BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8550
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 4/211 (1%)
Query: 105 AFCPPD---CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSS 160
A C D C CN+ V C L IP + ++L L+ N++ ++ S A +
Sbjct: 3 ALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTK 62
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L+ + L+ N+L +P F+ + L L + NKL ++ F L +L L L N L+
Sbjct: 63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM 280
LP R+F L+ L L LG N + + + F+ LT+L+ L L +NQL+ VP +F L
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182
Query: 281 LAELRVGLNVFTTLADGAFNGLGRLSALDLR 311
L L++ N + +GAF+ L +L L L+
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 137 SIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
S++ L L N++K V + A + L+ + L +NQL +P F+ EKL LQL N
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217
Query: 196 SSVNNKTFIGLKSLK 210
N K LK
Sbjct: 218 DCTCNGIIYMAKWLK 232
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 4/219 (1%)
Query: 102 QASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSS 160
+ CP C C+++ V C L +P ++ + + L L+ N I+ + + +
Sbjct: 1 ETGTSCPAACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRH 60
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L+ + LS N + I + F L L+L N+L++V + F L L+ L LR N +E
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 221 DLPDRLFAPLSHLEELDLGQ-NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG 279
+P F + L LDLG+ R+ I +A FEGL LR L L L+ + P+ L
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDI--PNLTALV 178
Query: 280 MLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
L EL + N + G+F GL L L L A + +
Sbjct: 179 RLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L+ ++LS N+L I F+ L +L L H +++++ F LKSL+ LNL N L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM 239
Query: 221 DLPDRLFAPLSHLEELDLGQN 241
LP LF PL LE + L N
Sbjct: 240 SLPHDLFTPLHRLERVHLNHN 260
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Query: 136 PSIQRLVL-KYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
PS++RL L + R++ + ++A + +L++++L L +IP +L EL+L+ N
Sbjct: 131 PSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGN 188
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
+L + +F GL SL+ L L + + F L LEEL+L N + + F
Sbjct: 189 RLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTP 248
Query: 254 LTALRILYLDDN 265
L L ++L+ N
Sbjct: 249 LHRLERVHLNHN 260
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 103/216 (47%), Gaps = 8/216 (3%)
Query: 102 QASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSL 161
+ CP C C+++ V C L +P ++ + + L L+ N I+ + + + L
Sbjct: 1 ETGTSCPAACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRT--DTFKHL 58
Query: 162 QHVD---LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
+H++ LS N + I + F L L+L N+L++V + F L L+ L LR N
Sbjct: 59 RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 219 LEDLPDRLFAPLSHLEELDLGQ-NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY 277
+E +P F + L LDLG+ R+ I +A FEGL LR L L L+ + P+
Sbjct: 119 IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDI--PNLTA 176
Query: 278 LGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 313
L L EL + N + G+F GL L L L A
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L N + + TF L+ L++L L N + + F L L L+L NR++ +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG-LNVFTTLADGAFNGLGRLS 306
FE L+ LR L+L +N + S+P+ +F + L L +G L +++ AF GL L
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 307 ALDLRGAGLTNM 318
L+L G+ N+
Sbjct: 160 YLNL---GMCNL 168
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L+ ++LS N+L I F+ L +L L H +++++ F LKSL+ LNL N L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM 239
Query: 221 DLPDRLFAPLSHLEELDLGQN 241
LP LF PL LE + L N
Sbjct: 240 SLPHDLFTPLHRLERVHLNHN 260
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Query: 136 PSIQRLVL-KYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
PS++RL L + R++ + ++A + +L++++L L +IP +L EL+L+ N
Sbjct: 131 PSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGN 188
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
+L + +F GL SL+ L L + + F L LEEL+L N + + F
Sbjct: 189 RLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTP 248
Query: 254 LTALRILYLDDN 265
L L ++L+ N
Sbjct: 249 LHRLERVHLNHN 260
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 1/182 (0%)
Query: 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHN 169
C CN+ V C+ +LD +P + ++L L+ + T+ D+ + + L ++L +N
Sbjct: 10 CTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN 69
Query: 170 QLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP 229
QL + F+ +L L L +N+L+S+ F L L L L GN L+ LP +F
Sbjct: 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 230 LSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
L+ L+EL L N++ I F+ LT L+ L L NQL+SVP +F LG L + + N
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 290 VF 291
F
Sbjct: 190 QF 191
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
K ++ +G L+ +P + A E+LDL ++ + A F GLT L L LD NQL++
Sbjct: 17 KEVDCQGKSLDSVPSGIPA---DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
+ F L L L + N +L G F+ L +L L L G L ++
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL 122
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 1/182 (0%)
Query: 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHN 169
C CN+ V C+ +LD +P + ++L L+ + T+ D+ + + L ++L +N
Sbjct: 10 CTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN 69
Query: 170 QLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP 229
QL + F+ +L L L +N+L+S+ F L L L L GN L+ LP +F
Sbjct: 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 230 LSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
L+ L+EL L N++ I F+ LT L+ L L NQL+SVP +F LG L + + N
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 290 VF 291
F
Sbjct: 190 QF 191
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
K ++ +G L+ +P + A E+LDL ++ + A F GLT L L LD NQL++
Sbjct: 17 KEVDCQGKSLDSVPSGIPA---DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
+ F L L L + N +L G F+ L +L L L G L ++
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL 122
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 1/205 (0%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVD 165
CPP C+C+ + V C +P + + L L NRIKT++ + L+ ++
Sbjct: 3 CPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELE 62
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
L+ N + + F L L L N+L + F GL +L L++ N + L D
Sbjct: 63 LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY 122
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
+F L +L+ L++G N + I F GL +L L L+ L S+PT + +L L LR
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182
Query: 286 VGLNVFTTLADGAFNGLGRLSALDL 310
+ + D +F L RL L++
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEI 207
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 154 AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLN 213
A++ L+ ++LS+N + I +L E+QL +L+ V F GL L+VLN
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302
Query: 214 LRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
+ GN L L + +F + +LE L L N ++
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%)
Query: 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
L L + H L++V L L+ LNL N + + + L L+E+ L +++
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285
Query: 245 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
++ F GL LR+L + NQL ++ F +G L L
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 103/221 (46%), Gaps = 3/221 (1%)
Query: 107 CPPDCDCNDETLVVT-CKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHV 164
CP C C +E V T C + L +P+ + + QR+ L NRI V +A + +L +
Sbjct: 1 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 60
Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHN-KLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
L N L I F L +L L+ N +L SV+ TF GL L L+L L++L
Sbjct: 61 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 120
Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
LF L+ L+ L L N + + F L L L+L N++ SVP +F L L
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA 324
L + N + AF LGRL L L L+ + ++A
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 221
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 103/221 (46%), Gaps = 3/221 (1%)
Query: 107 CPPDCDCNDETLVVT-CKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHV 164
CP C C +E V T C + L +P+ + + QR+ L NRI V +A + +L +
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61
Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHN-KLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
L N L I F L +L L+ N +L SV+ TF GL L L+L L++L
Sbjct: 62 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121
Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
LF L+ L+ L L N + + F L L L+L N++ SVP +F L L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA 324
L + N + AF LGRL L L L+ + ++A
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 95/207 (45%), Gaps = 3/207 (1%)
Query: 107 CPPDCDCNDETLVVT-CKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHV 164
CP C C +E V T C + L +P + S QR+ L NRI V +A Q +L +
Sbjct: 1 CPGACVCYNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTIL 60
Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHN-KLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
L N L I F L +L L+ N +L V+ TF GL L L+L L++L
Sbjct: 61 WLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELG 120
Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
LF L+ L+ L L N + + F L L L+L N++ SVP +F L L
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDR 180
Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDL 310
L + N + AF LGRL L L
Sbjct: 181 LLLHQNHVARVHPHAFRDLGRLMTLYL 207
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
P+++ L L N++ + SA++ ++L ++ L+ NQL ++P F+ L EL L N+L
Sbjct: 63 PNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
S+ + F L +L LNL N L+ LP +F L++L ELDL N++ + + F+ LT
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181
Query: 256 ALRILYLDDNQLRSVPTPSFIYLGML 281
L+ L L NQL+SVP F L L
Sbjct: 182 QLKDLRLYQNQLKSVPDGVFDRLTSL 207
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 3/169 (1%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
SI +++ + IK+V IQ+ +++++ L N+L +I + L L L N+L
Sbjct: 42 SIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ 98
Query: 197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA 256
S+ N F L +LK L L N L+ LPD +F L++L L+L N++ + + F+ LT
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158
Query: 257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305
L L L NQL+S+P F L L +LR+ N ++ DG F+ L L
Sbjct: 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Query: 176 IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEE 235
++G + + L L NKL ++ L +L L L GN L+ LP+ +F L++L+E
Sbjct: 56 VQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113
Query: 236 LDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295
L L +N++ + F+ LT L L L NQL+S+P F L L EL + N +L
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173
Query: 296 DGAFNGLGRLSALDL 310
+G F+ L +L L L
Sbjct: 174 EGVFDKLTQLKDLRL 188
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 141 LVLKYNRIKTVDSAI-QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVN 199
L+L N+++++ + + ++L+ + L NQL ++P F+ L L L HN+L S+
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 200 NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRI 259
F L +L L+L N L+ LP+ +F L+ L++L L QN++ + F+ LT+L+
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209
Query: 260 LYLDDN 265
++L DN
Sbjct: 210 IWLHDN 215
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
CP +C C D VV C L V+P + + L L N+ V + Y L +DL
Sbjct: 4 CPTECTCLDT--VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL 61
Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
S+N++ + + F +L+ L L++N+L + +TF GLKSL++L+L GN + +P+
Sbjct: 62 SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121
Query: 227 FAPLSHLEELDLGQN 241
F LS L L +G N
Sbjct: 122 FNDLSALSHLAIGAN 136
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 212 LNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 271
L L GN +P L + HL +DL NRIS + F +T L L L N+LR +P
Sbjct: 36 LYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 272 TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSAL 308
+F L L L + N + + +GAFN L LS L
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
P+++ L L N++ + SA++ ++L ++ L+ NQL ++P F+ L EL L N+L
Sbjct: 63 PNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
S+ + F L +L L L N L+ LP +F L++L LDL N++ + + F+ LT
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLT 181
Query: 256 ALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
L+ L L+DNQL+SVP F L L +
Sbjct: 182 QLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 3/170 (1%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
SI +++ + IK+V IQ+ +++++ L N+L +I + L L L N+L
Sbjct: 42 SIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ 98
Query: 197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA 256
S+ N F L +LK L L N L+ LPD +F L++L L L N++ + + F+ LT
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTN 158
Query: 257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 306
L L LD+NQL+S+P F L L +L + N ++ DG F+ L L+
Sbjct: 159 LTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLT 208
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Query: 176 IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEE 235
++G + + L L NKL ++ L +L L L GN L+ LP+ +F L++L+E
Sbjct: 56 VQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113
Query: 236 LDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295
L L +N++ + F+ LT L LYL NQL+S+P F L L L + N +L
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLP 173
Query: 296 DGAFNGLGRLSALDL 310
+G F+ L +L L L
Sbjct: 174 EGVFDKLTQLKQLSL 188
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Query: 141 LVLKYNRIKTVDSAI-QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVN 199
L+L N+++++ + + ++L+ + L NQL ++P F+ L L L HN+L S+
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLP 149
Query: 200 NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRI 259
F L +L L+L N L+ LP+ +F L+ L++L L N++ + F+ LT+L
Sbjct: 150 KGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTH 209
Query: 260 LYLDDN 265
++L +N
Sbjct: 210 IWLLNN 215
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAI-QFYSSLQHVD 165
CP C C+ T V C +P + L L+ N +K++ + + +SL +
Sbjct: 1 CPSRCSCSGTT--VECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLY 58
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
L N+L ++P F L L L+ N+L S+ N F L LK L L N L+ LPD
Sbjct: 59 LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG 118
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265
+F L+ L++L L QN++ + F+ LT+L+ ++L DN
Sbjct: 119 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 65/119 (54%)
Query: 163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
++DL N L ++P F+ L +L L NKL S+ N F L SL LNL N L+ L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
P+ +F L+ L+EL L N++ + F+ LT L+ L L NQL+SVP F L L
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 64/118 (54%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L N L S+ N F L SL L L GN L+ LP+ +F L+ L L+L N++ +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305
F+ LT L+ L L+ NQL+S+P F L L +LR+ N ++ DG F+ L L
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 54/99 (54%)
Query: 212 LNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 271
L+L N L+ LP+ +F L+ L +L LG N++ + F LT+L L L NQL+S+P
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 272 TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
F L L EL + N +L DG F+ L +L L L
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 8/206 (3%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVD 165
CP C C+++ V C L +P + + + L L N I+ + + + L+ +
Sbjct: 46 CPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQ 105
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
L N + I + F L L+L N L+ + + F L L+ L LR N +E +P
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY 165
Query: 226 LFAPLSHLEELDLGQ-NRISRIDQACFEGLTALRILYLDDNQLRSVP--TPSFIYLGMLA 282
F + L LDLG+ ++ I + FEGL L+ L L ++ +P TP L L
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP----LVGLE 221
Query: 283 ELRVGLNVFTTLADGAFNGLGRLSAL 308
EL + N F + G+F+GL L L
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKL 247
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 54/101 (53%)
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
+ LNL N ++ + F L HLE L LG+N I +I+ F GL +L L L DN L
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137
Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
+P+ +F YL L EL + N ++ AFN + L LDL
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L N + + TF L L+VL L N + + F L+ L L+L N ++ I
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG-LNVFTTLADGAFNGLGRLS 306
FE L+ LR L+L +N + S+P+ +F + L L +G L +++GAF GL L
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199
Query: 307 ALDLRGAGLTNM 318
L+L + +M
Sbjct: 200 YLNLGMCNIKDM 211
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L+ +++S N I F L +L + ++++S + F GL SL LNL N L
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
Query: 221 DLPDRLFAPLSHLEELDLGQN 241
LP LF PL +L EL L N
Sbjct: 280 SLPHDLFTPLRYLVELHLHHN 300
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 258 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
R L L +N ++ + +F +L L L++G N + GAFNGL L+ L+L LT
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 106/259 (40%), Gaps = 52/259 (20%)
Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQ 162
++ CP C C+++ V C NL +P ++ + + L L N+I+ + + + L+
Sbjct: 31 SAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIK--VNSFKHLR 88
Query: 163 HVD---LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFL 219
H++ LS N + I I F L L+L N+L+++ N F+ L LK L LR N +
Sbjct: 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
Query: 220 EDLPDRLF-----------------------------------------------APLSH 232
E +P F PL
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK 208
Query: 233 LEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
L+ELDL N +S I F+GL L+ L++ +Q++ + +F L L E+ + N T
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Query: 293 TLADGAFNGLGRLSALDLR 311
L F L L + L
Sbjct: 269 LLPHDLFTPLHHLERIHLH 287
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 28/132 (21%)
Query: 136 PSIQRLVL-KYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
PS++RL L + R+ + + A + S+L++++L+ L IP P KL EL L+ N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGN 217
Query: 194 KLSSVNNKTFIGL------------------------KSLKVLNLRGNFLEDLPDRLFAP 229
LS++ +F GL +SL +NL N L LP LF P
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277
Query: 230 LSHLEELDLGQN 241
L HLE + L N
Sbjct: 278 LHHLERIHLHHN 289
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 314
T R+L L +NQ++ + SF +L L L++ N T+ GAFNGL L+ L+L
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 315 LTNM 318
LT +
Sbjct: 124 LTTI 127
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 25/189 (13%)
Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQ 162
S CP C C++ +V C+ L IP L +I + L+ N IK
Sbjct: 1 GSLHCPAACTCSNN--IVDCRGKGLTEIPTNLPETITEIRLEQNTIKV------------ 46
Query: 163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
IP F P +KL + L++N++S + F GL+SL L L GN + +L
Sbjct: 47 -----------IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282
P LF L L+ L L N+I+ + F+ L L +L L DN+L+++ +F L +
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 283 ELRVGLNVF 291
+ + N F
Sbjct: 156 TMHLAQNPF 164
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 25/189 (13%)
Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQ 162
S CP C C++ +V C+ L IP L +I + L+ N IK
Sbjct: 1 GSLHCPAACTCSNN--IVDCRGKGLTEIPTNLPETITEIRLEQNTIKV------------ 46
Query: 163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
IP F P +KL + L++N++S + F GL+SL L L GN + +L
Sbjct: 47 -----------IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282
P LF L L+ L L N+I+ + F+ L L +L L DN+L+++ +F L +
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 283 ELRVGLNVF 291
+ + N F
Sbjct: 156 TMHLAQNPF 164
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKV-LNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
E++ N L+SV G+ S L L N L+ LP +F L+ L +L L QN+I
Sbjct: 10 TEIRCNSKGLTSVP----TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ 65
Query: 245 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR 304
+ F+ LT L ILYL +N+L+S+P F L L EL + N ++ DG F+ L
Sbjct: 66 SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS 125
Query: 305 LSALDLRGAGLTNMMGHSMALGDYL-HWI 332
L + L TN S DYL W+
Sbjct: 126 LQKIWLH----TNPWDCSCPRIDYLSRWL 150
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAI-QFYSSLQHVD 165
CP C C+ + C L +P + S RL L+ N+++++ + + L +
Sbjct: 1 CPSRCSCSGTE--IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLS 58
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
LS NQ+ ++P F+ KL L L+ NKL S+ N F L LK L L N L+ +PD
Sbjct: 59 LSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG 118
Query: 226 LFAPLSHLEELDLGQN 241
+F L+ L+++ L N
Sbjct: 119 IFDRLTSLQKIWLHTN 134
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 82/183 (44%), Gaps = 9/183 (4%)
Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYS--S 160
S CP C C E V C L+ IP + L L N +++ F
Sbjct: 1 GSLACPEKCRC--EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQ 58
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L+ ++ S+N++ +I FE + E+ L N+L +V +K F GL+SLK L LR N +
Sbjct: 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM 280
+ + F LS + L L N+I+ + F+ L +L L L N P YL
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN-----PFNCNCYLAW 173
Query: 281 LAE 283
L E
Sbjct: 174 LGE 176
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVN-NKTFIGLKSLKVLNLRGNFLEDL 222
VD S+ +L IP PQ EL+LN+N+ + + F L L+ +N N + D+
Sbjct: 16 VDCSNQKLNKIP--EHIPQ-YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72
Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282
+ F S + E+ L NR+ + F+GL +L+ L L N++ V SFI L +
Sbjct: 73 EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132
Query: 283 ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332
L + N TT+A GAF+ L LS L N++ + YL W+
Sbjct: 133 LLSLYDNQITTVAPGAFDTLHSLSTL--------NLLANPFNCNCYLAWL 174
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 4/156 (2%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP-IRGFEPQEKLVELQLNHNKL 195
S++ L L +N + T+ S L+H+D H+ L + F L+ L ++H
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
N F GL SL+VL + GN ++ LPD +F L +L LDL Q ++ ++ F
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
L++L++L + NQL+SVP F L L ++ + N
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 10/129 (7%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
P +Q L L I+T+ D A Q S L + L+ N + ++ + F L +L
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
L+S+ N LK+LK LN+ N ++ LP+ F+ L++LE LDL N+I I C
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSI--YC-- 166
Query: 253 GLTALRILY 261
T LR+L+
Sbjct: 167 --TDLRVLH 173
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + +F L+VL+L ++ + D + LSHL L L N I +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
F GL++L+ L + L S+ +L L EL V N+ + F+ L L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 307 ALDL 310
LDL
Sbjct: 153 HLDL 156
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
+PD L P S + LDL N + + F L++L L +++++ ++ L L
Sbjct: 22 IPDNL--PFS-TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 282 AELRVGLNVFTTLADGAFNGLG---RLSALDLRGAGLTNM-MGHSMALGD 327
+ L + N +LA GAF+GL +L A++ A L N +GH L +
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 26/133 (19%)
Query: 181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ 240
P + ++L N +++ G SLK L+L N + + F L LE LD
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQH 405
Query: 241 NRISRIDQACFEGLTALR-ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 299
+ + ++ + F +LR ++YLD + + RV N G F
Sbjct: 406 SNLKQMSE--FSVFLSLRNLIYLDISHTHT---------------RVAFN-------GIF 441
Query: 300 NGLGRLSALDLRG 312
NGL L L + G
Sbjct: 442 NGLSSLEVLKMAG 454
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 67/131 (51%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
S ++ DLS +++ + F L +L L N+++ +++ F GL L LNL NF
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 278
L + R+F L LE LDL N I + F GL L+ L LD NQL+SVP F L
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394
Query: 279 GMLAELRVGLN 289
L ++ + N
Sbjct: 395 TSLQKIWLHTN 405
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Query: 173 NIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSH 232
N +G E + L+ +K+ ++ F L+ L L N + + D F L+H
Sbjct: 266 NFTFKGLEA-SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324
Query: 233 LEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
L +L+L QN + ID FE L L +L L N +R++ SF+ L L EL + N
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Query: 293 TLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYL-HWI 332
++ DG F+ L L + L TN S DYL W+
Sbjct: 385 SVPDGIFDRLTSLQKIWLH----TNPWDCSCPRIDYLSRWL 421
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 138 IQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
+++L L N I +D +A + L ++LS N L +I R FE +KL L L++N +
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
++ +++F+GL +LK L L N L+ +PD +F L+ L+++ L N
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 192 HNKLSSVNNKTFIGLKS--LKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQA 249
H +N TF GL++ +K +L + + L +F+ + LE+L L QN I++ID
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317
Query: 250 CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALD 309
F GLT L L L N L S+ + F L L L + N L D +F GL L L
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377
Query: 310 L 310
L
Sbjct: 378 L 378
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 231 SHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSV-PTPSFIYLGMLAELRVGLN 289
+H+ +DL N I+ +++ F L L+ L ++ V +F L L L++ N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 290 VFTTLADGAFNGLGRLSALDLRGAGL 315
F L GAFNGL L L L L
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNL 115
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 65/112 (58%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
SS++H+DLSH + ++ R FE + L L L +NK++ + ++ F GL +L+VLNL N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSV 270
L +L F L + +DL +N I+ I F+ L L+ L L DN L ++
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 199 NNKTFIGL--KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA 256
+ TF GL S++ L+L F+ L R+F L L+ L+L N+I++I F GL
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315
Query: 257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
L++L L N L + + +F L +A + + N + D F L +L LDLR LT
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Query: 317 NM 318
+
Sbjct: 376 TI 377
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%)
Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
L L+H + S+N++ F LK LKVLNL N + + D F L +L+ L+L N + +
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
Query: 247 DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
+ F GL + + L N + + +F +L L L + N TT+
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 90/229 (39%), Gaps = 71/229 (31%)
Query: 138 IQRLVLKYNRI-KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
++ L L YN+I K D A +LQ ++LS+N L + F K+ + L N ++
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 197 SVNNKTFIGLKSLKVLNLRGN------FLEDLPD--------------RLFAPLSHLEE- 235
+ ++TF L+ L+ L+LR N F+ +PD L A L HL E
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN 411
Query: 236 -------------------LDLGQNRISRI--DQA------------------------- 249
L L QNR S DQ
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471
Query: 250 ---CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295
FEGL+ L++LYL+ N L S+P F +L L L + N T L+
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV---GLNVFTTLADGAFNGL 302
ID+ F L LRIL L +++ + +F L L ELR+ GL+ L DG F L
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD-AVLKDGYFRNL 122
Query: 303 GRLSALDLRGAGLTNMMGH 321
L+ LDL + ++ H
Sbjct: 123 KALTRLDLSKNQIRSLYLH 141
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 135 NPSIQRLVLKYNRIKTVDSA------IQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVEL 188
NPS+++L L N ++ + S LQ + L+HN L ++P F L L
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509
Query: 189 QLNHNKLSSVNNKTFIGLKSLKVLNL-RGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
LN N+L+ +++ +L++L++ R L PD +F LS LD+ N+
Sbjct: 510 SLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPD-VFVSLS---VLDITHNKF 559
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L +DLSHNQL ++P+ G + L L ++ N+L+S+ GL L+ L L+GN L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
LP L P LE+L L N+++ + GL L L L +N L ++P F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
LS N L + P +L +L L+ +L+ + + L L L+L N L+ LP
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP-L 94
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
L L L LD+ NR++ + GL L+ LYL N+L+++P L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLR 311
+ N T L G NGL L L L+
Sbjct: 155 LANNQLTELPAGLLNGLENLDTLLLQ 180
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + T + L LNL L L ++ L L LDL N++ +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP 93
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
+ L AL +L + N+L S+P + LG L EL + N TL G +L
Sbjct: 94 -LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 308 LDLRGAGLTNM 318
L L LT +
Sbjct: 153 LSLANNQLTEL 163
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L +DLSHNQL ++P+ G + L L ++ N+L+S+ GL L+ L L+GN L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
LP L P LE+L L N+++ + GL L L L +N L ++P F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
LS N L + P +L +L L+ +L+ + + L L L+L N L+ LP
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP-L 94
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
L L L LD+ NR++ + GL L+ LYL N+L+++P L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLR 311
+ N T L G NGL L L L+
Sbjct: 155 LANNQLTELPAGLLNGLENLDTLLLQ 180
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + T + L LNL L L ++ L L LDL N++ +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP 93
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
+ L AL +L + N+L S+P + LG L EL + N TL G +L
Sbjct: 94 -LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 308 LDLRGAGLTNM 318
L L LT +
Sbjct: 153 LSLANNQLTEL 163
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYS--SL 161
SA CP C C+ T V C+ +P + + Q L L N+I ++ + F S +L
Sbjct: 10 SAACPSQCSCSGTT--VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGV-FDSLINL 66
Query: 162 QHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED 221
+ + L NQL +P+ F+ +L L L N+L+ + + F L LK L + N L +
Sbjct: 67 KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265
LP R L+HL L L QN++ I F+ L++L YL N
Sbjct: 127 LP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 156 QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215
Q S VD + ++P G ++ L L+ N+++ + F L +LK L L
Sbjct: 16 QCSCSGTTVDCRSKRHASVPA-GIPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYLG 72
Query: 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
N L LP +F L+ L LDLG N+++ + A F+ L L+ L++ N+L +P
Sbjct: 73 SNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GI 131
Query: 276 IYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
L L L + N ++ GAF+ L L+ L G
Sbjct: 132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 314
T +ILYL DNQ+ + F L L EL +G N L G F+ L +L+ LDL
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 315 LT 316
LT
Sbjct: 100 LT 101
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L +DLSHNQL ++P+ G + L L ++ N+L+S+ GL L+ L L+GN L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
LP L P LE+L L N+++ + GL L L L +N L ++P F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
LS N L + P +L +L L+ +L+ + + L L L+L N L+ LP
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP-L 94
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
L L L LD+ NR++ + GL L+ LYL N+L+++P L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLR 311
+ N T L G NGL L L L+
Sbjct: 155 LANNQLTELPAGLLNGLENLDTLLLQ 180
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPI 176
L V C + L +P L L L N + T + + Y+ L ++L +L + +
Sbjct: 13 LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
G P L L L+HN+L S+ +G L +L VL++ N L LP L L+
Sbjct: 73 DGTLP--VLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
EL L N + + L L L +NQL +P L L L + N T+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 295 ADGAF 299
G F
Sbjct: 188 PKGFF 192
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + T + L LNL L L ++ L L LDL N++ +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL- 92
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
+ L AL +L + N+L S+P + LG L EL + N TL G +L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 308 LDLRGAGLTNM 318
L L LT +
Sbjct: 153 LSLANNQLTEL 163
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L +DLSHNQL ++P+ G + L L ++ N+L+S+ GL L+ L L+GN L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
LP L P LE+L L N+++ + GL L L L +N L ++P F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
LS N L + P +L +L L+ +L+ + + L L L+L N L+ LP
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP-L 94
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
L L L LD+ NR++ + GL L+ LYL N+L+++P L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLR 311
+ N T L G NGL L L L+
Sbjct: 155 LANNQLTELPAGLLNGLENLDTLLLQ 180
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + T + L LNL L L ++ L L LDL N++ +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL- 92
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
+ L AL +L + N+L S+P + LG L EL + N TL G +L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 308 LDLRGAGLTNM 318
L L LT +
Sbjct: 153 LSLANNQLTEL 163
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L +DLSHNQL ++P+ G + L L ++ N+L+S+ GL L+ L L+GN L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
LP L P LE+L L N ++ + GL L L L +N L ++P F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
LS N L + P +L +L L+ +L+ + + L L L+L N L+ LP
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP-L 94
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
L L L LD+ NR++ + GL L+ LYL N+L+++P L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLR 311
+ N T L G NGL L L L+
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQ 180
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVNIPI 176
L V C + +L +P L L L N + T A + Y+ L ++L +L + +
Sbjct: 13 LEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
G P L L L+HN+L S+ +G L +L VL++ N L LP L L+
Sbjct: 73 DGTLP--VLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
EL L N + + L L L +N L +P L L L + N T+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 295 ADGAF 299
G F
Sbjct: 188 PKGFF 192
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + T + L LNL L L ++ L L LDL N++ +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL- 92
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
+ L AL +L + N+L S+P + LG L EL + N TL G +L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 308 LDLRGAGLTNM 318
L L LT +
Sbjct: 153 LSLANNNLTEL 163
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L +DLSHNQL ++P+ G + L L ++ N+L+S+ GL L+ L L+GN L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
LP L P LE+L L N ++ + GL L L L +N L ++P F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
LS N L + P +L +L L+ +L+ + + L L L+L N L+ LP
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP-L 94
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
L L L LD+ NR++ + GL L+ LYL N+L+++P L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLR 311
+ N T L G NGL L L L+
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQ 180
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPI 176
L V C + NL +P L L L N + T + + Y+ L ++L +L + +
Sbjct: 13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
G P L L L+HN+L S+ +G L +L VL++ N L LP L L+
Sbjct: 73 DGTLP--VLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
EL L N + + L L L +N L +P L L L + N T+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 295 ADGAF 299
G F
Sbjct: 188 PKGFF 192
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + T + L LNL L L ++ L L LDL N++ +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL- 92
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
+ L AL +L + N+L S+P + LG L EL + N TL G +L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 308 LDLRGAGLTNM 318
L L LT +
Sbjct: 153 LSLANNNLTEL 163
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L +DLSHNQL ++P+ G + L L ++ N+L+S+ GL L+ L L+GN L+
Sbjct: 80 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 271
LP L P LE+L L N ++ + GL L L L +N L ++P
Sbjct: 139 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 189
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
LS N L + P +L +L L+ +L+ + + L L L+L N L+ LP
Sbjct: 39 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP-L 95
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
L L L LD+ NR++ + GL L+ LYL N+L+++P L +L
Sbjct: 96 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 155
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLR 311
+ N T L G NGL L L L+
Sbjct: 156 LANNNLTELPAGLLNGLENLDTLLLQ 181
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVNIPI 176
L V C + NL +P L L L N + T A + Y+ L ++L +L + +
Sbjct: 14 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 73
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
G P L L L+HN+L S+ +G L +L VL++ N L LP L L+
Sbjct: 74 DGTLP--VLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 128
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
EL L N + + L L L +N L +P L L L + N T+
Sbjct: 129 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 188
Query: 295 ADGAF 299
G F
Sbjct: 189 PKGFF 193
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + T + L LNL L L ++ L L LDL N++ +
Sbjct: 37 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL- 93
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
+ L AL +L + N+L S+P + LG L EL + N TL G +L
Sbjct: 94 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 153
Query: 308 LDLRGAGLTNM 318
L L LT +
Sbjct: 154 LSLANNNLTEL 164
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L +DLSHNQL ++P+ G + L L ++ N+L+S+ GL L+ L L+GN L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
LP L P LE+L L N ++ + GL L L L +N L ++P F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
LS N L + P +L +L L+ +L+ + + L L L+L N L+ LP
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP-L 94
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
L L L LD+ NR++ + GL L+ LYL N+L+++P L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLR 311
+ N T L G NGL L L L+
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQ 180
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPI 176
L V C + NL +P L L L N + T + + Y+ L ++L +L + +
Sbjct: 13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
G P L L L+HN+L S+ +G L +L VL++ N L LP L L+
Sbjct: 73 DGTLPV--LGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
EL L N + + L L L +N L +P L L L + N T+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 295 ADGAF 299
G F
Sbjct: 188 PKGFF 192
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + T + L LNL L L ++ L L LDL N++ +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL- 92
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
+ L AL +L + N+L S+P + LG L EL + N TL G +L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 308 LDLRGAGLTNM 318
L L LT +
Sbjct: 153 LSLANNNLTEL 163
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L +DLSHNQL ++P+ G + L L ++ N+L+S+ GL L+ L L+GN L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
LP L P LE+L L N ++ + GL L L L +N L ++P F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
LS N L + P +L +L L+ +L+ + + L L L+L N L+ LP
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP-L 94
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
L L L LD+ NR++ + GL L+ LYL N+L+++P L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLR 311
+ N T L G NGL L L L+
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQ 180
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPI 176
L V C + NL +P L L L N + T + + Y+ L ++L +L + +
Sbjct: 13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
G P L L L+HN+L S+ +G L +L VL++ N L LP L L+
Sbjct: 73 DGTLPV--LGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
EL L N + + L L L +N L +P L L L + N T+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 295 ADGAF 299
G F
Sbjct: 188 PKGFF 192
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + T + L LNL L L ++ L L LDL N++ +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL- 92
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
+ L AL +L + N+L S+P + LG L EL + N TL G +L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 308 LDLRGAGLTNM 318
L L LT +
Sbjct: 153 LSLANNNLTEL 163
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 95/192 (49%), Gaps = 16/192 (8%)
Query: 135 NPSIQRLVLKYNRI-KTVDSAIQF--YSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191
N SIQ L L N++ T +S +++L +DLS+N L ++ F L L L
Sbjct: 221 NTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLE 280
Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLE---------DLPDRLFAPLSHLEELDLGQNR 242
+N + ++ ++F GL +L+ L+L+ F + ++ D F L +LE L++ N
Sbjct: 281 YNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNN 340
Query: 243 ISRIDQACFEGLTALRILYLDD--NQLRSVPTPSFIYLGM--LAELRVGLNVFTTLADGA 298
I F GL +L+ L L L+++ +F+ L L L + N + +A+G
Sbjct: 341 IPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGT 400
Query: 299 FNGLGRLSALDL 310
F+ LG+L LDL
Sbjct: 401 FSWLGQLRILDL 412
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 94/234 (40%), Gaps = 56/234 (23%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
P ++ L L++N + + D F ++L +DL N + I F+ Q+ L++L L+HN
Sbjct: 73 PLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 195 LSSVNNKT--------------------------FIGLKSLKVLNLRGNFLEDLP----- 223
LSS T F+G SL+ L+L N L++
Sbjct: 133 LSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQ 192
Query: 224 --DRLFAPL-------SHLEE-------------LDLGQNRISRIDQACFEGL--TALRI 259
+LFA L HL E L L N++ ++ F GL T L
Sbjct: 193 TIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQ 252
Query: 260 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 313
L L N L V SF YL L L + N L+ +F GL L L L+ A
Sbjct: 253 LDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRA 306
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 123 KEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHV---DLSHNQLVNIPIRGF 179
K L L PS+QRL+L+ +K VD + + L+++ DLS+N + NI
Sbjct: 441 KYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLL 500
Query: 180 EPQEKLVELQLNHNKLSSVNNKT--------FIGLKSLKVLNLRGNFLEDLPDRLFAPLS 231
E E L L HN L+ + + GL L +LNL N L+++P +F L
Sbjct: 501 EGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLF 560
Query: 232 HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
L+ ++LG N +++++ F+ T+LR L L N + SV F
Sbjct: 561 ELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVF 604
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
++ VLNL N L LP F S L LD G N IS+++ + L L++L L N+L
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
+ +F++ L EL + N + F L LDL GL+
Sbjct: 86 SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 77/183 (42%), Gaps = 26/183 (14%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
S++ ++L+HNQL +P F +L L N +S + + L LKVLNL+ N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFI-- 276
L + D+ F ++L ELDL N I +I F+ L L L N L S + +
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQL 144
Query: 277 ----------------------YLG--MLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
+LG L +L + N + G F +G+L AL L
Sbjct: 145 ENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNN 204
Query: 313 AGL 315
A L
Sbjct: 205 AQL 207
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 98/227 (43%), Gaps = 47/227 (20%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSH---NQLV------NIPIRGFEPQEK 184
PS++ L L+YN I+ + S FY S+L+++ L Q V NI F+ +
Sbjct: 272 PSLRYLSLEYNNIQRL-SPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKY 330
Query: 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF--LEDLPDRLFAPLSH---------- 232
L L ++ N + S + TF GL SLK L+L F L+ L + F L+H
Sbjct: 331 LEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTK 390
Query: 233 ----------------LEELDLGQNRIS-RIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
L LDLG N I ++ + GL + +YL N+ + T SF
Sbjct: 391 NHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSF 450
Query: 276 IYLGMLAEL---RVGL-NVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
+ L L RV L NV ++ F L L+ LDL + N+
Sbjct: 451 ALVPSLQRLMLRRVALKNV--DISPSPFRPLRNLTILDLSNNNIANI 495
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVN--NKTFIGLKSLKVLNLRGNFLED 221
+ LS+N+ + + F L L L L +V+ F L++L +L+L N + +
Sbjct: 435 IYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIAN 494
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQAC--------FEGLTALRILYLDDNQLRSVPTP 273
+ + L L +LE LD N ++R+ + +GL+ L IL L+ N L +P
Sbjct: 495 INEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVG 554
Query: 274 SF 275
F
Sbjct: 555 VF 556
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L +DLSHNQL ++P+ G + L L ++ N+L+S+ GL L+ L L+GN L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
LP L P LE+L L N ++ + GL L L L +N L ++P F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
LS N L + P +L +L L+ +L+ + + L L L+L N L+ LP
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP-L 94
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
L L L LD+ NR++ + GL L+ LYL N+L+++P L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLR 311
+ N T L G NGL L L L+
Sbjct: 155 LANNDLTELPAGLLNGLENLDTLLLQ 180
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPI 176
L V C + +L +P L L L N + T + + Y+ L ++L +L + +
Sbjct: 13 LEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
G P L L L+HN+L S+ +G L +L VL++ N L LP L L+
Sbjct: 73 DGTLP--VLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
EL L N + + L L L +N L +P L L L + N T+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 295 ADGAF 299
G F
Sbjct: 188 PKGFF 192
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + T + L LNL L L ++ L L LDL N++ +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL- 92
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
+ L AL +L + N+L S+P + LG L EL + N TL G +L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 308 LDLRGAGLTNM 318
L L LT +
Sbjct: 153 LSLANNDLTEL 163
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 63/138 (45%), Gaps = 6/138 (4%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHV-- 164
CP C C E V C L IP + L+L N + + S+ + L H+
Sbjct: 2 CPAMCHC--EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRI-SSDGLFGRLPHLVK 58
Query: 165 -DLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
+L NQL I FE + ELQL NK+ ++NK F+GL LK LNL N + +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 224 DRLFAPLSHLEELDLGQN 241
F L+ L L+L N
Sbjct: 119 PGSFEHLNSLTSLNLASN 136
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 186 VELQLNHNKLSSVNNKTFIG-LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
EL LN N+L +++ G L L L L+ N L + F SH++EL LG+N+I
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 245 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
I F GL L+ L L DNQ+ V SF +L L L + N F
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%)
Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
D LF L HL +L+L +N+++ I+ FEG + ++ L L +N+++ + F+ L L
Sbjct: 47 DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106
Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDL 310
L + N + + G+F L L++L+L
Sbjct: 107 LNLYDNQISCVMPGSFEHLNSLTSLNL 133
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 28/167 (16%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
CP +C C +++C + L +P +L PS Y++L +DL
Sbjct: 12 CPANCLCASN--ILSCSKQQLPNVPQSL-PS--------------------YTAL--LDL 46
Query: 167 SHNQLVNIPIRGFEPQE--KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
SHN L + + P L L L+HN L+ ++++ F+ + +L+ L+L N L L +
Sbjct: 47 SHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105
Query: 225 RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 271
LF+ L LE L L N I +D+ FE + L+ LYL NQ+ P
Sbjct: 106 FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 188 LQLNHNKLSSVNNK-TFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
L L+HN LS + + T L +L L L N L + F P+ +L LDL N + +
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 247 DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT-----LADGAFNG 301
D+ F L AL +L L +N + V +F + L +L + N + + DG N
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG--NK 161
Query: 302 LGRLSALDLRGAGLTNM 318
L +L LDL L +
Sbjct: 162 LPKLMLLDLSSNKLKKL 178
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 17/224 (7%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVD 165
CP C C+ VV C + L+ +P L P L L+ N+I + D + +L +
Sbjct: 25 CPFRCQCH--LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
L +N++ I F P KL L L+ N+L + K K+L+ L + N + +
Sbjct: 83 LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTLQELRVHENEITKVRKS 139
Query: 226 LFAPLSHLEELDLGQN--RISRIDQACFEGLTALRILYLDDNQLRSVPT---PSFIYLGM 280
+F L+ + ++LG N + S I+ F+G+ L + + D + ++P PS
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS------ 193
Query: 281 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA 324
L EL + N T + + GL L+ L L ++ + S+A
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 152 DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKV 211
+ A Q L ++ ++ + IP +G P L EL L+ NK++ V+ + GL +L
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIP-QGLPPS--LTELHLDGNKITKVDAASLKGLNNLAK 220
Query: 212 LNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 271
L L N + + + A HL EL L N++ ++ + ++++YL +N + ++
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVYLHNNNISAIG 279
Query: 272 TPSFIYLG 279
+ F G
Sbjct: 280 SNDFCPPG 287
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 124 EANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVNIPIRGFEPQ 182
+ N+ IP L PS+ L L N+I VD+A ++ ++L + LS N + +
Sbjct: 180 DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239
Query: 183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP 229
L EL LN+NKL V K ++V+ L N + + F P
Sbjct: 240 PHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCP 285
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 17/224 (7%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVD 165
CP C C+ VV C + L+ +P L P L L+ N+I + D + +L +
Sbjct: 25 CPFRCQCH--LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
L +N++ I F P KL L L+ N+L + K K+L+ L + N + +
Sbjct: 83 LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTLQELRVHENEITKVRKS 139
Query: 226 LFAPLSHLEELDLGQN--RISRIDQACFEGLTALRILYLDDNQLRSVPT---PSFIYLGM 280
+F L+ + ++LG N + S I+ F+G+ L + + D + ++P PS
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS------ 193
Query: 281 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA 324
L EL + N T + + GL L+ L L ++ + S+A
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 138 IQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEP--QEKLVELQLNHNKL 195
++RL L N++K + + +LQ + + N++ + F Q +VEL N K
Sbjct: 102 LERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
S + N F G+K L + + + +P L P S L EL L N+I+++D A +GL
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPS-LTELHLDGNKITKVDAASLKGLN 216
Query: 256 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 297
L L L N + +V S L EL + N + G
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 152 DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKV 211
+ A Q L ++ ++ + IP +G P L EL L+ NK++ V+ + GL +L
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIP-QGLPPS--LTELHLDGNKITKVDAASLKGLNNLAK 220
Query: 212 LNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 271
L L N + + + A HL EL L N++ ++ + ++++YL +N + ++
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVYLHNNNISAIG 279
Query: 272 TPSFIYLG 279
+ F G
Sbjct: 280 SNDFCPPG 287
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 124 EANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVNIPIRGFEPQ 182
+ N+ IP L PS+ L L N+I VD+A ++ ++L + LS N + +
Sbjct: 180 DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239
Query: 183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP 229
L EL LN+NKL V K ++V+ L N + + F P
Sbjct: 240 PHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCP 285
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 10/175 (5%)
Query: 122 CKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP-IRGFE 180
C +++ I S++ L L +N + T+ S L+H+D H+ L + F
Sbjct: 389 CSQSDFGTI------SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442
Query: 181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDL 238
L+ L ++H N F GL SL+VL + GN ++ LPD +F L +L LDL
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDL 501
Query: 239 GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
Q ++ ++ F L++L++L + N S+ T + L L L LN T
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 10/129 (7%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
P +Q L L I+T+ D A Q S L + L+ N + ++ + F L +L
Sbjct: 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
L+S+ N LK+LK LN+ N ++ LP+ F+ L++LE LDL N+I I C
Sbjct: 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI--YC-- 190
Query: 253 GLTALRILY 261
T LR+L+
Sbjct: 191 --TDLRVLH 197
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + +F L+VL+L ++ + D + LSHL L L N I +
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
F GL++L+ L + L S+ +L L EL V N+ + F+ L L
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176
Query: 307 ALDL 310
LDL
Sbjct: 177 HLDL 180
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
+PD L P S + LDL N + + F L++L L +++++ ++ L L
Sbjct: 46 IPDNL--PFS-TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 102
Query: 282 AELRVGLNVFTTLADGAFNGLG---RLSALDLRGAGLTNM-MGHSMALGD 327
+ L + N +LA GAF+GL +L A++ A L N +GH L +
Sbjct: 103 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 73/195 (37%), Gaps = 52/195 (26%)
Query: 119 VVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRG 178
+V CK + + S++RL N+ S + SL+ +DLS N L +G
Sbjct: 335 LVNCKFGQFPTLKL---KSLKRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGL---SFKG 387
Query: 179 FEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDL 238
Q + L + LS F G V+ + NFL L LE LD
Sbjct: 388 CCSQSDFGTISLKYLDLS------FNG-----VITMSSNFL---------GLEQLEHLDF 427
Query: 239 GQNRISRIDQACFEGLTALR-ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 297
+ + ++ + F +LR ++YLD + + RV N G
Sbjct: 428 QHSNLKQMSE--FSVFLSLRNLIYLDISHTHT---------------RVAFN-------G 463
Query: 298 AFNGLGRLSALDLRG 312
FNGL L L + G
Sbjct: 464 IFNGLSSLEVLKMAG 478
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 4/160 (2%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP-IRGFEPQEKLVELQLNHNKL 195
S++ L L +N + T+ S L+H+D H+ L + F L+ L ++H
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
N F GL SL+VL + GN ++ LPD +F L +L LDL Q ++ ++ F
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
L++L++L + N S+ T + L L L LN T
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 10/129 (7%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
P +Q L L I+T+ D A Q S L + L+ N + ++ + F L +L
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
L+S+ N LK+LK LN+ N ++ LP+ F+ L++LE LDL N+I I C
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI--YC-- 166
Query: 253 GLTALRILY 261
T LR+L+
Sbjct: 167 --TDLRVLH 173
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + +F L+VL+L ++ + D + LSHL L L N I +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
F GL++L+ L + L S+ +L L EL V N+ + F+ L L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 307 ALDL 310
LDL
Sbjct: 153 HLDL 156
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
+PD L P S + LDL N + + F L++L L +++++ ++ L L
Sbjct: 22 IPDNL--PFS-TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 282 AELRVGLNVFTTLADGAFNGLG---RLSALDLRGAGLTNM-MGHSMALGD 327
+ L + N +LA GAF+GL +L A++ A L N +GH L +
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 26/133 (19%)
Query: 181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ 240
P + ++L N +++ G SLK L+L N + + F L LE LD
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQH 405
Query: 241 NRISRIDQACFEGLTALR-ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 299
+ + ++ + F +LR ++YLD + + RV N G F
Sbjct: 406 SNLKQMSE--FSVFLSLRNLIYLDISHTHT---------------RVAFN-------GIF 441
Query: 300 NGLGRLSALDLRG 312
NGL L L + G
Sbjct: 442 NGLSSLEVLKMAG 454
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 4/160 (2%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP-IRGFEPQEKLVELQLNHNKL 195
S++ L L +N + T+ S L+H+D H+ L + F L+ L ++H
Sbjct: 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
N F GL SL+VL + GN ++ LPD +F L +L LDL Q ++ ++ F
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNS 197
Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
L++L++L + N S+ T + L L L LN T
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 81/209 (38%), Gaps = 53/209 (25%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
CP C C+ + C L +P + S RL L+ N++++
Sbjct: 1 CPSRCSCSGTE--IRCNSKGLTSVPTGIPSSATRLELESNKLQS---------------- 42
Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLS--SVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
+P F+ +L +L L+ N LS +++ G SLK L+L N + +
Sbjct: 43 -------LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 95
Query: 225 RLFAPLSHLEELDLGQNRISRIDQACFEGLTALR-ILYLDDNQLRSVPTPSFIYLGMLAE 283
F L LE LD + + ++ + F +LR ++YLD + +
Sbjct: 96 N-FLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHT-------------- 138
Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDLRG 312
RV N G FNGL L L + G
Sbjct: 139 -RVAFN-------GIFNGLSSLEVLKMAG 159
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 104/283 (36%), Gaps = 91/283 (32%)
Query: 104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPS------------------------IQ 139
SA CP C C+ VV C + L +P ++P +
Sbjct: 24 SAMCPFGCHCH--LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLY 81
Query: 140 RLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQ--EKLVELQLNHNKLS 196
LVL N+I + + A LQ + +S N LV IP P LVEL+++ N++
Sbjct: 82 ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP-----PNLPSSLVELRIHDNRIR 136
Query: 197 SVNNKTFIGLKSLKVLNLRGNFLE-----------------------------DLPDRL- 226
V F GL+++ + + GN LE DLP+ L
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN 196
Query: 227 ----------------FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSV 270
S L L LG N+I I+ L LR L+LD+N+L V
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256
Query: 271 PTP-------SFIYLGMLAELRVGLNVFTTLADGA----FNGL 302
P +YL +VG+N F + G +NG+
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 211 VLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSV 270
+L+L+ N + +L F L HL L L N+IS+I + F L L+ LY+ N L +
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Query: 271 PT--PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
P PS L ELR+ N + G F+GL ++ +++ G L N
Sbjct: 118 PPNLPS-----SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 9/163 (5%)
Query: 158 YSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
+ L+ V S L +P + P L++LQ +N +S + F GL+ L L L N
Sbjct: 32 HCHLRVVQCSDLGLKAVP-KEISPDTTLLDLQ--NNDISELRKDDFKGLQHLYALVLVNN 88
Query: 218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY 277
+ + ++ F+PL L++L + +N + I L LRI DN++R VP F
Sbjct: 89 KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRI---HDNRIRKVPKGVFSG 145
Query: 278 LGMLAELRVGLNVF--TTLADGAFNGLGRLSALDLRGAGLTNM 318
L + + +G N + GAF+GL +L+ L + A LT +
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 192 HNKLSSVNNKTFIGLKS--LKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQA 249
H +N TF GL++ +K +L + + L +F+ + LE+L L QN I++ID
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317
Query: 250 CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
F GLT L+ L LD NQL+SVP F L L ++ + N
Sbjct: 318 AFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 231 SHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSV-PTPSFIYLGMLAELRVGLN 289
+H+ +DL N I+ +++ F L L+ L ++ V +F L L L++ N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 290 VFTTLADGAFNGLGRLSALDLRGAGL 315
F L GAFNGL L L L L
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNL 115
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 11/151 (7%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHV---DLSHNQLVNIPIRGFEPQEKLVELQLNH 192
PS+QRL+L+ +K VDS+ + L+++ DLS+N + NI E EKL L L H
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513
Query: 193 NKLSSVNNKT--------FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
N L+ + GL L +LNL N +++P +F L L+ +DLG N ++
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573
Query: 245 RIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
+ + F +L+ L L N + SV F
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 3/206 (1%)
Query: 113 CNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQL 171
C V C L +P L +I L L +N+++ + +A YS L +D+ N +
Sbjct: 2 CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 172 VNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS 231
+ + L L L HN+LS +++KTF +L L+L N ++ + + F
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 232 HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG--MLAELRVGLN 289
+L LDL N +S L L+ L L +N+++++ + L +L + N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 290 VFTTLADGAFNGLGRLSALDLRGAGL 315
+ G F+ +GRL L L L
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQL 207
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
++ VLNL N L LP F S L LD+G N IS+++ + L L++L L N+L
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
+ +F + L EL + N + + F L LDL GL+
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 16/192 (8%)
Query: 135 NPSIQRLVLKYNRIKTVDSAIQF---YSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191
N SI+ L L +++ T + +++L +DLS+N L + F +L L
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280
Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGNF------LEDLP---DRLFAPLSHLEELDLGQNR 242
+N + + + + GL +++ LNL+ +F L LP D F L LE L++ N
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340
Query: 243 ISRIDQACFEGLTALRILYLDDN--QLRSVPTPSFIYLGM--LAELRVGLNVFTTLADGA 298
I I F GL L+ L L ++ LR++ +F+ L L L + N + + A
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400
Query: 299 FNGLGRLSALDL 310
F+ LG L LDL
Sbjct: 401 FSWLGHLEVLDL 412
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 9/170 (5%)
Query: 149 KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN--KLSSVNNKTFIGL 206
K D + Q+ L+H+++ N + I F L L L+++ L ++ N+TF+ L
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378
Query: 207 KS--LKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR-IDQACFEGLTALRILYLD 263
L +LNL N + + F+ L HLE LDLG N I + + + GL + +YL
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438
Query: 264 DNQLRSVPTPSFIYLGMLAEL---RVGLNVFTTLADGAFNGLGRLSALDL 310
N+ + SF + L L RV L + + F L L+ LDL
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS-SPSPFQPLRNLTILDL 487
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKT--FIGLKSLKVLNLRGNFLED 221
+ LS+N+ + + F L L L L +V++ F L++L +L+L N + +
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQAC--------FEGLTALRILYLDDNQLRSVPTP 273
+ D + L LE LDL N ++R+ + +GL+ L IL L+ N +P
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554
Query: 274 SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
F L L + +GLN TL FN L +L+L+ +T++
Sbjct: 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 155 IQFYSSLQHV---DLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKV 211
I F L H+ +L N IP+ F+ +L + L N L+++ F SLK
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588
Query: 212 LNLRGNFLEDLPDRLFAP-LSHLEELDLGQNRISRIDQAC 250
LNL+ N + + ++F P +L ELD+ R + D C
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDM---RFNPFDCTC 625
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 11/151 (7%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHV---DLSHNQLVNIPIRGFEPQEKLVELQLNH 192
PS+QRL+L+ +K VDS+ + L+++ DLS+N + NI E EKL L L H
Sbjct: 464 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 523
Query: 193 NKLSSVNNKT--------FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
N L+ + GL L +LNL N +++P +F L L+ +DLG N ++
Sbjct: 524 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 583
Query: 245 RIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
+ + F +L+ L L N + SV F
Sbjct: 584 TLPASVFNNQVSLKSLNLQKNLITSVEKKVF 614
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 5/216 (2%)
Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSL 161
SA C + E V C L +P L +I L L +N+++ + +A YS L
Sbjct: 4 GSASSTTKCTVSHE--VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQL 61
Query: 162 QHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED 221
+D+ N + + + L L L HN+LS +++KTF +L L+L N ++
Sbjct: 62 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 121
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG-- 279
+ + F +L LDL N +S L L+ L L +N+++++ +
Sbjct: 122 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 181
Query: 280 MLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315
L +L + N + G F+ +GRL L L L
Sbjct: 182 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 217
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
++ VLNL N L LP F S L LD+G N IS+++ + L L++L L N+L
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
+ +F + L EL + N + + F L LDL GL+
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 16/192 (8%)
Query: 135 NPSIQRLVLKYNRIKTVDSAIQF---YSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191
N SI+ L L +++ T + +++L +DLS+N L + F +L L
Sbjct: 231 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 290
Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGNF------LEDLP---DRLFAPLSHLEELDLGQNR 242
+N + + + + GL +++ LNL+ +F L LP D F L LE L++ N
Sbjct: 291 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 350
Query: 243 ISRIDQACFEGLTALRILYLDDN--QLRSVPTPSFIYLGM--LAELRVGLNVFTTLADGA 298
I I F GL L+ L L ++ LR++ +F+ L L L + N + + A
Sbjct: 351 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 410
Query: 299 FNGLGRLSALDL 310
F+ LG L LDL
Sbjct: 411 FSWLGHLEVLDL 422
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 9/170 (5%)
Query: 149 KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN--KLSSVNNKTFIGL 206
K D + Q+ L+H+++ N + I F L L L+++ L ++ N+TF+ L
Sbjct: 329 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 388
Query: 207 KS--LKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR-IDQACFEGLTALRILYLD 263
L +LNL N + + F+ L HLE LDLG N I + + + GL + +YL
Sbjct: 389 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 448
Query: 264 DNQLRSVPTPSFIYLGMLAEL---RVGLNVFTTLADGAFNGLGRLSALDL 310
N+ + SF + L L RV L + + F L L+ LDL
Sbjct: 449 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS-SPSPFQPLRNLTILDL 497
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKT--FIGLKSLKVLNLRGNFLED 221
+ LS+N+ + + F L L L L +V++ F L++L +L+L N + +
Sbjct: 445 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 504
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQAC--------FEGLTALRILYLDDNQLRSVPTP 273
+ D + L LE LDL N ++R+ + +GL+ L IL L+ N +P
Sbjct: 505 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 564
Query: 274 SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
F L L + +GLN TL FN L +L+L+ +T++
Sbjct: 565 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 609
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 155 IQFYSSLQHV---DLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKV 211
I F L H+ +L N IP+ F+ +L + L N L+++ F SLK
Sbjct: 539 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 598
Query: 212 LNLRGNFLEDLPDRLFAP-LSHLEELDLGQNRISRIDQAC 250
LNL+ N + + ++F P +L ELD+ R + D C
Sbjct: 599 LNLQKNLITSVEKKVFGPAFRNLTELDM---RFNPFDCTC 635
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%)
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 314
T + +L L NQLR +P +F L L VG N + L L L L+L+
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 315 LTNMMGHSMAL 325
L+ + + A
Sbjct: 95 LSQLSDKTFAF 105
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 11/151 (7%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHV---DLSHNQLVNIPIRGFEPQEKLVELQLNH 192
PS+QRL+L+ +K VDS+ + L+++ DLS+N + NI E EKL L L H
Sbjct: 459 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 518
Query: 193 NKLSSVNNKT--------FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
N L+ + GL L +LNL N +++P +F L L+ +DLG N ++
Sbjct: 519 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 578
Query: 245 RIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
+ + F +L+ L L N + SV F
Sbjct: 579 TLPASVFNNQVSLKSLNLQKNLITSVEKKVF 609
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 3/206 (1%)
Query: 113 CNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQL 171
C V C L +P L +I L L +N+++ + +A YS L +D+ N +
Sbjct: 7 CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 66
Query: 172 VNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS 231
+ + L L L HN+LS +++KTF +L L+L N ++ + + F
Sbjct: 67 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 126
Query: 232 HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG--MLAELRVGLN 289
+L LDL N +S L L+ L L +N+++++ + L +L + N
Sbjct: 127 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 186
Query: 290 VFTTLADGAFNGLGRLSALDLRGAGL 315
+ G F+ +GRL L L L
Sbjct: 187 QIKEFSPGCFHAIGRLFGLFLNNVQL 212
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
++ VLNL N L LP F S L LD+G N IS+++ + L L++L L N+L
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
+ +F + L EL + N + + F L LDL GL+
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 16/192 (8%)
Query: 135 NPSIQRLVLKYNRIKTVDSAIQF---YSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191
N SI+ L L +++ T + +++L +DLS+N L + F +L L
Sbjct: 226 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 285
Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGNF------LEDLP---DRLFAPLSHLEELDLGQNR 242
+N + + + + GL +++ LNL+ +F L LP D F L LE L++ N
Sbjct: 286 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 345
Query: 243 ISRIDQACFEGLTALRILYLDDN--QLRSVPTPSFIYLGM--LAELRVGLNVFTTLADGA 298
I I F GL L+ L L ++ LR++ +F+ L L L + N + + A
Sbjct: 346 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 405
Query: 299 FNGLGRLSALDL 310
F+ LG L LDL
Sbjct: 406 FSWLGHLEVLDL 417
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 9/170 (5%)
Query: 149 KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN--KLSSVNNKTFIGL 206
K D + Q+ L+H+++ N + I F L L L+++ L ++ N+TF+ L
Sbjct: 324 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 383
Query: 207 KS--LKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR-IDQACFEGLTALRILYLD 263
L +LNL N + + F+ L HLE LDLG N I + + + GL + +YL
Sbjct: 384 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 443
Query: 264 DNQLRSVPTPSFIYLGMLAEL---RVGLNVFTTLADGAFNGLGRLSALDL 310
N+ + SF + L L RV L + + F L L+ LDL
Sbjct: 444 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS-SPSPFQPLRNLTILDL 492
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKT--FIGLKSLKVLNLRGNFLED 221
+ LS+N+ + + F L L L L +V++ F L++L +L+L N + +
Sbjct: 440 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 499
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQAC--------FEGLTALRILYLDDNQLRSVPTP 273
+ D + L LE LDL N ++R+ + +GL+ L IL L+ N +P
Sbjct: 500 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 559
Query: 274 SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
F L L + +GLN TL FN L +L+L+ +T++
Sbjct: 560 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 604
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 155 IQFYSSLQHV---DLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKV 211
I F L H+ +L N IP+ F+ +L + L N L+++ F SLK
Sbjct: 534 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 593
Query: 212 LNLRGNFLEDLPDRLFAP-LSHLEELDLGQNRISRIDQAC 250
LNL+ N + + ++F P +L ELD+ R + D C
Sbjct: 594 LNLQKNLITSVEKKVFGPAFRNLTELDM---RFNPFDCTC 630
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAI-QFYSSLQ 162
SA CP C C+ T V C+E +L +P + + Q L L N+I ++ + + L
Sbjct: 10 SAACPSQCSCSGTT--VNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLT 67
Query: 163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
+++L+ NQL +P+ F+ KL L L+ N+L S+ F LKSL + L N
Sbjct: 68 YLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 234 EELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
+ L L N+I++++ F+ LT L L L NQL ++P F L L L + +N +
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 294 LADGAFNGLGRLSALDL 310
+ G F+ L L+ + L
Sbjct: 103 IPMGVFDNLKSLTHIYL 119
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
+ +VL+L N + L +F L+ L L+L N+++ + F+ LT L L L NQL
Sbjct: 41 TTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL 100
Query: 268 RSVPTPSFIYLGMLAEL 284
+S+P F L L +
Sbjct: 101 KSIPMGVFDNLKSLTHI 117
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 311
T ++L+L NQ+ + F L L L + +N T L G F+ L +L+ L L
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALH 96
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAI-QFYSSLQHVD 165
CP C C+ T V C +L +P + + Q L L NRI ++ + + L +D
Sbjct: 3 CPSQCSCSGTT--VDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLD 60
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
L +NQL +P F+ +L +L LN N+L S+ F L+SL + L N
Sbjct: 61 LDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
+ +VL L N + L +F L+ L LDL N+++ + F+ LT L L L+DNQL
Sbjct: 31 TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 268 RSVPTPSFIYLGMLAEL 284
+S+P +F L L +
Sbjct: 91 KSIPRGAFDNLRSLTHI 107
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 234 EELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
+ L L NRI++++ F+ LT L L LD+NQL +P F L L +L + N +
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 294 LADGAFNGLGRLS 306
+ GAF+ L L+
Sbjct: 93 IPRGAFDNLRSLT 105
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
T ++LYL DN++ + F L L L + N T L G F+ L +L+ L L
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 105 AFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAI-QFYSSLQH 163
+ CP C C+ T V C +L +P + + Q L L N+I ++ + + L
Sbjct: 9 SACPSQCSCSGTT--VDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTR 66
Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSL 209
+DL +NQL +P F+ +L +L LN N+L S+ F LKSL
Sbjct: 67 LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSL 112
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
+ +VL L N + L +F L+ L LDL N+++ + F+ LT L L L+DNQL
Sbjct: 39 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Query: 268 RSVPTPSFIYLGMLAEL 284
+S+P +F L L +
Sbjct: 99 KSIPRGAFDNLKSLTHI 115
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 241 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 300
N+I++++ F+ LT L L LD+NQL +P F L L +L + N ++ GAF+
Sbjct: 48 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 107
Query: 301 GLGRLS 306
L L+
Sbjct: 108 NLKSLT 113
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
T ++LYL DNQ+ + F L L L + N T L G F+ L +L+ L L
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 93
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAI-QFYSSLQHVD 165
CP C C+ T V C +L +P + + Q L L N+I ++ + + L +D
Sbjct: 3 CPSQCSCSGTT--VDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLD 60
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
L +NQL +P F+ +L +L LN N+L S+ F LKSL + L N
Sbjct: 61 LDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
+ +VL L N + L +F L+ L LDL N+++ + F+ LT L L L+DNQL
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 268 RSVPTPSFIYLGMLAEL 284
+S+P +F L L +
Sbjct: 91 KSIPRGAFDNLKSLTHI 107
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 241 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 300
N+I++++ F+ LT L L LD+NQL +P F L L +L + N ++ GAF+
Sbjct: 40 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99
Query: 301 GLGRLS 306
L L+
Sbjct: 100 NLKSLT 105
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
T ++LYL DNQ+ + F L L L + N T L G F+ L +L+ L L
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP-IRGFEPQEKLVELQLNHNKL 195
S++ L L +N + + LQH+D H+ L + F EKL+ L +++
Sbjct: 372 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 431
Query: 196 SSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
+ F+GL SL L + GN F ++ +FA ++L LDL + ++ +I F+ L
Sbjct: 432 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 491
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
L++L + N L + + + L L+ L N T
Sbjct: 492 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 530
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 98/247 (39%), Gaps = 63/247 (25%)
Query: 122 CKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFE 180
C + L +P + S + + L +N +K + S + +S LQ +DLS ++ I + +
Sbjct: 13 CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 72
Query: 181 PQEKLVELQLNHNKLSSVNNKTFIGLKSL------------------------KVLNLRG 216
L L L N + S + +F GL SL K LN+
Sbjct: 73 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 132
Query: 217 NFLED--LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ-LRSVPTP 273
NF+ LP F+ L++L +DL N I I ++D Q LR P
Sbjct: 133 NFIHSCKLP-AYFSNLTNLVHVDLSYNYIQTIT--------------VNDLQFLRENPQV 177
Query: 274 SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG---------AGLTNMMG---H 321
+ L + LN + D AF G+ +L L LRG L N+ G H
Sbjct: 178 NL-------SLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVH 229
Query: 322 SMALGDY 328
+ LG++
Sbjct: 230 RLILGEF 236
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 9/208 (4%)
Query: 115 DETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVN 173
D + V + + IP L +++ L L +N+I + ++ ++LQ + L +++
Sbjct: 31 DASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 90
Query: 174 IPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP-DRLFAPLSH 232
I F L L L+ N LSS+++ F L SLK LNL GN + L LF L++
Sbjct: 91 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 150
Query: 233 LEELDLGQ----NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 288
L+ L +G + I RID F GLT+L L + LR+ + S + + L + L
Sbjct: 151 LQTLRIGNVETFSEIRRID---FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 207
Query: 289 NVFTTLADGAFNGLGRLSALDLRGAGLT 316
+ L + + L + L+LR L
Sbjct: 208 SESAFLLEIFADILSSVRYLELRDTNLA 235
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 33/220 (15%)
Query: 138 IQRLVLKYNRIKTVDSAI-QFYSSLQHVDLSHNQLV-----NIPIRGFEPQEKLVELQLN 191
++R+ ++ +++ V + Q SL+ +DLS N +V N +G P + + L N
Sbjct: 338 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 397
Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF 251
H + + + LK+L L++ N +PD P + L+L I R+ + C
Sbjct: 398 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP-EKMRFLNLSSTGI-RVVKTCI 455
Query: 252 EG------------------LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
L L+ LY+ N+L+++P S +L +++ N +
Sbjct: 456 PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKIASNQLKS 513
Query: 294 LADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYL-HWI 332
+ DG F+ L L + L TN S DYL W+
Sbjct: 514 VPDGIFDRLTSLQKIWLH----TNPWDCSCPRIDYLSRWL 549
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP-IRGFEPQEKLVELQLNHNKL 195
S++ L L +N + + LQH+D H+ L + F EKL+ L +++
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436
Query: 196 SSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
+ F+GL SL L + GN F ++ +FA ++L LDL + ++ +I F+ L
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
L++L + N L + + + L L+ L N T
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 98/247 (39%), Gaps = 63/247 (25%)
Query: 122 CKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFE 180
C + L +P + S + + L +N +K + S + +S LQ +DLS ++ I + +
Sbjct: 18 CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77
Query: 181 PQEKLVELQLNHNKLSSVNNKTFIGLKSL------------------------KVLNLRG 216
L L L N + S + +F GL SL K LN+
Sbjct: 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137
Query: 217 NFLED--LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ-LRSVPTP 273
NF+ LP F+ L++L +DL N I I ++D Q LR P
Sbjct: 138 NFIHSCKLP-AYFSNLTNLVHVDLSYNYIQTIT--------------VNDLQFLRENPQV 182
Query: 274 SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG---------AGLTNMMG---H 321
+ L + LN + D AF G+ +L L LRG L N+ G H
Sbjct: 183 NL-------SLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234
Query: 322 SMALGDY 328
+ LG++
Sbjct: 235 RLILGEF 241
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 9/208 (4%)
Query: 115 DETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVN 173
D + V + + IP L +++ L L +N+I + ++ ++LQ + L +++
Sbjct: 5 DASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64
Query: 174 IPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP-DRLFAPLSH 232
I F L L L+ N LSS+++ F L SLK LNL GN + L LF L++
Sbjct: 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124
Query: 233 LEELDLGQ----NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 288
L+ L +G + I RID F GLT+L L + LR+ + S + + L + L
Sbjct: 125 LQTLRIGNVETFSEIRRID---FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181
Query: 289 NVFTTLADGAFNGLGRLSALDLRGAGLT 316
+ L + + L + L+LR L
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLA 209
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 33/220 (15%)
Query: 138 IQRLVLKYNRIKTVDSAI-QFYSSLQHVDLSHNQLV-----NIPIRGFEPQEKLVELQLN 191
++R+ ++ +++ V + Q SL+ +DLS N +V N +G P + + L N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371
Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF 251
H + + + LK+L L++ N +PD P + L+L I R+ + C
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP-EKMRFLNLSSTGI-RVVKTCI 429
Query: 252 EG------------------LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
L L+ LY+ N+L+++P S +L +++ N +
Sbjct: 430 PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKS 487
Query: 294 LADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYL-HWI 332
+ DG F+ L L + L TN S DYL W+
Sbjct: 488 VPDGIFDRLTSLQKIWLH----TNPWDCSCPRIDYLSRWL 523
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ +++RL + N++ + S + ++L+ + ++NQ+ +I G L E
Sbjct: 169 DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 225
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS---HLEELDLGQNRIS 244
L LN N+L + T L +L L+L N + +L APLS L EL LG N+IS
Sbjct: 226 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQIS 278
Query: 245 RIDQACFEGLTALRILYLDDNQLRSV 270
I + GLTAL L L++NQL +
Sbjct: 279 NI--SPLAGLTALTNLELNENQLEDI 302
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ +++RL + N++ + S + ++L+ + ++NQ+ +I G L E
Sbjct: 168 DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 224
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS---HLEELDLGQNRIS 244
L LN N+L + T L +L L+L N + +L APLS L EL LG N+IS
Sbjct: 225 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQIS 277
Query: 245 RIDQACFEGLTALRILYLDDNQLRSV 270
I + GLTAL L L++NQL +
Sbjct: 278 NI--SPLAGLTALTNLELNENQLEDI 301
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ +++RL + N++ + S + ++L+ + ++NQ+ +I G L E
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 220
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS---HLEELDLGQNRIS 244
L LN N+L + T L +L L+L N + +L APLS L EL LG N+IS
Sbjct: 221 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQIS 273
Query: 245 RIDQACFEGLTALRILYLDDNQLRSV 270
I + GLTAL L L++NQL +
Sbjct: 274 NI--SPLAGLTALTNLELNENQLEDI 297
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ +++RL + N++ + S + ++L+ + ++NQ+ +I G L E
Sbjct: 165 DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 221
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS---HLEELDLGQNRIS 244
L LN N+L + T L +L L+L N + +L APLS L EL LG N+IS
Sbjct: 222 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQIS 274
Query: 245 RIDQACFEGLTALRILYLDDNQLRSV 270
I + GLTAL L L++NQL +
Sbjct: 275 NI--SPLAGLTALTNLELNENQLEDI 298
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ +++RL + N++ + S + ++L+ + ++NQ+ +I G L E
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 220
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS---HLEELDLGQNRIS 244
L LN N+L + T L +L L+L N + +L APLS L EL LG N+IS
Sbjct: 221 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQIS 273
Query: 245 RIDQACFEGLTALRILYLDDNQLRSV 270
I + GLTAL L L++NQL +
Sbjct: 274 NI--SPLAGLTALTNLELNENQLEDI 297
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ +++RL + N++ + S + ++L+ + ++NQ+ +I G L E
Sbjct: 165 DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 221
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS---HLEELDLGQNRIS 244
L LN N+L + T L +L L+L N + +L APLS L EL LG N+IS
Sbjct: 222 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQIS 274
Query: 245 RIDQACFEGLTALRILYLDDNQLRSV 270
I + GLTAL L L++NQL +
Sbjct: 275 NI--SPLAGLTALTNLELNENQLEDI 298
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ +++RL + N++ + S + ++L+ + ++NQ+ +I G L E
Sbjct: 165 DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 221
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS---HLEELDLGQNRIS 244
L LN N+L + T L +L L+L N + +L APLS L EL LG N+IS
Sbjct: 222 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQIS 274
Query: 245 RIDQACFEGLTALRILYLDDNQLRSV 270
I + GLTAL L L++NQL +
Sbjct: 275 NI--SPLAGLTALTNLELNENQLEDI 298
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
S N +NI + + L + +L+ + +++L L LR N +E++P L
Sbjct: 107 SDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHL 165
Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 286
F L +LE ++ G N++ ++ + F + L+ L L NQL+SVP F L L ++ +
Sbjct: 166 FDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWL 225
Query: 287 GLNVF 291
N +
Sbjct: 226 HTNPW 230
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
+L+ ++ N+L +P F KL +L L N+L SV + F L SL+ + L N
Sbjct: 171 NLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 33/185 (17%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
P +Q L L I+T+ D A Q S L + L+ N + ++ + F L +L
Sbjct: 54 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 113
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRI------ 246
L+S+ N LK+LK LN+ N ++ LP+ F+ L++LE LDL N+I I
Sbjct: 114 LASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLR 172
Query: 247 ----------------------DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
F+ + L+ L LD NQL+SVP F L L ++
Sbjct: 173 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKI 231
Query: 285 RVGLN 289
+ N
Sbjct: 232 WLHTN 236
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + +F L+VL+L ++ + D + LSHL L L N I +
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
F GL++L+ L + L S+ +L L EL V N+ + F+ L L
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 307 ALDL 310
LDL
Sbjct: 155 HLDL 158
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
+PD L P S + LDL N + + F L++L L +++++ ++ L L
Sbjct: 24 IPDNL--PFS-TKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 80
Query: 282 AELRVGLNVFTTLADGAFNGLG---RLSALDLRGAGLTNM-MGHSMALGD 327
+ L + N +LA GAF+GL +L A++ A L N +GH L +
Sbjct: 81 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 130
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 33/185 (17%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
P +Q L L I+T+ D A Q S L + L+ N + ++ + F L +L
Sbjct: 53 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 112
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRI------ 246
L+S+ N LK+LK LN+ N ++ LP+ F+ L++LE LDL N+I I
Sbjct: 113 LASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLR 171
Query: 247 ----------------------DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
F+ + L+ L LD NQL+SVP F L L ++
Sbjct: 172 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKI 230
Query: 285 RVGLN 289
+ N
Sbjct: 231 WLHTN 235
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + +F L+VL+L ++ + D + LSHL L L N I +
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
F GL++L+ L + L S+ +L L EL V N+ + F+ L L
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 307 ALDL 310
LDL
Sbjct: 154 HLDL 157
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
+PD L P S + LDL N + + F L++L L +++++ ++ L L
Sbjct: 23 IPDNL--PFS-TKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 79
Query: 282 AELRVGLNVFTTLADGAFNGLG---RLSALDLRGAGLTNM-MGHSMALGD 327
+ L + N +LA GAF+GL +L A++ A L N +GH L +
Sbjct: 80 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 129
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + +F L+VL+L ++ + D + LSHL L L N I +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
F GL++L+ L + L S+ +L L EL V N+ + F+ L L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 307 ALDL 310
LDL
Sbjct: 153 HLDL 156
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 33/185 (17%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
P +Q L L I+T+ D A Q S L + L+ N + ++ + F L +L
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRI------ 246
L+S+ N LK+LK LN+ N ++ LP+ F+ L++LE LDL N+I I
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLR 170
Query: 247 ----------------------DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
F+ + L+ L LD NQL+SVP F L L ++
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKI 229
Query: 285 RVGLN 289
+ N
Sbjct: 230 WLHTN 234
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
+PD L P S + LDL N + + F L++L L +++++ ++ L L
Sbjct: 22 IPDNL--PFS-TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 282 AELRVGLNVFTTLADGAFNGLG---RLSALDLRGAGLTNM-MGHSMALGD 327
+ L + N +LA GAF+GL +L A++ A L N +GH L +
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + +F L+VL+L ++ + D + LSHL L L N I +
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
F GL++L+ L + L S+ +L L EL V N+ + F+ L L
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 307 ALDL 310
LDL
Sbjct: 154 HLDL 157
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 33/185 (17%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
P +Q L L I+T+ D A Q S L + L+ N + ++ + F L +L
Sbjct: 53 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 112
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRI------ 246
L+S+ N LK+LK LN+ N ++ LP+ F+ L++LE LDL N+I I
Sbjct: 113 LASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLR 171
Query: 247 ----------------------DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
F+ + L+ L LD NQL+SVP F L L ++
Sbjct: 172 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKI 230
Query: 285 RVGLN 289
+ N
Sbjct: 231 WLHTN 235
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
+PD L P S + LDL N + + F L++L L +++++ ++ L L
Sbjct: 23 IPDNL--PFS-TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 79
Query: 282 AELRVGLNVFTTLADGAFNGLG---RLSALDLRGAGLTNM-MGHSMALGD 327
+ L + N +LA GAF+GL +L A++ A L N +GH L +
Sbjct: 80 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 129
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 85/188 (45%), Gaps = 39/188 (20%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPI---RGFEPQEKLVELQLN 191
P +Q L L I+T+ D A Q S L + L+ N + ++ + G +KLV L+ N
Sbjct: 54 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETN 113
Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRI--- 246
L+S+ N LK+LK LN+ N ++ LP+ F+ L++LE LDL N+I I
Sbjct: 114 ---LASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCT 169
Query: 247 -------------------------DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
F+ + L+ L LD NQL+SVP F L L
Sbjct: 170 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSL 228
Query: 282 AELRVGLN 289
++ + N
Sbjct: 229 QKIWLHTN 236
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L+ N L + + +F L+VL+L ++ + D + LSHL L L N I +
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLS 306
F GL++L+ L + L S+ +L L EL V N+ + F+ L L
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 307 ALDL 310
LDL
Sbjct: 155 HLDL 158
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
+PD L P S + LDL N + + F L++L L +++++ ++ L L
Sbjct: 24 IPDNL--PFS-TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 80
Query: 282 AELRVGLNVFTTLADGAFNGLG---RLSALDLRGAGLTNM-MGHSMALGD 327
+ L + N +LA GAF+GL +L AL+ A L N +GH L +
Sbjct: 81 STLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKE 130
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFL 219
+++ +DLS+N++ I + L L L N ++++ +F L SL+ L+L N+L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 220 EDLPDRLFAPLSHLEELDLGQNRISRI-DQACFEGLTALRILYLDD-NQLRSVPTPSFIY 277
+L F PLS L L+L N + + + F LT L+IL + + + + F
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172
Query: 278 LGMLAELRV 286
L L EL +
Sbjct: 173 LTFLEELEI 181
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 233 LEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
++ LDL NRI+ I + + L+ L L N + ++ SF LG L L + N +
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 293 TLADGAFNGLGRLSALDLRGA-----GLTNMMGH 321
L+ F L L+ L+L G G T++ H
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 24/157 (15%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFL 219
+++ +DLS+N++ I + L L L N ++++ +F L SL+ L+L N+L
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 220 EDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG 279
+L F PLS L L+L N + G T+L F +L
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLGNPYKTL------GETSL-----------------FSHLT 123
Query: 280 MLAELRVG-LNVFTTLADGAFNGLGRLSALDLRGAGL 315
L LRVG ++ FT + F GL L L++ + L
Sbjct: 124 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 160
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 233 LEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
++ LDL NRI+ I + + L+ L L N + ++ SF LG L L + N +
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 293 TLADGAFNGLGRLSALDLRGA-----GLTNMMGH 321
L+ F L L+ L+L G G T++ H
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 121
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQH---VDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
PS+Q L+L+ N + +++ + +L++ +D+S N ++P P EK+ L L+
Sbjct: 361 PSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWP-EKMKYLNLSS 419
Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
++ SV T K+L++L++ N L L L+EL + +N++ + A
Sbjct: 420 TRIHSV---TGCIPKTLEILDVSNNNLN----LFSLNLPQLKELYISRNKLMTLPDASL- 471
Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
L L +L + NQL+SVP F L L ++ + N
Sbjct: 472 -LPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 25/138 (18%)
Query: 104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQH 163
SA CP C C D+TLV C+ L +P + QRL L N+I ++ +
Sbjct: 3 SAGCPSQCSC-DQTLV-NCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGV-------- 52
Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
+ LVN L +L N NKL+++ F L L L+L N L+ +P
Sbjct: 53 ----FDHLVN-----------LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 224 DRLFAPLSHLEELDLGQN 241
F L L + L N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 234 EELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
+ L L N+I++++ F+ L L+ LY + N+L ++PT F L L +L + N +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 294 LADGAFNGLGRLSALDL 310
+ GAF+ L L+ + L
Sbjct: 96 IPRGAFDNLKSLTHIYL 112
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
L LN+N+++ + F L +L+ L N L +P +F L+ L +LDL N + I
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 247 DQACFEGLTALRILYLDDN 265
+ F+ L +L +YL +N
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 214 LRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP 273
L N + L +F L +L++L N+++ I F+ LT L L L+DN L+S+P
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
Query: 274 SFIYLGMLAEL 284
+F L L +
Sbjct: 100 AFDNLKSLTHI 110
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 30/126 (23%)
Query: 153 SAIQFYSSLQHVDLSHNQLVNI-PIRGFEPQEKLVELQLNHNKLSSVNN----------- 200
+ +QF+++L+ + LSHNQ+ ++ P++ KL EL +N N+L ++N
Sbjct: 57 AGMQFFTNLKELHLSHNQISDLSPLKDL---TKLEELSVNRNRLKNLNGIPSACLSRLFL 113
Query: 201 --------KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
+ I LK+L++L++R N L+ + + LS LE LDL N I+
Sbjct: 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNTG----- 166
Query: 253 GLTALR 258
GLT L+
Sbjct: 167 GLTRLK 172
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID---QACFEGLTALRILYLDD 264
+LK L+L N + DL L+ LEEL + +NR+ ++ AC L L+LD+
Sbjct: 64 NLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSAC------LSRLFLDN 115
Query: 265 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMG 320
N+LR T S I+L L L + N ++ F L +L LDL G +TN G
Sbjct: 116 NELRD--TDSLIHLKNLEILSIRNNKLKSIVMLGF--LSKLEVLDLHGNEITNTGG 167
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%)
Query: 204 IGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD 263
I L + K++ + + + LP L +E L+L +I ID F ++ LY+
Sbjct: 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 101
Query: 264 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315
N +R +P F + +L L + N ++L G F+ +L+ L + L
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Query: 170 QLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP 229
Q+ I F + +L + N + + F + L VL L N L LP +F
Sbjct: 80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139
Query: 230 LSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
L L + N + RI+ F+ T+L+ L L N+L V + L V N
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196
Query: 290 VFTTLA 295
+ +TLA
Sbjct: 197 LLSTLA 202
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 137 SIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
+++ +LK D+A + Y L VDLS+N+L I F ++L L +++N+L
Sbjct: 225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
Query: 196 SSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
++N G + +LKVL+L N L + +R LE L L N I + +
Sbjct: 285 VALN---LYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKLSTHHT 340
Query: 254 LTALRILY--LDDNQLRSV 270
L L + + D N LR++
Sbjct: 341 LKNLTLSHNDWDCNSLRAL 359
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 35/76 (46%)
Query: 243 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 302
+ ++ A + + +L L+D Q+ + T +F Y + +L +G N L F +
Sbjct: 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116
Query: 303 GRLSALDLRGAGLTNM 318
L+ L L L+++
Sbjct: 117 PLLTVLVLERNDLSSL 132
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 138 IQRLVLKYNR-IKTVDSAIQFYSSLQHVDLSHNQL-VNIPIRGFEPQEKLVELQLNHNKL 195
+Q L L YN + D A + L+ +D++ L V P F+ L L L+H L
Sbjct: 377 LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLL 436
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLED---LPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
+ N GL+ L+ LNL+GN +D L + LE L L + IDQ F
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFH 496
Query: 253 GLTALRILYLDDNQL 267
GL + L L N L
Sbjct: 497 GLRNVNHLDLSHNSL 511
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 112 DCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQ 170
D +D+ L E D+ S++ + L+ +R + S+ + ++ +Q +DL+
Sbjct: 236 DTDDQYLTSATFEGLCDM-------SVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAH 288
Query: 171 LVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAP 229
L +P G E L +L LN N + SL+ L ++GN + DL R
Sbjct: 289 LNGLP-SGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEK 347
Query: 230 LSHLEELDLGQNRISRIDQACFEGLTALRIL-YLD 263
L +L++LDL + I D C L LR L YL+
Sbjct: 348 LENLQKLDLSHSDIEASD-CCNLQLKNLRHLQYLN 381
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%)
Query: 204 IGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD 263
I L + K++ + + + LP L +E L+L +I ID F ++ LY+
Sbjct: 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 107
Query: 264 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315
N +R +P F + +L L + N ++L G F+ +L+ L + L
Sbjct: 108 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 9/129 (6%)
Query: 170 QLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP 229
Q+ I F + +L + N + + F + L VL L N L LP +F
Sbjct: 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145
Query: 230 LSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP---TPSFIYLGMLAELRV 286
L L + N + RI+ F+ T+L+ L L N+L V PS + V
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN------V 199
Query: 287 GLNVFTTLA 295
N+ +TLA
Sbjct: 200 SYNLLSTLA 208
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 11/149 (7%)
Query: 127 LDVIPITLNPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
++V+ +N + L L++N + D+A + Y L VDLS+N+L I F ++L
Sbjct: 223 INVVRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280
Query: 186 VELQLNHNKLSSVNNKTFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
L +++N+L ++N G + +LKVL+L N L + +R LE L L N I
Sbjct: 281 ERLYISNNRLVALN---LYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSI 336
Query: 244 SRIDQACFEGLTALRILY--LDDNQLRSV 270
+ + L L + + D N LR++
Sbjct: 337 VTLKLSTHHTLKNLTLSHNDWDCNSLRAL 365
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 35/76 (46%)
Query: 243 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 302
+ ++ A + + +L L+D Q+ + T +F Y + +L +G N L F +
Sbjct: 63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122
Query: 303 GRLSALDLRGAGLTNM 318
L+ L L L+++
Sbjct: 123 PLLTVLVLERNDLSSL 138
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 27/185 (14%)
Query: 137 SIQRLVLKYNRIKTVDSA---IQFYSSLQHVDLSHNQLVNIPIRGFE--PQEKLVELQLN 191
++Q L L +N I+ D ++ S LQ ++LSHN+ + + + F+ PQ +L++L
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF 251
+++ + F L L+VLNL FL+ L A L L L+L N F
Sbjct: 408 RLHINAPQSP-FQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNH--------F 458
Query: 252 EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 311
+ T + N L++V + + L L + AF+ LG++S +DL
Sbjct: 459 QDGTITKT-----NLLQTVGSLEVLILSSCGLLSID--------QQAFHSLGKMSHVDLS 505
Query: 312 GAGLT 316
LT
Sbjct: 506 HNSLT 510
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 18/112 (16%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN-- 265
S++ LNL+ + D+ F + L+ELDL + + +GL L+ L L N
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSG-MKGLNLLKKLVLSVNHF 310
Query: 266 ----QLRSVPTPSFIYL---GMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
Q+ + PS +L G + +L +G+ G LG L LDL
Sbjct: 311 DQLCQISAANFPSLTHLYIRGNVKKLHLGV--------GCLEKLGNLQTLDL 354
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 86/196 (43%), Gaps = 35/196 (17%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
SI +++ + IK+V IQ+ +L ++LS+NQ+ +I + P + +L LN NKL+
Sbjct: 45 SIDQIIANNSDIKSV-QGIQYLPNLTSLNLSNNQITDISPIQYLPN--VTKLFLNGNKLT 101
Query: 197 SVNNKTFIGLKSLKVLNL----------------------RGNFLEDLPDRLFAPLSHLE 234
+ K LK+L L L N + D+ + P LE
Sbjct: 102 DI--KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP--QLE 157
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
L LG N+I+ I LT L L L+DNQ+ + P L L L + N + L
Sbjct: 158 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHISDL 213
Query: 295 ADGAFNGLGRLSALDL 310
A GL L L+L
Sbjct: 214 R--ALAGLKNLDVLEL 227
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 138 IQRLVLKYNRIKT---VDSAIQFYSSLQHVDLSHNQLVNIPI-RGFEPQEKLVELQLNHN 193
+Q L+L+ N +K V + SSL+ +D+S N L + R E ++ L L+ N
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 194 KLSSVNNKTFIGLK-SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
L+ F L +KVL+L N + +P + L L+EL++ N++ + F+
Sbjct: 439 MLTG---SVFRCLPPKVKVLDLHNNRIMSIPKDV-THLQALQELNVASNQLKSVPDGVFD 494
Query: 253 GLTALRILYLDDN 265
LT+L+ ++L DN
Sbjct: 495 RLTSLQYIWLHDN 507
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 151 VDSAIQFYSSLQH-VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSL 209
V S F + L+ VD S+ L ++P + P+ K L L+ N +S + L L
Sbjct: 22 VGSMTPFSNELESMVDYSNRNLTHVP-KDLPPRTK--ALSLSQNSISELRMPDISFLSEL 78
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
+VL L N + L +F LE LD+ NR+ I C + +LR L L N
Sbjct: 79 RVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS-CC--PMASLRHLDLSFNDFDV 135
Query: 270 VP 271
+P
Sbjct: 136 LP 137
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 18/175 (10%)
Query: 116 ETLVVTCKEANLDVIPITLNPSIQRLV---------LKYNRIKTVDSAIQFYSSLQHVD- 165
E L E N+ ++ I+ P I + L + + DS Q S+L+ +
Sbjct: 322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381
Query: 166 --LSHNQLVNIPIRGFEPQ--EKLVELQLNHNKLSS-VNNKTFIGLKSLKVLNLRGNFLE 220
L N L N + L L ++ N L+S ++T +S+ VLNL N L
Sbjct: 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
R P ++ LDL NRI I + L AL+ L + NQL+SVP F
Sbjct: 442 GSVFRCLPP--KVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVF 493
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 220 EDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG 279
+DLP R A L L QN IS + L+ LR+L L N++RS+ F++
Sbjct: 48 KDLPPRTKA-------LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ 100
Query: 280 MLAELRVGLN 289
L L V N
Sbjct: 101 DLEYLDVSHN 110
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 134 LNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
L P ++ L L NRI ++ + +LQ ++++ NQL ++P F+ L + L+ N
Sbjct: 448 LPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 74/190 (38%), Gaps = 26/190 (13%)
Query: 101 HQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSS 160
H S P L VT + DV PI + L L YN+I+ + S + +S
Sbjct: 143 HNLSDLSPLSNXTGLNYLTVTESKVK-DVTPIANLTDLYSLSLNYNQIEDI-SPLASLTS 200
Query: 161 LQHVDLSHNQLVNIP-----------------IRGFEPQEKLVEL---QLNHNKLSSVNN 200
L + NQ+ +I I P L +L ++ N++S +N
Sbjct: 201 LHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN- 259
Query: 201 KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRIL 260
L LK LN+ N + D+ + LS L L L N++ D GLT L L
Sbjct: 260 -AVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTL 316
Query: 261 YLDDNQLRSV 270
+L N + +
Sbjct: 317 FLSQNHITDI 326
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 32/127 (25%)
Query: 145 YNRIKTVDSAIQFYSSLQHVDLSHNQLVNI-PIRGFEPQEKLVELQLNHNKLSSVNNKTF 203
+N T IQ+ ++L ++L NQ+ ++ P++ K+ EL+L+ N L +V
Sbjct: 55 FNTGVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLT---KITELELSGNPLKNV--SAI 109
Query: 204 IGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD 263
GL+S+K L+L + D+ PL+ GL+ L++LYLD
Sbjct: 110 AGLQSIKTLDLTSTQITDV-----TPLA---------------------GLSNLQVLYLD 143
Query: 264 DNQLRSV 270
NQ+ ++
Sbjct: 144 LNQITNI 150
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 176 IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEE 235
I G + L+ L+L N+++ + L + L L GN L+++ A L ++
Sbjct: 56 IEGVQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111
Query: 236 LDLGQNRISRIDQACFEGLTALRILYLDDNQLRSV 270
LDL +I+ D GL+ L++LYLD NQ+ ++
Sbjct: 112 LDLTSTQIT--DVTPLAGLSNLQVLYLDLNQITNI 144
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 137 SIQRLVLKYNRIKTVDSA--IQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
S+Q+L + N + + + SL +++S N L + R P+ K+ L L+ NK
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV--LDLHSNK 432
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
+ S+ K + L++L+ LN+ N L+ +PD +F L+ L+++ L N
Sbjct: 433 IKSIP-KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 207 KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ 266
KSL LN+ N L D R P ++ LDL N+I I + + L AL+ L + NQ
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQ 455
Query: 267 LRSVPTPSFIYLGMLAELRVGLN 289
L+SVP F L L ++ + N
Sbjct: 456 LKSVPDGIFDRLTSLQKIWLHTN 478
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 211 VLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSV 270
+LN+ N++ +L LS L L + NRI +D + F+ L L L N+L +
Sbjct: 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84
Query: 271 PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM 323
+ L L + N F L G +S L G T++ S+
Sbjct: 85 SCHPTVN---LKHLDLSFNAFDALP--ICKEFGNMSQLKFLGLSTTHLEKSSV 132
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
S L+ + +SHN++ + I F+ ++L L L+HNKL ++ + LK L+L N
Sbjct: 45 SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKH---LDLSFNA 101
Query: 219 LEDLP-DRLFAPLSHLEELDLGQNRISR 245
+ LP + F +S L+ L L + +
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLEK 129
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D I L P I+ L L N+IK++ + +LQ ++++ NQL ++P F+ L +
Sbjct: 413 DTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472
Query: 188 LQLNHN 193
+ L+ N
Sbjct: 473 IWLHTN 478
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 19/169 (11%)
Query: 145 YNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFI 204
YN+++ A L ++L++NQ+ IP E++ L HNKL + N
Sbjct: 339 YNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN--IF 396
Query: 205 GLKSLKV---LNLRGNFLEDLPDRLFAPLS-------HLEELDLGQNRISRIDQACFEGL 254
KS+ V ++ N + + + F PL ++ ++L N+IS+ + F
Sbjct: 397 DAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456
Query: 255 TALRILYLDDNQLRSVPTPS-------FIYLGMLAELRVGLNVFTTLAD 296
+ L + L N L +P S F +L + + N T L+D
Sbjct: 457 SPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 31/173 (17%)
Query: 137 SIQRLVLKYNRIKTVDSA---IQFYSSLQHVDLSHNQLVNIPIRGFE--PQEKLVEL--- 188
+++ L L ++ I+T D ++ S LQ ++LS+N+ +++ F+ PQ +L++L
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410
Query: 189 --------------------QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED---LPDR 225
L+H+ L + + F GL +L+ LNL+GN
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 278
L LE L L +S IDQ F L + + L N+L S + +L
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 203 FIGLKSLKV--LNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRIL 260
F GL + V +NL+ ++ ++ F S L+ELDL +S + GL+ L+ L
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKL 306
Query: 261 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT-TLADGAFNGLGRLSALDL 310
L N+ ++ S L L + N L G L L LDL
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQE-----KLVELQLNHNKLSSVNNKTFIGLKSLKVLNL 214
S+ +D+S+N L G+ P+E L L L HN +S L+ L +L+L
Sbjct: 633 SMMFLDMSYNML-----SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 215 RGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
N L+ + + L+ L E+DL N +S
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 11/158 (6%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQ---LNHNKLSS-VNNKTFIGLKSLKVLNLR 215
SL+ +DLS N + + G+ + EL+ ++ NK+S V+ + L+ L V +
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS-- 209
Query: 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
NF +P S L+ LD+ N++S T L++L + NQ P P
Sbjct: 210 NNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPP- 265
Query: 276 IYLGMLAELRVGLNVFT-TLADGAFNGLGRLSALDLRG 312
+ L L L + N FT + D L+ LDL G
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 179 FEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAPLSHLEELD 237
F+ ++ L +++N LS K + L +LNL N + +PD + L L LD
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNILD 686
Query: 238 LGQNRI-SRIDQACFEGLTALRILYLDDNQLRSVPTP 273
L N++ RI QA LT L + L +N L S P P
Sbjct: 687 LSSNKLDGRIPQA-MSALTMLTEIDLSNNNL-SGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQE-----KLVELQLNHNKLSSVNNKTFIGLKSLKVLNL 214
S+ +D+S+N L G+ P+E L L L HN +S L+ L +L+L
Sbjct: 630 SMMFLDMSYNML-----SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 215 RGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
N L+ + + L+ L E+DL N +S
Sbjct: 685 SSNKLDGRIPQAMSALTMLTEIDLSNNNLS 714
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 11/158 (6%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQ---LNHNKLSS-VNNKTFIGLKSLKVLNLR 215
SL+ +DLS N + + G+ + EL+ ++ NK+S V+ + L+ L V +
Sbjct: 149 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS-- 206
Query: 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
NF +P S L+ LD+ N++S T L++L + NQ P P
Sbjct: 207 NNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPP- 262
Query: 276 IYLGMLAELRVGLNVFT-TLADGAFNGLGRLSALDLRG 312
+ L L L + N FT + D L+ LDL G
Sbjct: 263 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 300
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 179 FEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAPLSHLEELD 237
F+ ++ L +++N LS K + L +LNL N + +PD + L L LD
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNILD 683
Query: 238 LGQNRI-SRIDQACFEGLTALRILYLDDNQLRSVPTP 273
L N++ RI QA LT L + L +N L S P P
Sbjct: 684 LSSNKLDGRIPQA-MSALTMLTEIDLSNNNL-SGPIP 718
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLR-GNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
V L LN N + ++N F G + L LNL N LE+LP+ +F S LD+ + RI
Sbjct: 157 VILWLNKNGIQEIHNSAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215
Query: 245 RIDQACFEGLTALR 258
+ E L LR
Sbjct: 216 SLPSYGLENLKKLR 229
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 32/181 (17%)
Query: 114 NDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVN 173
N+ V+ E+ L +P L I LV+ N + ++ + L+ +++S NQL +
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS 95
Query: 174 IPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHL 233
+P+ P L+EL + N L+ + GL L + GN L LP + P L
Sbjct: 96 LPV--LPP--GLLELSIFSNPLTHLP-ALPSGLCKLWIF---GNQLTSLP--VLPP--GL 143
Query: 234 EELDLGQNRISRIDQACFE---------GLTALRIL-------YLDDNQLRSVPT-PSFI 276
+EL + N+++ + E LT+L +L + DNQL S+PT PS +
Sbjct: 144 QELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSEL 203
Query: 277 Y 277
Y
Sbjct: 204 Y 204
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 26/177 (14%)
Query: 146 NRIKTVDSAIQFYSSLQHVDLSHNQLVNIP--------IRGFEPQ-EKLVELQLNHNKLS 196
NR+ T+ + +SL+H+D+ +NQL +P I Q L EL + LS
Sbjct: 110 NRLSTLP---ELPASLKHLDVDNNQLTXLPELPALLEYINADNNQLTXLPELPTSLEVLS 166
Query: 197 SVNNK-TFIGL--KSLKVLNLRGNFLEDLPDRLFAPLS--HLEELDL----GQNRISRID 247
NN+ TF+ +SL+ L++ N LE LP P+ H EE ++ +NRI+ I
Sbjct: 167 VRNNQLTFLPELPESLEALDVSTNLLESLP---AVPVRNHHSEETEIFFRCRENRITHIP 223
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR 304
+ L + L+DN L S S + G ++ + +DG N L R
Sbjct: 224 ENIL-SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH-GPRIYFSXSDGQQNTLHR 278
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 230 LSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
L LE L LG N+I+ I LT L L L+DNQ+R + P L L L + N
Sbjct: 131 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIRRI-VP-LARLTKLQNLYLSKN 186
Query: 290 VFTTLADGAFNGLGRLSALDL 310
+ L A GL L L+L
Sbjct: 187 HISDLR--ALRGLKNLDVLEL 205
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLR-GNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
V L LN N + ++N F G + L LNL N LE+LP+ +F S LD+ + RI
Sbjct: 157 VILWLNKNGIQEIHNCAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215
Query: 245 RIDQACFEGLTALR 258
+ E L LR
Sbjct: 216 SLPSYGLENLKKLR 229
>pdb|3K46|A Chain A, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K46|B Chain B, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K4D|A Chain A, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
pdb|3K4D|B Chain B, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
Length = 605
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 299 FNGLGRLSALDLRGAGLTN-MMGHSMALGDYL 329
F G GR DLRG G N +M H AL D++
Sbjct: 292 FTGFGRHEDADLRGKGFDNVLMVHDHALMDWI 323
>pdb|3K4A|A Chain A, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
pdb|3K4A|B Chain B, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
Length = 605
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 299 FNGLGRLSALDLRGAGLTNMMG-HSMALGDYL 329
F G GR DLRG G N++ H AL D++
Sbjct: 292 FTGFGRHEDADLRGKGFDNVLXVHDHALXDWI 323
>pdb|3LPF|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPF|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPG|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
pdb|3LPG|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
Length = 605
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 299 FNGLGRLSALDLRGAGLTNMMG-HSMALGDYL 329
F G GR DLRG G N++ H AL D++
Sbjct: 292 FTGFGRHEDADLRGKGFDNVLXVHDHALXDWI 323
>pdb|3HOL|A Chain A, The Structure Of Intact Ap-Tbpb (N And C Lobes)
Length = 509
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYN--RIKTVDSAIQFYSSL 161
S+F D +D ++ NLD +P N S KYN IKT DS++Q+ S
Sbjct: 37 SSFENKKVDISDIEVITN---GNLDDVPYKANSS------KYNYPDIKTKDSSLQYVRSG 87
Query: 162 QHVDLSH---NQLVNIPIRGFEPQEKLVELQL 190
+D H N+ + +G P ++L QL
Sbjct: 88 YVIDGEHSGSNEKGYVYYKGNSPAKELPVNQL 119
>pdb|3HOE|A Chain A, Crystal Structure Of Surface Lipoprotein
pdb|3HOE|B Chain B, Crystal Structure Of Surface Lipoprotein
Length = 255
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYN--RIKTVDSAIQFYSSL 161
S+F D +D ++ NLD +P N S KYN IKT DS++Q+ S
Sbjct: 22 SSFENKKVDISDIEVITN---GNLDDVPYKANSS------KYNYPDIKTKDSSLQYVRSG 72
Query: 162 QHVDLSH---NQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
+D H N+ + +G P ++L QL L+ + F +L R N+
Sbjct: 73 YVIDGEHSGSNEKGYVYYKGNSPAKELPVNQL----LTYTGSWDFTSNANLNNEEGRPNY 128
Query: 219 LED 221
L D
Sbjct: 129 LND 131
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 20/111 (18%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
++K L+L GN L + AP + LE L+L N + + E L+ LR L L++N +
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLDLESLSTLRTLDLNNNYV 92
Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
+ EL VG ++ T A A N + R+S RG G N+
Sbjct: 93 Q--------------ELLVGPSIETLHA--ANNNISRVSC--SRGQGKKNI 125
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
++K L+L GN L + AP + LE L+L N + + E L+ LR L L++N
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLDLESLSTLRTLDLNNN-- 90
Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
+ EL VG ++ T A A N + R+S RG G N+
Sbjct: 91 ------------YVQELLVGPSIETLHA--ANNNISRVSC--SRGQGKKNI 125
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 125 ANLDVIPITLN----PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP 175
+NL + I+ N + RL L N + + + I+ S+L+ +DLSHN+L ++P
Sbjct: 232 SNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP 286
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 204 IGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD 263
+G +L V ++G F+E + E+D Q + +D A E TA+R LY+
Sbjct: 14 VGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMK 73
Query: 264 DNQ 266
+ Q
Sbjct: 74 NGQ 76
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 204 IGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD 263
+G +L V ++G F+E + E+D Q + +D A E TA+R LY+
Sbjct: 16 VGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMK 75
Query: 264 DNQ 266
+ Q
Sbjct: 76 NGQ 78
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 204 IGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD 263
+G +L V ++G F+E + E+D Q + +D A E TA+R LY+
Sbjct: 14 VGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMK 73
Query: 264 DNQ 266
+ Q
Sbjct: 74 NGQ 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,160,192
Number of Sequences: 62578
Number of extensions: 353012
Number of successful extensions: 1336
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 375
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)