BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8548
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L4R|A Chain A, Nmr Solution Structure Of The N-Terminal Pas Domain Of
Herg
Length = 135
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 5 FVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALE 64
F++ NA+V + ++YC+DGFCEL G++RA++MQ+ C C FL+GP T QI +AL
Sbjct: 29 FIIANARVENC-AVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALL 87
Query: 65 SKTELKLEVIFYKKNG 80
E K+E+ FY+K+G
Sbjct: 88 GAEERKVEIAFYRKDG 103
>pdb|2L0W|A Chain A, Solution Nmr Structure Of The N-Terminal Pas Domain Of
Herg Potassium Channel
Length = 138
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 5 FVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALE 64
F++ NA+V + ++YC+DGFCEL G++RA++MQ+ C C FL+GP T QI +AL
Sbjct: 32 FIIANARVENC-AVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALL 90
Query: 65 SKTELKLEVIFYKKNG 80
E K+E+ FY+K+G
Sbjct: 91 GAEERKVEIAFYRKDG 106
>pdb|2L1M|A Chain A, Solution Structure Of The Eag Domain Of The Herg (Kv11.1)
K+ Channel
Length = 150
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 5 FVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALE 64
F++ NA+V + ++YC+DGFCEL G++RA++MQ+ C C FL+GP T QI +AL
Sbjct: 29 FIIANARVENC-AVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALL 87
Query: 65 SKTELKLEVIFYKKNG 80
E K+E+ FY+K+G
Sbjct: 88 GAEERKVEIAFYRKDG 103
>pdb|1BYW|A Chain A, Structure Of The N-Terminal Domain Of The Human-Erg
Potassium Channel
Length = 110
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 5 FVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALE 64
F++ NA+V + ++YC+DGFCEL G++RA++MQ+ C C FL+GP T QI +AL
Sbjct: 4 FIIANARVENC-AVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALL 62
Query: 65 SKTELKLEVIFYKKNG 80
E K+E+ FY+K+G
Sbjct: 63 GAEERKVEIAFYRKDG 78
>pdb|2V1A|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Dark Structure Of Lov2 (404-546))
pdb|2V1B|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Light Structure Of Lov2 (404-546))
Length = 144
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 1 MNSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIE 60
+ NFV+ + ++P PI++ SD F +L+ ++R +I+ G C+FL GP+T +I
Sbjct: 9 IEKNFVITDPRLPD-NPIIFASDSFLQLTEYSREEIL--GRNCRFLQGPETDRATVRKIR 65
Query: 61 KALESKTELKLEVIFYKKNG 80
A++++TE+ +++I Y K+G
Sbjct: 66 DAIDNQTEVTVQLINYTKSG 85
>pdb|2V0U|A Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-induced Signal Transduction (cryo
Dark Structure Of Lov2 (404-546))
pdb|2V0W|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Cryo-
Trapped Light Structure Of Lov2 (404-546))
Length = 146
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 1 MNSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIE 60
+ NFV+ + ++P PI++ SD F +L+ ++R +I+ G C+FL GP+T +I
Sbjct: 11 IEKNFVITDPRLPD-NPIIFASDSFLQLTEYSREEIL--GRNCRFLQGPETDRATVRKIR 67
Query: 61 KALESKTELKLEVIFYKKNG 80
A++++TE+ +++I Y K+G
Sbjct: 68 DAIDNQTEVTVQLINYTKSG 87
>pdb|4EEU|A Chain A, Crystal Structure Of Philov2.1
Length = 118
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 1 MNSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIE 60
+ +FV+ + ++P YPI++ SDGF EL+ ++R +IM G +FL GP+T + +I
Sbjct: 9 IEKSFVITDPRLPD-YPIIFASDGFLELTEYSREEIM--GRNARFLQGPETDQATVQKIR 65
Query: 61 KALESKTELKLEVIFYKKNG 80
A+ + E +++I Y K+G
Sbjct: 66 DAIRDQRETTVQLINYTKSG 85
>pdb|4EEP|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2
Length = 115
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 1 MNSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIE 60
+ NFV+ + ++P PI++ SD F EL+ ++R +I+ G C+FL GP+T + +I
Sbjct: 6 IEKNFVISDPRLPD-NPIIFASDSFLELTEYSREEIL--GRNCRFLQGPETDQATVQKIR 62
Query: 61 KALESKTELKLEVIFYKKNG 80
A+ + E+ +++I Y K+G
Sbjct: 63 DAIRDQREITVQLINYTKSG 82
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 58.9 bits (141), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 1 MNSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIE 60
+ NFV+ + ++P PI++ SD F +L+ ++R +I+ G C+FL GP+T +I
Sbjct: 20 IEKNFVITDPRLPD-NPIIFASDSFLQLTEYSREEIL--GRNCRFLQGPETDRATVRKIR 76
Query: 61 KALESKTELKLEVIFYKKNG 80
A++++TE+ +++I Y K+G
Sbjct: 77 DAIDNQTEVTVQLINYTKSG 96
>pdb|4EES|A Chain A, Crystal Structure Of Ilov
pdb|4EET|B Chain B, Crystal Structure Of Ilov
pdb|4EET|D Chain D, Crystal Structure Of Ilov
Length = 115
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 1 MNSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIE 60
+ NFV+ + ++P PI++ SDGF EL+ ++R +I+ G +FL GP+T + +I
Sbjct: 6 IEKNFVITDPRLPD-NPIIFASDGFLELTEYSREEIL--GRNARFLQGPETDQATVQKIR 62
Query: 61 KALESKTELKLEVIFYKKNG 80
A+ + E +++I Y K+G
Sbjct: 63 DAIRDQRETTVQLINYTKSG 82
>pdb|4EER|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2 C426a Mutant
Length = 115
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 1 MNSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIE 60
+ NFV+ + ++P PI++ SD F EL+ ++R +I+ G +FL GP+T + +I
Sbjct: 6 IEKNFVISDPRLPD-NPIIFASDSFLELTEYSREEIL--GRNARFLQGPETDQATVQKIR 62
Query: 61 KALESKTELKLEVIFYKKNG 80
A+ + E+ +++I Y K+G
Sbjct: 63 DAIRDQREITVQLINYTKSG 82
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 1 MNSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIE 60
+ NFV+ + ++P PI++ SD F +L+ ++R +I+ G +FL GP+T +I
Sbjct: 20 IEKNFVITDPRLPD-NPIIFASDSFLQLTEYSREEIL--GRNARFLQGPETDRATVRKIR 76
Query: 61 KALESKTELKLEVIFYKKNG 80
A++++TE+ +++I Y K+G
Sbjct: 77 DAIDNQTEVTVQLINYTKSG 96
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 1 MNSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIE 60
+ NFV+ + ++P PI++ SD F +L+ ++R +I+ G +FL GP+T +I
Sbjct: 20 IEKNFVITDPRLPD-NPIIFASDSFLQLTEYSREEIL--GRNMRFLQGPETDRATVRKIR 76
Query: 61 KALESKTELKLEVIFYKKNG 80
A++++TE+ +++I Y K+G
Sbjct: 77 DAIDNQTEVTVQLINYTKSG 96
>pdb|3ULF|A Chain A, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|B Chain B, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|C Chain C, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|D Chain D, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|E Chain E, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|F Chain F, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 170
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 4 NFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKAL 63
NFV+ +A +P PIVY S GF L+G++ QI+ G C+FL GP+T +I A+
Sbjct: 51 NFVITDASLPD-NPIVYASRGFLTLTGYSLDQIL--GRNCRFLQGPETDPRAVDKIRNAI 107
Query: 64 ESKTELKLEVIFYKKNG 80
+ + ++ Y+++G
Sbjct: 108 TKGVDTSVCLLNYRQDG 124
>pdb|3UE6|A Chain A, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|B Chain B, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|C Chain C, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|D Chain D, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|E Chain E, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|F Chain F, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 166
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 4 NFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKAL 63
NFV+ +A +P PIVY S GF L+G++ QI+ G C+FL GP+T +I A+
Sbjct: 47 NFVITDASLPD-NPIVYASRGFLTLTGYSLDQIL--GRNCRFLQGPETDPRAVDKIRNAI 103
Query: 64 ESKTELKLEVIFYKKNG 80
+ + ++ Y+++G
Sbjct: 104 TKGVDTSVCLLNYRQDG 120
>pdb|3RH8|B Chain B, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
pdb|3RH8|D Chain D, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
Length = 148
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 17 PIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKT-----------QIEKALES 65
PIVY S+ F ++G++ A+++ G C+FL PD + K+ I KA++
Sbjct: 48 PIVYASEAFLYMTGYSNAEVL--GRNCRFLQSPDGMVKPKSTRKYVDSNTINTIRKAIDR 105
Query: 66 KTELKLEVIFYKKNG 80
E+++EV+ +KKNG
Sbjct: 106 NAEVQVEVVNFKKNG 120
>pdb|1G28|A Chain A, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|B Chain B, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|C Chain C, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|D Chain D, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1JNU|A Chain A, Photoexcited Structure Of The Plant Photoreceptor
Domain, Phy3 Lov2
pdb|1JNU|B Chain B, Photoexcited Structure Of The Plant Photoreceptor
Domain, Phy3 Lov2
pdb|1JNU|C Chain C, Photoexcited Structure Of The Plant Photoreceptor
Domain, Phy3 Lov2
pdb|1JNU|D Chain D, Photoexcited Structure Of The Plant Photoreceptor
Domain, Phy3 Lov2
Length = 104
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 4 NFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKAL 63
+FV+ + ++P PI++ SD F EL+ + R +++ G C+FL G T + I A+
Sbjct: 2 SFVITDPRLPD-NPIIFASDRFLELTEYTREEVL--GNNCRFLQGRGTDRKAVQLIRDAV 58
Query: 64 ESKTELKLEVIFYKKNG 80
+ + ++ ++V+ Y K G
Sbjct: 59 KEQRDVTVQVLNYTKGG 75
>pdb|2Z6D|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
pdb|2Z6D|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
Length = 130
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 1 MNSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIE 60
+ FV+ +A P PIVY S GF ++G++ +I+ G C+FL GPDT + +I
Sbjct: 15 LQQTFVVSDATQPHC-PIVYASSGFFTMTGYSSKEIV--GRNCRFLQGPDTDKNEVAKIR 71
Query: 61 KALESKTELKLEVIFYKKNG 80
+++ ++ YKK+G
Sbjct: 72 DCVKNGKSYCGRLLNYKKDG 91
>pdb|2PD8|A Chain A, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
pdb|2PD8|B Chain B, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
Length = 149
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 17 PIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKT-----------QIEKALES 65
PIVY S+ F ++G++ A+++ G C+FL PD + K+ + KA++
Sbjct: 49 PIVYASEAFLYMTGYSNAEVL--GRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDR 106
Query: 66 KTELKLEVIFYKKNG 80
E+++EV+ +KKNG
Sbjct: 107 NAEVQVEVVNFKKNG 121
>pdb|3D72|A Chain A, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In
The Fungal Photoreceptor Vvd
pdb|3D72|B Chain B, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In
The Fungal Photoreceptor Vvd
Length = 149
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 17 PIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKT-----------QIEKALES 65
PIVY S+ F ++G++ A+++ G C+FL PD + K+ + KA++
Sbjct: 49 PIVYASEAFLYMTGYSNAEVL--GRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDR 106
Query: 66 KTELKLEVIFYKKNG 80
E+++EV+ +KKNG
Sbjct: 107 NAEVQVEVVNFKKNG 121
>pdb|3T50|A Chain A, X-Ray Structure Of The Lov Domain From The Lov-Hk
Sensory Protein From Brucella Abortus (Dark State).
pdb|3T50|B Chain B, X-Ray Structure Of The Lov Domain From The Lov-Hk
Sensory Protein From Brucella Abortus (Dark State)
Length = 128
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 5 FVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALE 64
++ N +P PIV+ + F +L+G+ ++M G C+FL G T H I+ A+
Sbjct: 10 MLITNPHLPD-NPIVFANPAFLKLTGYEADEVM--GRNCRFLQGHGTDPAHVRAIKSAIA 66
Query: 65 SKTELKLEVIFYKKNG 80
++ + +++I YKK+G
Sbjct: 67 AEKPIDIDIINYKKSG 82
>pdb|3IS2|A Chain A, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 17 PIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKT-----------QIEKALES 65
PIVY S+ F ++G++ A+++ G C+FL PD + K+ + KA++
Sbjct: 52 PIVYASEAFLYMTGYSNAEVL--GRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDR 109
Query: 66 KTELKLEVIFYKKNG 80
E+++EV+ +KKNG
Sbjct: 110 NAEVQVEVVNFKKNG 124
>pdb|2PD7|A Chain A, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PD7|B Chain B, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PDR|A Chain A, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|B Chain B, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|C Chain C, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|D Chain D, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDT|A Chain A, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|B Chain B, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|C Chain C, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|D Chain D, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
Length = 149
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 17 PIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKT-----------QIEKALES 65
PIVY S+ F ++G++ A+++ G C+FL PD + K+ + KA++
Sbjct: 49 PIVYASEAFLYMTGYSNAEVL--GRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDR 106
Query: 66 KTELKLEVIFYKKNG 80
E+++EV+ +KKNG
Sbjct: 107 NAEVQVEVVNFKKNG 121
>pdb|3HJK|A Chain A, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd).
pdb|3HJK|B Chain B, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd)
Length = 154
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 17 PIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKT-----------QIEKALES 65
PIVY S+ F ++G++ A+++ G C+FL PD + K+ + KA++
Sbjct: 52 PIVYASEAFLYMTGYSNAEVL--GRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDR 109
Query: 66 KTELKLEVIFYKKNG 80
E+++EV+ +KKNG
Sbjct: 110 NAEVQVEVVNFKKNG 124
>pdb|3IS2|B Chain B, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 17 PIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKT-----------QIEKALES 65
PIVY S+ F ++G++ A+++ G C+FL PD + K+ + KA++
Sbjct: 52 PIVYASEAFLYMTGYSNAEVL--GRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDR 109
Query: 66 KTELKLEVIFYKKNG 80
E+++EV+ +KKNG
Sbjct: 110 NAEVQVEVVNFKKNG 124
>pdb|2PR5|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR5|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR6|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
pdb|2PR6|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
Length = 132
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 17 PIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIFY 76
PIVY + GF +++G+ +I+ G C+FL G T I AL++K + +++ Y
Sbjct: 23 PIVYVNQGFVQMTGYETEEIL--GKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNY 80
Query: 77 KKNG 80
KK+G
Sbjct: 81 KKDG 84
>pdb|3HJI|A Chain A, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of
Vivid (Vvd).
pdb|3HJI|B Chain B, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of
Vivid (Vvd)
Length = 154
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 17 PIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKT-----------QIEKALES 65
P+VY S+ F ++G++ A+++ G C+FL PD + K+ + KA++
Sbjct: 52 PVVYASEAFLYMTGYSNAEVL--GRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDR 109
Query: 66 KTELKLEVIFYKKNG 80
E+++EV+ +KKNG
Sbjct: 110 NAEVQVEVVNFKKNG 124
>pdb|2Z6C|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
pdb|2Z6C|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
Length = 129
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 4 NFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKAL 63
FV+ +A P YPI+Y S GF ++G+ +++ G C+FL G T + +I + L
Sbjct: 19 TFVVSDATKPD-YPIMYASAGFFNMTGYTSKEVV--GRNCRFLQGSGTDADELAKIRETL 75
Query: 64 ESKTELKLEVIFYKKNG 80
+ ++ YKK+G
Sbjct: 76 AAGNNYCGRILNYKKDG 92
>pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From
Chlamydomonas Reinhardtii In The Dark State.
pdb|1N9N|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State. Data
Set Of A Single Crystal.
pdb|1N9O|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State.
Composite Data Set
Length = 109
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 1 MNSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIE 60
+ FV+ +A +P P+VY S+GF ++G+ +++ G C+FL G T + +I
Sbjct: 2 LRHTFVVADATLPDC-PLVYASEGFYAMTGYGPDEVL--GHNCRFLQGEGTDPKEVQKIR 58
Query: 61 KALESKTELKLEVIFYKKNG 80
A++ + ++ Y+K+G
Sbjct: 59 DAIKKGEACSVRLLNYRKDG 78
>pdb|4HIA|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HIA|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 176
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 17 PIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIFY 76
P+V + F ++G+ QI+ G C+FL D + + + I AL+ EL++ + Y
Sbjct: 31 PVVLANPPFLRMTGYTEGQIL--GFNCRFLQRGDENAQARADIRDALKLGRELQVVLRNY 88
Query: 77 KKN 79
+ N
Sbjct: 89 RAN 91
>pdb|4HJ3|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ3|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 176
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 17 PIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIFY 76
P+V + F ++G+ QI+ G C+FL D + + + I AL+ EL++ + Y
Sbjct: 31 PLVLANPPFLRMTGYTEGQIL--GFNCRFLQRGDENAQARADIRDALKLGRELQVVLRNY 88
Query: 77 KKN 79
+ N
Sbjct: 89 RAN 91
>pdb|4HJ6|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ6|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 178
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 17 PIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIFY 76
P+V + F ++G+ QI+ G C+FL D + + + I AL+ EL++ + Y
Sbjct: 33 PLVLANPPFLRMTGYTEGQIL--GFNCRFLQRGDENAQARADIRDALKLGRELQVVLRNY 90
Query: 77 KKN 79
+ N
Sbjct: 91 RAN 93
>pdb|4HJ4|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ4|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HNB|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HNB|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 177
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 17 PIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIFY 76
P+V + F ++G+ QI+ G C+FL D + + + I AL+ EL++ + Y
Sbjct: 32 PLVLANPPFLRMTGYTEGQIL--GFNCRFLQRGDENAQARADIRDALKLGRELQVVLRNY 89
Query: 77 KKN 79
+ N
Sbjct: 90 RAN 92
>pdb|3P7N|A Chain A, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
pdb|3P7N|B Chain B, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
Length = 258
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 17 PIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIFY 76
P++ + F +L+G++ + + G C+FL G T +I + + + +E++ Y
Sbjct: 87 PLIAINQAFTDLTGYSEEECV--GRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEILNY 144
Query: 77 KKNG 80
KK+G
Sbjct: 145 KKDG 148
>pdb|3SW1|A Chain A, Structure Of A Full-Length Bacterial Lov Protein
pdb|3SW1|B Chain B, Structure Of A Full-Length Bacterial Lov Protein
Length = 162
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 18 IVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIFYK 77
++Y + F L+G++R +I+ + C +FL G D + + +I KA+ + + Y+
Sbjct: 50 LIYVNAAFEYLTGYSRDEILYQDC--RFLQGDDRDQLGRARIRKAMAEGRPCREVLRNYR 107
Query: 78 KNG 80
K+G
Sbjct: 108 KDG 110
>pdb|2A4A|A Chain A, Deoxyribose-Phosphate Aldolase From P. Yoelii
pdb|2A4A|B Chain B, Deoxyribose-Phosphate Aldolase From P. Yoelii
Length = 281
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 40 GCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIFYKK 78
C F YG D+ E+ EKAL+ + VI YKK
Sbjct: 93 ACVINFPYGTDSMEKVLNDTEKALDDGADEIDLVINYKK 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,513,119
Number of Sequences: 62578
Number of extensions: 78612
Number of successful extensions: 193
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 38
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)