RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8548
(102 letters)
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform
CRA_B; HERG, PAS domain, voltage-gated potassium
channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Length = 138
Score = 113 bits (284), Expect = 5e-34
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 2 NSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEK 61
+ F++ NA+V + ++YC+DGFCEL G++RA++MQ+ C C FL+GP T QI +
Sbjct: 29 SRKFIIANARVEN-CAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQ 87
Query: 62 ALESKTELKLEVIFYKKNG 80
AL E K+E+ FY+K+G
Sbjct: 88 ALLGAEERKVEIAFYRKDG 106
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium
channel domain, membrane protein; 2.60A {Homo sapiens}
SCOP: d.110.3.6
Length = 110
Score = 111 bits (279), Expect = 1e-33
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 2 NSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEK 61
+ F++ NA+V + ++YC+DGFCEL G++RA++MQ+ C C FL+GP T QI +
Sbjct: 1 SRKFIIANARVEN-CAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQ 59
Query: 62 ALESKTELKLEVIFYKKNG 80
AL E K+E+ FY+K+G
Sbjct: 60 ALLGAEERKVEIAFYRKDG 78
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein,
flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB:
4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Length = 115
Score = 93.0 bits (232), Expect = 2e-26
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 2 NSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEK 61
NFV+ + ++P PI++ SDGF EL+ ++R +I+ G +FL GP+T + +I
Sbjct: 7 EKNFVITDPRLPD-NPIIFASDGFLELTEYSREEIL--GRNARFLQGPETDQATVQKIRD 63
Query: 62 ALESKTELKLEVIFYKKNG 80
A+ + E +++I Y K+G
Sbjct: 64 AIRDQRETTVQLINYTKSG 82
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin,
electron transport; HET: FMN; 1.90A {Chlamydomonas
reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Length = 109
Score = 92.2 bits (230), Expect = 4e-26
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 2 NSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEK 61
FV+ +A +P P+VY S+GF ++G+ +++ G C+FL G T + +I
Sbjct: 3 RHTFVVADATLPD-CPLVYASEGFYAMTGYGPDEVL--GHNCRFLQGEGTDPKEVQKIRD 59
Query: 62 ALESKTELKLEVIFYKKNG 80
A++ + ++ Y+K+G
Sbjct: 60 AIKKGEACSVRLLNYRKDG 78
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding,
serine/threonine-protein kinase, light-induced signal
trans phototropin1, nucleotide-binding; HET: FMN; 1.40A
{Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A*
1g28_A*
Length = 146
Score = 87.7 bits (218), Expect = 6e-24
Identities = 27/79 (34%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 2 NSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEK 61
NFV+ + ++P PI++ SD F +L+ ++R +I+ G C+FL GP+T +I
Sbjct: 12 EKNFVITDPRLPD-NPIIFASDSFLQLTEYSREEIL--GRNCRFLQGPETDRATVRKIRD 68
Query: 62 ALESKTELKLEVIFYKKNG 80
A++++TE+ +++I Y K+G
Sbjct: 69 AIDNQTEVTVQLINYTKSG 87
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing,
ATP-binding, chromophore, flavoprotein, FMN, kinase,
membrane, nucleotide-binding; HET: FMN; 2.00A
{Arabidopsis thaliana} PDB: 2z6c_A*
Length = 130
Score = 86.5 bits (215), Expect = 1e-23
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 1 MNSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIE 60
+ FV+ +A P PIVY S GF ++G++ +I+ G C+FL GPDT + +I
Sbjct: 15 LQQTFVVSDATQPH-CPIVYASSGFFTMTGYSSKEIV--GRNCRFLQGPDTDKNEVAKIR 71
Query: 61 KALESKTELKLEVIFYKKNG 80
+++ ++ YKK+G
Sbjct: 72 DCVKNGKSYCGRLLNYKKDG 91
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor,
signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB:
3ulf_A*
Length = 166
Score = 73.9 bits (182), Expect = 2e-18
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 2 NSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEK 61
NFV+ +A +P PIVY S GF L+G++ QI+ G C+FL GP+T +I
Sbjct: 45 QQNFVITDASLPD-NPIVYASRGFLTLTGYSLDQIL--GRNCRFLQGPETDPRAVDKIRN 101
Query: 62 ALESKTELKLEVIFYKKNG 80
A+ + + ++ Y+++G
Sbjct: 102 AITKGVDTSVCLLNYRQDG 120
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV,
signaling protein; HET: FAD; 1.65A {Neurospora crassa}
PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A*
3hji_A* 3rh8_B*
Length = 149
Score = 73.5 bits (181), Expect = 3e-18
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 1 MNSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPD---------- 50
+ +L + + PIVY S+ F ++G++ A+++ + C+FL PD
Sbjct: 34 TSVALILCDLKQKD-TPIVYASEAFLYMTGYSNAEVLGRN--CRFLQSPDGMVKPKSTRK 90
Query: 51 -TSEEHKTQIEKALESKTELKLEVIFYKKNG 80
+ KA++ E+++EV+ +KKNG
Sbjct: 91 YVDSNTINTMRKAIDRNAEVQVEVVNFKKNG 121
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription
factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter
litoralis}
Length = 258
Score = 73.5 bits (180), Expect = 2e-17
Identities = 16/79 (20%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 2 NSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEK 61
V+ + ++ P++ + F +L+G++ + + + C +FL G T +I +
Sbjct: 73 PIASVVSDPRLAD-NPLIAINQAFTDLTGYSEEECVGRNC--RFLAGSGTEPWLTDKIRQ 129
Query: 62 ALESKTELKLEVIFYKKNG 80
+ + +E++ YKK+G
Sbjct: 130 GVREHKPVLVEILNYKKDG 148
>3t50_A Blue-light-activated histidine kinase; PAS superfamily,
blue-light photoreceptor, FMN binding, TRAN; HET: FMN;
1.64A {Brucella melitensis}
Length = 128
Score = 62.9 bits (154), Expect = 2e-14
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 5 FVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALE 64
++ N +P PIV+ + F +L+G+ ++M G C+FL G T H I+ A+
Sbjct: 10 MLITNPHLPD-NPIVFANPAFLKLTGYEADEVM--GRNCRFLQGHGTDPAHVRAIKSAIA 66
Query: 65 SKTELKLEVIFYKKNG--YHEE 84
++ + +++I YKK+G +
Sbjct: 67 AEKPIDIDIINYKKSGEAFWNR 88
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV,
PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN;
1.45A {Bacillus subtilis} PDB: 2pr6_A*
Length = 132
Score = 62.9 bits (154), Expect = 2e-14
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 2 NSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEK 61
V+ + + PIVY + GF +++G+ +I+ G C+FL G T I
Sbjct: 9 RVGVVITDPALED-NPIVYVNQGFVQMTGYETEEIL--GKNCRFLQGKHTDPAEVDNIRT 65
Query: 62 ALESKTELKLEVIFYKKNG--YHEE 84
AL++K + +++ YKK+G + E
Sbjct: 66 ALQNKEPVTVQIQNYKKDGTMFWNE 90
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena
sativa} PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 63.9 bits (155), Expect = 1e-13
Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 4 NFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKAL 63
NFV+ + ++P PI++ SD F +L+ ++R +I+ G +FL GP+T +I A+
Sbjct: 23 NFVITDPRLPD-NPIIFASDSFLQLTEYSREEIL--GRNARFLQGPETDRATVRKIRDAI 79
Query: 64 ESKTELKLEVIFYKKNG 80
+++TE+ +++I Y K+G
Sbjct: 80 DNQTEVTVQLINYTKSG 96
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling
protein; HET: FMN; 2.63A {Pseudomonas putida}
Length = 162
Score = 60.7 bits (148), Expect = 3e-13
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 5 FVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALE 64
V+ + ++Y + F L+G++R +I+ C+FL G D + + +I KA+
Sbjct: 38 IVVAEKEGDD-TILIYVNAAFEYLTGYSRDEIL--YQDCRFLQGDDRDQLGRARIRKAMA 94
Query: 65 SKTELKLEVIFYKKNG--YHEE 84
+ + Y+K+G + E
Sbjct: 95 EGRPCREVLRNYRKDGSAFWNE 116
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase,
phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A
{Methylococcus capsulatus}
Length = 227
Score = 43.9 bits (104), Expect = 1e-06
Identities = 11/69 (15%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 18 IVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIFYK 77
I+Y +D FC +S + R +++ + + + + + + + + + E +
Sbjct: 11 ILYANDNFCAVSRYGREELVGQ--DHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRR 68
Query: 78 KNG--YHEE 84
K+G Y +
Sbjct: 69 KDGTRYWVD 77
Score = 40.9 bits (96), Expect = 1e-05
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 18 IVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIFYK 77
I+Y + C SG A +++ G + L P +E +++AL++ ++ +
Sbjct: 133 IIYANPALCRFSGMAEGELL--GQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRR 190
Query: 78 KNGYHEEEEEE 88
+ G + E+
Sbjct: 191 RTGPAPHDAED 201
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG,
structural genomics, center for structural genomics;
1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Length = 120
Score = 37.9 bits (89), Expect = 6e-05
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 18 IVYCSDGFCELSGFARAQIMQKGCACKFLY-GPDTSEEHKTQIEKALESKTELKLEVIFY 76
I C+D + ARA ++ G + + LY D E +I + + + I
Sbjct: 24 IEDCNDELAAIFRCARADLI--GRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMK 81
Query: 77 KKNG 80
+ G
Sbjct: 82 RAGG 85
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural
genomics, midwest center for structural genomics; HET:
PGE; 2.49A {Geobacter sulfurreducens}
Length = 114
Score = 31.4 bits (72), Expect = 0.018
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 19 VYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIFYKK 78
+ S + E G I+ P+ EE K+ + L + E F +
Sbjct: 26 LAVSRRWREDYGLGDGDILGM-SHYDIF--PEIGEEWKSVHRRGLAGEVIRVEEDCFVRA 82
Query: 79 NG 80
+G
Sbjct: 83 DG 84
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 2.00A {Colwellia psychrerythraea}
Length = 124
Score = 30.9 bits (71), Expect = 0.027
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 18 IVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIFYK 77
I+ + G L G+++ Q + G L+ P +E +++ A+E++ + E+
Sbjct: 29 IIDWNKGSETLYGYSKEQAI--GQPVNMLHVPGDTEHITSEVISAVENQGKWTGEIRMLH 86
Query: 78 KNG--YHEE 84
K+G E
Sbjct: 87 KDGHIGWIE 95
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain,
HTR-like protei protein structure initiative; HET: MSE
I3A; 1.73A {Haloarcula marismortui atcc 43049}
Length = 126
Score = 30.6 bits (70), Expect = 0.036
Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 18 IVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIFYK 77
I + FC G+ ++++ + +E+ +TQ+ + E ++ +
Sbjct: 39 ICEVNQRFCAELGYDESEVLGRSIW--EFDLMFDAEDVQTQLSGFSVDERRK-FEGLYER 95
Query: 78 KNG 80
++G
Sbjct: 96 RDG 98
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2,
protein structure initiati northeast structural
genomics consortium; 2.60A {Desulfitobacterium
hafniense}
Length = 126
Score = 30.3 bits (69), Expect = 0.044
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 18 IVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIFYK 77
++Y + + G+ ++M + E + + + K E L + K
Sbjct: 21 LLYANTAVPKKLGYTHEELMSMHIL--TITSAGKMAEGEKILAELFAGKKES-LPLSLEK 77
Query: 78 KNG 80
K G
Sbjct: 78 KEG 80
>2kcw_A Uncharacterized acetyltransferase YJAB; GNAT fold, acyltransferase;
NMR {Escherichia coli}
Length = 147
Score = 29.7 bits (67), Expect = 0.086
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 59 IEKALESKTELKLEVI--------FYKKNGYHEEEEEEEEEEEKEE 96
+E AL EL V FYKK G+ E ++ K
Sbjct: 92 VEHALSMAPELTTNVNEQNEQAVGFYKKVGFKVTGRSEVDDLGKPY 137
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.27
Identities = 6/65 (9%), Positives = 25/65 (38%), Gaps = 18/65 (27%)
Query: 53 EEHKTQIEKALESKTELKLEVI---------FYKKNGYHEEEE-------EEEEEEEKEE 96
EE + ++++ + ++ E + ++ E+ E ++ ++
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR--QSEQVEKNKINNRIADKAFYQQP 149
Query: 97 DKNLL 101
D +++
Sbjct: 150 DADII 154
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.35
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 55 HKTQIE-----KALESKTELKLEV--IFYKKNGYHEEEEEEEEEEE 93
H++ ++ K +S + + FY G+H + E E
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 0.49
Identities = 6/16 (37%), Positives = 10/16 (62%), Gaps = 3/16 (18%)
Query: 56 KTQIEKALESKTELKL 71
K ++K L++ LKL
Sbjct: 19 KQALKK-LQAS--LKL 31
Score = 26.1 bits (56), Expect = 1.9
Identities = 5/17 (29%), Positives = 8/17 (47%), Gaps = 2/17 (11%)
Query: 46 LYGPDTSEEH--KTQIE 60
LY D++ K +E
Sbjct: 31 LYADDSAPALAIKATME 47
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_A
Length = 329
Score = 27.8 bits (63), Expect = 0.52
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 83 EEEEEEEEEEEKEEDKNLLK 102
+ + E +EE+ E D LL+
Sbjct: 236 DVRQPEVKEEKPEFDPILLR 255
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 26.6 bits (59), Expect = 1.7
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 58 QIEKALESKTELKLEVIFYKKNGYHEEEEEEEEEEEKEEDKN 99
+I + ++ +L+ + + EEEE+EEEE E + +
Sbjct: 324 EIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEP 365
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 26.1 bits (58), Expect = 2.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 83 EEEEEEEEEEEKEEDKNLLK 102
EEE+++ EEEK + L K
Sbjct: 280 SEEEKQQREEEKAACEKLCK 299
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein,
transporter, enzyme IIC, phosphoenolpyruva
phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A
{Bacillus cereus}
Length = 442
Score = 26.1 bits (58), Expect = 2.4
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 73 VIFYKKNGYHEEEEEEEEEEEKEE 96
+ + K EE+ E E +
Sbjct: 419 LKIWDKQKIAEEKGEAAAENLYFQ 442
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 26.1 bits (58), Expect = 2.5
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 9/45 (20%)
Query: 45 FLYGPDTSEEHKTQIEK------ALESKTELKLE---VIFYKKNG 80
+ YG EE IEK ++ + + +F++ NG
Sbjct: 1023 YFYGLADGEELFADIEKGKTLVIVNQAVSATDSQGMVTVFFELNG 1067
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 26.1 bits (58), Expect = 2.5
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Query: 45 FLYGPDTSEEHKTQIEK------ALESKTELKLE---VIFYKKNG 80
F +G E + +I+K LE+ +E I+Y NG
Sbjct: 1006 FFFGMRNGETVEIEIDKGKRLIIKLETISEPDENGNRTIYYAMNG 1050
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 25.7 bits (57), Expect = 2.7
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 83 EEEEEEEEEEEKEEDKNLLK 102
+EEE++++EE+K + +NL K
Sbjct: 264 DEEEKKKQEEKKTKFENLCK 283
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 25.7 bits (57), Expect = 2.8
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 83 EEEEEEEEEEEKEEDKNLLK 102
E+ +E E ++E + LL
Sbjct: 513 SEKTKESREAIEKEFEPLLN 532
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 25.9 bits (57), Expect = 3.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 83 EEEEEEEEEEEKEEDKNLLK 102
+EE+ E E+E +E + L K
Sbjct: 533 TDEEKAEREKEIKEYEPLTK 552
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 25.7 bits (57), Expect = 3.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 84 EEEEEEEEEEKEEDKNLLK 102
+EE+ E E+E +E + L K
Sbjct: 262 DEEKAEREKEIKEYEPLTK 280
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 25.8 bits (57), Expect = 3.1
Identities = 9/54 (16%), Positives = 17/54 (31%)
Query: 47 YGPDTSEEHKTQIEKALESKTELKLEVIFYKKNGYHEEEEEEEEEEEKEEDKNL 100
+ E+ L+ + Y + E+ E E E ++ K L
Sbjct: 182 LKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKL 235
>3exn_A Probable acetyltransferase; GCN5-related N-acetyltransferase, MCSG,
P structural genomics, protein structure initiative;
HET: ACO; 1.80A {Thermus thermophilus}
Length = 160
Score = 25.5 bits (56), Expect = 3.4
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 8/36 (22%)
Query: 59 IEKALESKTELKLEVI--------FYKKNGYHEEEE 86
L+ L V F++ G+ ++
Sbjct: 113 FAAGLDGVRRLYAVVYGHNPKAKAFFQAQGFRYVKD 148
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; 2.50A {Bacillus halodurans} PDB:
3o3w_A
Length = 144
Score = 25.1 bits (55), Expect = 3.5
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 18 IVYCSDGFCELSGFARAQIMQKG 40
I YC C + A A+ Q G
Sbjct: 76 ITYCWGPACNGATKAAAKFAQLG 98
>3av0_A DNA double-strand break repair protein MRE11; DNA repair,
calcineurin-like phosphoesterase, ABC transporte
domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus
jannaschii} PDB: 3auz_A*
Length = 386
Score = 25.6 bits (56), Expect = 3.9
Identities = 9/57 (15%), Positives = 14/57 (24%), Gaps = 6/57 (10%)
Query: 52 SEEHKTQIEKALESKTELKLEVIFYKKNGYHEEEEEE------EEEEEKEEDKNLLK 102
E +ES +L V + + G + E KE
Sbjct: 325 DEFIDMPDNVDIESLNIKELLVDYANRQGIDGDLVLSLYKALLNNENWKELLDEYYN 381
>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold,
structural genomics, BSG structure funded by NIH; 1.89A
{Aquifex aeolicus} SCOP: d.92.1.15
Length = 150
Score = 24.9 bits (55), Expect = 4.2
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 79 NGY-HEEEEEEEEEEEKEEDK 98
GY HE+ EEE++ + E+
Sbjct: 121 LGYDHEKGGEEEKKFRELENY 141
>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP,
hydrolase, protein structure initiative, S2F, structure
2 function project; NMR {Haemophilus influenzae}
Length = 154
Score = 24.9 bits (55), Expect = 4.3
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 80 GY-HEEEEEEEEEEEKEED 97
GY H E++E EE E E
Sbjct: 121 GYDHIEDDEAEEMESLETQ 139
>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein
structure initiative, nysgxrc target T842, PFAM family
UPF0054, PSI; 2.70A {Escherichia coli} SCOP: d.92.1.15
Length = 155
Score = 24.9 bits (55), Expect = 4.3
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 80 GY-HEEEEEEEEEEEKEED 97
GY H E++E EE E E +
Sbjct: 121 GYDHIEDDEAEEMEALETE 139
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 25.2 bits (56), Expect = 4.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 84 EEEEEEEEEEKEEDKNLLK 102
+EE+ E E+E +E + L K
Sbjct: 262 DEEKAEREKEIKEYEPLTK 280
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded
beta-propeller, six- bladed beta-propeller; 1.79A
{Geobacillus stearothermophilus} SCOP: b.68.10.1
Length = 323
Score = 25.2 bits (56), Expect = 4.8
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 83 EEEEEEEEEEEKEEDKN 99
E++ E+ E +
Sbjct: 307 AEDKTEKLAAALEHHHH 323
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 25.2 bits (56), Expect = 5.1
Identities = 3/20 (15%), Positives = 9/20 (45%)
Query: 83 EEEEEEEEEEEKEEDKNLLK 102
+E +E +E ++ +
Sbjct: 494 ADEVDESAKEAEKALTPFID 513
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 24.9 bits (55), Expect = 5.4
Identities = 3/20 (15%), Positives = 9/20 (45%)
Query: 83 EEEEEEEEEEEKEEDKNLLK 102
+E +E +E ++ +
Sbjct: 494 ADEVDESAKEAEKALTPFID 513
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 24.4 bits (53), Expect = 6.8
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 60 EKALESKTELKLEVIFYKKNGYHEEEEEEEEEEEKEEDK 98
E + + + E+ +++ ++K E++E EEEE E
Sbjct: 184 ELSKDEEWEVMVDLFYHKTLP--TAEQKEAEEEEGAEGA 220
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1
d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A
2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A*
3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A*
1ynn_A* ...
Length = 315
Score = 24.4 bits (54), Expect = 7.7
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 83 EEEEEEEEEEEKEEDKNLLK 102
EE +E E E+++ L
Sbjct: 235 APEEAKEPEAPPEQEEELDL 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 24.4 bits (54), Expect = 8.0
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 12/55 (21%)
Query: 53 EEHKTQIEKA-----LESKTELKLEVIFYKKNGYHEEEEEEEEEEEKEEDKNLLK 102
+E + +IE A L EL+ + + E E E EK ++
Sbjct: 471 DEVRREIELAERQYDLNRAAELRYGEL-------PKLEAEVEALSEKLRGARFVR 518
>3fnc_A Protein LIN0611, putative acetyltransferase; GNAT, RIMI, structural
PSI-2, protein structure initiative, midwest center for
STR genomics, MCSG; 1.75A {Listeria innocua}
Length = 163
Score = 24.2 bits (53), Expect = 9.6
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 8/41 (19%)
Query: 58 QIEKALESKTELKLEVI--------FYKKNGYHEEEEEEEE 90
+ + V FYK G+ + EE E+
Sbjct: 108 VGMTLFHVPLPMFVNVEKGNETAIHFYKAKGFVQVEEFTED 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.131 0.371
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,498,088
Number of extensions: 78874
Number of successful extensions: 812
Number of sequences better than 10.0: 1
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 151
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.2 bits)