RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8547
         (115 letters)



>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1
           domain {Green algae (Chlamydomonas reinhardtii) [TaxId:
           3055]}
          Length = 109

 Score = 32.1 bits (72), Expect = 0.005
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 9   YRQRTPFWCLLDIVPIKNEKREVVLYLASHKDVTN 43
            +  TPFW LL + PIK     V  ++    DVT+
Sbjct: 75  RKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109



 Score = 31.4 bits (70), Expect = 0.008
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 55  GDYEDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTN 95
               + ++ GTPFW LL + PIK     V  ++    DVT+
Sbjct: 69  VRLLNYRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109


>d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain
          b3728 [TaxId: 1663]}
          Length = 393

 Score = 26.1 bits (57), Expect = 1.0
 Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 2/37 (5%)

Query: 58 EDMQELGTPFWCL--LDIVPIKNEKREVVLYLASHKD 92
            + ELG         D++P    + E    L     
Sbjct: 39 HKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQ 75


>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain,
           lov2 {Maidenhair fern (Adiantum capillus-veneris)
           [TaxId: 13818]}
          Length = 104

 Score = 25.3 bits (54), Expect = 1.2
 Identities = 5/32 (15%), Positives = 16/32 (50%)

Query: 10  RQRTPFWCLLDIVPIKNEKREVVLYLASHKDV 41
           +    FW L  +  +++E  +V  ++   +++
Sbjct: 73  KGGRAFWNLFHLQVMRDENGDVQYFIGVQQEM 104



 Score = 24.9 bits (53), Expect = 1.8
 Identities = 6/40 (15%), Positives = 18/40 (45%)

Query: 54  EGDYEDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDV 93
                +  + G  FW L  +  +++E  +V  ++   +++
Sbjct: 65  TVQVLNYTKGGRAFWNLFHLQVMRDENGDVQYFIGVQQEM 104


>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes
          missouriensis [TaxId: 1866]}
          Length = 392

 Score = 25.7 bits (56), Expect = 1.7
 Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 5/46 (10%)

Query: 58 EDMQELGTPFWCL--LDIVPIKN---EKREVVLYLASHKDVTNTKM 98
            + E+G         D+VP  +    +  ++       D T   +
Sbjct: 39 HKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGFKKALDETGLIV 84


>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 110

 Score = 24.3 bits (51), Expect = 3.6
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 1   MVTHPDTNYRQRTPFWCLLDIVPIKNEKREVVLYLASHKDVT 42
                    +  + F CL+D+VP+KNE   V++++ + + V 
Sbjct: 67  RKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVM 108


>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 301

 Score = 23.5 bits (50), Expect = 8.1
 Identities = 5/23 (21%), Positives = 8/23 (34%)

Query: 29  REVVLYLASHKDVTNTKMAQMAD 51
              + Y  SH  V   +   +A 
Sbjct: 270 ERFIQYAQSHDKVWFARREDIAR 292



 Score = 23.5 bits (50), Expect = 8.1
 Identities = 5/23 (21%), Positives = 8/23 (34%)

Query: 81  REVVLYLASHKDVTNTKMAQMAD 103
              + Y  SH  V   +   +A 
Sbjct: 270 ERFIQYAQSHDKVWFARREDIAR 292


>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL
           {Escherichia coli [TaxId: 562]}
          Length = 182

 Score = 23.3 bits (50), Expect = 8.9
 Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 54  EGDYEDMQELGTPFWCLLDIVPIKNEKREVVLYLASHKDVTNTKMAQMA 102
           + D + +     P    L    ++    E++ YLA         +AQ  
Sbjct: 83  QSDAQHVTIRAVPLP--LRQQNLQILIPELIGYLAKQSVFEPGNIAQWI 129


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 423,578
Number of extensions: 16514
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 15
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)