aligned_cols=47 Identities=19% Similarity=0.442 Sum_probs=43.3
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhc
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADN 104 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~ 104 (115)
+.++|||+.+|+.++++|++|+.|++.++++++.|||++|+.|++.+
T Consensus 90 ~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~~ 136 (332)
T 2wkq_A 90 INYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAERE 136 (332)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHHH
T ss_pred EEEcCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhcc
Confidence 45789999999999999999999999999999999999999887653
No 34
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=98.41 E-value=3.3e-07 Score=58.44 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=33.0
Q ss_pred CCCceeEEEEEEEeeCC-CCCEEEEEEEEEeccchhh
Q psy8547 11 QRTPFWCLLDIVPIKNE-KREVVLYLASHKDVTNTKM 46 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de-~G~~~~fi~~~~DIT~~k~ 46 (115)
||+.+|++++.+|++|+ +|.+.+++++.+|||++|+
T Consensus 84 dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 84 NQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp TSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred CCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 99999999999999998 8999999999999999986
No 35
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=98.41 E-value=2.6e-07 Score=61.25 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=39.8
Q ss_pred CceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhcc
Q psy8547 64 GTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNG 105 (115)
Q Consensus 64 Gs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~~ 105 (115)
|..+|+.++++|+++++|.+.++++++.|||++|++|++++.
T Consensus 103 g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~ 144 (158)
T 3k3c_A 103 VEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEA 144 (158)
T ss_dssp EEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHH
T ss_pred cceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHH
Confidence 788999999999999999999999999999999999998864
No 36
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=98.39 E-value=5.9e-07 Score=57.23 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=28.7
Q ss_pred eecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhh
Q psy8547 7 TNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMA 50 (115)
Q Consensus 7 ~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~ 50 (115)
...+ ||+.||+.++++|+.+..+ .+|+++++|||++|++|+.
T Consensus 73 ~~~~~dG~~~~~~~~~~~~~~~~~--~~~~~~~~DITerk~~e~~ 115 (119)
T 2vv6_A 73 TGKRRDGTTFPMHLSIGEMQSGGE--PYFTGFVRDLTEHQQTQAR 115 (119)
T ss_dssp EEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEECC--------
T ss_pred EEEeCCCCEEEEEEEEEEEEECCe--EEEEEEEEEcHHHHHHHHH
Confidence 3446 9999999999999997433 5689999999999998864
No 37
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=98.38 E-value=4.3e-07 Score=65.90 Aligned_cols=42 Identities=26% Similarity=0.498 Sum_probs=33.8
Q ss_pred ceeecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhh
Q psy8547 5 PDTNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKM 46 (115)
Q Consensus 5 ~~~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~ 46 (115)
....++ ||+.+|+.++++|++|++|.+.+++++++|||++|.
T Consensus 140 e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITerk~ 182 (258)
T 3p7n_A 140 EILNYKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQP 182 (258)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC-----
T ss_pred EEEEEcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchhhh
Confidence 344556 999999999999999999999999999999999943
No 38
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=98.38 E-value=8.9e-07 Score=54.01 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=33.5
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhh
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKM 46 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~ 46 (115)
+|..+|+.+++.|+++++|.+.+++++.+|||++|+
T Consensus 88 ~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 88 DGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp TSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 999999999999999999999999999999999875
No 39
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.37 E-value=5.6e-07 Score=67.53 Aligned_cols=44 Identities=23% Similarity=0.474 Sum_probs=40.2
Q ss_pred eeecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhh
Q psy8547 6 DTNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQM 49 (115)
Q Consensus 6 ~~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~ 49 (115)
...++ ||+.+|+.++++|++|++|.+.+++++.+|||++++.++
T Consensus 89 ~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~ 133 (332)
T 2wkq_A 89 LINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAA 133 (332)
T ss_dssp EEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHH
T ss_pred EEEEcCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhh
Confidence 34556 999999999999999999999999999999999988776
No 40
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=98.37 E-value=6.2e-07 Score=59.17 Aligned_cols=45 Identities=27% Similarity=0.508 Sum_probs=40.8
Q ss_pred eecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhhc
Q psy8547 7 TNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMAD 51 (115)
Q Consensus 7 ~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~~ 51 (115)
..++ +|+.+|+.+.+.|+.+++|.+.+++++.+|||+++++++.+
T Consensus 104 ~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l 149 (162)
T 3sw1_A 104 RNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELEREL 149 (162)
T ss_dssp EEECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHH
T ss_pred EEECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHH
Confidence 3445 99999999999999999999999999999999999988753
No 41
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=98.35 E-value=2.6e-07 Score=58.82 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=31.3
Q ss_pred eecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhh
Q psy8547 7 TNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMA 47 (115)
Q Consensus 7 ~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~ 47 (115)
...+ ||+.+|+.++..|+ +.+|...+++++++|||++|+.
T Consensus 79 ~~~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 79 IMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp EEECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred EEEeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 3445 99999999999999 6677777899999999999975
No 42
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=98.34 E-value=3e-07 Score=58.58 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=32.6
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhh
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMA 99 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~ 99 (115)
..++|||+.+|+.++..|+ +..|.+..+++++.|||++|+.
T Consensus 79 ~~~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 79 IMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp EEECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred EEEeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 4578999999999999999 5666677899999999999975
No 43
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=98.33 E-value=3.1e-07 Score=57.89 Aligned_cols=46 Identities=20% Similarity=0.445 Sum_probs=40.7
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhh
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMAD 103 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~ 103 (115)
...+++|..+|+.++..|++++.|.+.++++++.|||++|+.++..
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~~~~~ 126 (146)
T 2v0u_A 81 INYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAER 126 (146)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHH
T ss_pred EEEecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHHHHHHH
Confidence 3468999999999999999999999999999999999999855433
No 44
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=98.33 E-value=5.9e-07 Score=59.49 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=37.5
Q ss_pred CCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhhc
Q psy8547 12 RTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMAD 51 (115)
Q Consensus 12 G~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~~ 51 (115)
|...|+.++++|+++++|.+.+++++.+|||++|++++.+
T Consensus 103 g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l 142 (158)
T 3k3c_A 103 VEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAA 142 (158)
T ss_dssp EEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHH
T ss_pred cceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHH
Confidence 7789999999999999999999999999999999998753
No 45
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.32 E-value=1.4e-06 Score=52.00 Aligned_cols=37 Identities=35% Similarity=0.740 Sum_probs=34.2
Q ss_pred ecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccch
Q psy8547 8 NYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNT 44 (115)
Q Consensus 8 ~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~ 44 (115)
.++ +|+.+|+.+++.|+++++|.+.+++++.+|||++
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 73 FYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EECTTSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred EEcCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 345 9999999999999999999999999999999975
No 46
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=98.29 E-value=1.7e-06 Score=54.40 Aligned_cols=42 Identities=24% Similarity=0.533 Sum_probs=37.9
Q ss_pred ecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhh
Q psy8547 8 NYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQM 49 (115)
Q Consensus 8 ~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~ 49 (115)
..+ +|..+|+.+...|+++++|.+.+++++.+|||+++..+.
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~~~ 124 (146)
T 2v0u_A 82 NYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAA 124 (146)
T ss_dssp EECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHH
T ss_pred EEecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHHHHH
Confidence 345 999999999999999999999999999999999998443
No 47
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=98.28 E-value=2.2e-06 Score=52.25 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=36.1
Q ss_pred ceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchh
Q psy8547 59 DMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKM 98 (115)
Q Consensus 59 ~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~ 98 (115)
..+++|..+|+.+++.|+.++.|.+.++++++.|||++|+
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 84 MLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp EECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred EEccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 4679999999999999999999999999999999999875
No 48
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=98.27 E-value=1e-06 Score=60.97 Aligned_cols=39 Identities=15% Similarity=0.046 Sum_probs=36.2
Q ss_pred CceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchh
Q psy8547 64 GTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMA 102 (115)
Q Consensus 64 Gs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~ 102 (115)
|..+|+.++++|+++++|.+..+++++.|||++|++|++
T Consensus 123 g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 123 VEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp -CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC-
T ss_pred CccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHH
Confidence 888999999999999999999999999999999999998
No 49
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.23 E-value=2.6e-06 Score=50.82 Aligned_cols=38 Identities=32% Similarity=0.645 Sum_probs=35.6
Q ss_pred ceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccc
Q psy8547 59 DMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNT 96 (115)
Q Consensus 59 ~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~ 96 (115)
.++++|+.+|+.++++|++++.|.+..+++++.|||++
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 73 FYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EECTTSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred EEcCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 46899999999999999999999999999999999975
No 50
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=98.12 E-value=3.5e-06 Score=58.26 Aligned_cols=39 Identities=15% Similarity=0.057 Sum_probs=35.9
Q ss_pred CCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhh
Q psy8547 12 RTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMA 50 (115)
Q Consensus 12 G~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~ 50 (115)
|...|+.++++|++|++|.+.+++++.+|||++|+++++
T Consensus 123 g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 123 VEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp -CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC-
T ss_pred CccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHH
Confidence 888999999999999999999999999999999999876
No 51
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=98.10 E-value=2.6e-06 Score=55.75 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=28.2
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhccCC
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNGEG 107 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~~~~ 107 (115)
...+++|..+|+.+++.|+ +..|.+. +++++.|||+++++|++++++|
T Consensus 120 ~~~~~~g~~~~~~~~~~~~-~~~g~~~-~~~~~~DiT~~~~~e~~l~~la 167 (167)
T 1v9y_A 120 QLEKKDGSKIWTRFALSKV-SAEGKVY-YLALVRDASVEMAQKEQTRQLI 167 (167)
T ss_dssp EEECTTSCEEEEEEEEEEE-EETTEEE-EEEEEEC---------------
T ss_pred EEEcCCCcEEEEEEEEEEE-ecCCCEE-EEEEEecCcHHHHHHHHHHhhC
Confidence 3467899999999999999 5677775 9999999999999999998764
No 52
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=98.08 E-value=9.1e-06 Score=49.68 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=30.5
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEecc
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVT 42 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT 42 (115)
+|+.+|+.++++|+++++|.+.+++++.+|||
T Consensus 83 ~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 83 DGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp -CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 99999999999999999999999999999998
No 53
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=98.07 E-value=8.4e-06 Score=50.75 Aligned_cols=37 Identities=35% Similarity=0.740 Sum_probs=34.1
Q ss_pred ecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccch
Q psy8547 8 NYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNT 44 (115)
Q Consensus 8 ~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~ 44 (115)
.++ +|+.+|+.+++.|+++++|.+.+++++++|||++
T Consensus 101 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 101 FYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred EECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 345 9999999999999999999999999999999974
No 54
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=98.06 E-value=5.6e-06 Score=57.67 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=31.0
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhh
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQ 48 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e 48 (115)
+|..+|..++++|++|++|++.+++.+.+|||+++.+.
T Consensus 114 ~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a~ 151 (152)
T 3mxq_A 114 EEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
T ss_dssp --CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC----
T ss_pred CCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhcc
Confidence 56788999999999999999999999999999998764
No 55
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=98.04 E-value=1.3e-05 Score=49.51 Aligned_cols=38 Identities=13% Similarity=0.024 Sum_probs=35.3
Q ss_pred eeceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecc
Q psy8547 57 YEDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVT 94 (115)
Q Consensus 57 ~~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT 94 (115)
++..+++|+..|+.....|+++++|.+..++++..|||
T Consensus 81 ~r~~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 81 YRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 34568999999999999999999999999999999998
No 56
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=98.03 E-value=9.2e-06 Score=50.66 Aligned_cols=50 Identities=18% Similarity=-0.033 Sum_probs=28.8
Q ss_pred ceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhccCCCcc
Q psy8547 59 DMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNGEGDYE 110 (115)
Q Consensus 59 ~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~~~~~~~ 110 (115)
..+++|..+|+.++..|+... ....+++++.|||++|++|++++...-|+
T Consensus 75 ~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~DITe~k~a~~~~~~~~~~~ 124 (126)
T 3mjq_A 75 LEKKEGTSIPAKARIWQGKWH--NEPCLFAIIKDLSKEERASSPPFLEHHHH 124 (126)
T ss_dssp EECTTSCEEEEEEEEEEEESS--SSEEEEEEEEECC----------------
T ss_pred EEccCCCEEEEEEEEEeeeEC--CceEEEEEEEechHHHHhhcccchhhccc
Confidence 467999999999999988753 35678999999999999999988876665
No 57
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=98.02 E-value=7e-06 Score=57.17 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=31.2
Q ss_pred cCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhc
Q psy8547 62 ELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQ 100 (115)
Q Consensus 62 KdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E 100 (115)
++|..+|.+++++|++|++|+|.+++.+..|||+++.+.
T Consensus 113 ~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a~ 151 (152)
T 3mxq_A 113 GEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
T ss_dssp ---CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC----
T ss_pred CCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhcc
Confidence 577888999999999999999999999999999998764
No 58
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=98.01 E-value=1.6e-05 Score=49.09 Aligned_cols=32 Identities=9% Similarity=-0.062 Sum_probs=31.4
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEecc
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVT 42 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT 42 (115)
||+..|+.....|+++++|.+++++++..|||
T Consensus 87 ~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 87 EGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp TCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 99999999999999999999999999999998
No 59
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=97.97 E-value=2e-05 Score=48.13 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=31.3
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEecc
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVT 42 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT 42 (115)
||+.+|+.+...|+++++|.+.+++++.+|||
T Consensus 94 ~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 94 EEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp GTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 99999999999999999999999999999998
No 60
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=97.97 E-value=1.6e-05 Score=49.45 Aligned_cols=38 Identities=32% Similarity=0.645 Sum_probs=35.5
Q ss_pred ceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccc
Q psy8547 59 DMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNT 96 (115)
Q Consensus 59 ~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~ 96 (115)
.++++|+.+|+.+++.|+.++.|.+..+++++.|||++
T Consensus 101 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 101 FYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred EECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 46899999999999999999999999999999999975
No 61
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=97.96 E-value=2e-05 Score=48.12 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=32.7
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecc
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVT 94 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT 94 (115)
...+++|..+|+.++++|+++++|.+.++++++.|||
T Consensus 78 ~~~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 78 CFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEEC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEEcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 3467999999999999999999999999999999998
No 62
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=97.89 E-value=3.1e-05 Score=47.29 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=34.4
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecc
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVT 94 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT 94 (115)
+..+++|+.+|+.++..|+.++.|.+..++++..|||
T Consensus 89 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 89 RVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp EECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEEcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 3467999999999999999999999999999999998
No 63
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=97.87 E-value=3.4e-05 Score=48.45 Aligned_cols=41 Identities=12% Similarity=0.055 Sum_probs=35.4
Q ss_pred eeceecCCceeEEEEEeEEeeCCC-CCEEEEEEEeeecccch
Q psy8547 57 YEDMQELGTPFWCLLDIVPIKNEK-REVVLYLASHKDVTNTK 97 (115)
Q Consensus 57 ~~~yrKdGs~f~~~~~i~pirde~-G~v~~~i~~~~DIT~~k 97 (115)
++..+|||+.+|+.++.+|++|+. |.+.+++++..||++.+
T Consensus 79 ~r~~~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 79 YKFRAKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp EEEECSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSCC
T ss_pred EEEEEcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEeccccC
Confidence 345689999999999999999986 56788999999999875
No 64
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=97.84 E-value=1.9e-05 Score=57.75 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=38.6
Q ss_pred eecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhccC
Q psy8547 60 MQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNGE 106 (115)
Q Consensus 60 yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~~~ 106 (115)
++++|. |..++++||+|++|++.+++.++.|||+++++|+++++.
T Consensus 104 ~~~~g~--~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l 148 (233)
T 3vol_A 104 LNLGGR--RFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQL 148 (233)
T ss_dssp EEETTE--EEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred EEECCE--EEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHH
Confidence 455664 568999999999999999999999999999999876643
No 65
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=97.82 E-value=2.3e-05 Score=57.22 Aligned_cols=38 Identities=24% Similarity=0.228 Sum_probs=34.5
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhh
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMA 50 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~ 50 (115)
+|. |+.++++||+|++|++.+++++++|||+++++++.
T Consensus 107 ~g~--~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~e 144 (233)
T 3vol_A 107 GGR--RFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQE 144 (233)
T ss_dssp TTE--EEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHH
T ss_pred CCE--EEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHH
Confidence 664 67899999999999999999999999999998873
No 66
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.80 E-value=3.4e-05 Score=60.11 Aligned_cols=45 Identities=9% Similarity=0.106 Sum_probs=41.0
Q ss_pred eeceecCCceeEEEEEeEEeeCC-CCCEEEEEEEeeecccchhhch
Q psy8547 57 YEDMQELGTPFWCLLDIVPIKNE-KREVVLYLASHKDVTNTKMAQM 101 (115)
Q Consensus 57 ~~~yrKdGs~f~~~~~i~pirde-~G~v~~~i~~~~DIT~~k~~E~ 101 (115)
++.++|||+..|+..+..|++|+ .|++..++++..|||+++.+++
T Consensus 316 yR~~~kdG~~vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~~ 361 (361)
T 4f3l_A 316 YRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAE 361 (361)
T ss_dssp EEEECTTSEEEEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHHC
T ss_pred EEEEecCCCEEEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhcC
Confidence 45678999999999999999998 8999999999999999988763
No 67
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=97.75 E-value=4.2e-05 Score=49.71 Aligned_cols=34 Identities=18% Similarity=0.424 Sum_probs=30.7
Q ss_pred eecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEe
Q psy8547 7 TNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKD 40 (115)
Q Consensus 7 ~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~D 40 (115)
..++ ||+.+|+.++++|+++++|++.+++++++|
T Consensus 115 ~~~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 115 VNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred EEECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 3445 999999999999999999999999999876
No 68
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=97.67 E-value=0.0001 Score=46.13 Aligned_cols=35 Identities=9% Similarity=0.003 Sum_probs=31.1
Q ss_pred CCCceeEEEEEEEeeCCC-CCEEEEEEEEEeccchh
Q psy8547 11 QRTPFWCLLDIVPIKNEK-REVVLYLASHKDVTNTK 45 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~-G~~~~fi~~~~DIT~~k 45 (115)
||+.+|+.++++|++|+. |.+.+++++..|||+.+
T Consensus 85 dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 85 DGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp SSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSCC
T ss_pred CCCEEEEEEEEEEEECCCCCeeeEEEEEEEeccccC
Confidence 999999999999999986 56777889999999865
No 69
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=97.66 E-value=8.5e-05 Score=48.21 Aligned_cols=34 Identities=18% Similarity=0.412 Sum_probs=31.7
Q ss_pred ceecCCceeEEEEEeEEeeCCCCCEEEEEEEeee
Q psy8547 59 DMQELGTPFWCLLDIVPIKNEKREVVLYLASHKD 92 (115)
Q Consensus 59 ~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~D 92 (115)
.++|||+.+|+.++++|+++++|++.++++++.|
T Consensus 116 ~~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 116 NFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp EECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred EECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 4689999999999999999999999999999876
No 70
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=97.65 E-value=8.6e-05 Score=47.70 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=29.7
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecc
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVT 94 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT 94 (115)
..++|||+.||+.++++|++++. ...++++++|||
T Consensus 96 ~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DIT 130 (130)
T 1d06_A 96 SGQRKDGSTFPMKLAVGEMRSGG--ERFFTGFIRDLT 130 (130)
T ss_dssp EEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC
T ss_pred EEEeCCCCEEEEEEEEEEEEECC--eEEEEEEEEECc
Confidence 34799999999999999998743 346899999998
No 71
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.64 E-value=6.6e-05 Score=59.15 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=35.5
Q ss_pred eeceecCCceeEEEEEeEEeeCC-CCCEEEEEEEeeecccchh
Q psy8547 57 YEDMQELGTPFWCLLDIVPIKNE-KREVVLYLASHKDVTNTKM 98 (115)
Q Consensus 57 ~~~yrKdGs~f~~~~~i~pirde-~G~v~~~i~~~~DIT~~k~ 98 (115)
++.++|||+..|+..+.++++|. .|++..++++..|||++|+
T Consensus 344 yR~~~kdG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 344 YKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred EEEEccCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 45678999999999999999998 8999999999999999985
No 72
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=97.62 E-value=0.00011 Score=47.11 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=28.3
Q ss_pred eecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEecc
Q psy8547 7 TNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVT 42 (115)
Q Consensus 7 ~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT 42 (115)
...+ ||+.||+.++++|++++. ..+++++.+|||
T Consensus 96 ~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DIT 130 (130)
T 1d06_A 96 SGQRKDGSTFPMKLAVGEMRSGG--ERFFTGFIRDLT 130 (130)
T ss_dssp EEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC
T ss_pred EEEeCCCCEEEEEEEEEEEEECC--eEEEEEEEEECc
Confidence 3456 999999999999998743 356899999998
No 73
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=97.57 E-value=0.00014 Score=45.03 Aligned_cols=38 Identities=18% Similarity=0.022 Sum_probs=26.3
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhh
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMA 50 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~ 50 (115)
+|+.+|+.+.+.|+... ...+++++.+|||++|++++.
T Consensus 79 ~g~~~~~~~~~~~~~~~--~~~~~~~~~~DITe~k~a~~~ 116 (126)
T 3mjq_A 79 EGTSIPAKARIWQGKWH--NEPCLFAIIKDLSKEERASSP 116 (126)
T ss_dssp TSCEEEEEEEEEEEESS--SSEEEEEEEEECC--------
T ss_pred CCCEEEEEEEEEeeeEC--CceEEEEEEEechHHHHhhcc
Confidence 99999999999988763 356789999999999998875
No 74
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=97.55 E-value=0.00014 Score=46.64 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=26.9
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccch
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNT 44 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~ 44 (115)
+|. |+.++++||+|++|++.+++.+++|||++
T Consensus 90 ~~~--~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 90 GGR--RFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp TTE--EEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred CCE--EEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 565 44789999999999999999999999974
No 75
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.49 E-value=0.00018 Score=55.93 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=36.3
Q ss_pred CCCceeEEEEEEEeeCC-CCCEEEEEEEEEeccchhhhh
Q psy8547 11 QRTPFWCLLDIVPIKNE-KREVVLYLASHKDVTNTKMAQ 48 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de-~G~~~~fi~~~~DIT~~k~~e 48 (115)
||+..|+.....|++|+ +|++.+++++.+|||+++..+
T Consensus 322 dG~~vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 322 GQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp TSEEEEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred CCCEEEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 99999999999999998 899999999999999998865
No 76
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=97.47 E-value=0.00012 Score=47.55 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=25.1
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhh
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMA 50 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~ 50 (115)
+|..+|+.+.+.|+ +++|.+. ++++++|||+++++++.
T Consensus 125 ~g~~~~~~~~~~~~-~~~g~~~-~~~~~~DiT~~~~~e~~ 162 (167)
T 1v9y_A 125 DGSKIWTRFALSKV-SAEGKVY-YLALVRDASVEMAQKEQ 162 (167)
T ss_dssp TSCEEEEEEEEEEE-EETTEEE-EEEEEEC----------
T ss_pred CCcEEEEEEEEEEE-ecCCCEE-EEEEEecCcHHHHHHHH
Confidence 99999999999999 5677765 99999999999988764
No 77
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.31 E-value=0.00033 Score=55.12 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=31.2
Q ss_pred CCCceeEEEEEEEeeCC-CCCEEEEEEEEEeccchhh
Q psy8547 11 QRTPFWCLLDIVPIKNE-KREVVLYLASHKDVTNTKM 46 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de-~G~~~~fi~~~~DIT~~k~ 46 (115)
||+..|+.....|++|+ +|++.+++++.+|||++|+
T Consensus 350 dG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 350 DGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp TSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred CCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 99999999999999998 8999999999999999985
No 78
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=97.25 E-value=0.00032 Score=44.55 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=25.7
Q ss_pred eceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecc
Q psy8547 58 EDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVT 94 (115)
Q Consensus 58 ~~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT 94 (115)
..++|||+.+|+.++++|+. +|. ++++++|||
T Consensus 86 ~~~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 86 TVWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp EEECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred EEEecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 34789999999999999996 565 678999998
No 79
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=97.17 E-value=0.00077 Score=43.07 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=27.8
Q ss_pred eecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccc
Q psy8547 60 MQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNT 96 (115)
Q Consensus 60 yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~ 96 (115)
.+.+|.. ..++++||+|++|++.+++++++|||+.
T Consensus 87 ~~~~~~~--~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 87 LNLGGRR--FSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp EEETTEE--EEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred EEECCEE--EEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 3445553 4789999999999999999999999974
No 80
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=97.09 E-value=0.0041 Score=48.53 Aligned_cols=88 Identities=14% Similarity=0.160 Sum_probs=65.5
Q ss_pred CCCceeEEEEEEEeeCC---------CCCEEEEEEEEEeccchhhh--h-----hh--------c---------------
Q psy8547 11 QRTPFWCLLDIVPIKNE---------KREVVLYLASHKDVTNTKMA--Q-----MA--------D--------------- 51 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de---------~G~~~~fi~~~~DIT~~k~~--e-----~~--------~--------------- 51 (115)
.+.+||+.++..|+.++ .|..++++++..+++..... + .. +
T Consensus 99 ~~~p~~l~~~~~~~~~e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~p~e~~~~~~~~fi~r~~~dG~~~yvn~~~~~lLG 178 (339)
T 3rty_A 99 SYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALG 178 (339)
T ss_dssp CEEEEEEEEEEEECCCC----------CCCEEEEEEEEECCCSCSSTTBBCCSSCCEEEEEEETTCBEEEECTTHHHHHC
T ss_pred cceeEEEEEEEeccccccccccccccCCceEEEEEEcccCCccccccchhhccCCceEEEEECCCCeEEEcChhhhcccC
Confidence 55678888888898887 78888899999999864332 1 00 0
Q ss_pred --------------------------------CCCC--------ceeceecCCceeEEEEEeEEeeCCC-CCEEEEEEEe
Q psy8547 52 --------------------------------NGEG--------DYEDMQELGTPFWCLLDIVPIKNEK-REVVLYLASH 90 (115)
Q Consensus 52 --------------------------------~~~e--------~~~~yrKdGs~f~~~~~i~pirde~-G~v~~~i~~~ 90 (115)
+|+. .++.++|||+..|+..+.++++|.. |++...+++.
T Consensus 179 Y~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG~~vWlet~~~~~~np~s~~~~~II~~h 258 (339)
T 3rty_A 179 YLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHH 258 (339)
T ss_dssp CCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTSCEEEEEEEEEEEECTTTCSEEEEEEEE
T ss_pred CCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCCCEEEEEEEEEEEECCCCCCeeEEEEEE
Confidence 1121 2556789999999999999999975 5788889999
Q ss_pred eecccchh
Q psy8547 91 KDVTNTKM 98 (115)
Q Consensus 91 ~DIT~~k~ 98 (115)
..|+.+..
T Consensus 259 ~vi~~p~~ 266 (339)
T 3rty_A 259 RVFQGPKQ 266 (339)
T ss_dssp EEEECCSS
T ss_pred EECCCCCC
Confidence 98887754
No 81
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=96.89 E-value=0.003 Score=43.37 Aligned_cols=36 Identities=6% Similarity=0.037 Sum_probs=32.1
Q ss_pred ceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhh
Q psy8547 14 PFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQM 49 (115)
Q Consensus 14 ~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~ 49 (115)
..++.++.+||+|++|+++|.+.+++|||+.+..+.
T Consensus 103 ~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~ 138 (151)
T 2qkp_A 103 GKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDS 138 (151)
T ss_dssp TEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGG
T ss_pred CeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhh
Confidence 456789999999999999999999999999888764
No 82
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=96.88 E-value=0.0014 Score=51.23 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=33.3
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhh
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQM 49 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~ 49 (115)
+| .|+.++.+||+|++|+++|++.+++|||+.+..+.
T Consensus 316 ~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le~ 352 (369)
T 3cax_A 316 RE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEG 352 (369)
T ss_dssp TT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCS
T ss_pred CC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHHH
Confidence 66 57899999999999999999999999999988754
No 83
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=96.87 E-value=0.0015 Score=39.86 Aligned_cols=30 Identities=7% Similarity=0.148 Sum_probs=25.3
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEecc
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVT 42 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT 42 (115)
||+.+|+.++++|+.++.+ .+++++.+|||
T Consensus 89 ~g~~~~~~~~~~~~~~~~~--~~~~~~~~DIT 118 (118)
T 3olo_A 89 SGRIFLVEMSLTFLEDQER--RFSCVFVREKS 118 (118)
T ss_dssp TCCEEEEEEEEEEEEETTE--EEEEEEEEEC-
T ss_pred CCCEEEEEEEEEEEEECCc--cEEEEEEEeCC
Confidence 9999999999999998643 46779999997
No 84
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=96.80 E-value=0.0016 Score=40.78 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=26.7
Q ss_pred ceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecc
Q psy8547 59 DMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVT 94 (115)
Q Consensus 59 ~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT 94 (115)
..+|||+.+|+.++..|+.+ .|.. .+++++.|||
T Consensus 93 ~~~~dG~~~~~~~~~~~~~~-~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 93 YERRDGSTMSVEVHLLRFNL-EGED-RFLAISRDIT 126 (126)
T ss_dssp EECTTSCEEEEEEEEEEEEE-TTEE-EEEEEEEEC-
T ss_pred EEeCCCCEEEEEEEeEEEec-CCcE-EEEEEEEeCC
Confidence 35899999999999999854 4443 5789999998
No 85
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=96.78 E-value=0.0018 Score=39.51 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=28.0
Q ss_pred ceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecc
Q psy8547 59 DMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVT 94 (115)
Q Consensus 59 ~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT 94 (115)
..+|+|+.+|+.++++|+.++.+ ..+++++.|||
T Consensus 85 ~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~DIT 118 (118)
T 3olo_A 85 YRSQSGRIFLVEMSLTFLEDQER--RFSCVFVREKS 118 (118)
T ss_dssp EECTTCCEEEEEEEEEEEEETTE--EEEEEEEEEC-
T ss_pred EEccCCCEEEEEEEEEEEEECCc--cEEEEEEEeCC
Confidence 46899999999999999987543 46789999997
No 86
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=96.68 E-value=0.0027 Score=49.58 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=35.0
Q ss_pred ecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchh
Q psy8547 61 QELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMA 102 (115)
Q Consensus 61 rKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~ 102 (115)
+++| .++.++.+||+|++|++++++.++.|||+.++.|..
T Consensus 314 ~~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le~~ 353 (369)
T 3cax_A 314 RLRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEGE 353 (369)
T ss_dssp EETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCSC
T ss_pred eeCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHHHH
Confidence 4556 477889999999999999999999999999988765
No 87
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=96.66 E-value=0.0053 Score=42.09 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=53.1
Q ss_pred EeeCCCCCEEEEEEE---EEeccchhhhhhhc-----------------------CCCCc-eece-ecCCceeEEEEEeE
Q psy8547 23 PIKNEKREVVLYLAS---HKDVTNTKMAQMAD-----------------------NGEGD-YEDM-QELGTPFWCLLDIV 74 (115)
Q Consensus 23 Pi~de~G~~~~fi~~---~~DIT~~k~~e~~~-----------------------~~~e~-~~~y-rKdGs~f~~~~~i~ 74 (115)
-+-|++|.+++|-.. ...++.+ ..+..- +++.. ...+ .+.|.-.++.++..
T Consensus 33 ~~vD~~g~I~~~N~a~~~~~~i~g~-~~~~iGr~v~~~~~~~~~~~v~~i~~~l~~g~~~~~~~~~~~~~~~~~v~v~~~ 111 (151)
T 2qkp_A 33 TFVNKDDIFQYYNDSVPAAEMVFKR-TPSQVGRNVELCHPPKVLDKVKKVFELLRNGQRDKVNMWFQSERLGKFVYVTYA 111 (151)
T ss_dssp EEEETTSBEEEECCCSCGGGCSSCC-CGGGTTSBGGGSSCHHHHHHHHHHHHHHHTTSBSEEEEEEEETTTTEEEEEEEE
T ss_pred EEEcCCCeEEEEeCCCchhhhhcCC-CHHHcCCCHHHhCCHHHHHHHHHHHHHHHcCCccEEEEEEecCCCCeEEEEEEE
Confidence 357889999888776 5677762 212100 12211 1122 22321345688999
Q ss_pred EeeCCCCCEEEEEEEeeecccchhhchhhcc
Q psy8547 75 PIKNEKREVVLYLASHKDVTNTKMAQMADNG 105 (115)
Q Consensus 75 pirde~G~v~~~i~~~~DIT~~k~~E~~~~~ 105 (115)
||+|++|++++.+.++.|||+.+..|...++
T Consensus 112 Pi~d~~G~~~G~vev~~Dit~l~~le~~r~~ 142 (151)
T 2qkp_A 112 AVRDQAGDFQGVLEYVQDIKPFFELDSEFNR 142 (151)
T ss_dssp EEECTTCCEEEEEEEEEECGGGGGGGGC---
T ss_pred EEECCCCCEEEEEEEEEECHHHHhhhhhhhc
Confidence 9999999999999999999999888876554
No 88
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=96.64 E-value=0.0017 Score=40.31 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=29.0
Q ss_pred ceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecc
Q psy8547 59 DMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVT 94 (115)
Q Consensus 59 ~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT 94 (115)
..+|||+.||+.++++|++++.+. .+++++.|++
T Consensus 80 ~~~~dG~~~~v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 80 IISRSGEKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp ECCTTCCCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred EEecCCCEEEEEEEEEeeccCCcc--EEEEEEeecC
Confidence 368999999999999999986653 6889999886
No 89
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=96.63 E-value=0.0028 Score=39.63 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=24.1
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEecc
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVT 42 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT 42 (115)
||+.+|+.++..|+.+ +|.. .++++.+|||
T Consensus 97 dG~~~~~~~~~~~~~~-~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 97 DGSTMSVEVHLLRFNL-EGED-RFLAISRDIT 126 (126)
T ss_dssp TSCEEEEEEEEEEEEE-TTEE-EEEEEEEEC-
T ss_pred CCCEEEEEEEeEEEec-CCcE-EEEEEEEeCC
Confidence 9999999999999854 4544 5789999998
No 90
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=96.49 E-value=0.005 Score=40.80 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=26.5
Q ss_pred ceecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecc
Q psy8547 59 DMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVT 94 (115)
Q Consensus 59 ~yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT 94 (115)
..+|||+.||++++++|+.++.+ .|+++++|..
T Consensus 91 ~~rkdG~~~~velsis~i~~~~~---~~v~~~~~~~ 123 (129)
T 3mfx_A 91 LICASGKAKDVELSISYIPGHEP---MFVMVMHDLE 123 (129)
T ss_dssp EECTTSCEEEEEEEEEEECSSSC---EEEEEEEEC-
T ss_pred EEcCCCCEEEEEEEEEEecCCCc---EEEEEEechh
Confidence 46899999999999999994333 4888888874
No 91
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.46 E-value=0.0038 Score=38.46 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=27.4
Q ss_pred cCCCceeEEEEEEEeeCCCCCEEEEEEEEEecc
Q psy8547 10 RQRTPFWCLLDIVPIKNEKREVVLYLASHKDVT 42 (115)
Q Consensus 10 rdG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT 42 (115)
++|+.+|+.++++|+++ +|. .+++.+++||+
T Consensus 85 ~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 85 VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 39999999999999999 887 68999999985
No 92
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=96.42 E-value=0.0033 Score=39.01 Aligned_cols=33 Identities=9% Similarity=0.004 Sum_probs=27.6
Q ss_pred ecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEecc
Q psy8547 8 NYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVT 42 (115)
Q Consensus 8 ~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT 42 (115)
..+ ||+.||+.++++|+.++.+. +|+++++|++
T Consensus 80 ~~~~dG~~~~v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 80 IISRSGEKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp ECCTTCCCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred EEecCCCEEEEEEEEEeeccCCcc--EEEEEEeecC
Confidence 345 99999999999999987653 6889999986
No 93
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=96.19 E-value=0.0022 Score=39.63 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=27.3
Q ss_pred CCC-ceeEEEEEEEeeCCCCCEEEEEEEEEecc
Q psy8547 11 QRT-PFWCLLDIVPIKNEKREVVLYLASHKDVT 42 (115)
Q Consensus 11 dG~-~fw~~~~i~Pi~de~G~~~~fi~~~~DIT 42 (115)
+|. ..|+.++++|+.++ |...+++++++|||
T Consensus 94 ~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 94 DAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp EEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred cCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 777 89999999999876 66678999999998
No 94
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=96.12 E-value=0.01 Score=39.24 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=25.7
Q ss_pred eeecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccc
Q psy8547 6 DTNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTN 43 (115)
Q Consensus 6 ~~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~ 43 (115)
....+ ||+.||++++++|+.++++ .|+++.+|...
T Consensus 89 ~~~~rkdG~~~~velsis~i~~~~~---~~v~~~~~~~~ 124 (129)
T 3mfx_A 89 TTLICASGKAKDVELSISYIPGHEP---MFVMVMHDLEH 124 (129)
T ss_dssp EEEECTTSCEEEEEEEEEEECSSSC---EEEEEEEEC--
T ss_pred EEEEcCCCCEEEEEEEEEEecCCCc---EEEEEEechhh
Confidence 34445 9999999999999994332 48888888754
No 95
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.06 E-value=0.0091 Score=36.66 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=27.5
Q ss_pred cCCceeEEEEEeEEeeCCCCCEEEEEEEeeecc
Q psy8547 62 ELGTPFWCLLDIVPIKNEKREVVLYLASHKDVT 94 (115)
Q Consensus 62 KdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT 94 (115)
++|+.+|+.++++|+.+ .|. .+++.++.||+
T Consensus 85 ~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 85 VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 79999999999999999 886 68999999985
No 96
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=95.88 E-value=0.0048 Score=45.88 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=35.0
Q ss_pred ceeEEEEEeEEeeCCCCCE-EEEEEEeeecccchhhchhhcc
Q psy8547 65 TPFWCLLDIVPIKNEKREV-VLYLASHKDVTNTKMAQMADNG 105 (115)
Q Consensus 65 s~f~~~~~i~pirde~G~v-~~~i~~~~DIT~~k~~E~~~~~ 105 (115)
...|..++++|+++..|.+ .++++++.|||++|++|+++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~~ 125 (349)
T 3a0r_A 84 GERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKR 125 (349)
T ss_dssp TTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTH
T ss_pred CceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHHH
Confidence 4457789999999998875 5899999999999999987764
No 97
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=95.66 E-value=0.021 Score=32.44 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=25.6
Q ss_pred CCCceeEEEEEEEeeCCCCC-EEEEEEEEEe
Q psy8547 11 QRTPFWCLLDIVPIKNEKRE-VVLYLASHKD 40 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~-~~~fi~~~~D 40 (115)
+|...|+.++++|+++++|. +.+++++++|
T Consensus 66 ~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 66 KFGERYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp EETTEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred cCCcEEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 67778999999999998765 6789998876
No 98
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=95.64 E-value=0.0056 Score=37.68 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=28.8
Q ss_pred eecCCc-eeEEEEEeEEeeCCCCCEEEEEEEeeecc
Q psy8547 60 MQELGT-PFWCLLDIVPIKNEKREVVLYLASHKDVT 94 (115)
Q Consensus 60 yrKdGs-~f~~~~~i~pirde~G~v~~~i~~~~DIT 94 (115)
..++|. .+|+.++++|+.++ |.+..+++++.|||
T Consensus 91 ~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 91 RSEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp EEEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred EeEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 456777 89999999999875 66778999999998
No 99
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=95.32 E-value=0.012 Score=43.63 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=32.2
Q ss_pred CCceeEEEEEEEeeCCCCCE-EEEEEEEEeccchhhhhh
Q psy8547 12 RTPFWCLLDIVPIKNEKREV-VLYLASHKDVTNTKMAQM 49 (115)
Q Consensus 12 G~~fw~~~~i~Pi~de~G~~-~~fi~~~~DIT~~k~~e~ 49 (115)
+...|+.+.++|++++.|.. .+++++.+|||+++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~ 121 (349)
T 3a0r_A 83 FGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEE 121 (349)
T ss_dssp BTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTT
T ss_pred cCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHH
Confidence 34457889999999999886 589999999999988766
No 100
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=94.55 E-value=0.063 Score=30.31 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=25.9
Q ss_pred ecCCceeEEEEEeEEeeCCCCC-EEEEEEEeee
Q psy8547 61 QELGTPFWCLLDIVPIKNEKRE-VVLYLASHKD 92 (115)
Q Consensus 61 rKdGs~f~~~~~i~pirde~G~-v~~~i~~~~D 92 (115)
.++|...|+.++++|++++.|. +..+++++.|
T Consensus 64 ~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 64 FYKFGERYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEETTEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred EEcCCcEEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 3466778999999999998665 6788888876
No 101
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=93.69 E-value=0.0094 Score=36.02 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=25.5
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEecc
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVT 42 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT 42 (115)
+| .|+.++++|+++ +|.+.+++++++|||
T Consensus 90 ~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 90 KD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp SS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred CC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 55 578889999998 899999999999998
No 102
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=93.55 E-value=0.05 Score=35.02 Aligned_cols=25 Identities=8% Similarity=0.181 Sum_probs=17.9
Q ss_pred eeceecCCceeEEEEEeEEeeCCCC
Q psy8547 57 YEDMQELGTPFWCLLDIVPIKNEKR 81 (115)
Q Consensus 57 ~~~yrKdGs~f~~~~~i~pirde~G 81 (115)
++.++|||+.+|+..+++++++..+
T Consensus 71 ~r~~~kdG~~~wve~~~~~v~~~~~ 95 (111)
T 2vlg_A 71 FRFIKKDHTIVWVEAAVEIVTTRAE 95 (111)
T ss_dssp EEEECTTSCEEEEEEEEEEC-----
T ss_pred EEEEcCCCCEEEEEEEEEEEecccC
Confidence 4456899999999999999999765
No 103
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=92.69 E-value=0.029 Score=33.76 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=26.4
Q ss_pred eecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecc
Q psy8547 60 MQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVT 94 (115)
Q Consensus 60 yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT 94 (115)
.+.+| .|+.+++.|+.+ .|++..+++++.|||
T Consensus 87 ~~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 87 ITIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp EESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred EEECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 34556 577889999998 888889999999998
No 104
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=91.25 E-value=0.029 Score=42.76 Aligned_cols=37 Identities=24% Similarity=0.088 Sum_probs=31.3
Q ss_pred EEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhcc
Q psy8547 68 WCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNG 105 (115)
Q Consensus 68 ~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~~ 105 (115)
+..++..|+++ +|++.+++.+++|||+.++.|++|+.
T Consensus 259 ~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL~~ 295 (305)
T 2ykf_A 259 TVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRALIS 295 (305)
Confidence 45667789987 57888999999999999999998753
No 105
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=90.09 E-value=0.047 Score=41.55 Aligned_cols=36 Identities=25% Similarity=0.091 Sum_probs=31.2
Q ss_pred eeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhhc
Q psy8547 15 FWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMAD 51 (115)
Q Consensus 15 fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~~ 51 (115)
.++.++.+|+++ +|++.+++.+++|||+.++.++.+
T Consensus 258 ~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL 293 (305)
T 2ykf_A 258 ATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRAL 293 (305)
Confidence 567888999997 588999999999999999988754
No 106
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=90.43 E-value=0.19 Score=32.17 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=13.9
Q ss_pred CCCceeEEEEEEEeeCCCCC
Q psy8547 11 QRTPFWCLLDIVPIKNEKRE 30 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~ 30 (115)
||+.+|++++++|+++..+.
T Consensus 77 dG~~~wve~~~~~v~~~~~~ 96 (111)
T 2vlg_A 77 DHTIVWVEAAVEIVTTRAER 96 (111)
T ss_dssp TSCEEEEEEEEEEC------
T ss_pred CCCEEEEEEEEEEEecccCC
Confidence 99999999999999998664
No 107
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=90.37 E-value=0.019 Score=39.04 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=26.2
Q ss_pred CCCceeEEEEEEEeeCCCCC----EEEEEEEEEeccchh
Q psy8547 11 QRTPFWCLLDIVPIKNEKRE----VVLYLASHKDVTNTK 45 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~----~~~fi~~~~DIT~~k 45 (115)
+|.. +.+.++|+++++|. +.+++.+++|||+.+
T Consensus 153 ~g~~--~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 153 NGQN--FLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp TTEE--EEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred CCeE--EEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 6754 56788999987776 889999999999876
No 108
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=89.21 E-value=0.89 Score=34.90 Aligned_cols=42 Identities=17% Similarity=0.032 Sum_probs=32.8
Q ss_pred eeceecCCceeEEEEEeEEeeCC-CCCEEEEEEEeeecccchh
Q psy8547 57 YEDMQELGTPFWCLLDIVPIKNE-KREVVLYLASHKDVTNTKM 98 (115)
Q Consensus 57 ~~~yrKdGs~f~~~~~i~pirde-~G~v~~~i~~~~DIT~~k~ 98 (115)
++.++|||+..|+....++++|. .+++-.+++...=++....
T Consensus 242 yR~~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~~~p~~ 284 (317)
T 4dj3_A 242 VRFCTQNGEYVILDSSWSSFVNPWSRKVSFIIGRHKVRTSPLN 284 (317)
T ss_dssp EEEECTTSCEEEEEEEEEEEECSSSCCEEEEEEEEEECCCCSS
T ss_pred EEEEccCCCEEEEEEEEEEEECCCCCcccEEEEEEEeccCCCC
Confidence 45678999999999999999997 4667777777775555443
No 109
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=89.06 E-value=0.82 Score=35.38 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=31.2
Q ss_pred CCCceeEEEEEEEeeCCC-CCEEEEEEEEEeccchhhh
Q psy8547 11 QRTPFWCLLDIVPIKNEK-REVVLYLASHKDVTNTKMA 47 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~-G~~~~fi~~~~DIT~~k~~ 47 (115)
||+..|++.+.+|++|+. |++-++|++.+.|+.+...
T Consensus 230 dG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~~~ 267 (339)
T 3rty_A 230 NGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQC 267 (339)
T ss_dssp TSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCSSS
T ss_pred CCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCCCC
Confidence 999999999999999986 4566777888888887653
No 110
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=88.95 E-value=0.83 Score=35.10 Aligned_cols=42 Identities=17% Similarity=-0.001 Sum_probs=35.9
Q ss_pred eeceecCCceeEEEEEeEEeeCC-CCCEEEEEEEeeecccchh
Q psy8547 57 YEDMQELGTPFWCLLDIVPIKNE-KREVVLYLASHKDVTNTKM 98 (115)
Q Consensus 57 ~~~yrKdGs~f~~~~~i~pirde-~G~v~~~i~~~~DIT~~k~ 98 (115)
++.++|||+..|+....++++|. .+++-++++...-++....
T Consensus 243 yR~~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~~gp~~ 285 (320)
T 4dj2_A 243 IRFCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLN 285 (320)
T ss_dssp EEEECSSSCEEEEECEEEEEECTTTCSEEEEEEEEEESSCCSS
T ss_pred EEEEccCCCEEEEEEEEEEEECCCCCCccEEEEEEEEccCCCC
Confidence 55678999999999999999986 6788899999988887654
No 111
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=88.08 E-value=1 Score=34.34 Aligned_cols=42 Identities=12% Similarity=-0.011 Sum_probs=35.6
Q ss_pred eeceecCCceeEEEEEeEEeeCC-CCCEEEEEEEeeecccchh
Q psy8547 57 YEDMQELGTPFWCLLDIVPIKNE-KREVVLYLASHKDVTNTKM 98 (115)
Q Consensus 57 ~~~yrKdGs~f~~~~~i~pirde-~G~v~~~i~~~~DIT~~k~ 98 (115)
++.++|||+..|+....++++|. .+++-.+++...-++....
T Consensus 232 yR~~~kdG~~vwvet~~~~~~np~s~~~e~ii~~h~v~~gp~~ 274 (309)
T 3gdi_A 232 IRFRTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGPLN 274 (309)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCSS
T ss_pred EEEEccCCCEEEEEEEEEEEECCCCCcccEEEEEEEEccCCCC
Confidence 55678999999999999999986 6778899999998887643
No 112
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=87.40 E-value=0.056 Score=36.62 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=27.0
Q ss_pred ecCCceeEEEEEeEEeeCCCCC----EEEEEEEeeecccchh
Q psy8547 61 QELGTPFWCLLDIVPIKNEKRE----VVLYLASHKDVTNTKM 98 (115)
Q Consensus 61 rKdGs~f~~~~~i~pirde~G~----v~~~i~~~~DIT~~k~ 98 (115)
+.+|.. ..++++|+++++|. +.+++.++.|||+.++
T Consensus 151 ~~~g~~--~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~~ 190 (190)
T 2jhe_A 151 VINGQN--FLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR 190 (190)
T ss_dssp EETTEE--EEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTCC
T ss_pred EECCeE--EEEEEEEEEecCCCCcceEEeEEEEEeccchhcC
Confidence 346654 45789999986666 8889999999998763
No 113
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=86.54 E-value=1.5 Score=28.56 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=25.3
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccc
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTN 43 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~ 43 (115)
.|+.-.......||++++|+++|++.+--++..
T Consensus 95 ~g~~g~~~~~~~PV~~~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 95 KGSLGSSLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EETTEEEEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred EccceeeEEEEEeEECCCCCEEEEEEEEEEhHH
Confidence 444445556667999999999999999887654
No 114
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=85.29 E-value=0.75 Score=28.36 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=19.4
Q ss_pred eEEEEEeEEeeCCCCCEEEEEEEeeecccc
Q psy8547 67 FWCLLDIVPIKNEKREVVLYLASHKDVTNT 96 (115)
Q Consensus 67 f~~~~~i~pirde~G~v~~~i~~~~DIT~~ 96 (115)
.|..+++.|+.+ | +++++.|||++
T Consensus 95 ~~~~~~~~p~~~--g----~v~~~~DITer 118 (118)
T 3fg8_A 95 MTIEVTAAADSG--A----LVVHFRDVTAE 118 (118)
T ss_dssp CEEEEEEEEETT--E----EEEEEEECSCC
T ss_pred eEEEEEEEEcCC--c----EEEEEEeccCC
Confidence 677888899864 3 78899999985
No 115
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=82.15 E-value=2.4 Score=32.44 Aligned_cols=37 Identities=16% Similarity=0.012 Sum_probs=31.7
Q ss_pred CCCceeEEEEEEEeeCC-CCCEEEEEEEEEeccchhhh
Q psy8547 11 QRTPFWCLLDIVPIKNE-KREVVLYLASHKDVTNTKMA 47 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de-~G~~~~fi~~~~DIT~~k~~ 47 (115)
||+..|++...++++|. .+++-++|+...-++...+.
T Consensus 249 dG~~vwvet~~~~~~np~s~~~e~II~~h~v~~gp~~~ 286 (320)
T 4dj2_A 249 NGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLNE 286 (320)
T ss_dssp SSCEEEEECEEEEEECTTTCSEEEEEEEEEESSCCSSC
T ss_pred CCCEEEEEEEEEEEECCCCCCccEEEEEEEEccCCCCC
Confidence 99999999999999997 57777888888888877654
No 116
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=81.87 E-value=2.3 Score=28.19 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=25.8
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchh
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTK 45 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k 45 (115)
.|+.-...-...||++++|+++|++.+-.++....
T Consensus 100 ~~~~g~~~~~~~PV~~~~g~viGvv~vg~~~~~~~ 134 (142)
T 3by8_A 100 RGFLAQALRVFTPIYDENHKQIGVVAIGLELSRVT 134 (142)
T ss_dssp CSSSSCEEEEEEEEECTTSCEEEEEEEEEEHHHHH
T ss_pred cCccEEEEEEEEeEEcCCCCEEEEEEEeEEHHHHH
Confidence 34444455566799998999999999988776543
No 117
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=81.07 E-value=3.1 Score=31.68 Aligned_cols=37 Identities=11% Similarity=0.007 Sum_probs=31.8
Q ss_pred CCCceeEEEEEEEeeCC-CCCEEEEEEEEEeccchhhh
Q psy8547 11 QRTPFWCLLDIVPIKNE-KREVVLYLASHKDVTNTKMA 47 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de-~G~~~~fi~~~~DIT~~k~~ 47 (115)
||+..|++...++++|. .+++-++|++..-++...+.
T Consensus 238 dG~~vwvet~~~~~~np~s~~~e~ii~~h~v~~gp~~~ 275 (309)
T 3gdi_A 238 NGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGPLNE 275 (309)
T ss_dssp TSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCSSS
T ss_pred CCCEEEEEEEEEEEECCCCCcccEEEEEEEEccCCCCC
Confidence 99999999999999997 56777888998888877654
No 118
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=78.09 E-value=4.7 Score=30.76 Aligned_cols=36 Identities=17% Similarity=0.008 Sum_probs=27.3
Q ss_pred CCCceeEEEEEEEeeCCC-CCEEEEEEEEEeccchhh
Q psy8547 11 QRTPFWCLLDIVPIKNEK-REVVLYLASHKDVTNTKM 46 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~-G~~~~fi~~~~DIT~~k~ 46 (115)
||+..|++...++++|.. +++-++|+...-++.+.+
T Consensus 248 dG~~vwvet~~~~~~np~s~~~e~II~~h~v~~~p~~ 284 (317)
T 4dj3_A 248 NGEYVILDSSWSSFVNPWSRKVSFIIGRHKVRTSPLN 284 (317)
T ss_dssp TSCEEEEEEEEEEEECSSSCCEEEEEEEEEECCCCSS
T ss_pred CCCEEEEEEEEEEEECCCCCcccEEEEEEEeccCCCC
Confidence 999999999999999985 445555566665555544
No 119
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=73.55 E-value=6.6 Score=25.37 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=25.5
Q ss_pred CCceeEEEEEeEEeeCCCCCEEEEEEEeeeccc
Q psy8547 63 LGTPFWCLLDIVPIKNEKREVVLYLASHKDVTN 95 (115)
Q Consensus 63 dGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~ 95 (115)
.|+..+.....+||++++|+++..+.+-.++..
T Consensus 95 ~g~~g~~~~~~~PV~~~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 95 KGSLGSSLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EETTEEEEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred EccceeeEEEEEeEECCCCCEEEEEEEEEEhHH
Confidence 344455566667999989999999999888764
No 120
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=70.10 E-value=24 Score=24.41 Aligned_cols=31 Identities=3% Similarity=0.099 Sum_probs=25.1
Q ss_pred eeEEEEEEEeeCCCCCEEEEEEEEEeccchh
Q psy8547 15 FWCLLDIVPIKNEKREVVLYLASHKDVTNTK 45 (115)
Q Consensus 15 fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k 45 (115)
-|+.....||++++|+++|++++.-++....
T Consensus 125 ~~~i~~~~pi~~~~g~~~Gvl~~~i~l~~l~ 155 (254)
T 3lif_A 125 VWVFVVSRRLETTDGKFFGVVVATIESEYFS 155 (254)
T ss_dssp CEEEEEEEEEECTTCCEEEEEEEEECHHHHH
T ss_pred cEEEEEEeeeeCCCCCEeEEEEEEECHHHHH
Confidence 4677888999999999999998887775433
No 121
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=63.11 E-value=9.6 Score=25.03 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=25.1
Q ss_pred CceeEEEEEeEEeeCCCCCEEEEEEEeeecccch
Q psy8547 64 GTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTK 97 (115)
Q Consensus 64 Gs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k 97 (115)
|+.....-..+||++++|+++..+++-.++....
T Consensus 101 ~~~g~~~~~~~PV~~~~g~viGvv~vg~~~~~~~ 134 (142)
T 3by8_A 101 GFLAQALRVFTPIYDENHKQIGVVAIGLELSRVT 134 (142)
T ss_dssp SSSSCEEEEEEEEECTTSCEEEEEEEEEEHHHHH
T ss_pred CccEEEEEEEEeEEcCCCCEEEEEEEeEEHHHHH
Confidence 4433445556799998899999999988876543
No 122
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=60.38 E-value=17 Score=24.70 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=27.6
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhh
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKM 46 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~ 46 (115)
+|. |+.....||++++|+++|+++.--++..-..
T Consensus 121 ~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~~l~~ 154 (217)
T 4dah_A 121 TGQ--PIFTICVPVLDSKRNVTDYLVAAIQIDYLKN 154 (217)
T ss_dssp TCS--EEEEEEEEEECTTSCEEEEEEEEEEHHHHHH
T ss_pred CCC--EEEEEEEEEECCCCCEEEEEEEEEcHHHHHH
Confidence 454 7788889999999999999998888776443
No 123
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=52.68 E-value=32 Score=23.23 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=40.9
Q ss_pred eCCCCCEEEE---EEEEEeccchhhhhhhcC-CCCcee-ce--ecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccch
Q psy8547 25 KNEKREVVLY---LASHKDVTNTKMAQMADN-GEGDYE-DM--QELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTK 97 (115)
Q Consensus 25 ~de~G~~~~f---i~~~~DIT~~k~~e~~~~-~~e~~~-~y--rKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k 97 (115)
.|++|.++.. .....|++++-.-..+.. +..... -| +..|. ++.....||++.+|+++++++.--++....
T Consensus 76 ~d~~G~~~~~~~~~~~~~~~~~r~~f~~a~~~~~~~is~~~~~~~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~~l~ 153 (217)
T 4dah_A 76 LNAKGDVTASTTELKTKVNLADRSFFIKAKETKKTVISDSYSSRITGQ--PIFTICVPVLDSKRNVTDYLVAAIQIDYLK 153 (217)
T ss_dssp EETTCBEEEESSCCSSCCBCTTSHHHHHHHHHCSCEECCCEECTTTCS--EEEEEEEEEECTTSCEEEEEEEEEEHHHHH
T ss_pred ECCCCcEEEecCCCCCCCCcchhHHHHHHHhcCCcEEeceEEcCCCCC--EEEEEEEEEECCCCCEEEEEEEEEcHHHHH
Confidence 5788887653 122234444433222221 222111 12 23444 556677899998999999999888877654
Q ss_pred h
Q psy8547 98 M 98 (115)
Q Consensus 98 ~ 98 (115)
.
T Consensus 154 ~ 154 (217)
T 4dah_A 154 N 154 (217)
T ss_dssp H
T ss_pred H
Confidence 3
No 124
>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}
Probab=41.04 E-value=61 Score=21.20 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=24.2
Q ss_pred CCCceeEEEEEEEeeCC---------CCCEEEEEEEEEeccc
Q psy8547 11 QRTPFWCLLDIVPIKNE---------KREVVLYLASHKDVTN 43 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de---------~G~~~~fi~~~~DIT~ 43 (115)
+|..+ ...+.|+.|+ +|++.|.+-+..+..+
T Consensus 88 ~g~~~--l~~~~Pi~n~~~C~~CH~~~~~vLG~l~v~~sl~~ 127 (134)
T 3b47_A 88 DGRHV--LSFIVPLANEVRCQSCHEQGARFNGAMLLTTSLEE 127 (134)
T ss_dssp --CCE--EEEEEEEECCTTGGGTSCTTCSEEEEEEEEEECST
T ss_pred CCcEE--EEEEEeccCCCCchhhhCCCCeEEEEEEEEEchHh
Confidence 66664 4789999999 9999999988887764
No 125
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=40.29 E-value=21 Score=25.79 Aligned_cols=23 Identities=4% Similarity=0.192 Sum_probs=18.4
Q ss_pred CCCceeEEEEEEEeeCCCCCEEEEEEE
Q psy8547 11 QRTPFWCLLDIVPIKNEKREVVLYLAS 37 (115)
Q Consensus 11 dG~~fw~~~~i~Pi~de~G~~~~fi~~ 37 (115)
+|.+| .+.|++|.+|++++|-+-
T Consensus 102 ~g~~~----i~fp~~d~~G~vvg~~~R 124 (255)
T 1nui_A 102 DGVMY----QVADYRDQNGNIVSQKVR 124 (255)
T ss_dssp TTEEE----EEEEEECTTSCEEEEEEE
T ss_pred CCcEE----EEEEEECCCCCEEEEEEE
Confidence 56655 678999999999998754
No 126
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=38.21 E-value=61 Score=21.51 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=22.6
Q ss_pred eEEEEEEEeeCCC-CCEEEEEEEEEeccch
Q psy8547 16 WCLLDIVPIKNEK-REVVLYLASHKDVTNT 44 (115)
Q Consensus 16 w~~~~i~Pi~de~-G~~~~fi~~~~DIT~~ 44 (115)
++.....||++.+ |+++|++++.-++..-
T Consensus 118 ~~i~~~~pi~~~~~g~~~Gvl~~~i~~~~l 147 (240)
T 3c8c_A 118 ILVSVATPVKDSATGQFLGSIFYDVSLAEL 147 (240)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEEEECHHHH
T ss_pred EEEEEEEEEEECCCCeEEEEEEEEEEHHHH
Confidence 5667788999976 9999999887666543
No 127
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=37.18 E-value=25 Score=27.09 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=17.5
Q ss_pred EEEEEeeCCCCCEEEEEEEEE
Q psy8547 19 LDIVPIKNEKREVVLYLASHK 39 (115)
Q Consensus 19 ~~i~Pi~de~G~~~~fi~~~~ 39 (115)
=-|-||+|..|++++|-+-.-
T Consensus 97 Ri~fPI~d~~G~vigF~gR~l 117 (329)
T 4edg_A 97 RIMFPLKNAQGRIVGYSGRTY 117 (329)
T ss_dssp EEEEEEECTTSCEEEEEEECS
T ss_pred EEEEEEECCCCCEEEEEeEEC
Confidence 357899999999999987543
No 128
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=36.22 E-value=29 Score=20.46 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=25.1
Q ss_pred eecCCceeEEEEEeEEeeCCCCCEEEEEEEeeecccchhhchhhccCCC
Q psy8547 60 MQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNGEGD 108 (115)
Q Consensus 60 yrKdGs~f~~~~~i~pirde~G~v~~~i~~~~DIT~~k~~E~~~~~~~~ 108 (115)
..++|..+|. ++..+|+|+.---.+..-.+....-+.++.-+-
T Consensus 7 ~~~~G~frfr------Lka~NGevI~sSe~Y~sk~~a~~gI~sVk~na~ 49 (64)
T 3bid_A 7 KDAKGEYRWR------LKAANHEIIAQGEGYTSKQNCQHAVDLLKSTTA 49 (64)
T ss_dssp ECTTSCEEEE------EECTTSCEEEECCCBSCHHHHHHHHHHHHTCCT
T ss_pred ECCCCCEEEE------EEeCCCCEEEECCCcCCHHHHHHHHHHHHHhCC
Confidence 3578999998 688999987722223333344444444544433
No 129
>2ggv_B NS3, non-structural protein 3; beta barrel, serine protease, viral protease, flavivirus, hydrolase; 1.80A {West nile virus} PDB: 2ijo_B
Probab=31.87 E-value=33 Score=24.62 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.7
Q ss_pred EEEEeeCCCCCEEEEEEEE
Q psy8547 20 DIVPIKNEKREVVLYLASH 38 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~~~ 38 (115)
+-|||.|.+|+++++-+.-
T Consensus 134 SGSPIin~~G~vvGLYGNG 152 (185)
T 2ggv_B 134 SGSPIVDKNGDVIGLYGNG 152 (185)
T ss_dssp TTCEEECTTSCEEEEEEEE
T ss_pred CCCceEcCCCcEEEEecce
Confidence 3589999999999987654
No 130
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=30.99 E-value=1.8e+02 Score=22.95 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=41.0
Q ss_pred ceeecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhhcCCC-CceeceecCCceeEEEEEeEEeeCCCC
Q psy8547 5 PDTNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNGE-GDYEDMQELGTPFWCLLDIVPIKNEKR 81 (115)
Q Consensus 5 ~~~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~~~~~-e~~~~yrKdGs~f~~~~~i~pirde~G 81 (115)
-..||| |...=||.+...-- ++|.+.|.+..+. .+++..+ ...|+ ..+..++-+|.+-.+.+-.-..|+..|
T Consensus 153 QIInY~~d~~~kW~~l~GI~~--~~~~v~G~mQLYS--~er~~sQ-~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 226 (365)
T 2xzh_A 153 QIINYRTDAKQKWLLLTGISA--QQNRVVGAMQLYS--VDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 226 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEEE--ETTEEEEEEEEEE--TTTTEEE-EECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred eEEEEEECCCCCEEEEEeEec--cCCccceeEEEEe--ecccccc-eeeeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 468999 99999998877643 4678888655554 3444433 33333 222334445554444444444444443
No 131
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=30.85 E-value=28 Score=21.88 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=14.5
Q ss_pred EEEEEeeCCCCCEEEEEE
Q psy8547 19 LDIVPIKNEKREVVLYLA 36 (115)
Q Consensus 19 ~~i~Pi~de~G~~~~fi~ 36 (115)
+...||-|++|+++|.+.
T Consensus 100 ~~~~~Vvd~~g~lvGiit 117 (136)
T 3lfr_A 100 NHMAIVIDEYGGVAGLVT 117 (136)
T ss_dssp CCEEEEECTTSCEEEEEE
T ss_pred CeEEEEEeCCCCEEEEEE
Confidence 356899999999998653
No 132
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A
Probab=30.48 E-value=36 Score=25.53 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=18.0
Q ss_pred EEEEeeCCCCCEEEEEEEEEe
Q psy8547 20 DIVPIKNEKREVVLYLASHKD 40 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~~~~D 40 (115)
.+-||+|++|+++||.++..|
T Consensus 114 ~~F~VknldGkV~GyAc~vgg 134 (264)
T 1kxf_A 114 RLFDVKNEDGDVIGHALAMEG 134 (264)
T ss_dssp CEEEEECTTCCEEEEEEEETT
T ss_pred ceeeeeccCCceEEEEEEEcC
Confidence 356999999999999988765
No 133
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=30.44 E-value=28 Score=22.82 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=16.3
Q ss_pred EEEEeeCCCCCEEEEEEEEEecc
Q psy8547 20 DIVPIKNEKREVVLYLASHKDVT 42 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~~~~DIT 42 (115)
+..||.|++|+++|++ ..+|+-
T Consensus 50 ~~~pVvd~~g~lvGii-t~~Dll 71 (170)
T 4esy_A 50 GCAPVVDQNGHLVGII-TESDFL 71 (170)
T ss_dssp SEEEEECTTSCEEEEE-EGGGGG
T ss_pred eEEEEEcCCccEEEEE-EHHHHH
Confidence 4579999999999876 344553
No 134
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=30.15 E-value=30 Score=21.36 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=14.4
Q ss_pred EEEEEeeCCCCCEEEEEE
Q psy8547 19 LDIVPIKNEKREVVLYLA 36 (115)
Q Consensus 19 ~~i~Pi~de~G~~~~fi~ 36 (115)
+...||-|++|+++|.+.
T Consensus 99 ~~~lpVvd~~g~~~Giit 116 (127)
T 3nqr_A 99 YHMAIVIDEFGGVSGLVT 116 (127)
T ss_dssp CCEEEEECTTSCEEEEEE
T ss_pred CeEEEEEeCCCCEEEEEE
Confidence 356799999999998663
No 135
>2fp7_B Serine protease NS3; flavivirus, NS3 protease, NS2B cofactor; HET: OAR; 1.68A {West nile virus} SCOP: b.47.1.3
Probab=30.04 E-value=27 Score=24.79 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=14.4
Q ss_pred EEEEeeCCCCCEEEEEEE
Q psy8547 20 DIVPIKNEKREVVLYLAS 37 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~~ 37 (115)
+-|||.|.+|+++++-+.
T Consensus 120 SGSPIin~~G~vVGLYGN 137 (172)
T 2fp7_B 120 SGSPIVDKNGDVIGLYGN 137 (172)
T ss_dssp TTCEEECTTSCEEEESCC
T ss_pred CCCceEccCCcEEEEecc
Confidence 358999999999987543
No 136
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=29.39 E-value=61 Score=22.39 Aligned_cols=30 Identities=7% Similarity=-0.015 Sum_probs=24.1
Q ss_pred eeEEEEEEEeeCCCCCEEEEEEEEEeccchh
Q psy8547 15 FWCLLDIVPIKNEKREVVLYLASHKDVTNTK 45 (115)
Q Consensus 15 fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k 45 (115)
-++.....||++ +|+++|++++--++..-.
T Consensus 144 ~~~i~~~~pi~~-~g~~~Gv~~~~i~l~~l~ 173 (274)
T 3lic_A 144 VLMITYAVPFGV-QPDYFGVTTVDLALDRLP 173 (274)
T ss_dssp SEEEEEEEEESC-TTCCCEEEEEEEEGGGHH
T ss_pred eEEEEEEEEEcc-CCEEEEEEEEEEEHHHHH
Confidence 567777889999 899999998887776543
No 137
>2yjl_A EXSB, exoenzyme S synthesis protein B; lipid-binding protein, pilotin; 1.81A {Pseudomonas aeruginosa}
Probab=27.92 E-value=29 Score=23.25 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=27.6
Q ss_pred cccceeecc-CCCceeEEEEEEEeeCCCCCEEE
Q psy8547 2 VTHPDTNYR-QRTPFWCLLDIVPIKNEKREVVL 33 (115)
Q Consensus 2 ~~~~~~~Yr-dG~~fw~~~~i~Pi~de~G~~~~ 33 (115)
.++-.+.|+ |+-|.-.++.++|+.-+.|++..
T Consensus 42 l~Va~t~Yrv~mLPL~Fs~rL~plq~aegeLYL 74 (125)
T 2yjl_A 42 QTIAERRYRVSGLPLRYAFDLEVDRLEGEALYL 74 (125)
T ss_dssp EEEEEEEEEESSSCEEEEEEEEHHHHTTCCEEE
T ss_pred EEeEeeEEEeccCcEEEEEecChhhhcCccEEE
Confidence 356678999 99999999999999999998843
No 138
>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral protein-prote complex; 1.50A {Dengue virus 2} SCOP: b.47.1.3 PDB: 1df9_A 2qid_A 1bef_A
Probab=27.90 E-value=31 Score=24.78 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=13.9
Q ss_pred EEEEeeCCCCCEEEEEE
Q psy8547 20 DIVPIKNEKREVVLYLA 36 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~ 36 (115)
+-|||.|.+|+++++-+
T Consensus 135 SGSPIin~~G~vvGLYG 151 (185)
T 2fom_B 135 SGSPIVDKKGKVVGLYG 151 (185)
T ss_dssp TTCEEECTTSCEEEETT
T ss_pred CCCceEccCCcEEEEec
Confidence 35899999999998653
No 139
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=27.64 E-value=74 Score=24.09 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=41.9
Q ss_pred eecCCceeEEEEEeEEeeCC-CCCEEEEEEEeeecccchhhchhhccCCCcccc
Q psy8547 60 MQELGTPFWCLLDIVPIKNE-KREVVLYLASHKDVTNTKMAQMADNGEGDYEDM 112 (115)
Q Consensus 60 yrKdGs~f~~~~~i~pirde-~G~v~~~i~~~~DIT~~k~~E~~~~~~~~~~~~ 112 (115)
.+-.++.+...+.-+||.|. .|+|++|+-+....-..---=++++.-.+.|++
T Consensus 127 ~~s~~g~~~lLvRr~pIid~~TGEVlG~Ly~gvVLnnNfslve~l~~~snsdnv 180 (270)
T 3c38_A 127 TPSEGKSVHILMRRSSLIEAGTGQVVGYLYVGIVLNDNFALLENIRSGSNSENL 180 (270)
T ss_dssp ECCSSSCEEEEEEEEEECCCC-CCCCEEEEEEEECTTCHHHHHHHHHHTTCSEE
T ss_pred eccCCCceEEEEEccceecCCCCcEEEEEEEEEEecCcHHHHHHHHhcCCcceE
Confidence 46778889999999999985 589999999888877666666667777777764
No 140
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=26.94 E-value=1e+02 Score=22.67 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=40.9
Q ss_pred eecCCceeEEEEEeEEeeCC-CCCEEEEEEEeeecccchhhchhhccCCCcccc
Q psy8547 60 MQELGTPFWCLLDIVPIKNE-KREVVLYLASHKDVTNTKMAQMADNGEGDYEDM 112 (115)
Q Consensus 60 yrKdGs~f~~~~~i~pirde-~G~v~~~i~~~~DIT~~k~~E~~~~~~~~~~~~ 112 (115)
..-.++.+...+.=+||.|. .|+|++|+-+..-.-..---=++++.-.|.|++
T Consensus 108 ~~s~~g~~~lLvRR~pIi~~~tGeVlG~Ly~gvVLnnNfslve~l~~~snsd~i 161 (221)
T 2hje_A 108 VMTSIGSRHMLVRRVPILDPSTGEVLGFSFNAVVLDNNFALMEKLKSESNVDNV 161 (221)
T ss_dssp EEETTEEEEEEEEEEEEEETTTTEEEEEEEEEEECTTCHHHHHHHHHHTTCSEE
T ss_pred eccCCCceEEEEEccceecCCCCcEEEEEEEEEEecCcHHHHHHHHhcCCcceE
Confidence 46678888999999999875 689999998887776665555567777777764
No 141
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=26.68 E-value=47 Score=25.50 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=17.7
Q ss_pred EEEEEEeeCCCCCEEEEEEEEE
Q psy8547 18 LLDIVPIKNEKREVVLYLASHK 39 (115)
Q Consensus 18 ~~~i~Pi~de~G~~~~fi~~~~ 39 (115)
.--+-||+|.+|++++|-+-..
T Consensus 107 ~Ri~fPI~d~~G~vigf~gR~l 128 (338)
T 1dd9_A 107 ERVMFPIRDKRGRVIGFGGRVL 128 (338)
T ss_dssp SEEEEEEECTTSCEEEEEEEES
T ss_pred CEEEEEEECCCCcEEEEEEEeC
Confidence 3457899999999999987543
No 142
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=26.51 E-value=51 Score=20.36 Aligned_cols=18 Identities=6% Similarity=0.065 Sum_probs=13.5
Q ss_pred EEEEEeeCCCCCEEEEEE
Q psy8547 19 LDIVPIKNEKREVVLYLA 36 (115)
Q Consensus 19 ~~i~Pi~de~G~~~~fi~ 36 (115)
....||-|++|+++|.+.
T Consensus 99 ~~~~pVvd~~g~~~Giit 116 (129)
T 3jtf_A 99 NHLAIVIDEHGGISGLVT 116 (129)
T ss_dssp CCEEEEECC-CCEEEEEE
T ss_pred CeEEEEEeCCCCEEEEEE
Confidence 357899999999998653
No 143
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=26.43 E-value=72 Score=21.74 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=22.0
Q ss_pred eEEEEEEEeeCCCCCEEEEEEEEEeccc
Q psy8547 16 WCLLDIVPIKNEKREVVLYLASHKDVTN 43 (115)
Q Consensus 16 w~~~~i~Pi~de~G~~~~fi~~~~DIT~ 43 (115)
++.....||+ .+|+++|++++--++..
T Consensus 128 ~~i~~~~pi~-~~g~~~Gvv~~~i~l~~ 154 (260)
T 3by9_A 128 RGYYYAYPVI-YAAEILGVIVVKMDLSA 154 (260)
T ss_dssp EEEEEEEEEE-ETTEEEEEEEEEECSHH
T ss_pred EEEEEEEEEc-cCCeEEEEEEEEEeHHH
Confidence 5667788999 78999999988877664
No 144
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=26.29 E-value=53 Score=20.25 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=14.4
Q ss_pred EEEEEeeCCCCCEEEEEE
Q psy8547 19 LDIVPIKNEKREVVLYLA 36 (115)
Q Consensus 19 ~~i~Pi~de~G~~~~fi~ 36 (115)
....||-|++|+++|.+.
T Consensus 102 ~~~~~Vvd~~g~~vGivt 119 (130)
T 3i8n_A 102 LQLALVVDEYGTVLGLVT 119 (130)
T ss_dssp CCEEEEECTTSCEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEE
Confidence 356899999999998653
No 145
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=26.12 E-value=53 Score=20.12 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=13.1
Q ss_pred EEEeeCCCCCEEEEEE
Q psy8547 21 IVPIKNEKREVVLYLA 36 (115)
Q Consensus 21 i~Pi~de~G~~~~fi~ 36 (115)
..||-|++|+++|.+.
T Consensus 101 ~lpVvd~~g~~~Giit 116 (128)
T 3gby_A 101 VVPLADEDGRYEGVVS 116 (128)
T ss_dssp EEEEECTTCBEEEEEE
T ss_pred EEEEECCCCCEEEEEE
Confidence 4699999999988764
No 146
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=26.07 E-value=53 Score=20.39 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=14.5
Q ss_pred EEEEEeeCCCCCEEEEEE
Q psy8547 19 LDIVPIKNEKREVVLYLA 36 (115)
Q Consensus 19 ~~i~Pi~de~G~~~~fi~ 36 (115)
....||-|++|+++|.+.
T Consensus 100 ~~~~~Vvd~~g~lvGiit 117 (130)
T 3hf7_A 100 KKVGLVVDEYGDIQGLVT 117 (130)
T ss_dssp CCEEEEECTTSCEEEEEE
T ss_pred CeEEEEEcCCCCEEEEee
Confidence 357899999999998653
No 147
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=25.88 E-value=61 Score=19.40 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=13.7
Q ss_pred EEEEeeCCCCCEEEEEE
Q psy8547 20 DIVPIKNEKREVVLYLA 36 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~ 36 (115)
...||.|++|+++|++.
T Consensus 94 ~~l~Vvd~~g~~~Givt 110 (122)
T 3kpb_A 94 SGVPVVDDYRRVVGIVT 110 (122)
T ss_dssp SEEEEECTTCBEEEEEE
T ss_pred CeEEEECCCCCEEEEEe
Confidence 45799999999988764
No 148
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=25.64 E-value=1.1e+02 Score=18.81 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=18.9
Q ss_pred EEEEEEeeCCCCCEEEEEEEEEe
Q psy8547 18 LLDIVPIKNEKREVVLYLASHKD 40 (115)
Q Consensus 18 ~~~i~Pi~de~G~~~~fi~~~~D 40 (115)
.+...|++. +|+++|.+.+...
T Consensus 92 s~~~vPl~~-~~~~iGvl~~~~~ 113 (151)
T 3hcy_A 92 ALGFFPLVT-EGRLIGKFMTYYD 113 (151)
T ss_dssp EEEEEEEES-SSSEEEEEEEEES
T ss_pred heEEeceEE-CCEEEEEEEEecC
Confidence 567899998 9999999988864
No 149
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=25.21 E-value=1.3e+02 Score=18.69 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=19.4
Q ss_pred EEEEEEEeeCCCCCEEEEEEEEEe
Q psy8547 17 CLLDIVPIKNEKREVVLYLASHKD 40 (115)
Q Consensus 17 ~~~~i~Pi~de~G~~~~fi~~~~D 40 (115)
..+-+.|+... |+++|++.+...
T Consensus 118 ~s~l~vPl~~~-~~~iGvl~~~~~ 140 (181)
T 3e0y_A 118 NSMLSFPIGDK-KEVYGVINLNTT 140 (181)
T ss_dssp EEEEEEEEECS-SCEEEEEEEEES
T ss_pred ceEEEEEEEeC-CeEEEEEEEeeC
Confidence 56778899986 999999998875
No 150
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=24.65 E-value=83 Score=23.21 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=21.2
Q ss_pred EEEEEEEeeCCCCCEEEEEEEEEe
Q psy8547 17 CLLDIVPIKNEKREVVLYLASHKD 40 (115)
Q Consensus 17 ~~~~i~Pi~de~G~~~~fi~~~~D 40 (115)
..+.+.|+.+.+|+++|++.+...
T Consensus 120 ~s~l~vPl~~~~g~~iGvl~l~~~ 143 (398)
T 1ykd_A 120 YTMLALPLLSEQGRLVAVVQLLNK 143 (398)
T ss_dssp SCEEEEEEECSSCCEEEEEEEEEE
T ss_pred ceEEEEEEECCCCCEEEEEEEecc
Confidence 357789999999999999999887
No 151
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=24.36 E-value=59 Score=20.90 Aligned_cols=18 Identities=6% Similarity=-0.047 Sum_probs=14.7
Q ss_pred EEEEEeeCCCCCEEEEEE
Q psy8547 19 LDIVPIKNEKREVVLYLA 36 (115)
Q Consensus 19 ~~i~Pi~de~G~~~~fi~ 36 (115)
....||-|++|+++|.+.
T Consensus 133 ~~~~~Vvd~~g~~~Givt 150 (156)
T 3oi8_A 133 NHMAIVIDEYGGTSGLVT 150 (156)
T ss_dssp CCEEEEECTTSSEEEEEE
T ss_pred CeEEEEECCCCCEEEEEE
Confidence 457899999999998763
No 152
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=24.08 E-value=47 Score=21.72 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=14.8
Q ss_pred EEEEeeCCCCCEEEEEEEEEec
Q psy8547 20 DIVPIKNEKREVVLYLASHKDV 41 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~~~~DI 41 (115)
+..||.|++|+++|++. .+|+
T Consensus 49 s~~pVvd~~~~lvGiit-~~Di 69 (156)
T 3k6e_A 49 TRVPVVTDEKQFVGTIG-LRDI 69 (156)
T ss_dssp SEEEEECC-CBEEEEEE-HHHH
T ss_pred cEEEEEcCCCcEEEEEE-ecch
Confidence 56799999999988764 3444
No 153
>2o99_A Acetate operon repressor; ICLR, DNA binding protein; HET: MSE; 1.70A {Escherichia coli} SCOP: d.110.2.2 PDB: 2o9a_A 1td5_A
Probab=24.01 E-value=70 Score=21.44 Aligned_cols=22 Identities=18% Similarity=-0.004 Sum_probs=17.9
Q ss_pred EEEEEEeeCCCCCEEEEEEEEE
Q psy8547 18 LLDIVPIKNEKREVVLYLASHK 39 (115)
Q Consensus 18 ~~~i~Pi~de~G~~~~fi~~~~ 39 (115)
.-...||+|.+|.+++-+++.-
T Consensus 127 ~~iAaPv~~~~g~~~aalsv~~ 148 (182)
T 2o99_A 127 RCLAACIFDEHREPFAAISISG 148 (182)
T ss_dssp EEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEEe
Confidence 3456799999999999887765
No 154
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=23.91 E-value=62 Score=20.38 Aligned_cols=17 Identities=6% Similarity=0.010 Sum_probs=13.8
Q ss_pred EEEEeeCCCCCEEEEEE
Q psy8547 20 DIVPIKNEKREVVLYLA 36 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~ 36 (115)
...||-|++|+++|.+.
T Consensus 119 ~~l~Vvd~~g~~~Giit 135 (148)
T 3lv9_A 119 QLAIVVDEYGGTSGVVT 135 (148)
T ss_dssp SEEEEECTTSSEEEEEE
T ss_pred eEEEEEeCCCCEEEEEE
Confidence 45799999999998664
No 155
>1ysp_A Transcriptional regulator KDGR; ICLR, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Escherichia coli}
Probab=23.74 E-value=65 Score=21.55 Aligned_cols=22 Identities=18% Similarity=0.002 Sum_probs=17.6
Q ss_pred EEEEEEeeCCCCCEEEEEEEEE
Q psy8547 18 LLDIVPIKNEKREVVLYLASHK 39 (115)
Q Consensus 18 ~~~i~Pi~de~G~~~~fi~~~~ 39 (115)
.-...||+|.+|.+++-|++.-
T Consensus 123 ~~vAaPv~~~~g~~~~alsv~~ 144 (181)
T 1ysp_A 123 RCIAVPVFDRFGVVIAGLSISF 144 (181)
T ss_dssp EEEEEEEECTTSCEEEEEEECC
T ss_pred EEEEEEEECCCCCEEEEEEEEe
Confidence 3446799999999999887764
No 156
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.74 E-value=3e+02 Score=22.52 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=44.4
Q ss_pred cceeecc-CCCceeEEEEEEEeeCCCCCEEEEEEEEEeccchhhhhhhcCCC-CceeceecCCceeEEEEEeEEeeCCCC
Q psy8547 4 HPDTNYR-QRTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMADNGE-GDYEDMQELGTPFWCLLDIVPIKNEKR 81 (115)
Q Consensus 4 ~~~~~Yr-dG~~fw~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~~e~~~~~~-e~~~~yrKdGs~f~~~~~i~pirde~G 81 (115)
.-..||| |...=||.+...-- ++|.+.|.+..+. .+++.. +...|+ ..+..++-+|.+-.+.+-.-..|+..|
T Consensus 151 ~QIInY~~d~~~kW~~l~GI~~--~~~~v~G~mQLYS--~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 151 CQIINYRTDAKQKWLLLTGISA--QQNRVVGAMQLYS--VDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp CEEEEEEECTTSSEEEEEEEEE--ETTEEEEEEEEEE--STTCCE-EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred ceEEEEEECCCCCeEEEEeecc--cCCcccceEEEee--cccccc-chheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 3468999 99999998877633 4578887655554 333333 333443 223345566665555555555665555
Q ss_pred C
Q psy8547 82 E 82 (115)
Q Consensus 82 ~ 82 (115)
.
T Consensus 226 ~ 226 (494)
T 1bpo_A 226 G 226 (494)
T ss_dssp C
T ss_pred c
Confidence 4
No 157
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=23.59 E-value=1.2e+02 Score=20.66 Aligned_cols=30 Identities=3% Similarity=0.101 Sum_probs=23.4
Q ss_pred EEEEEeEEeeCCCCCEEEEEEEeeecccch
Q psy8547 68 WCLLDIVPIKNEKREVVLYLASHKDVTNTK 97 (115)
Q Consensus 68 ~~~~~i~pirde~G~v~~~i~~~~DIT~~k 97 (115)
|+.....||++.+|++.++++.-.++....
T Consensus 126 ~~i~~~~pi~~~~g~~~Gvl~~~i~l~~l~ 155 (254)
T 3lif_A 126 WVFVVSRRLETTDGKFFGVVVATIESEYFS 155 (254)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEECHHHHH
T ss_pred EEEEEEeeeeCCCCCEeEEEEEEECHHHHH
Confidence 455667899999999999988887775443
No 158
>3e90_B NS3 protease; trypsin-like serine protease, protease inhibitor, catalytic histidine, induced FIT, ATP-binding, capsid protein, helicase; HET: NKK; 2.45A {West nile virus} SCOP: b.47.1.3
Probab=23.55 E-value=42 Score=24.28 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=14.8
Q ss_pred EEEEeeCCCCCEEEEEEE
Q psy8547 20 DIVPIKNEKREVVLYLAS 37 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~~ 37 (115)
+-|||.|.+|+++++-+.
T Consensus 139 SGSPIin~~G~VVGLYGN 156 (198)
T 3e90_B 139 SGSPIVDKNGDVIGLYGN 156 (198)
T ss_dssp TTCEEECTTCCEEEECCC
T ss_pred CCCceecCCCcEEEEecc
Confidence 358999999999987644
No 159
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=23.30 E-value=73 Score=19.43 Aligned_cols=17 Identities=12% Similarity=0.300 Sum_probs=13.6
Q ss_pred EEEEeeCCCCCEEEEEE
Q psy8547 20 DIVPIKNEKREVVLYLA 36 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~ 36 (115)
...||-|++|+++|++.
T Consensus 99 ~~l~Vvd~~g~~~Giit 115 (133)
T 2ef7_A 99 RHLPVVDDKGNLKGIIS 115 (133)
T ss_dssp SEEEEECTTSCEEEEEE
T ss_pred CEEEEECCCCeEEEEEE
Confidence 34699999999988764
No 160
>3u1j_B Serine protease NS3; serine protease, ER MEM hydrolase-hydrolase inhibitor complex; 1.80A {Dengue virus 3} SCOP: b.47.1.3 PDB: 3u1i_B
Probab=23.29 E-value=42 Score=24.17 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=14.8
Q ss_pred EEEEeeCCCCCEEEEEEE
Q psy8547 20 DIVPIKNEKREVVLYLAS 37 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~~ 37 (115)
+-|||.|.+|+++++-+.
T Consensus 144 SGSPIin~~G~VVGLYGN 161 (191)
T 3u1j_B 144 SGSPIINREGKVVGLYGN 161 (191)
T ss_dssp TTCEEECTTSCEEEECCB
T ss_pred CCCceecCCCcEEEEecC
Confidence 358999999999987644
No 161
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=23.27 E-value=53 Score=20.40 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=13.7
Q ss_pred EEEEeeCCCCCEEEEEE
Q psy8547 20 DIVPIKNEKREVVLYLA 36 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~ 36 (115)
...||.|++|+++|++.
T Consensus 117 ~~l~Vvd~~g~~~Giit 133 (152)
T 4gqw_A 117 RRLPVVDSDGKLVGIIT 133 (152)
T ss_dssp CEEEEECTTSBEEEEEE
T ss_pred CEEEEECCCCcEEEEEE
Confidence 46799999999998753
No 162
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=23.20 E-value=63 Score=20.25 Aligned_cols=22 Identities=5% Similarity=0.131 Sum_probs=16.4
Q ss_pred EEEEeeCCCCCEEEEEEEEEecc
Q psy8547 20 DIVPIKNEKREVVLYLASHKDVT 42 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~~~~DIT 42 (115)
...||.|++|+++|++. .+|+.
T Consensus 49 ~~~pVvd~~~~~~Givt-~~dl~ 70 (150)
T 3lqn_A 49 SAIPVLDPMYKLHGLIS-TAMIL 70 (150)
T ss_dssp SEEEEECTTCBEEEEEE-HHHHH
T ss_pred cEEEEECCCCCEEEEEE-HHHHH
Confidence 45799999999998773 34553
No 163
>4agk_A Capsid protein, coat protein, C; hydrolase, viral protein; 1.81A {Aura virus} PDB: 4agj_A 1kxa_A 2snw_A 1svp_A 1kxb_A 1kxc_A 1kxd_A 1kxe_A 2snv_A 1z8y_Q 1wyk_A
Probab=22.45 E-value=69 Score=22.02 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=17.7
Q ss_pred EEEEeeCCCCCEEEEEEEEEe
Q psy8547 20 DIVPIKNEKREVVLYLASHKD 40 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~~~~D 40 (115)
.+-||++++|++.+|.....+
T Consensus 8 ~~F~V~~d~Gkv~GyA~~vg~ 28 (158)
T 4agk_A 8 RTFAVKNEDGKIMGYAVAMEG 28 (158)
T ss_dssp CEEEEECTTCCEEEEEEEETT
T ss_pred ceeeEEecCCceeeEEEEEcC
Confidence 467999999999999987654
No 164
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=22.18 E-value=1.3e+02 Score=20.24 Aligned_cols=24 Identities=13% Similarity=-0.031 Sum_probs=20.2
Q ss_pred EEEEEEEeeCCCCCEEEEEEEEEe
Q psy8547 17 CLLDIVPIKNEKREVVLYLASHKD 40 (115)
Q Consensus 17 ~~~~i~Pi~de~G~~~~fi~~~~D 40 (115)
.++-+.||+..+|+++|.+.+...
T Consensus 130 ~S~l~vPi~~~~g~viGVL~l~s~ 153 (180)
T 1f5m_A 130 KSEIVVPIISNDGKTLGVIDIDCL 153 (180)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEES
T ss_pred ceEEEEEEEcCCCeEEEEEEeccC
Confidence 466788999888999999998764
No 165
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=22.08 E-value=64 Score=25.08 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=16.5
Q ss_pred EEEEEeeCCCCCEEEEEEE
Q psy8547 19 LDIVPIKNEKREVVLYLAS 37 (115)
Q Consensus 19 ~~i~Pi~de~G~~~~fi~~ 37 (115)
--+-||+|.+|++++|-+-
T Consensus 188 ri~fPi~d~~G~vigf~gR 206 (407)
T 2au3_A 188 RVVIPIKDPRGRVIGFGGR 206 (407)
T ss_dssp EEEEEEECTTSCEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEEE
Confidence 4678999999999999875
No 166
>3tlq_A Regulatory protein YDIV; anti-FLHD4C2 factor, repress motility, transcription; 1.91A {Escherichia coli}
Probab=22.07 E-value=1.7e+02 Score=20.52 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=22.3
Q ss_pred ceeEEEEEEEeeCCCCCEEEEEEEEE
Q psy8547 14 PFWCLLDIVPIKNEKREVVLYLASHK 39 (115)
Q Consensus 14 ~fw~~~~i~Pi~de~G~~~~fi~~~~ 39 (115)
.|..++...||.|-+|++++|=+..+
T Consensus 13 ~~~~el~fQPi~~~~g~i~g~EaL~R 38 (242)
T 3tlq_A 13 LYHSDCYFLPIRDNQQVLVGVELITH 38 (242)
T ss_dssp TEEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred CccccEEEeeEEcCCCCEEEEEEEEe
Confidence 45677889999999999999988777
No 167
>1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant, coat protein, viral protein; 2.00A {Sindbis virus} SCOP: b.47.1.3 PDB: 1kxb_A 1kxa_A 2snw_A 1kxc_A 1kxd_A 1kxe_A 2snv_A 1z8y_Q 1wyk_A
Probab=21.93 E-value=78 Score=21.81 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.9
Q ss_pred EEEeeCCCCCEEEEEEEEEe
Q psy8547 21 IVPIKNEKREVVLYLASHKD 40 (115)
Q Consensus 21 i~Pi~de~G~~~~fi~~~~D 40 (115)
+-||+|.+|++.+|.....+
T Consensus 10 ~F~v~n~~G~v~GyA~~vg~ 29 (161)
T 1svp_A 10 LFDVKNEDGDVIGHALAMEG 29 (161)
T ss_dssp EEEEECTTSCEEEEEEEETT
T ss_pred eeeeeccCCceEEEEEEEcC
Confidence 56999999999999987653
No 168
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=21.23 E-value=66 Score=20.46 Aligned_cols=16 Identities=6% Similarity=-0.020 Sum_probs=13.3
Q ss_pred EEEEeeCCCCCEEEEE
Q psy8547 20 DIVPIKNEKREVVLYL 35 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi 35 (115)
...||-|++|+++|.+
T Consensus 117 ~~lpVvd~~g~~vGiv 132 (153)
T 3oco_A 117 PMAIVIDEYGGTSGII 132 (153)
T ss_dssp SCEEEECTTSCEEEEE
T ss_pred cEEEEEeCCCCEEEEe
Confidence 4579999999999865
No 169
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=21.02 E-value=72 Score=19.53 Aligned_cols=21 Identities=14% Similarity=0.447 Sum_probs=15.4
Q ss_pred EEEEeeCCCCCEEEEEEEEEec
Q psy8547 20 DIVPIKNEKREVVLYLASHKDV 41 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~~~~DI 41 (115)
...||.|++|+++|++. ..|+
T Consensus 40 ~~~~Vvd~~~~~~Givt-~~dl 60 (138)
T 2p9m_A 40 SSLPVIDDENKVIGIVT-TTDI 60 (138)
T ss_dssp CEEEEECTTCBEEEEEE-HHHH
T ss_pred cEEEEECCCCeEEEEEE-HHHH
Confidence 45799999999988764 3344
No 170
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=20.72 E-value=88 Score=19.17 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=15.6
Q ss_pred EEEEeeCCCCCEEEEEEEEEec
Q psy8547 20 DIVPIKNEKREVVLYLASHKDV 41 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~~~~DI 41 (115)
...||.|++|+++|++.. .|+
T Consensus 39 ~~~~Vvd~~~~~~Givt~-~dl 59 (138)
T 2yzi_A 39 GSLVVINDDGNVVGFFTK-SDI 59 (138)
T ss_dssp SEEEEECTTSCEEEEEEH-HHH
T ss_pred CEEEEEcCCCcEEEEEeH-HHH
Confidence 457999999999987643 345
No 171
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=20.70 E-value=75 Score=20.43 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=17.4
Q ss_pred EEEEeeCCCCCEEEEEEEEEeccchh
Q psy8547 20 DIVPIKNEKREVVLYLASHKDVTNTK 45 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~~~~DIT~~k 45 (115)
...||-|++|+++|++. ..||-...
T Consensus 130 ~~lpVvd~~g~~vGiit-~~dil~~~ 154 (180)
T 3sl7_A 130 RRLPVVDADGKLIGILT-RGNVVRAA 154 (180)
T ss_dssp CEEEEECTTCBEEEEEE-HHHHHHHH
T ss_pred CEEEEECCCCeEEEEEE-HHHHHHHH
Confidence 45799999999998653 34555443
No 172
>3obf_A Putative transcriptional regulator, ICLR family; structural genomics, PSI-2, protein structure initiative; 2.16A {Arthrobacter aurescens}
Probab=20.60 E-value=1.5e+02 Score=19.48 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=17.8
Q ss_pred EEEEEEeeCCCCCEEEEEEEEE
Q psy8547 18 LLDIVPIKNEKREVVLYLASHK 39 (115)
Q Consensus 18 ~~~i~Pi~de~G~~~~fi~~~~ 39 (115)
.-...||+|.+|++++-+++.-
T Consensus 122 ~~iAaPI~~~~g~~~aalsv~~ 143 (176)
T 3obf_A 122 VGVASPVYDHRGNMVASVLIPA 143 (176)
T ss_dssp EEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEeEe
Confidence 3456899999999998887765
No 173
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=20.50 E-value=84 Score=19.86 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=13.9
Q ss_pred EEEEeeCCCCCEEEEEE
Q psy8547 20 DIVPIKNEKREVVLYLA 36 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~ 36 (115)
...||.|++|+++|++.
T Consensus 53 ~~~pVvd~~~~~vGivt 69 (152)
T 2uv4_A 53 SALPVVDEKGRVVDIYS 69 (152)
T ss_dssp SEEEEECTTSBEEEEEE
T ss_pred ceEeEECCCCcEEEEEe
Confidence 45799999999998764
No 174
>3lkw_A Fusion protein of nonstructural protein 2B and nonstructural protein 3; viral protease, serine protease, NS3 protease, NS2B cofactor; 2.00A {Dengue virus 1} PDB: 3l6p_A
Probab=20.43 E-value=51 Score=24.48 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=14.7
Q ss_pred EEEEeeCCCCCEEEEEEE
Q psy8547 20 DIVPIKNEKREVVLYLAS 37 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~~ 37 (115)
+-|||.|.+|+++++-+.
T Consensus 185 SGSPIin~~G~VvGLYGn 202 (236)
T 3lkw_A 185 AGSPIVNREGKIVGLYGN 202 (236)
T ss_dssp TTCEEECTTSCEEEESCC
T ss_pred CCCceecCCCcEEEEecc
Confidence 358999999999987644
No 175
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=20.36 E-value=1.1e+02 Score=22.64 Aligned_cols=30 Identities=3% Similarity=-0.099 Sum_probs=24.2
Q ss_pred eEEEEEEEeeCCCCCEEEEEEEEEeccchhh
Q psy8547 16 WCLLDIVPIKNEKREVVLYLASHKDVTNTKM 46 (115)
Q Consensus 16 w~~~~i~Pi~de~G~~~~fi~~~~DIT~~k~ 46 (115)
++.....||++ +|+++|++++.-|+..-..
T Consensus 169 ~~i~~a~PV~~-~G~viGVv~v~i~l~~l~~ 198 (305)
T 3e4o_A 169 PGLYISRRVDG-PGGPLGVIVAKLEFDGVEA 198 (305)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEEECCHHHHH
T ss_pred EEEEEEEEEcc-CCeEEEEEEEEEcHHHHHH
Confidence 56678899998 4999999999988885443
No 176
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=20.21 E-value=90 Score=19.11 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=15.9
Q ss_pred EEEEeeCCCCCEEEEEEEEEecc
Q psy8547 20 DIVPIKNEKREVVLYLASHKDVT 42 (115)
Q Consensus 20 ~i~Pi~de~G~~~~fi~~~~DIT 42 (115)
...||.|++|+++|++.. .|+.
T Consensus 43 ~~~~Vvd~~~~~~Givt~-~dl~ 64 (144)
T 2nyc_A 43 SSVPIIDENGYLINVYEA-YDVL 64 (144)
T ss_dssp SEEEEECTTCBEEEEEEH-HHHH
T ss_pred ceeeEEcCCCcEEEEEcH-HHHH
Confidence 457999999999987753 3443
Done!