RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8548
(102 letters)
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 46.2 bits (108), Expect = 1e-08
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 2 NSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEH 55
+ F++ NA+V + ++YC+DGFCEL G++RA++MQ+ C C FL+GP T
Sbjct: 1 SRKFIIANARVEN-CAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRA 53
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1
domain {Green algae (Chlamydomonas reinhardtii) [TaxId:
3055]}
Length = 109
Score = 44.8 bits (105), Expect = 5e-08
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 1 MNSNFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIE 60
+ FV+ +A +P P+VY S+GF ++G+ +++ G C+FL G T + +I
Sbjct: 2 LRHTFVVADATLPD-CPLVYASEGFYAMTGYGPDEVL--GHNCRFLQGEGTDPKEVQKIR 58
Query: 61 KALESKTELKLEVIFYKKN 79
A++ + ++ Y+K+
Sbjct: 59 DAIKKGEACSVRLLNYRKD 77
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain,
lov2 {Maidenhair fern (Adiantum capillus-veneris)
[TaxId: 13818]}
Length = 104
Score = 39.9 bits (92), Expect = 4e-06
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 4 NFVLGNAQVPSLYPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKAL 63
+FV+ + ++P PI++ SD F EL+ + R +++ G C+FL G T + I A+
Sbjct: 2 SFVITDPRLPD-NPIIFASDRFLELTEYTREEVL--GNNCRFLQGRGTDRKAVQLIRDAV 58
Query: 64 ESKTELKLEVIFYKKNGYH 82
+ + ++ ++V+ Y K G
Sbjct: 59 KEQRDVTVQVLNYTKGGRA 77
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 26.7 bits (58), Expect = 0.36
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 18 IVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTE 68
I+ +D C L G++ ++ + + S+ + E+ +E+
Sbjct: 21 ILVANDKACGLLGYSSQDLIGQKLTQ--FFLRSDSDVVEALSEEHMEADGH 69
>d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 163
Score = 25.5 bits (54), Expect = 1.4
Identities = 6/74 (8%), Positives = 15/74 (20%)
Query: 16 YPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIF 75
+ E S + G + + + E +
Sbjct: 72 WRAFDGYRHTREHSVYVHKDARGHGIGKRLMQALIDHAGGNDVHVLIAAIEAENTASIRL 131
Query: 76 YKKNGYHEEEEEEE 89
++ G+ E
Sbjct: 132 HESLGFRVVGRFSE 145
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO)
{Haemophilus influenzae [TaxId: 727]}
Length = 225
Score = 25.5 bits (54), Expect = 1.4
Identities = 9/47 (19%), Positives = 23/47 (48%)
Query: 16 YPIVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKA 62
+ ++ F +G++ ++ QK A + + D+ E HK +++
Sbjct: 158 HLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNV 204
>d1xm5a_ d.92.1.15 (A:) Hypothetical protein YbeY {Escherichia coli
[TaxId: 562]}
Length = 152
Score = 25.0 bits (54), Expect = 1.9
Identities = 14/66 (21%), Positives = 24/66 (36%)
Query: 37 MQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLEVIFYKKNGYHEEEEEEEEEEEKEE 96
M+ + E+ + K LE+ + GY E++E EE E E
Sbjct: 78 MEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALE 137
Query: 97 DKNLLK 102
+ +L
Sbjct: 138 TEIMLA 143
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 24.9 bits (53), Expect = 1.9
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 83 EEEEEEEEEEEKEEDKN 99
E++ E+ E +
Sbjct: 307 AEDKTEKLAAALEHHHH 323
Score = 23.0 bits (48), Expect = 9.9
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 83 EEEEEEEEEEEKEEDKN 99
E E++ E+ E +
Sbjct: 306 EAEDKTEKLAAALEHHH 322
>g1or0.1 d.153.1.2 (A:,B:) Cephalosporin acylase {Pseudomonas sp.,
glutarylamidase [TaxId: 306]}
Length = 674
Score = 24.9 bits (53), Expect = 2.1
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 56 KTQIEKALESKTELKLE 72
+ Q+E A++ +T +
Sbjct: 658 REQVEAAVQERTPFNFK 674
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine
5'-diphospho)-2C-methyl-D-erythritol kinase IspE
{Thermus thermophilus [TaxId: 274]}
Length = 148
Score = 24.7 bits (53), Expect = 2.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 66 KTELKLEVIFYKKNGYHE 83
K L L V F +++GYHE
Sbjct: 8 KVNLGLSVRFRREDGYHE 25
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine
5'-diphospho)-2C-methyl-D-erythritol kinase IspE
{Escherichia coli [TaxId: 562]}
Length = 163
Score = 24.3 bits (52), Expect = 3.0
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 66 KTELKLEVIFYKKNGYHE 83
K L L + + +GYH
Sbjct: 10 KLNLFLYITGQRADGYHT 27
>d1d8ca_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId:
562]}
Length = 720
Score = 24.2 bits (52), Expect = 3.8
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 1 MNSNFVL--GNAQVPSLYPIVYCSDGFCELSG------FARAQIMQKGCACKFL 46
MN+ + L NA+ SLY +Y SD + R + + +FL
Sbjct: 120 MNARYALNAANARWGSLYDALYGSDIIPQEGAMVSGYDPQRGEQVIAW-VRRFL 172
>d2fl4a1 d.108.1.1 (A:1-146) Probable spermine/spermidine
acetyltransferase EF1086 {Enterococcus faecalis [TaxId:
1351]}
Length = 146
Score = 23.4 bits (49), Expect = 5.2
Identities = 12/78 (15%), Positives = 19/78 (24%), Gaps = 2/78 (2%)
Query: 18 IVYCSDGFCELSGFARAQIMQKGCACKFLYGPDTSEEHKTQIEKALESKTELKLE--VIF 75
DG L F Q Q K + + L +
Sbjct: 62 YGRWQDGRVWLDRFLIDQRFQGQGYGKAACRLLMLKLIEKYQTNKLYLSVYDTNSSAIRL 121
Query: 76 YKKNGYHEEEEEEEEEEE 93
Y++ G+ E + E
Sbjct: 122 YQQLGFVFNGELDTNGER 139
>d2fiwa1 d.108.1.1 (A:2-157) Probable N-acetyltransferase RPA1999
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 156
Score = 23.3 bits (49), Expect = 6.3
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 75 FYKKNGYHEEEEEEEE 90
F+ K GY ++
Sbjct: 126 FFAKRGYVAKQRNTVS 141
>d2cy2a1 d.108.1.1 (A:1-174) Probable acetyltransferase TTHA1209
{Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 23.4 bits (49), Expect = 6.7
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 75 FYKKNGYHEEEEEEEEEEEKEEDK 98
FY+ G E E E + +
Sbjct: 139 FYEHLGGVLLGEREIELGGAKLWE 162
>d2jdca1 d.108.1.1 (A:2-146) Probable acetyltransferase YitI
{Bacillus licheniformis [TaxId: 1402]}
Length = 145
Score = 22.8 bits (48), Expect = 9.2
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 75 FYKKNGYHEEEEEEEEEE 92
+YKK G+ E+ E +
Sbjct: 116 YYKKLGFSEQGEVFDTPP 133
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.131 0.371
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 372,972
Number of extensions: 15793
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 53
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.6 bits)