Query psy8550
Match_columns 332
No_of_seqs 337 out of 3313
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 21:44:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194|consensus 100.0 6.7E-29 1.5E-33 227.7 5.7 320 9-332 69-421 (873)
2 PLN00113 leucine-rich repeat r 99.9 9.1E-27 2E-31 240.8 10.6 284 47-330 143-455 (968)
3 KOG4237|consensus 99.9 2.9E-28 6.3E-33 214.3 -0.8 228 104-331 34-350 (498)
4 PLN00113 leucine-rich repeat r 99.9 8.5E-26 1.8E-30 233.6 14.7 298 32-331 57-360 (968)
5 KOG4194|consensus 99.9 1.2E-26 2.6E-31 213.0 7.3 232 99-332 38-322 (873)
6 KOG0444|consensus 99.9 1E-24 2.2E-29 201.9 -7.1 212 101-316 112-329 (1255)
7 KOG0472|consensus 99.9 3.5E-24 7.5E-29 189.2 -7.8 247 48-326 72-320 (565)
8 KOG0444|consensus 99.8 4.4E-23 9.5E-28 191.2 -1.5 276 46-329 34-318 (1255)
9 KOG0472|consensus 99.8 5.3E-22 1.1E-26 175.5 4.5 92 228-322 432-546 (565)
10 KOG0618|consensus 99.8 1.2E-20 2.7E-25 181.6 -4.5 258 44-330 241-503 (1081)
11 PRK15387 E3 ubiquitin-protein 99.7 8.6E-18 1.9E-22 165.5 12.1 184 119-324 266-466 (788)
12 KOG4237|consensus 99.7 8.1E-20 1.8E-24 161.3 -2.4 201 116-316 68-359 (498)
13 PRK15387 E3 ubiquitin-protein 99.7 1E-17 2.3E-22 164.9 11.6 163 117-300 304-466 (788)
14 PRK15370 E3 ubiquitin-protein 99.7 4.7E-18 1E-22 168.0 8.5 181 119-316 245-428 (754)
15 PRK15370 E3 ubiquitin-protein 99.7 7.2E-17 1.6E-21 159.6 13.0 190 117-323 180-387 (754)
16 KOG0617|consensus 99.7 3.5E-19 7.6E-24 141.0 -4.4 170 127-301 23-194 (264)
17 KOG0617|consensus 99.7 3.9E-19 8.5E-24 140.7 -4.9 164 154-322 28-192 (264)
18 KOG0618|consensus 99.7 1.4E-18 3E-23 167.7 -2.7 183 134-319 239-446 (1081)
19 PLN03210 Resistant to P. syrin 99.7 1.2E-15 2.6E-20 159.7 16.9 268 26-320 519-820 (1153)
20 PLN03210 Resistant to P. syrin 99.6 3.6E-15 7.8E-20 156.1 12.0 257 45-313 612-903 (1153)
21 cd00116 LRR_RI Leucine-rich re 99.5 1.5E-15 3.3E-20 137.7 1.7 245 58-322 14-297 (319)
22 KOG0532|consensus 99.4 4.1E-15 9E-20 137.3 -4.0 196 120-323 55-254 (722)
23 COG4886 Leucine-rich repeat (L 99.4 1.4E-13 2.9E-18 128.9 5.5 183 136-325 116-299 (394)
24 cd00116 LRR_RI Leucine-rich re 99.4 2.9E-14 6.3E-19 129.3 0.8 201 117-317 25-264 (319)
25 PF14580 LRR_9: Leucine-rich r 99.4 3.7E-13 8E-18 110.2 4.9 124 184-311 20-148 (175)
26 PF14580 LRR_9: Leucine-rich r 99.3 7.1E-13 1.5E-17 108.5 3.6 126 157-286 17-147 (175)
27 COG4886 Leucine-rich repeat (L 99.3 3.4E-12 7.3E-17 119.5 5.7 184 140-331 97-281 (394)
28 KOG1259|consensus 99.2 1.7E-12 3.8E-17 111.7 -1.1 136 155-296 280-416 (490)
29 KOG1259|consensus 99.2 3.3E-12 7.2E-17 110.0 0.2 131 184-320 285-416 (490)
30 KOG0532|consensus 99.2 8.4E-13 1.8E-17 122.2 -3.8 173 117-296 77-251 (722)
31 KOG3207|consensus 99.1 1.4E-11 3.1E-16 110.9 -0.3 203 116-318 122-341 (505)
32 PF13855 LRR_8: Leucine rich r 99.1 8.8E-11 1.9E-15 79.3 3.4 61 255-315 1-61 (61)
33 PF13855 LRR_8: Leucine rich r 99.1 1.2E-10 2.7E-15 78.6 3.9 59 160-218 2-60 (61)
34 KOG1909|consensus 99.1 2.7E-11 5.8E-16 106.3 0.0 238 58-315 21-310 (382)
35 KOG0531|consensus 99.0 3.8E-11 8.3E-16 113.0 -0.8 175 136-320 95-272 (414)
36 KOG3207|consensus 99.0 9.7E-11 2.1E-15 105.6 1.6 183 136-318 121-316 (505)
37 KOG0531|consensus 99.0 7.5E-11 1.6E-15 111.0 -0.2 190 116-316 96-290 (414)
38 PLN03150 hypothetical protein; 99.0 2.5E-09 5.4E-14 105.5 9.8 107 209-315 420-527 (623)
39 PLN03150 hypothetical protein; 98.9 4.8E-09 1E-13 103.4 8.9 109 184-292 419-528 (623)
40 KOG1909|consensus 98.7 4E-09 8.7E-14 92.8 1.6 110 207-316 157-283 (382)
41 KOG1859|consensus 98.7 5.6E-11 1.2E-15 113.1 -11.1 126 185-316 166-292 (1096)
42 PF13306 LRR_5: Leucine rich r 98.6 1.1E-07 2.5E-12 74.1 7.3 124 201-330 6-129 (129)
43 PF13306 LRR_5: Leucine rich r 98.5 2.9E-07 6.2E-12 71.9 7.6 123 177-305 6-128 (129)
44 KOG4658|consensus 98.5 1.5E-07 3.2E-12 95.5 6.2 184 136-322 523-736 (889)
45 KOG1859|consensus 98.5 7.4E-10 1.6E-14 105.7 -10.0 127 137-268 165-292 (1096)
46 KOG4579|consensus 98.4 1.8E-08 3.9E-13 77.6 -2.7 113 137-251 28-143 (177)
47 KOG1644|consensus 98.3 1.2E-06 2.5E-11 72.0 6.0 86 203-288 60-149 (233)
48 KOG1644|consensus 98.3 1.1E-06 2.4E-11 72.1 5.7 106 207-314 42-151 (233)
49 KOG4579|consensus 98.3 4.1E-08 8.8E-13 75.6 -2.5 112 184-297 28-141 (177)
50 PF12799 LRR_4: Leucine Rich r 98.3 1.2E-06 2.6E-11 54.5 4.1 40 280-320 2-41 (44)
51 KOG2120|consensus 98.3 2.7E-08 5.8E-13 86.1 -5.0 175 136-313 185-373 (419)
52 PF12799 LRR_4: Leucine Rich r 98.2 2E-06 4.3E-11 53.5 3.7 39 137-175 2-40 (44)
53 KOG2982|consensus 98.2 1.2E-06 2.6E-11 76.1 2.7 83 136-219 71-158 (418)
54 PRK15386 type III secretion pr 98.0 4.6E-05 1E-09 70.3 11.1 126 119-265 56-187 (426)
55 KOG4658|consensus 98.0 4.6E-06 1E-10 84.8 4.7 162 147-313 512-678 (889)
56 COG5238 RNA1 Ran GTPase-activa 98.0 3.8E-06 8.2E-11 72.1 2.8 181 136-316 30-255 (388)
57 PRK15386 type III secretion pr 98.0 6.8E-05 1.5E-09 69.3 10.5 133 136-290 52-188 (426)
58 COG5238 RNA1 Ran GTPase-activa 97.8 7.2E-06 1.6E-10 70.5 1.9 238 61-318 24-318 (388)
59 KOG2982|consensus 97.7 2.2E-05 4.8E-10 68.4 2.1 81 231-311 199-287 (418)
60 KOG3665|consensus 97.5 4.2E-05 9.1E-10 76.0 2.3 110 182-293 147-264 (699)
61 KOG3665|consensus 97.4 0.00012 2.6E-09 72.9 3.9 132 183-316 122-263 (699)
62 KOG2739|consensus 97.4 6.2E-05 1.3E-09 64.4 1.4 103 156-262 40-150 (260)
63 KOG2123|consensus 97.4 4.7E-06 1E-10 71.8 -5.8 79 160-242 20-99 (388)
64 KOG2120|consensus 97.3 1.4E-05 2.9E-10 69.7 -3.3 155 136-292 210-376 (419)
65 KOG2123|consensus 97.3 1.2E-05 2.6E-10 69.4 -4.1 100 182-285 18-123 (388)
66 KOG2739|consensus 97.2 0.00017 3.8E-09 61.7 2.3 106 206-313 42-153 (260)
67 PF00560 LRR_1: Leucine Rich R 96.3 0.0012 2.6E-08 34.2 0.4 19 305-324 2-20 (22)
68 smart00369 LRR_TYP Leucine-ric 95.9 0.0066 1.4E-07 32.8 2.1 23 302-324 1-23 (26)
69 smart00370 LRR Leucine-rich re 95.9 0.0066 1.4E-07 32.8 2.1 23 302-324 1-23 (26)
70 smart00013 LRRNT Leucine rich 95.8 0.012 2.6E-07 33.9 3.0 31 106-138 1-31 (33)
71 PF01462 LRRNT: Leucine rich r 95.7 0.0086 1.9E-07 33.1 2.0 28 106-135 1-28 (28)
72 PF13504 LRR_7: Leucine rich r 95.7 0.0079 1.7E-07 29.0 1.5 16 304-319 2-17 (17)
73 PF00560 LRR_1: Leucine Rich R 95.4 0.0079 1.7E-07 31.1 1.0 15 161-175 2-16 (22)
74 smart00369 LRR_TYP Leucine-ric 94.5 0.033 7.2E-07 29.9 2.1 21 207-227 2-22 (26)
75 smart00370 LRR Leucine-rich re 94.5 0.033 7.2E-07 29.9 2.1 21 207-227 2-22 (26)
76 KOG1947|consensus 94.5 0.0051 1.1E-07 58.8 -2.2 107 136-242 188-306 (482)
77 PF13504 LRR_7: Leucine rich r 94.1 0.034 7.4E-07 26.7 1.4 12 209-220 3-14 (17)
78 KOG4308|consensus 93.7 0.00057 1.2E-08 65.2 -10.2 180 138-317 89-304 (478)
79 KOG3864|consensus 90.8 0.033 7.1E-07 46.3 -1.9 33 279-311 151-184 (221)
80 KOG0473|consensus 89.4 0.0058 1.3E-07 51.8 -7.4 84 135-220 41-124 (326)
81 KOG3864|consensus 89.2 0.059 1.3E-06 44.8 -1.6 30 302-331 150-180 (221)
82 KOG0473|consensus 88.5 0.008 1.7E-07 51.0 -7.2 83 207-292 42-124 (326)
83 smart00365 LRR_SD22 Leucine-ri 86.9 0.58 1.2E-05 25.2 1.8 18 302-319 1-18 (26)
84 KOG4308|consensus 85.9 0.0096 2.1E-07 56.9 -9.4 158 136-293 115-304 (478)
85 smart00364 LRR_BAC Leucine-ric 85.8 0.53 1.2E-05 25.3 1.3 18 303-320 2-19 (26)
86 KOG1947|consensus 82.7 0.59 1.3E-05 44.5 1.2 132 182-313 187-331 (482)
87 PF13516 LRR_6: Leucine Rich r 82.5 0.2 4.3E-06 26.2 -1.2 14 303-316 2-15 (24)
88 KOG4341|consensus 76.5 1.2 2.6E-05 41.4 1.0 133 182-314 293-437 (483)
89 smart00368 LRR_RI Leucine rich 72.3 3.3 7.2E-05 22.5 1.8 15 303-317 2-16 (28)
90 KOG3763|consensus 60.8 5.2 0.00011 38.5 1.8 13 280-292 271-283 (585)
91 KOG4341|consensus 51.8 8.7 0.00019 35.9 1.6 156 136-291 268-438 (483)
92 KOG3763|consensus 49.5 10 0.00022 36.7 1.7 63 254-317 217-284 (585)
93 TIGR00864 PCC polycystin catio 42.4 17 0.00037 42.0 2.3 32 237-268 1-32 (2740)
94 TIGR00864 PCC polycystin catio 40.3 18 0.0004 41.8 2.2 32 189-220 1-32 (2740)
95 smart00367 LRR_CC Leucine-rich 31.4 35 0.00076 17.8 1.4 16 302-317 1-17 (26)
No 1
>KOG4194|consensus
Probab=99.95 E-value=6.7e-29 Score=227.65 Aligned_cols=320 Identities=23% Similarity=0.246 Sum_probs=214.4
Q ss_pred Hhhhccccce-EEEeeehhheehhhhcCCCCCCCCCCccCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHH
Q psy8550 9 KRKVQGQLDE-IFWIDILDVTYILYKLHPGFQNNPKSNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITM 87 (332)
Q Consensus 9 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~ 87 (332)
|+++.|-+|. -+-+++++++.- .....++..+| .+.......++++.||...+...+|+.|++..|..+.......
T Consensus 69 ~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~--nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L 145 (873)
T KOG4194|consen 69 KSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLP--NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL 145 (873)
T ss_pred ccccCCcCccceeeeeccccccc-cCcHHHHhcCC--cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHH
Confidence 6788888887 455666655431 11122333444 4455666667899999999999999999999999988866554
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCccc-CCCceEEecCCCccccCCCCC---CCccEEEeecCCCccchh-hhcCCCCCc
Q psy8550 88 WSLLVTTALLLLVHQASAFCPPDCDCN-DETLVVTCKEANLDVIPITLN---PSIQRLVLKYNRIKTVDS-AIQFYSSLQ 162 (332)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~p~~c~c~-~~~~~~~c~~~~l~~lp~~~~---~~L~~L~l~~~~l~~l~~-~~~~l~~L~ 162 (332)
..+. .+..+....+.....|..|.-. .....++...+.++.+-.+.. .++..|.|+.|+++.+|. .|.++++|+
T Consensus 146 ~~l~-alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 146 SALP-ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLE 224 (873)
T ss_pred HhHh-hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhh
Confidence 3333 3334445555566666666554 456678888888887765433 578888889999998888 777788999
Q ss_pred EEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCC
Q psy8550 163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNR 242 (332)
Q Consensus 163 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (332)
.|++..|+|..+.--+|.++++|+.|.+.+|.+..+...+|..+.++++|+|..|++..+..+.+.+++.|+.|+++.|.
T Consensus 225 ~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 225 SLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred hhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 99888888877765667777777777777777776666666666666666666666666655555556666666666666
Q ss_pred CcccChhhcCCCCCCcEEeCCCCCCCCcCc------------------------ccccCCCCccEEEcCCCcCCccCc--
Q psy8550 243 ISRIDQACFEGLTALRILYLDDNQLRSVPT------------------------PSFIYLGMLAELRVGLNVFTTLAD-- 296 (332)
Q Consensus 243 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~~~l~~L~~L~L~~n~l~~~~~-- 296 (332)
|..+.++.+...++|+.|+|+.|+++.+++ ..|..+++|+.|||++|.+...++
T Consensus 305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 305 IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 665555555555555555555555555543 444455566666666666654433
Q ss_pred -hhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550 297 -GAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332 (332)
Q Consensus 297 -~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l 332 (332)
.+|.++++|+.|++.||+++.|+..+|+.++.|+.|
T Consensus 385 a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred hhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 356667777777777777777777777777777643
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=9.1e-27 Score=240.83 Aligned_cols=284 Identities=21% Similarity=0.174 Sum_probs=171.4
Q ss_pred CCchhhHhhh-hccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCC
Q psy8550 47 KSPTEILKSL-LIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEA 125 (332)
Q Consensus 47 ~~~~~~~~~l-~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~ 125 (332)
..+++....+ ..+|..++++.+|+.|++++|.+.+..+..+..+..+..+.+..+......|........++.+...++
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 4444444444 367888888888888888888776655544433333333333333333344554444555666666666
Q ss_pred Ccc-ccCCCCC--CCccEEEeecCCCc-cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCcc
Q psy8550 126 NLD-VIPITLN--PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNK 201 (332)
Q Consensus 126 ~l~-~lp~~~~--~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 201 (332)
.+. .+|..+. +++++|++++|.+. .+|..++++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|.
T Consensus 223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 655 4554443 56777777777766 5666777777777777777776665556666677777777777776666666
Q ss_pred ccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcc--------
Q psy8550 202 TFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP-------- 273 (332)
Q Consensus 202 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------- 273 (332)
.+.++++|++|++++|.+....+..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..+.
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 666666777777776666655555556666666666666666654455555566666666666655543333
Q ss_pred ----------------cccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcc
Q psy8550 274 ----------------SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLH 330 (332)
Q Consensus 274 ----------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~ 330 (332)
.++.+++|+.|++++|++++..|..+.+++.|+.|++++|++++..+..+..++.|+
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 344455555555555555555555555555566666666665555555555555544
No 3
>KOG4237|consensus
Probab=99.94 E-value=2.9e-28 Score=214.31 Aligned_cols=228 Identities=29% Similarity=0.450 Sum_probs=184.2
Q ss_pred CCCCCCCCcccC-CCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCC
Q psy8550 104 SAFCPPDCDCND-ETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEP 181 (332)
Q Consensus 104 ~~~~p~~c~c~~-~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 181 (332)
...||..|.|.. +-..|+|++.+++++|.++|+....++|..|.|+.||+ +|+.+.+|+.||+++|.|+.|.|++|.+
T Consensus 34 ~~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 34 ASACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG 113 (498)
T ss_pred cccCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence 457999999986 23479999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCcEEEcCC-CcccccCccccCCCCCCCEEEccCCC------------------------CCCCCccccCCCCCCcEe
Q psy8550 182 QEKLVELQLNH-NKLSSVNNKTFIGLKSLKVLNLRGNF------------------------LEDLPDRLFAPLSHLEEL 236 (332)
Q Consensus 182 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~------------------------l~~~~~~~~~~l~~L~~L 236 (332)
+.++..|-+-+ |+|+.++...|+++.+++.|.+.-|+ +..++...|..+..++.+
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence 99988887765 89998877777776555555554444 444444444444444444
Q ss_pred eccCCCCc-------------------------------------------------------------cc-ChhhcCCC
Q psy8550 237 DLGQNRIS-------------------------------------------------------------RI-DQACFEGL 254 (332)
Q Consensus 237 ~L~~n~l~-------------------------------------------------------------~~-~~~~~~~l 254 (332)
.+..|.+- .+ +...|..+
T Consensus 194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L 273 (498)
T KOG4237|consen 194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL 273 (498)
T ss_pred hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence 44333200 00 11336778
Q ss_pred CCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 255 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
++|++|++++|+++++.+.+|..+.+++.|+|..|++..+....|.++..|++|+|.+|+|+.+.+.+|..+..|..
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 88999999999999999999999999999999999999888889999999999999999999999999998887764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=8.5e-26 Score=233.62 Aligned_cols=298 Identities=23% Similarity=0.144 Sum_probs=177.9
Q ss_pred hhcCCCCCCCCCCccCCchhhHhhh-hccchhhhhhhhhhhhhcCccccchhhhhHHHHHHH-HHHHHHHhhcCCCCCCC
Q psy8550 32 YKLHPGFQNNPKSNFKSPTEILKSL-LIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLV-TTALLLLVHQASAFCPP 109 (332)
Q Consensus 32 ~~~~~g~~~~p~~~~~~~~~~~~~l-~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 109 (332)
+..|.|+..-....+..+++....+ ..+|..+..+.+|+.|++++|.+++..+......+. +..+.+..+......|.
T Consensus 57 ~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~ 136 (968)
T PLN00113 57 VCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR 136 (968)
T ss_pred CCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc
Confidence 4466676654333345555544333 456788999999999999998887544333211000 00000001111111121
Q ss_pred CCcccCCCceEEecCCCcc-ccCCCCC--CCccEEEeecCCCc-cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCC
Q psy8550 110 DCDCNDETLVVTCKEANLD-VIPITLN--PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185 (332)
Q Consensus 110 ~c~c~~~~~~~~c~~~~l~-~lp~~~~--~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 185 (332)
.....++.++..++.+. .+|..+. ++|++|++++|.+. .+|..++++++|++|++++|.+....|..++.+++|
T Consensus 137 --~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 137 --GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred --cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 11233445555555554 3444333 56666666666654 555566666666666666666665555666666666
Q ss_pred cEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCC
Q psy8550 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265 (332)
Q Consensus 186 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 265 (332)
++|++++|.+.+..|..++++++|++|++++|.+....+..++.+++|+.|++++|.+.+..|..+.++++|+.|++++|
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 66666666666655666666666666666666666544444566666777777766666555555666667777777777
Q ss_pred CCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 266 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
.+.+..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..++.++.|+.
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~ 360 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcE
Confidence 766655556666777777777777777666666777777777777777777666666666666543
No 5
>KOG4194|consensus
Probab=99.93 E-value=1.2e-26 Score=212.96 Aligned_cols=232 Identities=28% Similarity=0.447 Sum_probs=133.8
Q ss_pred HhhcCCCCCCCCCcccCCCceEEecCCCcccc-----CCCCCCCccEEEeecCCCccchh-hhcC---------------
Q psy8550 99 LVHQASAFCPPDCDCNDETLVVTCKEANLDVI-----PITLNPSIQRLVLKYNRIKTVDS-AIQF--------------- 157 (332)
Q Consensus 99 ~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~l-----p~~~~~~L~~L~l~~~~l~~l~~-~~~~--------------- 157 (332)
........||..|.|... .++|++..++.+ +..+|...+.|++++|.+..+.. .|.+
T Consensus 38 ~ga~~~~~cpa~c~c~~~--lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt 115 (873)
T KOG4194|consen 38 AGAGDLSECPATCPCNTR--LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT 115 (873)
T ss_pred cCCCccccCCCcCCCCce--eeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh
Confidence 333444589999999865 488888887764 33444444444444444443322 2233
Q ss_pred --------------------------------CCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCC
Q psy8550 158 --------------------------------YSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIG 205 (332)
Q Consensus 158 --------------------------------l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 205 (332)
++.|+.||++.|.|++++..+|..-.++++|+|++|.|+.+....|.+
T Consensus 116 ~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ 195 (873)
T KOG4194|consen 116 RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDS 195 (873)
T ss_pred hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccc
Confidence 333333344444444444444444445555555555555555555555
Q ss_pred CCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEE
Q psy8550 206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285 (332)
Q Consensus 206 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 285 (332)
+.+|..|.|++|+++.+|...|..+++|+.|+|..|.|..+..-.|.++++|+.|.|..|.+..+..+.|-.+.++++|+
T Consensus 196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 55555666666666666665555566666666666655554444455555555555555556555566666666666666
Q ss_pred cCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550 286 VGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332 (332)
Q Consensus 286 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l 332 (332)
|+.|++...-..++.+++.|+.|+||+|.|..|.+.+++.+++|++|
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL 322 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence 66666666666666666666666666666666666666666666553
No 6
>KOG0444|consensus
Probab=99.87 E-value=1e-24 Score=201.86 Aligned_cols=212 Identities=24% Similarity=0.320 Sum_probs=112.1
Q ss_pred hcCCCCCCCCCcccCCCceEEecCCCccccCCCCC---CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCC
Q psy8550 101 HQASAFCPPDCDCNDETLVVTCKEANLDVIPITLN---PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIR 177 (332)
Q Consensus 101 ~~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~---~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~ 177 (332)
++....||..........+++.+.++++.+|..+. ..+-.|||++|.+..+|+-+..+..|++|.+++|.+....-.
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr 191 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR 191 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence 33333444444444444455555555555555444 334445555565556665555556666666666554433323
Q ss_pred CCCCCCCCcEEEcCCCcccc-cCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCC
Q psy8550 178 GFEPQEKLVELQLNHNKLSS-VNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA 256 (332)
Q Consensus 178 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (332)
.+..+++|++|.+++++-+- -.|.++.++.+|..+|++.|.+..+|+.. .++.+|+.|+|++|+|+.+... .+...+
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecl-y~l~~LrrLNLS~N~iteL~~~-~~~W~~ 269 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECL-YKLRNLRRLNLSGNKITELNMT-EGEWEN 269 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHH-hhhhhhheeccCcCceeeeecc-HHHHhh
Confidence 33334444444444432221 12445556666666777777776666653 5566777777777776665332 334456
Q ss_pred CcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCC--ccCchhcCCCCCCCEEEccCCCCC
Q psy8550 257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT--TLADGAFNGLGRLSALDLRGAGLT 316 (332)
Q Consensus 257 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~ 316 (332)
|++|++++|+++.+|. .+..+++|+.|++.+|+++ |+|. .++++..|+++..++|++.
T Consensus 270 lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 270 LETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred hhhhccccchhccchH-HHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhccccc
Confidence 6666666666666655 5556666666666666554 3332 3444444444444444333
No 7
>KOG0472|consensus
Probab=99.85 E-value=3.5e-24 Score=189.16 Aligned_cols=247 Identities=26% Similarity=0.366 Sum_probs=209.2
Q ss_pred CchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCc
Q psy8550 48 SPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANL 127 (332)
Q Consensus 48 ~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l 127 (332)
.+......+.++|++++.+.+++.+..+.+..+..++. +.+. .....++|..+.+
T Consensus 72 vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~------------------------~~l~~l~~s~n~~ 126 (565)
T KOG0472|consen 72 VLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSL------------------------ISLVKLDCSSNEL 126 (565)
T ss_pred EEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-Hhhh------------------------hhhhhhhccccce
Confidence 34444556678888888888888777777766665432 2222 2233578888888
Q ss_pred cccCCCCC--CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCC
Q psy8550 128 DVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIG 205 (332)
Q Consensus 128 ~~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 205 (332)
.++|++++ ..+..++..+|+++++|+.++++.++..+++.+|.+...++..+. ++.|++|+...|-++.+ |..+++
T Consensus 127 ~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tl-P~~lg~ 204 (565)
T KOG0472|consen 127 KELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETL-PPELGG 204 (565)
T ss_pred eecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcC-Chhhcc
Confidence 88998887 577888889999999999999999999999999999999977666 99999999999998888 557899
Q ss_pred CCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEE
Q psy8550 206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285 (332)
Q Consensus 206 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 285 (332)
+.+|..|++..|++..+|+ |+.+..|.++.++.|++..++.+...++.++.+|++.+|+++..|. .+..+.+|++||
T Consensus 205 l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd-e~clLrsL~rLD 281 (565)
T KOG0472|consen 205 LESLELLYLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD-EICLLRSLERLD 281 (565)
T ss_pred hhhhHHHHhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch-HHHHhhhhhhhc
Confidence 9999999999999999995 7889999999999999999988877899999999999999999998 567889999999
Q ss_pred cCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCC
Q psy8550 286 VGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALG 326 (332)
Q Consensus 286 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l 326 (332)
+++|.+++.++ .++++ .|+.|-+.||.+.+|-.+.+++.
T Consensus 282 lSNN~is~Lp~-sLgnl-hL~~L~leGNPlrTiRr~ii~~g 320 (565)
T KOG0472|consen 282 LSNNDISSLPY-SLGNL-HLKFLALEGNPLRTIRREIISKG 320 (565)
T ss_pred ccCCccccCCc-ccccc-eeeehhhcCCchHHHHHHHHccc
Confidence 99999999988 79999 99999999999999887776653
No 8
>KOG0444|consensus
Probab=99.85 E-value=4.4e-23 Score=191.17 Aligned_cols=276 Identities=22% Similarity=0.256 Sum_probs=203.0
Q ss_pred cCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhh-H-HHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEec
Q psy8550 46 FKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDI-T-MWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCK 123 (332)
Q Consensus 46 ~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~ 123 (332)
...+.+.+..+..+|++++.+.+|+.|.+..|........ + ..++.... +-...-.....|........+..++.+
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~--~R~N~LKnsGiP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI--VRDNNLKNSGIPTDIFRLKDLTILDLS 111 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh--hhccccccCCCCchhcccccceeeecc
Confidence 3556666778899999999999999887777655543211 0 00111111 111111223466666777777778888
Q ss_pred CCCccccCCCCC--CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCc
Q psy8550 124 EANLDVIPITLN--PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNN 200 (332)
Q Consensus 124 ~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 200 (332)
.+.+.++|..+- ++.-.|+|++|+|.+||. -+-+++.|-.||+++|++..+|| .+..+..|++|.+++|.+....-
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH-HHHHHhhhhhhhcCCChhhHHHH
Confidence 888888887664 677788888888888887 56677888888888888877774 56777888888888887766554
Q ss_pred cccCCCCCCCEEEccCCC--CCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCC
Q psy8550 201 KTFIGLKSLKVLNLRGNF--LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 278 (332)
Q Consensus 201 ~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 278 (332)
..+..+++|+.|.+++.. +..+|++ +..+.+|..+|++.|.+..+ |+.+..+++|+.|+|++|+++.+.. ..+.+
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~iteL~~-~~~~W 267 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKITELNM-TEGEW 267 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCceeeeec-cHHHH
Confidence 556667788888888765 3467766 47889999999999999877 6778889999999999999998765 56677
Q ss_pred CCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCC--CCcccccccCCCCc
Q psy8550 279 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL--TNMMGHSMALGDYL 329 (332)
Q Consensus 279 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~l~~~~~~~l~~L 329 (332)
.+|+.|+++.|+++..|. ++.+++.|+.|.+.+|++ .+||. .++.+..|
T Consensus 268 ~~lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~L 318 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQL 318 (1255)
T ss_pred hhhhhhccccchhccchH-HHhhhHHHHHHHhccCcccccCCcc-chhhhhhh
Confidence 899999999999998876 899999999999999975 57754 55555444
No 9
>KOG0472|consensus
Probab=99.85 E-value=5.3e-22 Score=175.47 Aligned_cols=92 Identities=24% Similarity=0.329 Sum_probs=68.8
Q ss_pred CCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCC-----------------------CcCcccccCCCCccEE
Q psy8550 228 APLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR-----------------------SVPTPSFIYLGMLAEL 284 (332)
Q Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------------------~~~~~~~~~l~~L~~L 284 (332)
+.+++|..|++++|.+..++. .++.+..|+.++++.|.+. .+++..+.++.+|.+|
T Consensus 432 ~~l~kLt~L~L~NN~Ln~LP~-e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLNDLPE-EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred Hhhhcceeeecccchhhhcch-hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence 445567777777777666633 3555666777776655544 4445457788999999
Q ss_pred EcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccc
Q psy8550 285 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHS 322 (332)
Q Consensus 285 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 322 (332)
||.+|.+..+|| .+++|++|+.|++.||.++ .|++.
T Consensus 511 DL~nNdlq~IPp-~LgnmtnL~hLeL~gNpfr-~Pr~~ 546 (565)
T KOG0472|consen 511 DLQNNDLQQIPP-ILGNMTNLRHLELDGNPFR-QPRHQ 546 (565)
T ss_pred ccCCCchhhCCh-hhccccceeEEEecCCccC-CCHHH
Confidence 999999999998 7999999999999999998 66554
No 10
>KOG0618|consensus
Probab=99.76 E-value=1.2e-20 Score=181.63 Aligned_cols=258 Identities=23% Similarity=0.279 Sum_probs=209.2
Q ss_pred CccCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEec
Q psy8550 44 SNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCK 123 (332)
Q Consensus 44 ~~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~ 123 (332)
+.+.+++.+...+..+|+.++.+.+|+.+....|.+.. .|..|.|...++.+.|.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~-------------------------lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVA-------------------------LPLRISRITSLVSLSAA 295 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHh-------------------------hHHHHhhhhhHHHHHhh
Confidence 55677788888888999889999888887777765522 34455666666678888
Q ss_pred CCCccccCCCCC--CCccEEEeecCCCccchh-hhcCCCC-CcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccC
Q psy8550 124 EANLDVIPITLN--PSIQRLVLKYNRIKTVDS-AIQFYSS-LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVN 199 (332)
Q Consensus 124 ~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~-~~~~l~~-L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 199 (332)
.+.++.+|.... +++++|+|..|.+..+|+ .+..... ++.|+.+.+.+...+.-.=..++.|+.|.+.+|.++.-.
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 999999987664 789999999999999998 4444433 788888888888776433345678999999999999876
Q ss_pred ccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCC
Q psy8550 200 NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG 279 (332)
Q Consensus 200 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 279 (332)
-..+.+..+|+.|+|++|++..+|...+.++..|+.|+|+||+++.++ +.+..+..|++|...+|++..+| .+..++
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP--e~~~l~ 452 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP--ELAQLP 452 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeech--hhhhcC
Confidence 667889999999999999999999999999999999999999999994 67888999999999999999998 588999
Q ss_pred CccEEEcCCCcCCccC-chhcCCCCCCCEEEccCCCCCCcccccccCCCCcc
Q psy8550 280 MLAELRVGLNVFTTLA-DGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLH 330 (332)
Q Consensus 280 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~ 330 (332)
.|+.+|++.|+++... +..... ++|++||++||.-...+...|..+.++.
T Consensus 453 qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLS 503 (1081)
T ss_pred cceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhh
Confidence 9999999999998653 333332 7999999999976556666666555543
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=8.6e-18 Score=165.49 Aligned_cols=184 Identities=25% Similarity=0.284 Sum_probs=105.4
Q ss_pred eEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCC-----------------
Q psy8550 119 VVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEP----------------- 181 (332)
Q Consensus 119 ~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~----------------- 181 (332)
.+++.++.+..+|. ++.+++.|++++|.++.+|.. .++|+.|++++|++..++. ....
T Consensus 266 ~L~Ls~N~L~~Lp~-lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~-lp~~L~~L~Ls~N~L~~LP~l 340 (788)
T PRK15387 266 ELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPTL 340 (788)
T ss_pred eeeccCCchhhhhh-chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCC-CcccccccccccCcccccccc
Confidence 45555555555553 345566666666666666542 3556666666666666542 1100
Q ss_pred CCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEe
Q psy8550 182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILY 261 (332)
Q Consensus 182 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (332)
..+|+.|++++|+++.+++ . ..+|+.|++++|.++.+|.. ..+|+.|++++|.++.++.. .++|+.|+
T Consensus 341 p~~Lq~LdLS~N~Ls~LP~-l---p~~L~~L~Ls~N~L~~LP~l----~~~L~~LdLs~N~Lt~LP~l----~s~L~~Ld 408 (788)
T PRK15387 341 PSGLQELSVSDNQLASLPT-L---PSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLPVL----PSELKELM 408 (788)
T ss_pred ccccceEecCCCccCCCCC-C---CcccceehhhccccccCccc----ccccceEEecCCcccCCCCc----ccCCCEEE
Confidence 0134444444444444321 1 12344444444444444321 23566677777766655321 24677777
Q ss_pred CCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccccc
Q psy8550 262 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA 324 (332)
Q Consensus 262 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~ 324 (332)
+++|.++++|. . +.+|+.|++++|+++.+| ..+.++++|+.|+|++|++++..+..+.
T Consensus 409 LS~N~LssIP~-l---~~~L~~L~Ls~NqLt~LP-~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 409 VSGNRLTSLPM-L---PSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred ccCCcCCCCCc-c---hhhhhhhhhccCcccccC-hHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 77777777664 1 346677888888887654 4677888888888888888877666553
No 12
>KOG4237|consensus
Probab=99.74 E-value=8.1e-20 Score=161.35 Aligned_cols=201 Identities=32% Similarity=0.445 Sum_probs=166.7
Q ss_pred CCceEEecCCCccccCCCCC---CCccEEEeecCCCccchh-hhcCCCCCcEEEeec-CcCcccCCCCCCCCCCCcEEEc
Q psy8550 116 ETLVVTCKEANLDVIPITLN---PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSH-NQLVNIPIRGFEPQEKLVELQL 190 (332)
Q Consensus 116 ~~~~~~c~~~~l~~lp~~~~---~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l 190 (332)
+...+..+.+.++.+|.+.. ++|++|||++|.|+.|.+ +|.++.++.+|.+.+ |+|+.++.+.|+++.+++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 44568889999999998765 789999999999998866 999999999988887 8999999989988887777776
Q ss_pred CCCcccccCcc------------------------ccCCCCCCCEEEccCCCC---------------------------
Q psy8550 191 NHNKLSSVNNK------------------------TFIGLKSLKVLNLRGNFL--------------------------- 219 (332)
Q Consensus 191 ~~n~l~~~~~~------------------------~~~~l~~L~~L~L~~n~l--------------------------- 219 (332)
.-|++.-+..+ .|..+.+++++.+..|.+
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 66655443333 444445555555544431
Q ss_pred -----------------------------------CCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCC
Q psy8550 220 -----------------------------------EDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDD 264 (332)
Q Consensus 220 -----------------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (332)
...|...|..+++|+.|++++|+++.+.+.+|.....++.|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 112234467889999999999999999999999999999999999
Q ss_pred CCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCC
Q psy8550 265 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316 (332)
Q Consensus 265 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 316 (332)
|++..+....|.++..|+.|+|.+|+|+.+.|.+|..+.+|.+|+|-.|.+.
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 9999999999999999999999999999999999999999999999888653
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=1e-17 Score=164.91 Aligned_cols=163 Identities=26% Similarity=0.317 Sum_probs=125.6
Q ss_pred CceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCccc
Q psy8550 117 TLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196 (332)
Q Consensus 117 ~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~ 196 (332)
+..++++++.+..+|. ++.+++.|++++|.++.+|.. ..+|+.|++++|+++.+++ . ..+|+.|++++|+++
T Consensus 304 L~~LdLS~N~L~~Lp~-lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~-l---p~~L~~L~Ls~N~L~ 375 (788)
T PRK15387 304 LQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPT-L---PSELYKLWAYNNRLT 375 (788)
T ss_pred cceeECCCCccccCCC-CcccccccccccCcccccccc---ccccceEecCCCccCCCCC-C---Ccccceehhhccccc
Confidence 4455666666666553 445566666666666665531 2479999999999998874 2 357889999999999
Q ss_pred ccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCccccc
Q psy8550 197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFI 276 (332)
Q Consensus 197 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 276 (332)
.++ .. ..+|+.|++++|.++.+|.. .++|+.|++++|.++.++. . ..+|+.|++++|+++.+|. .++
T Consensus 376 ~LP-~l---~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~-l---~~~L~~L~Ls~NqLt~LP~-sl~ 442 (788)
T PRK15387 376 SLP-AL---PSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPM-L---PSGLLSLSVYRNQLTRLPE-SLI 442 (788)
T ss_pred cCc-cc---ccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCc-c---hhhhhhhhhccCcccccCh-HHh
Confidence 874 32 35799999999999988863 3679999999999998753 2 3468889999999999876 688
Q ss_pred CCCCccEEEcCCCcCCccCchhcC
Q psy8550 277 YLGMLAELRVGLNVFTTLADGAFN 300 (332)
Q Consensus 277 ~l~~L~~L~L~~n~l~~~~~~~~~ 300 (332)
.+++|+.+++++|++++..+..+.
T Consensus 443 ~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 443 HLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred hccCCCeEECCCCCCCchHHHHHH
Confidence 999999999999999988776663
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=4.7e-18 Score=167.96 Aligned_cols=181 Identities=19% Similarity=0.282 Sum_probs=97.8
Q ss_pred eEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCccccc
Q psy8550 119 VVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSV 198 (332)
Q Consensus 119 ~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 198 (332)
.+.++++.+..+|..++.+|+.|++++|+++.+|..+. .+|+.|++++|+++.++. .+ .++|+.|++++|.++.+
T Consensus 245 ~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~-~l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 245 EMELSINRITELPERLPSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPA-HL--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred EEECcCCccCcCChhHhCCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcc-cc--hhhHHHHHhcCCccccC
Confidence 45555555555555555556666666665555554332 355666666665555542 11 13455556666655554
Q ss_pred CccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCC
Q psy8550 199 NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 278 (332)
Q Consensus 199 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 278 (332)
++ .+ .++|+.|++++|.++.+|... .++|+.|++++|.++.++. .+. ++|+.|++++|.++.+|+. +.
T Consensus 320 P~-~l--~~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~L~~LP~-~lp--~~L~~LdLs~N~Lt~LP~~-l~-- 387 (754)
T PRK15370 320 PE-TL--PPGLKTLEAGENALTSLPASL---PPELQVLDVSKNQITVLPE-TLP--PTITTLDVSRNALTNLPEN-LP-- 387 (754)
T ss_pred Cc-cc--cccceeccccCCccccCChhh---cCcccEEECCCCCCCcCCh-hhc--CCcCEEECCCCcCCCCCHh-HH--
Confidence 22 21 145666666666666655432 2456666666666665533 222 4566666666666666552 21
Q ss_pred CCccEEEcCCCcCCccCc---hhcCCCCCCCEEEccCCCCC
Q psy8550 279 GMLAELRVGLNVFTTLAD---GAFNGLGRLSALDLRGAGLT 316 (332)
Q Consensus 279 ~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~ 316 (332)
..|+.|++++|++++++. ..++.++.+..+++.+|.++
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 246666666666665432 22333456666666666653
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=7.2e-17 Score=159.64 Aligned_cols=190 Identities=25% Similarity=0.351 Sum_probs=126.2
Q ss_pred CceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCccc
Q psy8550 117 TLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196 (332)
Q Consensus 117 ~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~ 196 (332)
...+.+.+..++.+|..++++++.|++++|.++.+|..+. .+|++|++++|.++.++. .+ ..+|+.|++++|.+.
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~-~l--~~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPA-TL--PDTIQEMELSINRIT 254 (754)
T ss_pred ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCCh-hh--hccccEEECcCCccC
Confidence 3467778888888888888888888888888888887554 478888888888887763 22 235777777777776
Q ss_pred ccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhc------------------CCCCCCc
Q psy8550 197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF------------------EGLTALR 258 (332)
Q Consensus 197 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------------~~l~~L~ 258 (332)
.++ ..+. .+|+.|++++|+++.+|... . .+|+.|++++|.++.++.... .-.++|+
T Consensus 255 ~LP-~~l~--s~L~~L~Ls~N~L~~LP~~l-~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~ 328 (754)
T PRK15370 255 ELP-ERLP--SALQSLDLFHNKISCLPENL-P--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLK 328 (754)
T ss_pred cCC-hhHh--CCCCEEECcCCccCcccccc-C--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccce
Confidence 653 3332 35667777777666665543 1 356666666666665432110 0124566
Q ss_pred EEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550 259 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM 323 (332)
Q Consensus 259 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 323 (332)
.|++++|.++++|. .+ .++|+.|++++|+++.++. .+. ++|+.|++++|+++.+|+...
T Consensus 329 ~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~~LP~-~lp--~~L~~LdLs~N~Lt~LP~~l~ 387 (754)
T PRK15370 329 TLEAGENALTSLPA-SL--PPELQVLDVSKNQITVLPE-TLP--PTITTLDVSRNALTNLPENLP 387 (754)
T ss_pred eccccCCccccCCh-hh--cCcccEEECCCCCCCcCCh-hhc--CCcCEEECCCCcCCCCCHhHH
Confidence 77777777776654 22 3578888888888876554 332 578888888888888876543
No 16
>KOG0617|consensus
Probab=99.69 E-value=3.5e-19 Score=141.00 Aligned_cols=170 Identities=30% Similarity=0.395 Sum_probs=139.8
Q ss_pred ccccCCCCC-CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCC
Q psy8550 127 LDVIPITLN-PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIG 205 (332)
Q Consensus 127 l~~lp~~~~-~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 205 (332)
..++|.-+. .+++.|.+++|+++.+|+.++.+.+|+.|++.+|++.+++ .+++.+++|+.|+++-|++..+ |..|+.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp-~~issl~klr~lnvgmnrl~~l-prgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELP-TSISSLPKLRILNVGMNRLNIL-PRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcC-hhhhhchhhhheecchhhhhcC-ccccCC
Confidence 334443332 6788899999999999999999999999999999999988 5788899999999998888766 788999
Q ss_pred CCCCCEEEccCCCCCC-CCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEE
Q psy8550 206 LKSLKVLNLRGNFLED-LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284 (332)
Q Consensus 206 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 284 (332)
++.|+.||+.+|.+.+ .-|+-|-.++.|+.|++++|.+..++++ ++.+++|+.|.+..|.+..+|. .++.+..|+.|
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lpk-eig~lt~lrel 178 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLPK-EIGDLTRLREL 178 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhCcH-HHHHHHHHHHH
Confidence 9999999999998863 2234455678888999999999877554 8889999999999999988887 78888999999
Q ss_pred EcCCCcCCccCchhcCC
Q psy8550 285 RVGLNVFTTLADGAFNG 301 (332)
Q Consensus 285 ~L~~n~l~~~~~~~~~~ 301 (332)
+++||+++.++| .+++
T Consensus 179 hiqgnrl~vlpp-el~~ 194 (264)
T KOG0617|consen 179 HIQGNRLTVLPP-ELAN 194 (264)
T ss_pred hcccceeeecCh-hhhh
Confidence 999999998888 3444
No 17
>KOG0617|consensus
Probab=99.69 E-value=3.9e-19 Score=140.71 Aligned_cols=164 Identities=29% Similarity=0.394 Sum_probs=146.7
Q ss_pred hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCC
Q psy8550 154 AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHL 233 (332)
Q Consensus 154 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 233 (332)
.+..+++++.|.+++|+++.++| .++.+.+|+.|++.+|+++.+ |..++.+++|+.|++..|++..+|.+ |+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~~lprg-fgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLNILPRG-FGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhhhc-ChhhhhchhhhheecchhhhhcCccc-cCCCchh
Confidence 45678899999999999999985 678999999999999999999 66899999999999999999999987 6999999
Q ss_pred cEeeccCCCCcc-cChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccC
Q psy8550 234 EELDLGQNRISR-IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312 (332)
Q Consensus 234 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 312 (332)
+.||+.+|.+.+ ..|..|-.++.|+.|++++|.+.-+|+ .++.+++|+.|.++.|.+-..+. .++.++.|++|.+.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~lpk-eig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLSLPK-EIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhhCcH-HHHHHHHHHHHhccc
Confidence 999999998873 234556668899999999999998887 78999999999999999988876 689999999999999
Q ss_pred CCCCCccccc
Q psy8550 313 AGLTNMMGHS 322 (332)
Q Consensus 313 n~l~~l~~~~ 322 (332)
|+++.+||+.
T Consensus 183 nrl~vlppel 192 (264)
T KOG0617|consen 183 NRLTVLPPEL 192 (264)
T ss_pred ceeeecChhh
Confidence 9999999864
No 18
>KOG0618|consensus
Probab=99.68 E-value=1.4e-18 Score=167.72 Aligned_cols=183 Identities=30% Similarity=0.408 Sum_probs=119.0
Q ss_pred CCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEE
Q psy8550 134 LNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLN 213 (332)
Q Consensus 134 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 213 (332)
.+.+++.++++.|+++.+|+.++.+.+|+.+...+|.+..++ ..+....+|+.|.+.+|.+..++| ...++++|++|+
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp-~ri~~~~~L~~l~~~~nel~yip~-~le~~~sL~tLd 316 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALP-LRISRITSLVSLSAAYNELEYIPP-FLEGLKSLRTLD 316 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhH-HHHhhhhhHHHHHhhhhhhhhCCC-cccccceeeeee
Confidence 346788888888888888888888888888888888887776 455667788888888888888844 456688888888
Q ss_pred ccCCCCCCCCccccCCCC-------------------------CCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCC
Q psy8550 214 LRGNFLEDLPDRLFAPLS-------------------------HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR 268 (332)
Q Consensus 214 L~~n~l~~~~~~~~~~l~-------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 268 (332)
|..|.+..+|+..+..+. .|+.|.+.+|.+++-.-..+.+.++|+.|+|++|++.
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 888888877765443322 2334444444444333333444555555555555555
Q ss_pred CcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcc
Q psy8550 269 SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMM 319 (332)
Q Consensus 269 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~ 319 (332)
.+|...+.++..|++|+|+||+++.++ ..+.++..|++|...+|.+...|
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP 446 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP 446 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeech
Confidence 555555555555555555555555554 34555555555555555555554
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.67 E-value=1.2e-15 Score=159.66 Aligned_cols=268 Identities=16% Similarity=0.163 Sum_probs=149.2
Q ss_pred hheehhhhcCCCCCCCCCCccCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCC
Q psy8550 26 DVTYILYKLHPGFQNNPKSNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASA 105 (332)
Q Consensus 26 ~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (332)
+..+.++...+|...+. .+.-+.... .++..-+..|..|.+|+.|....+.+....... .
T Consensus 519 ~di~~vl~~~~g~~~v~-~i~l~~~~~-~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~------------------~ 578 (1153)
T PLN03210 519 KDICDVLEDNTGTKKVL-GITLDIDEI-DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVR------------------W 578 (1153)
T ss_pred HHHHHHHHhCcccceee-EEEeccCcc-ceeeecHHHHhcCccccEEEEecccccccccce------------------e
Confidence 34555666677766544 222222222 233445566999999998766543321100000 0
Q ss_pred CCCCCCccc-CCCceEEecCCCccccCCCCC-CCccEEEeecCCCccchhhhcCCCCCcEEEeecCc-CcccCCCCCCCC
Q psy8550 106 FCPPDCDCN-DETLVVTCKEANLDVIPITLN-PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQ-LVNIPIRGFEPQ 182 (332)
Q Consensus 106 ~~p~~c~c~-~~~~~~~c~~~~l~~lp~~~~-~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l 182 (332)
..|...... ..++.+.+.++.++.+|..+. .+|+.|++.++.+..++..+..+++|+.|+++++. +..++ .+..+
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l 656 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMA 656 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC--ccccC
Confidence 112222222 235566777777777776653 67777777777777777777777777777777664 44443 36667
Q ss_pred CCCcEEEcCCCcccccCccccCCCCCCCEEEccCC-CCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEe
Q psy8550 183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILY 261 (332)
Q Consensus 183 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (332)
++|++|++++|......|..+.++++|+.|++++| .++.+|... ++++|+.|++++|......|.. ..+|+.|+
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~ 731 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLD 731 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeee
Confidence 77777777776544444666777777777777775 455565532 4566666666665332221211 23445555
Q ss_pred CCCCCCCCcCcc-----------------------------cccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccC
Q psy8550 262 LDDNQLRSVPTP-----------------------------SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312 (332)
Q Consensus 262 L~~n~l~~~~~~-----------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 312 (332)
+++|.+..+|.. .+..+++|+.|++++|...+..|.+++++++|+.|++++
T Consensus 732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 555554444321 011124556666666655544555566666666666666
Q ss_pred C-CCCCccc
Q psy8550 313 A-GLTNMMG 320 (332)
Q Consensus 313 n-~l~~l~~ 320 (332)
| .+..+|.
T Consensus 812 C~~L~~LP~ 820 (1153)
T PLN03210 812 CINLETLPT 820 (1153)
T ss_pred CCCcCeeCC
Confidence 5 3444443
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.60 E-value=3.6e-15 Score=156.14 Aligned_cols=257 Identities=19% Similarity=0.145 Sum_probs=145.7
Q ss_pred ccCCchhhHhhhhccchhhhhhhhhhhhhcCcccc-chhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEec
Q psy8550 45 NFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLF-SSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCK 123 (332)
Q Consensus 45 ~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~ 123 (332)
.+..+......+..+|+.++.+.+|+.++++++.. ...+... .+..+..+.+..+......|........+..++..
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls--~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLS--MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccc--cCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 44555566566677787777888888777776432 2211111 00011111111122222334333333444455544
Q ss_pred C-CCccccCCCCC-CCccEEEeecCC-CccchhhhcCCCCCcEEEeecCcCcccCCC-----------------------
Q psy8550 124 E-ANLDVIPITLN-PSIQRLVLKYNR-IKTVDSAIQFYSSLQHVDLSHNQLVNIPIR----------------------- 177 (332)
Q Consensus 124 ~-~~l~~lp~~~~-~~L~~L~l~~~~-l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~----------------------- 177 (332)
+ ..++.+|..+. ++|+.|++++|. +..+|.. ..+|++|++++|.+..++..
T Consensus 690 ~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~ 766 (1153)
T PLN03210 690 RCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERV 766 (1153)
T ss_pred CCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccc
Confidence 3 34555555432 455555555543 2233321 23455555555555444321
Q ss_pred ------CCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC-CCCCCCccccCCCCCCcEeeccCCCCcccChhh
Q psy8550 178 ------GFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC 250 (332)
Q Consensus 178 ------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 250 (332)
.+...++|+.|++++|......|..++++++|+.|++++| .++.+|... .+++|+.|++++|......|.
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~- 843 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPD- 843 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCccccccc-
Confidence 1222356777777777555545677778888888888776 466666543 577788888887643322222
Q ss_pred cCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCC-cCCccCchhcCCCCCCCEEEccCC
Q psy8550 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN-VFTTLADGAFNGLGRLSALDLRGA 313 (332)
Q Consensus 251 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 313 (332)
..++|+.|++++|.+..+|. ++..+++|+.|++++| ++..+++ .+..+++|+.+++++|
T Consensus 844 --~~~nL~~L~Ls~n~i~~iP~-si~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 844 --ISTNISDLNLSRTGIEEVPW-WIEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSDC 903 (1153)
T ss_pred --cccccCEeECCCCCCccChH-HHhcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCCC
Confidence 13567788888888887765 6777888888888874 5555444 5677788888888887
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.54 E-value=1.5e-15 Score=137.70 Aligned_cols=245 Identities=20% Similarity=0.168 Sum_probs=163.0
Q ss_pred ccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCccc-------c
Q psy8550 58 IIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDV-------I 130 (332)
Q Consensus 58 ~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~-------l 130 (332)
..+..+..+.+|+.+.++++.++.......... . ........+.+.++.+.. +
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~---l-----------------~~~~~l~~l~l~~~~~~~~~~~~~~~ 73 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASA---L-----------------RPQPSLKELCLSLNETGRIPRGLQSL 73 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHH---H-----------------hhCCCceEEeccccccCCcchHHHHH
Confidence 345567777778888888887765322111100 0 111122234444443331 2
Q ss_pred CCCC--CCCccEEEeecCCCc-cchhhhcCCCC---CcEEEeecCcCcccC----CCCCCCC-CCCcEEEcCCCcccccC
Q psy8550 131 PITL--NPSIQRLVLKYNRIK-TVDSAIQFYSS---LQHVDLSHNQLVNIP----IRGFEPQ-EKLVELQLNHNKLSSVN 199 (332)
Q Consensus 131 p~~~--~~~L~~L~l~~~~l~-~l~~~~~~l~~---L~~L~l~~~~l~~~~----~~~~~~l-~~L~~L~l~~n~l~~~~ 199 (332)
+..+ .++++.|++++|.+. ..+..+..+.+ |++|++++|.+.... ...+..+ ++|+.|++++|.+++..
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 2222 268999999999987 34445555555 999999999887311 1344556 89999999999988422
Q ss_pred ----ccccCCCCCCCEEEccCCCCCCCC----ccccCCCCCCcEeeccCCCCcccCh----hhcCCCCCCcEEeCCCCCC
Q psy8550 200 ----NKTFIGLKSLKVLNLRGNFLEDLP----DRLFAPLSHLEELDLGQNRISRIDQ----ACFEGLTALRILYLDDNQL 267 (332)
Q Consensus 200 ----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l 267 (332)
+..+..+.+|++|++++|.++... ...+...++|+.|++++|.++.... ..+..+++|++|++++|.+
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 345667789999999999987421 1123556799999999998875432 3466788999999999998
Q ss_pred CCcCccccc-----CCCCccEEEcCCCcCCc----cCchhcCCCCCCCEEEccCCCCCCccccc
Q psy8550 268 RSVPTPSFI-----YLGMLAELRVGLNVFTT----LADGAFNGLGRLSALDLRGAGLTNMMGHS 322 (332)
Q Consensus 268 ~~~~~~~~~-----~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 322 (332)
++.....+. ..+.|++|++++|.++. .....+..+++|+++|+++|.++.-+...
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 863322222 23789999999999972 12345667789999999999998664433
No 22
>KOG0532|consensus
Probab=99.43 E-value=4.1e-15 Score=137.27 Aligned_cols=196 Identities=26% Similarity=0.314 Sum_probs=157.0
Q ss_pred EEecCCCccccCCCCC----CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcc
Q psy8550 120 VTCKEANLDVIPITLN----PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195 (332)
Q Consensus 120 ~~c~~~~l~~lp~~~~----~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l 195 (332)
+...+..++.+|..-. ......|++.|++.++|..+..+..|+.+.+++|.+..++ .++..+..|++++++.|++
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip-~~i~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIP-EAICNLEALTFLDLSSNQL 133 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecc-hhhhhhhHHHHhhhccchh
Confidence 4455566666664322 3456678888999999998888888999999999888887 6788889999999999999
Q ss_pred cccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccc
Q psy8550 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275 (332)
Q Consensus 196 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 275 (332)
+.+++ .+..+ -|+.|-+++|+++.+|+++ +.+..|..||.+.|.+..+++. ++.+.+|+.|++..|++..+|+ .+
T Consensus 134 S~lp~-~lC~l-pLkvli~sNNkl~~lp~~i-g~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~l~~lp~-El 208 (722)
T KOG0532|consen 134 SHLPD-GLCDL-PLKVLIVSNNKLTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNHLEDLPE-EL 208 (722)
T ss_pred hcCCh-hhhcC-cceeEEEecCccccCCccc-ccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhhhhhCCH-HH
Confidence 88854 34343 5888999999999998885 6788899999999999888554 7788899999999999998887 45
Q ss_pred cCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550 276 IYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM 323 (332)
Q Consensus 276 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 323 (332)
+. -.|.+||++.|++..+|- .|.+|+.|++|-|.+|.+++-|....
T Consensus 209 ~~-LpLi~lDfScNkis~iPv-~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 209 CS-LPLIRLDFSCNKISYLPV-DFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred hC-CceeeeecccCceeecch-hhhhhhhheeeeeccCCCCCChHHHH
Confidence 53 468899999999988876 78999999999999999988766553
No 23
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.42 E-value=1.4e-13 Score=128.90 Aligned_cols=183 Identities=31% Similarity=0.464 Sum_probs=154.2
Q ss_pred CCccEEEeecCCCccchhhhcCCC-CCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEc
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYS-SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL 214 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 214 (332)
+.++.|++.++.++.+++....+. +|+.|++++|++..++ ..+..+++|+.|+++.|++..+++ ..+..++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchhhhhhh-hhhhhhhhhheec
Confidence 578999999999999999888885 9999999999999886 467889999999999999999854 3447789999999
Q ss_pred cCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy8550 215 RGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294 (332)
Q Consensus 215 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 294 (332)
++|.+..+|+.. ..+..|+++.+++|.+... +..+..+.++..+.+.+|++..++. .++.+++++.|++++|.++.+
T Consensus 194 s~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 194 SGNKISDLPPEI-ELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred cCCccccCchhh-hhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeeccc-hhccccccceecccccccccc
Confidence 999999999863 4556699999999965444 3347788889899999999887644 677888899999999999998
Q ss_pred CchhcCCCCCCCEEEccCCCCCCcccccccC
Q psy8550 295 ADGAFNGLGRLSALDLRGAGLTNMMGHSMAL 325 (332)
Q Consensus 295 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~ 325 (332)
.. ++.+.+++.||+++|.+..+++.....
T Consensus 271 ~~--~~~~~~l~~L~~s~n~~~~~~~~~~~~ 299 (394)
T COG4886 271 SS--LGSLTNLRELDLSGNSLSNALPLIALL 299 (394)
T ss_pred cc--ccccCccCEEeccCccccccchhhhcc
Confidence 87 888999999999999998887765543
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.42 E-value=2.9e-14 Score=129.29 Aligned_cols=201 Identities=26% Similarity=0.274 Sum_probs=143.8
Q ss_pred CceEEecCCCcc-----ccCCCCC--CCccEEEeecCCCcc-------chhhhcCCCCCcEEEeecCcCcccCCCCCCCC
Q psy8550 117 TLVVTCKEANLD-----VIPITLN--PSIQRLVLKYNRIKT-------VDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQ 182 (332)
Q Consensus 117 ~~~~~c~~~~l~-----~lp~~~~--~~L~~L~l~~~~l~~-------l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 182 (332)
...+.+.++.+. .++..+. +++++++++++.+.. ++..+..+++|++|++++|.+....+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 446777776663 3333332 568999999887662 34467788999999999999875444444444
Q ss_pred C---CCcEEEcCCCccccc----CccccCCC-CCCCEEEccCCCCCCCC----ccccCCCCCCcEeeccCCCCcccC---
Q psy8550 183 E---KLVELQLNHNKLSSV----NNKTFIGL-KSLKVLNLRGNFLEDLP----DRLFAPLSHLEELDLGQNRISRID--- 247 (332)
Q Consensus 183 ~---~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~--- 247 (332)
. +|++|++++|.+... ....+..+ ++|+.|++++|.++... ...+..+.+|+.|++++|.+++..
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 4 499999999988732 12345566 89999999999988322 223466788999999999988421
Q ss_pred -hhhcCCCCCCcEEeCCCCCCCCcCc----ccccCCCCccEEEcCCCcCCccCchhcC-----CCCCCCEEEccCCCCCC
Q psy8550 248 -QACFEGLTALRILYLDDNQLRSVPT----PSFIYLGMLAELRVGLNVFTTLADGAFN-----GLGRLSALDLRGAGLTN 317 (332)
Q Consensus 248 -~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~ 317 (332)
+..+..+++|+.|++++|.+.+... ..+..+++|++|++++|.+++.....+. ..+.|+.|++++|.++.
T Consensus 185 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 264 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264 (319)
T ss_pred HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence 2335566799999999999875432 2455678999999999999863322222 24799999999999873
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.38 E-value=3.7e-13 Score=110.18 Aligned_cols=124 Identities=31% Similarity=0.389 Sum_probs=34.6
Q ss_pred CCcEEEcCCCcccccCccccC-CCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeC
Q psy8550 184 KLVELQLNHNKLSSVNNKTFI-GLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL 262 (332)
Q Consensus 184 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 262 (332)
+++.|++++|.|+.+. .++ .+.+|+.|++++|.++.+.. +..+++|++|++++|.++.+.+.....+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccc--chhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4444445444444442 122 24455555555555554443 344555555555555555553321223455555555
Q ss_pred CCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCc---hhcCCCCCCCEEEcc
Q psy8550 263 DDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLAD---GAFNGLGRLSALDLR 311 (332)
Q Consensus 263 ~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls 311 (332)
++|++..+.. ..++.+++|+.|++.+|+++.... ..+..+++|+.||-.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 5555554332 234455666666666666654322 234455666666543
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.33 E-value=7.1e-13 Score=108.52 Aligned_cols=126 Identities=28% Similarity=0.378 Sum_probs=42.2
Q ss_pred CCCCCcEEEeecCcCcccCCCCCC-CCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcE
Q psy8550 157 FYSSLQHVDLSHNQLVNIPIRGFE-PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEE 235 (332)
Q Consensus 157 ~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 235 (332)
+..++++|++.+|.|+.|. .++ .+.+|+.|++++|.++.+. .+..+++|++|++++|.++.+.+.....+++|+.
T Consensus 17 n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccc--chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 3445666777777766664 233 4566777777777776663 3556677777777777777665443234667777
Q ss_pred eeccCCCCcccCh-hhcCCCCCCcEEeCCCCCCCCcCc---ccccCCCCccEEEc
Q psy8550 236 LDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVPT---PSFIYLGMLAELRV 286 (332)
Q Consensus 236 L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L 286 (332)
|++++|++..+.. ..+..+++|+.|++.+|.++..+. ..+..+++|+.||-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7777777665433 345566777777777777765443 23455677777663
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=3.4e-12 Score=119.47 Aligned_cols=184 Identities=31% Similarity=0.396 Sum_probs=150.7
Q ss_pred EEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCC-CCcEEEcCCCcccccCccccCCCCCCCEEEccCCC
Q psy8550 140 RLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE-KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218 (332)
Q Consensus 140 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 218 (332)
.++...+.+..-...+..++.++.|++.++.++.+++ ....+. +|+.|++++|.+..+ |..++.+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchhhh-hhhhhccccccccccCCch
Confidence 5777777775444556677899999999999999984 445553 999999999999988 3557899999999999999
Q ss_pred CCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchh
Q psy8550 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA 298 (332)
Q Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 298 (332)
+..+++.. +.+++|+.|++++|++..+++. ......|+.+.+++|.+...+. .+..+.++..+.+.+|++...+ ..
T Consensus 175 l~~l~~~~-~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~-~~~~~~~l~~l~l~~n~~~~~~-~~ 250 (394)
T COG4886 175 LSDLPKLL-SNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLS-SLSNLKNLSGLELSNNKLEDLP-ES 250 (394)
T ss_pred hhhhhhhh-hhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecch-hhhhcccccccccCCceeeecc-ch
Confidence 99999864 4789999999999999999664 3445669999999997655554 5778889999999999988764 36
Q ss_pred cCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 299 FNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 299 ~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
++.++++++|++++|.++.++. ++....|+.
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~ 281 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRE 281 (394)
T ss_pred hccccccceecccccccccccc--ccccCccCE
Confidence 8889999999999999999987 666555553
No 28
>KOG1259|consensus
Probab=99.19 E-value=1.7e-12 Score=111.73 Aligned_cols=136 Identities=28% Similarity=0.383 Sum_probs=95.3
Q ss_pred hcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCc
Q psy8550 155 IQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234 (332)
Q Consensus 155 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 234 (332)
+.....|+++|+++|.|+.+. .+..-.+.++.|++++|.+..+.. +..+.+|+.|||++|.++.+.... .++.+.+
T Consensus 280 ~dTWq~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh-~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWH-LKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchhhhh-hhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhH-hhhcCEe
Confidence 334456777777777777776 556667777777777777777643 667777778888877777665433 4567777
Q ss_pred EeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCc
Q psy8550 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLAD 296 (332)
Q Consensus 235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~ 296 (332)
+|.+++|.+..+.. +..+.+|..|++++|+|..... ..+|+++-|+++.|.+|++.+++.
T Consensus 356 tL~La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 356 TLKLAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eeehhhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 77888777776533 5667777777888877765432 356777778888888887777654
No 29
>KOG1259|consensus
Probab=99.18 E-value=3.3e-12 Score=110.02 Aligned_cols=131 Identities=24% Similarity=0.315 Sum_probs=74.7
Q ss_pred CCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCC
Q psy8550 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD 263 (332)
Q Consensus 184 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (332)
.|+.+|+++|.|+.+ .+++.-++.++.|+++.|++..+.. +..+.+|+.||+++|.++.+.. +-..+-+.++|.|+
T Consensus 285 ~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchhhh-hhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhh-hHhhhcCEeeeehh
Confidence 455566666666555 3445555566666666666655544 4555666666666665555422 12234455566666
Q ss_pred CCCCCCcCcccccCCCCccEEEcCCCcCCccCc-hhcCCCCCCCEEEccCCCCCCccc
Q psy8550 264 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNMMG 320 (332)
Q Consensus 264 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~ 320 (332)
+|.+.++.. ++.+.+|..||+++|++..... ..+++++-|+.+.|.+|.+..++.
T Consensus 361 ~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 361 QNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 666555442 5556666666666666665433 456666666666666666665543
No 30
>KOG0532|consensus
Probab=99.18 E-value=8.4e-13 Score=122.24 Aligned_cols=173 Identities=25% Similarity=0.344 Sum_probs=148.7
Q ss_pred CceEEecCCCccccCCCCC--CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCc
Q psy8550 117 TLVVTCKEANLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194 (332)
Q Consensus 117 ~~~~~c~~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 194 (332)
...++...+.+.++|.... ..|..+.+..|.+..+|..+.++..|+.|+++.|+++.++. .++.+ -|+.|-+++|+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~-~lC~l-pLkvli~sNNk 154 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPD-GLCDL-PLKVLIVSNNK 154 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCCh-hhhcC-cceeEEEecCc
Confidence 3456777888888887664 67888889999999999999999999999999999999884 34444 58999999999
Q ss_pred ccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCccc
Q psy8550 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPS 274 (332)
Q Consensus 195 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 274 (332)
++.+ |+.++.+..|..||.+.|.+..+|+.. +.+.+|+.|.+..|.+..++++ +.. -.|..||++.|+++.+|. .
T Consensus 155 l~~l-p~~ig~~~tl~~ld~s~nei~slpsql-~~l~slr~l~vrRn~l~~lp~E-l~~-LpLi~lDfScNkis~iPv-~ 229 (722)
T KOG0532|consen 155 LTSL-PEEIGLLPTLAHLDVSKNEIQSLPSQL-GYLTSLRDLNVRRNHLEDLPEE-LCS-LPLIRLDFSCNKISYLPV-D 229 (722)
T ss_pred cccC-CcccccchhHHHhhhhhhhhhhchHHh-hhHHHHHHHHHhhhhhhhCCHH-HhC-CceeeeecccCceeecch-h
Confidence 9988 667788899999999999999999875 8899999999999999999666 444 458899999999999987 8
Q ss_pred ccCCCCccEEEcCCCcCCccCc
Q psy8550 275 FIYLGMLAELRVGLNVFTTLAD 296 (332)
Q Consensus 275 ~~~l~~L~~L~L~~n~l~~~~~ 296 (332)
|..|+.|++|-|.+|.+...+.
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred hhhhhhheeeeeccCCCCCChH
Confidence 9999999999999999987665
No 31
>KOG3207|consensus
Probab=99.09 E-value=1.4e-11 Score=110.92 Aligned_cols=203 Identities=23% Similarity=0.222 Sum_probs=136.4
Q ss_pred CCceEEecCCCccccCC----CCCCCccEEEeecCCCcc---chhhhcCCCCCcEEEeecCcCcccCCC-CCCCCCCCcE
Q psy8550 116 ETLVVTCKEANLDVIPI----TLNPSIQRLVLKYNRIKT---VDSAIQFYSSLQHVDLSHNQLVNIPIR-GFEPQEKLVE 187 (332)
Q Consensus 116 ~~~~~~c~~~~l~~lp~----~~~~~L~~L~l~~~~l~~---l~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~ 187 (332)
.++.+..++..+...+. ...++++.|||+.|-+.. +-.....+++|+.|+++.|++...... .-..+++|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 44556666666655553 123788999999887663 334667889999999999887654322 2235678889
Q ss_pred EEcCCCcccccCc-cccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccCh-hhcCCCCCCcEEeCCCC
Q psy8550 188 LQLNHNKLSSVNN-KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDN 265 (332)
Q Consensus 188 L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n 265 (332)
|.++.|.++.-.- .....+++|+.|+|..|....+.......+..|+.|||++|.+...+. ...+.++.|+.|+++.|
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 9998888774321 223456888899998885222222223446778899999888776642 34677888888888888
Q ss_pred CCCCcCcccc------cCCCCccEEEcCCCcCCccCc-hhcCCCCCCCEEEccCCCCCCc
Q psy8550 266 QLRSVPTPSF------IYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNM 318 (332)
Q Consensus 266 ~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l 318 (332)
.+.++....- ...++|+.|+++.|++..+.. ..+..+.+|..|.+..|.+..-
T Consensus 282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 8876543222 356788999999998877654 3445566777777777777643
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=8.8e-11 Score=79.34 Aligned_cols=61 Identities=34% Similarity=0.464 Sum_probs=43.2
Q ss_pred CCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCC
Q psy8550 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315 (332)
Q Consensus 255 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 315 (332)
++|++|++++|+++.+++..|..+++|+.|++++|.++.+++.+|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566677777777777766777777777777777777777777777777777777777754
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.07 E-value=1.2e-10 Score=78.64 Aligned_cols=59 Identities=36% Similarity=0.559 Sum_probs=37.0
Q ss_pred CCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCC
Q psy8550 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218 (332)
Q Consensus 160 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 218 (332)
+|++|++++|+++.+++..|.++++|++|++++|.++.+++.+|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666666666666666666666666666666666666666666666666654
No 34
>KOG1909|consensus
Probab=99.05 E-value=2.7e-11 Score=106.33 Aligned_cols=238 Identities=21% Similarity=0.193 Sum_probs=167.8
Q ss_pred ccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecC----CCccccCCC
Q psy8550 58 IIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKE----ANLDVIPIT 133 (332)
Q Consensus 58 ~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~----~~l~~lp~~ 133 (332)
.+-+..-.++.+..+++++|.|..-..-.+...+. -...++.+.+++ ....++|..
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~--------------------~~~~L~~v~~sd~ftGR~~~Ei~e~ 80 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLA--------------------SKKELREVNLSDMFTGRLKDEIPEA 80 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHh--------------------hcccceeeehHhhhcCCcHHHHHHH
Confidence 33444666778888889998887664322211111 112344555543 233344532
Q ss_pred C---------CCCccEEEeecCCCc-----cchhhhcCCCCCcEEEeecCcCcccCC-------------CCCCCCCCCc
Q psy8550 134 L---------NPSIQRLVLKYNRIK-----TVDSAIQFYSSLQHVDLSHNQLVNIPI-------------RGFEPQEKLV 186 (332)
Q Consensus 134 ~---------~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~l~~~~~-------------~~~~~l~~L~ 186 (332)
+ .+.+++|+|++|.+. .+..-+..+..|++|.+.+|.+..... ...+.-+.|+
T Consensus 81 L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr 160 (382)
T KOG1909|consen 81 LKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR 160 (382)
T ss_pred HHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE
Confidence 2 158999999999887 233367889999999999999874332 2234568899
Q ss_pred EEEcCCCcccccCc----cccCCCCCCCEEEccCCCCCCCC----ccccCCCCCCcEeeccCCCCcccCh----hhcCCC
Q psy8550 187 ELQLNHNKLSSVNN----KTFIGLKSLKVLNLRGNFLEDLP----DRLFAPLSHLEELDLGQNRISRIDQ----ACFEGL 254 (332)
Q Consensus 187 ~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l 254 (332)
++...+|++..-.. ..|...+.|+.+.++.|.+..-. ...|..+++|+.|||.+|.++.-.. ..+..+
T Consensus 161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence 99999998876532 45677789999999999876322 2346788999999999998885433 556778
Q ss_pred CCCcEEeCCCCCCCCcCcccc-----cCCCCccEEEcCCCcCCcc----CchhcCCCCCCCEEEccCCCC
Q psy8550 255 TALRILYLDDNQLRSVPTPSF-----IYLGMLAELRVGLNVFTTL----ADGAFNGLGRLSALDLRGAGL 315 (332)
Q Consensus 255 ~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l 315 (332)
+.|+.+++++|.+..-....+ ...++|+.+.+.+|.++.. ...++...+.|..|+|++|++
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 899999999999986544333 2468999999999999842 334556688999999999999
No 35
>KOG0531|consensus
Probab=99.01 E-value=3.8e-11 Score=112.96 Aligned_cols=175 Identities=33% Similarity=0.451 Sum_probs=128.1
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 215 (332)
.++..|++.+|.|..+...+..+++|++|++++|.|+.+. .+..++.|+.|++.+|.++.+. .+..+.+|+.++++
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDIS--GLESLKSLKLLDLS 170 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhcc--CCccchhhhcccCC
Confidence 6788888888888877665777888888888888888775 4566777888888888887764 35567788888888
Q ss_pred CCCCCCCCc-cccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCC--ccEEEcCCCcCC
Q psy8550 216 GNFLEDLPD-RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM--LAELRVGLNVFT 292 (332)
Q Consensus 216 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~ 292 (332)
+|.+..+.. . ...+.+++.+++.+|.+..+.. +..+..+..+++..|.++.+.+ +..+.. |+.+++++|++.
T Consensus 171 ~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 171 YNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred cchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc
Confidence 888887766 2 2556778888888887776644 2333455555777777776654 222333 889999999998
Q ss_pred ccCchhcCCCCCCCEEEccCCCCCCccc
Q psy8550 293 TLADGAFNGLGRLSALDLRGAGLTNMMG 320 (332)
Q Consensus 293 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~ 320 (332)
..+ ..+..+..+..+|+++|++..+..
T Consensus 246 ~~~-~~~~~~~~l~~l~~~~n~~~~~~~ 272 (414)
T KOG0531|consen 246 RSP-EGLENLKNLPVLDLSSNRISNLEG 272 (414)
T ss_pred ccc-ccccccccccccchhhcccccccc
Confidence 764 356678889999999998876544
No 36
>KOG3207|consensus
Probab=99.01 E-value=9.7e-11 Score=105.62 Aligned_cols=183 Identities=22% Similarity=0.217 Sum_probs=106.5
Q ss_pred CCccEEEeecCCCccchh--hhcCCCCCcEEEeecCcCcccCC--CCCCCCCCCcEEEcCCCcccccCcc-ccCCCCCCC
Q psy8550 136 PSIQRLVLKYNRIKTVDS--AIQFYSSLQHVDLSHNQLVNIPI--RGFEPQEKLVELQLNHNKLSSVNNK-TFIGLKSLK 210 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~ 210 (332)
.+|+.+.|+++.+...+. ....+++++.||+++|-+....+ .....+++|+.|+++.|++...... .-..+++|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 456677777776665553 55667777777777776554321 2234567777777777766543221 122356677
Q ss_pred EEEccCCCCCCCC-ccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCc-ccccCCCCccEEEcCC
Q psy8550 211 VLNLRGNFLEDLP-DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGL 288 (332)
Q Consensus 211 ~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~ 288 (332)
.|.++.|+++.-. ......+++|+.|++.+|....+.......+..|+.|+|++|.+.+.+. ...+.++.|+.|+++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 7777777766211 1122345677777777774333323333445567777777777766552 2445667777777777
Q ss_pred CcCCccCc-hh-----cCCCCCCCEEEccCCCCCCc
Q psy8550 289 NVFTTLAD-GA-----FNGLGRLSALDLRGAGLTNM 318 (332)
Q Consensus 289 n~l~~~~~-~~-----~~~l~~L~~L~Ls~n~l~~l 318 (332)
|.+..+.. +. ...+++|++|+++.|++...
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence 76665422 11 13456677777777776543
No 37
>KOG0531|consensus
Probab=98.98 E-value=7.5e-11 Score=111.01 Aligned_cols=190 Identities=27% Similarity=0.397 Sum_probs=130.0
Q ss_pred CCceEEecCCCccccCC--CCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC
Q psy8550 116 ETLVVTCKEANLDVIPI--TLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193 (332)
Q Consensus 116 ~~~~~~c~~~~l~~lp~--~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n 193 (332)
....+...++.++.+.. +..+++++|++++|.|+.+.. +..++.|+.|++++|.|..+. .+..+..|+.+++++|
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDIS--GLESLKSLKLLDLSYN 172 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhcc--CCccchhhhcccCCcc
Confidence 34456777777777665 334788888888888887743 566666888888888888775 3555788888888888
Q ss_pred cccccCc-cccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCC--CcEEeCCCCCCCCc
Q psy8550 194 KLSSVNN-KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA--LRILYLDDNQLRSV 270 (332)
Q Consensus 194 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~ 270 (332)
.+..+.+ . ...+.+++.+++.+|.+..+.. +..+..+..+++..|.++.+.+ +..+.. |+.+++++|.+...
T Consensus 173 ~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 173 RIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred hhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccc
Confidence 8887765 2 3567788888888888776654 2334555566777777776644 223333 77888888888766
Q ss_pred CcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCC
Q psy8550 271 PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316 (332)
Q Consensus 271 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 316 (332)
+. .+..+..+..+++.+|++..... +.....+..+..+.|.+.
T Consensus 248 ~~-~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 248 PE-GLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLA 290 (414)
T ss_pred cc-cccccccccccchhhcccccccc--ccccchHHHhccCcchhc
Confidence 42 45566777888888887776543 345556666777777655
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.96 E-value=2.5e-09 Score=105.46 Aligned_cols=107 Identities=20% Similarity=0.197 Sum_probs=83.4
Q ss_pred CCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCC
Q psy8550 209 LKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 288 (332)
Q Consensus 209 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 288 (332)
++.|+|++|.+....+..++.+++|+.|+|++|.+.+..|..++.+++|+.|++++|++++..+..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 66788888888765555567888888888888888866676788888888888888888877776788888888888888
Q ss_pred CcCCccCchhcCCC-CCCCEEEccCCCC
Q psy8550 289 NVFTTLADGAFNGL-GRLSALDLRGAGL 315 (332)
Q Consensus 289 n~l~~~~~~~~~~l-~~L~~L~Ls~n~l 315 (332)
|++++..|..++.. .++..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 88888777766653 4567788888854
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.89 E-value=4.8e-09 Score=103.43 Aligned_cols=109 Identities=24% Similarity=0.207 Sum_probs=93.7
Q ss_pred CCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCC
Q psy8550 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD 263 (332)
Q Consensus 184 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (332)
.++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+..+..++.+++|+.|++++|.+++..|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999889999999999999999999986555557999999999999999998878889999999999999
Q ss_pred CCCCCCcCcccccCC-CCccEEEcCCCcCC
Q psy8550 264 DNQLRSVPTPSFIYL-GMLAELRVGLNVFT 292 (332)
Q Consensus 264 ~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~ 292 (332)
+|.+++..|..++.. .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 999997766666553 46778999988644
No 40
>KOG1909|consensus
Probab=98.72 E-value=4e-09 Score=92.84 Aligned_cols=110 Identities=27% Similarity=0.283 Sum_probs=50.6
Q ss_pred CCCCEEEccCCCCCCCCc----cccCCCCCCcEeeccCCCCccc----ChhhcCCCCCCcEEeCCCCCCCCcCc----cc
Q psy8550 207 KSLKVLNLRGNFLEDLPD----RLFAPLSHLEELDLGQNRISRI----DQACFEGLTALRILYLDDNQLRSVPT----PS 274 (332)
Q Consensus 207 ~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~ 274 (332)
+.|+.+...+|++..-+. ..|...+.|+.+.+..|.|..- ....+.++++|+.|+|.+|-++.-.. ..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 345555555555443332 1233334555555555544321 12334455555555555555543221 22
Q ss_pred ccCCCCccEEEcCCCcCCccCchhc-----CCCCCCCEEEccCCCCC
Q psy8550 275 FIYLGMLAELRVGLNVFTTLADGAF-----NGLGRLSALDLRGAGLT 316 (332)
Q Consensus 275 ~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~ 316 (332)
+..+++|+.+++++|.+..--..+| ...++|+++.+.+|.++
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 3344555555555555553322111 22455556666655554
No 41
>KOG1859|consensus
Probab=98.70 E-value=5.6e-11 Score=113.15 Aligned_cols=126 Identities=25% Similarity=0.338 Sum_probs=63.3
Q ss_pred CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCC
Q psy8550 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDD 264 (332)
Q Consensus 185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (332)
|.+.+.++|.+... ..++.-++.++.|+|++|+++.+. .+..+++|++||++.|.+..++--....+. |..|.+++
T Consensus 166 L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 44445555555444 334444555555555555555554 245555555555555555555332222222 55555555
Q ss_pred CCCCCcCcccccCCCCccEEEcCCCcCCccCc-hhcCCCCCCCEEEccCCCCC
Q psy8550 265 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLT 316 (332)
Q Consensus 265 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~ 316 (332)
|.++.+-. +.++.+|+.||+++|-+.+... ..++.+..|+.|+|.||.+-
T Consensus 242 N~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 55555442 4455555555555555543322 22344455555555555553
No 42
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.62 E-value=1.1e-07 Score=74.14 Aligned_cols=124 Identities=15% Similarity=0.331 Sum_probs=49.2
Q ss_pred cccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCC
Q psy8550 201 KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM 280 (332)
Q Consensus 201 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 280 (332)
.+|.++.+|+.+.+.. .+..+....|..+.+++.+.+.++ +..+....|.++++++.+.+.+ .+..++...|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3444444444444442 344444444555545555555443 4444444555554555555543 444444445555566
Q ss_pred ccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcc
Q psy8550 281 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLH 330 (332)
Q Consensus 281 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~ 330 (332)
++.+.+..+ +..+...+|.++ .++.+.+.. .++.++...|..++.|+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 666666544 555555566665 666666664 56666666676666654
No 43
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.55 E-value=2.9e-07 Score=71.85 Aligned_cols=123 Identities=21% Similarity=0.373 Sum_probs=44.2
Q ss_pred CCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCC
Q psy8550 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA 256 (332)
Q Consensus 177 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (332)
.+|.+.++|+.+.+.. .+..+...+|.++.+|+.+.+..+ +..++...|..+.+++.+.+.+ .+..+....|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4444444455554442 344444444544444555555442 4444444444444455555543 344444444444555
Q ss_pred CcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCC
Q psy8550 257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305 (332)
Q Consensus 257 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 305 (332)
++.+.+..+ +..+....|... +++.+.+.. .+..+...+|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 555555443 444444445444 555555443 4444444455544443
No 44
>KOG4658|consensus
Probab=98.51 E-value=1.5e-07 Score=95.49 Aligned_cols=184 Identities=23% Similarity=0.250 Sum_probs=108.9
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEeecCc--CcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEE
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQ--LVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLN 213 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 213 (332)
..++.+.+.+|.+..++..... ++|++|-+..|. +..++...|..++.|++||+++|.--+-.|..++++-+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 4566666666666665543332 367777777775 5666655677777777777776644333466777777777777
Q ss_pred ccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCC--CcCcccccCCCCccEEEcC----
Q psy8550 214 LRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR--SVPTPSFIYLGMLAELRVG---- 287 (332)
Q Consensus 214 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~---- 287 (332)
++++.+..+|.+ ++++..|.+|++..+.-....+.....+.+|++|.+-..... ...-..+..+.+|+.+...
T Consensus 602 L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 602 LSDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred ccCCCccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence 777777777766 377777777777766544444555555677777766543311 1111112223333332222
Q ss_pred ----------------------CCcCCccCchhcCCCCCCCEEEccCCCCCCccccc
Q psy8550 288 ----------------------LNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHS 322 (332)
Q Consensus 288 ----------------------~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 322 (332)
++.....+ ..+..+.+|+.|.+.++.+..+....
T Consensus 681 ~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~-~~~~~l~~L~~L~i~~~~~~e~~~~~ 736 (889)
T KOG4658|consen 681 LLLEDLLGMTRLRSLLQSLSIEGCSKRTLI-SSLGSLGNLEELSILDCGISEIVIEW 736 (889)
T ss_pred HhHhhhhhhHHHHHHhHhhhhcccccceee-cccccccCcceEEEEcCCCchhhccc
Confidence 22222222 25677888888988888887554433
No 45
>KOG1859|consensus
Probab=98.49 E-value=7.4e-10 Score=105.70 Aligned_cols=127 Identities=31% Similarity=0.473 Sum_probs=66.5
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccC
Q psy8550 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRG 216 (332)
Q Consensus 137 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 216 (332)
.|...+++.|.+..+..++.-++.++.|++++|+++... .+..+++|++|||+.|++..++--...++ +|+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence 344445555555555555555666666666666655543 44555666666666666555533222222 366666666
Q ss_pred CCCCCCCccccCCCCCCcEeeccCCCCcccCh-hhcCCCCCCcEEeCCCCCCC
Q psy8550 217 NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLR 268 (332)
Q Consensus 217 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 268 (332)
|.++++-. +.++.+|+.||+++|-+.+... ..+..+..|+.|.|.+|.+.
T Consensus 242 N~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 66555543 3455566666666654443211 11333445555555555543
No 46
>KOG4579|consensus
Probab=98.39 E-value=1.8e-08 Score=77.56 Aligned_cols=113 Identities=27% Similarity=0.319 Sum_probs=81.1
Q ss_pred CccEEEeecCCCccchh---hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEE
Q psy8550 137 SIQRLVLKYNRIKTVDS---AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLN 213 (332)
Q Consensus 137 ~L~~L~l~~~~l~~l~~---~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 213 (332)
.+..++|+.+.+-.++. .+.....|+..++++|.+...++..-...+.++.|++++|.++.+ |+.+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcc
Confidence 34566777777665555 345556677778888888877755445566788888888888887 45588888888888
Q ss_pred ccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhc
Q psy8550 214 LRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF 251 (332)
Q Consensus 214 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 251 (332)
++.|.+...|.-+ ..+.++..|+..+|.+..++-+.|
T Consensus 107 l~~N~l~~~p~vi-~~L~~l~~Lds~~na~~eid~dl~ 143 (177)
T KOG4579|consen 107 LRFNPLNAEPRVI-APLIKLDMLDSPENARAEIDVDLF 143 (177)
T ss_pred cccCccccchHHH-HHHHhHHHhcCCCCccccCcHHHh
Confidence 8888888777654 347778888888887777755533
No 47
>KOG1644|consensus
Probab=98.32 E-value=1.2e-06 Score=72.02 Aligned_cols=86 Identities=22% Similarity=0.178 Sum_probs=35.8
Q ss_pred cCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccCh-hhcCCCCCCcEEeCCCCCCCCcCc---ccccCC
Q psy8550 203 FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVPT---PSFIYL 278 (332)
Q Consensus 203 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l 278 (332)
|..++.|.+|.+++|+++.+.+..-..+++|..|.+.+|.+..+.. ..+..++.|+.|.+-+|.++.... ..+..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 3344444444444444444444333333444444444444443321 123344444444444444433221 123344
Q ss_pred CCccEEEcCC
Q psy8550 279 GMLAELRVGL 288 (332)
Q Consensus 279 ~~L~~L~L~~ 288 (332)
++|+.||.++
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 4455554443
No 48
>KOG1644|consensus
Probab=98.31 E-value=1.1e-06 Score=72.13 Aligned_cols=106 Identities=25% Similarity=0.257 Sum_probs=87.4
Q ss_pred CCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCc-ccccCCCCccEEE
Q psy8550 207 KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELR 285 (332)
Q Consensus 207 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 285 (332)
.....+||++|.+..++. |..++.|++|.+++|.|+.+.|..-.-+++|+.|.+.+|.+..+.. ..+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 467788999999887766 7889999999999999999988766667889999999998876442 2367789999999
Q ss_pred cCCCcCCccC---chhcCCCCCCCEEEccCCC
Q psy8550 286 VGLNVFTTLA---DGAFNGLGRLSALDLRGAG 314 (332)
Q Consensus 286 L~~n~l~~~~---~~~~~~l~~L~~L~Ls~n~ 314 (332)
+-+|+++... ...+..+++|++||+++-+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9999988653 2456789999999998654
No 49
>KOG4579|consensus
Probab=98.31 E-value=4.1e-08 Score=75.64 Aligned_cols=112 Identities=22% Similarity=0.228 Sum_probs=74.4
Q ss_pred CCcEEEcCCCcccccC--ccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEe
Q psy8550 184 KLVELQLNHNKLSSVN--NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILY 261 (332)
Q Consensus 184 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (332)
.+..++++.|++..+. +..+.+...|+..+|++|.+..+|+..-...+.++.+++++|++.+++.+ +..++.|+.++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence 4556677777666552 12233445566677788887777776545556677777777777777444 77777777777
Q ss_pred CCCCCCCCcCcccccCCCCccEEEcCCCcCCccCch
Q psy8550 262 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 297 (332)
Q Consensus 262 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 297 (332)
++.|.+...|. .+..+.++..|+..+|.+..++.+
T Consensus 107 l~~N~l~~~p~-vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPR-VIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchH-HHHHHHhHHHhcCCCCccccCcHH
Confidence 77777776665 344467777777777777666654
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=1.2e-06 Score=54.53 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=26.0
Q ss_pred CccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccc
Q psy8550 280 MLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMG 320 (332)
Q Consensus 280 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~ 320 (332)
+|++|++++|+++.+++ .++++++|++|++++|+++++++
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEGG
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCcC
Confidence 56777777777776655 46777777777777777776543
No 51
>KOG2120|consensus
Probab=98.26 E-value=2.7e-08 Score=86.14 Aligned_cols=175 Identities=21% Similarity=0.201 Sum_probs=123.2
Q ss_pred CCccEEEeecCCCc--cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC-cccccC-ccccCCCCCCCE
Q psy8550 136 PSIQRLVLKYNRIK--TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN-KLSSVN-NKTFIGLKSLKV 211 (332)
Q Consensus 136 ~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~ 211 (332)
..++.+||++..|+ .+-..++.+.+|+.|.+.++++..-....++.-.+|+.|+++.+ .++... .-.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 56899999998888 55557788999999999999988766577888899999999865 343321 123567889999
Q ss_pred EEccCCCCCCCCcc-cc-CCCCCCcEeeccCCCC----cccChhhcCCCCCCcEEeCCCCC-CCCcCcccccCCCCccEE
Q psy8550 212 LNLRGNFLEDLPDR-LF-APLSHLEELDLGQNRI----SRIDQACFEGLTALRILYLDDNQ-LRSVPTPSFIYLGMLAEL 284 (332)
Q Consensus 212 L~L~~n~l~~~~~~-~~-~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 284 (332)
|+++.|.+..-.-. +. .--++|+.|+++|+.- ..+ ......++.|.+|+|++|. ++.-....|..++.|++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 99999876522111 01 1125788888888632 122 2334578899999999874 443333456678899999
Q ss_pred EcCCCcCCccCch---hcCCCCCCCEEEccCC
Q psy8550 285 RVGLNVFTTLADG---AFNGLGRLSALDLRGA 313 (332)
Q Consensus 285 ~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n 313 (332)
.++.|. +++|. .+...++|.+||+.++
T Consensus 344 SlsRCY--~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCY--DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence 998884 34443 3567788999998876
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=2e-06 Score=53.54 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=25.1
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccC
Q psy8550 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP 175 (332)
Q Consensus 137 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~ 175 (332)
+|++|++++|+|+.+|+.++++++|++|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566777777777777666677777777777777666553
No 53
>KOG2982|consensus
Probab=98.15 E-value=1.2e-06 Score=76.11 Aligned_cols=83 Identities=24% Similarity=0.294 Sum_probs=60.8
Q ss_pred CCccEEEeecCCCc---cchhhhcCCCCCcEEEeecCcCcccCCCCC-CCCCCCcEEEcCCCcccccCc-cccCCCCCCC
Q psy8550 136 PSIQRLVLKYNRIK---TVDSAIQFYSSLQHVDLSHNQLVNIPIRGF-EPQEKLVELQLNHNKLSSVNN-KTFIGLKSLK 210 (332)
Q Consensus 136 ~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ 210 (332)
..++++||.+|.|+ ++...+.+++.|+.|+++.|++.... ... ..+.+|++|-+.+..+..-.. ..+..++.++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 67889999999887 56567789999999999999887644 233 356789999998876654322 2345577788
Q ss_pred EEEccCCCC
Q psy8550 211 VLNLRGNFL 219 (332)
Q Consensus 211 ~L~L~~n~l 219 (332)
.|+++.|.+
T Consensus 150 elHmS~N~~ 158 (418)
T KOG2982|consen 150 ELHMSDNSL 158 (418)
T ss_pred hhhhccchh
Confidence 888888744
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=4.6e-05 Score=70.34 Aligned_cols=126 Identities=17% Similarity=0.297 Sum_probs=65.7
Q ss_pred eEEecCCCccccCCCCCCCccEEEeec-CCCccchhhhcCCCCCcEEEeecC-cCcccCCCCCCCCCCCcEEEcCCCccc
Q psy8550 119 VVTCKEANLDVIPITLNPSIQRLVLKY-NRIKTVDSAIQFYSSLQHVDLSHN-QLVNIPIRGFEPQEKLVELQLNHNKLS 196 (332)
Q Consensus 119 ~~~c~~~~l~~lp~~~~~~L~~L~l~~-~~l~~l~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 196 (332)
.++..++.++.+| .+|.+|+.|.+++ +.++.+|..+ ..+|+.|++++| .+..++ .+|+.|++..+...
T Consensus 56 ~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~L~L~~n~~~ 125 (426)
T PRK15386 56 RLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESVRSLEIKGSATD 125 (426)
T ss_pred EEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------cccceEEeCCCCCc
Confidence 4566666777777 5777777777776 3355665543 246777777776 444433 24666666554432
Q ss_pred ccCccccCCC-CCCCEEEccCCCCC---CCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCC
Q psy8550 197 SVNNKTFIGL-KSLKVLNLRGNFLE---DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265 (332)
Q Consensus 197 ~~~~~~~~~l-~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 265 (332)
.+ ..+ .+|+.|.+.++... .++ .. -..+|++|++++|....++ ..+. .+|+.|.++.+
T Consensus 126 ~L-----~~LPssLk~L~I~~~n~~~~~~lp-~~--LPsSLk~L~Is~c~~i~LP-~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 126 SI-----KNVPNGLTSLSINSYNPENQARID-NL--ISPSLKTLSLTGCSNIILP-EKLP--ESLQSITLHIE 187 (426)
T ss_pred cc-----ccCcchHhheeccccccccccccc-cc--cCCcccEEEecCCCcccCc-cccc--ccCcEEEeccc
Confidence 22 112 24555555432211 111 11 1245667777666554332 2222 36666666554
No 55
>KOG4658|consensus
Probab=98.03 E-value=4.6e-06 Score=84.81 Aligned_cols=162 Identities=25% Similarity=0.334 Sum_probs=118.4
Q ss_pred CCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCc--ccccCccccCCCCCCCEEEccCCC-CCCCC
Q psy8550 147 RIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK--LSSVNNKTFIGLKSLKVLNLRGNF-LEDLP 223 (332)
Q Consensus 147 ~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 223 (332)
...+.|. .......++..+.+|.+..+... ...+.|++|-+..|. +..+.++.|..++.|+.|||++|. +.++|
T Consensus 512 ~~~~~~~-~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 512 GLSEIPQ-VKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred Ccccccc-ccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 3444443 23346778888888888777632 234479899888885 777777778899999999999874 56777
Q ss_pred ccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCc--CCccCchhcCC
Q psy8550 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV--FTTLADGAFNG 301 (332)
Q Consensus 224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~ 301 (332)
.++ +.+-+|++|++++..+..+ |..++++..|.+|++..+.-...+++....+.+|++|.+..-. .+...-..+.+
T Consensus 589 ~~I-~~Li~LryL~L~~t~I~~L-P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~ 666 (889)
T KOG4658|consen 589 SSI-GELVHLRYLDLSDTGISHL-PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELEN 666 (889)
T ss_pred hHH-hhhhhhhcccccCCCcccc-chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhc
Confidence 764 8899999999999999988 5558899999999999887665556677778999999887654 22333344556
Q ss_pred CCCCCEEEccCC
Q psy8550 302 LGRLSALDLRGA 313 (332)
Q Consensus 302 l~~L~~L~Ls~n 313 (332)
+.+|+.+.....
T Consensus 667 Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 667 LEHLENLSITIS 678 (889)
T ss_pred ccchhhheeecc
Confidence 666666666443
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=3.8e-06 Score=72.14 Aligned_cols=181 Identities=20% Similarity=0.192 Sum_probs=80.4
Q ss_pred CCccEEEeecCCCc-----cchhhhcCCCCCcEEEeecCcCccc----------CCCCCCCCCCCcEEEcCCCcccccCc
Q psy8550 136 PSIQRLVLKYNRIK-----TVDSAIQFYSSLQHVDLSHNQLVNI----------PIRGFEPQEKLVELQLNHNKLSSVNN 200 (332)
Q Consensus 136 ~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~l~~~----------~~~~~~~l~~L~~L~l~~n~l~~~~~ 200 (332)
..++.++|++|.|. .+..-+++-.+|+..+++.-..... ...++.++++|++++++.|.+..-.|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 44556666666655 2222344445555555544221110 01234445666666666665544333
Q ss_pred cc----cCCCCCCCEEEccCCCCCCCCcccc-------------CCCCCCcEeeccCCCCcccChh----hcCCCCCCcE
Q psy8550 201 KT----FIGLKSLKVLNLRGNFLEDLPDRLF-------------APLSHLEELDLGQNRISRIDQA----CFEGLTALRI 259 (332)
Q Consensus 201 ~~----~~~l~~L~~L~L~~n~l~~~~~~~~-------------~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~ 259 (332)
+. +++-..|.+|.|++|.+.-+..+-+ .+-+.|+++++..|++..-+.. .+..-..|++
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 22 3344556666666665543322111 2234555666665555433221 1222234555
Q ss_pred EeCCCCCCCCcCc-----ccccCCCCccEEEcCCCcCCccC----chhcCCCCCCCEEEccCCCCC
Q psy8550 260 LYLDDNQLRSVPT-----PSFIYLGMLAELRVGLNVFTTLA----DGAFNGLGRLSALDLRGAGLT 316 (332)
Q Consensus 260 L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~ 316 (332)
+.+..|.|..-.- ..+..+.+|+.|++++|-++-.. ..++...+.|+.|.+.+|-++
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 5555555542110 11123445555555555554221 122333334555555555443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=6.8e-05 Score=69.28 Aligned_cols=133 Identities=17% Similarity=0.280 Sum_probs=84.3
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEeecCc-CcccCCCCCCCCCCCcEEEcCCC-cccccCccccCCCCCCCEEE
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQ-LVNIPIRGFEPQEKLVELQLNHN-KLSSVNNKTFIGLKSLKVLN 213 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 213 (332)
.+++.|++++|.++.+|. -..+|++|.+++|. ++.++ +.+ .++|++|++++| .+..+ | .+|+.|+
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~sL-P------~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISGL-P------ESVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCccccccc-c------cccceEE
Confidence 678899999998888872 23469999998864 44443 333 358999999887 55544 2 3577788
Q ss_pred ccCCCCCCCCccccCCCCCCcEeeccCCC-Cccc-ChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCc
Q psy8550 214 LRGNFLEDLPDRLFAPLSHLEELDLGQNR-ISRI-DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV 290 (332)
Q Consensus 214 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 290 (332)
+.++....++. + .++|+.|.+.++. .... .+..+ .++|++|++++|.....|. .+ ..+|+.|+++.|.
T Consensus 119 L~~n~~~~L~~--L--PssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP~-~L--P~SLk~L~ls~n~ 188 (426)
T PRK15386 119 IKGSATDSIKN--V--PNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILPE-KL--PESLQSITLHIEQ 188 (426)
T ss_pred eCCCCCccccc--C--cchHhheecccccccccccccccc--CCcccEEEecCCCcccCcc-cc--cccCcEEEecccc
Confidence 87766543321 1 1346677765432 1111 01111 2579999999888765553 22 3688999988764
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.84 E-value=7.2e-06 Score=70.48 Aligned_cols=238 Identities=18% Similarity=0.137 Sum_probs=151.2
Q ss_pred hhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCC----CccccCCCC--
Q psy8550 61 FEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEA----NLDVIPITL-- 134 (332)
Q Consensus 61 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~----~l~~lp~~~-- 134 (332)
..+..|+.+..+++++|.+..-........+. ....++++..++. ....+|..+
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia--------------------~~~~L~vvnfsd~ftgr~kde~~~~L~~ 83 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIA--------------------NVRNLRVVNFSDAFTGRDKDELYSNLVM 83 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHh--------------------hhcceeEeehhhhhhcccHHHHHHHHHH
Confidence 34555778888999999887764332211111 1223444444322 222333322
Q ss_pred -------CCCccEEEeecCCCc-cch----hhhcCCCCCcEEEeecCcCcccCCCCC-------------CCCCCCcEEE
Q psy8550 135 -------NPSIQRLVLKYNRIK-TVD----SAIQFYSSLQHVDLSHNQLVNIPIRGF-------------EPQEKLVELQ 189 (332)
Q Consensus 135 -------~~~L~~L~l~~~~l~-~l~----~~~~~l~~L~~L~l~~~~l~~~~~~~~-------------~~l~~L~~L~ 189 (332)
.|.++.++|++|.+. ..| ..+++-+.|.+|.+++|.+-.+...-+ ..-+.|+++.
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 278999999999876 333 367888999999999998775543222 3357899999
Q ss_pred cCCCcccccCcc----ccCCCCCCCEEEccCCCCCCC--Cc---cccCCCCCCcEeeccCCCCcccCh----hhcCCCCC
Q psy8550 190 LNHNKLSSVNNK----TFIGLKSLKVLNLRGNFLEDL--PD---RLFAPLSHLEELDLGQNRISRIDQ----ACFEGLTA 256 (332)
Q Consensus 190 l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~--~~---~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~ 256 (332)
..+|++..-+.. .+..-.+|+.+.+..|.+.-- .. .-+.-+.+|+.||+..|.++.... ..+..++.
T Consensus 164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 999987654321 233335788999998887522 11 012346789999999998875433 44566777
Q ss_pred CcEEeCCCCCCCCcCcccc------cCCCCccEEEcCCCcCCccC-c------hhcCCCCCCCEEEccCCCCCCc
Q psy8550 257 LRILYLDDNQLRSVPTPSF------IYLGMLAELRVGLNVFTTLA-D------GAFNGLGRLSALDLRGAGLTNM 318 (332)
Q Consensus 257 L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~-~------~~~~~l~~L~~L~Ls~n~l~~l 318 (332)
|+.|.+..|-++.-...++ ...++|..|...+|...+-. . ..-.+++-|..|.++||++...
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 8999999998875432211 13477888888888766421 1 1124567788888888888754
No 59
>KOG2982|consensus
Probab=97.66 E-value=2.2e-05 Score=68.37 Aligned_cols=81 Identities=16% Similarity=0.157 Sum_probs=45.0
Q ss_pred CCCcEeeccCCCCcccCh-hhcCCCCCCcEEeCCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCc------hhcCCC
Q psy8550 231 SHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLAD------GAFNGL 302 (332)
Q Consensus 231 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l 302 (332)
+++..+.+..|.+..... ..+..++.+..|+|+.|++.++.. .++.+++.|+.|.+++|++..... -.++++
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL 278 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL 278 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence 455566666665554432 223445555566777776665432 345566777777777776654322 124566
Q ss_pred CCCCEEEcc
Q psy8550 303 GRLSALDLR 311 (332)
Q Consensus 303 ~~L~~L~Ls 311 (332)
++++.|+=+
T Consensus 279 ~~v~vLNGs 287 (418)
T KOG2982|consen 279 TKVQVLNGS 287 (418)
T ss_pred cceEEecCc
Confidence 666665533
No 60
>KOG3665|consensus
Probab=97.53 E-value=4.2e-05 Score=76.03 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=51.8
Q ss_pred CCCCcEEEcCCCcccccC-ccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCccc-ChhhcCCCCCCcE
Q psy8550 182 QEKLVELQLNHNKLSSVN-NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI-DQACFEGLTALRI 259 (332)
Q Consensus 182 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 259 (332)
+|+|+.|.+.+-.+..-. -....++++|..||+++++++.+ ..++.+++|+.|.+.+=.+..- .-..+-++++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 455555555543332210 12233455555556665555555 1235555555555554444321 1122334566666
Q ss_pred EeCCCCCCCCcCc------ccccCCCCccEEEcCCCcCCc
Q psy8550 260 LYLDDNQLRSVPT------PSFIYLGMLAELRVGLNVFTT 293 (332)
Q Consensus 260 L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~ 293 (332)
||+|.......+. +.-..++.|+.||.+++.+.+
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 6665544333221 111235666666666666654
No 61
>KOG3665|consensus
Probab=97.42 E-value=0.00012 Score=72.88 Aligned_cols=132 Identities=22% Similarity=0.259 Sum_probs=93.3
Q ss_pred CCCcEEEcCCCccccc-CccccC-CCCCCCEEEccCCCCCCCC-ccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcE
Q psy8550 183 EKLVELQLNHNKLSSV-NNKTFI-GLKSLKVLNLRGNFLEDLP-DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRI 259 (332)
Q Consensus 183 ~~L~~L~l~~n~l~~~-~~~~~~-~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (332)
.+|+.|++++.....- -+..++ -+|+|+.|.+++=.+..-. .....++++|..||++++.++.+ ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5788888887543221 122233 3789999999886654322 23347789999999999999987 45889999999
Q ss_pred EeCCCCCCCCcC-cccccCCCCccEEEcCCCcCCccC---c---hhcCCCCCCCEEEccCCCCC
Q psy8550 260 LYLDDNQLRSVP-TPSFIYLGMLAELRVGLNVFTTLA---D---GAFNGLGRLSALDLRGAGLT 316 (332)
Q Consensus 260 L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~---~---~~~~~l~~L~~L~Ls~n~l~ 316 (332)
|.+.+=.+.... -..+-.+++|+.||+|..+..... . +.-..+++|+.||.|++.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 988775555321 124557899999999987665433 1 23456899999999988765
No 62
>KOG2739|consensus
Probab=97.40 E-value=6.2e-05 Score=64.43 Aligned_cols=103 Identities=28% Similarity=0.355 Sum_probs=62.7
Q ss_pred cCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC--cccccCccccCCCCCCCEEEccCCCCCC---CCccccCCC
Q psy8550 156 QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN--KLSSVNNKTFIGLKSLKVLNLRGNFLED---LPDRLFAPL 230 (332)
Q Consensus 156 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l 230 (332)
..+..|+.|.+.+..++.+. .|..+++|++|.++.| ++.+-.+.....+++|+++++++|++.. +.+ +..+
T Consensus 40 d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l 115 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKEL 115 (260)
T ss_pred ccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhh
Confidence 34455666666666666553 4566778888888877 4443323333455788888888887663 223 3556
Q ss_pred CCCcEeeccCCCCcccCh---hhcCCCCCCcEEeC
Q psy8550 231 SHLEELDLGQNRISRIDQ---ACFEGLTALRILYL 262 (332)
Q Consensus 231 ~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L 262 (332)
.+|..|++.+|..+.... ..|.-+++|+.|+-
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 677778887776654322 33455566666553
No 63
>KOG2123|consensus
Probab=97.36 E-value=4.7e-06 Score=71.78 Aligned_cols=79 Identities=29% Similarity=0.296 Sum_probs=34.8
Q ss_pred CCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCc-cccCCCCCCcEeec
Q psy8550 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEELDL 238 (332)
Q Consensus 160 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L 238 (332)
+.+.|++-+|.+..|. ....|+.|++|.|+-|+|+.+.| |..+++|+.|+|..|.|..+.+ ..+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3444444444444432 22334444444444444444433 3344444444444444444432 11244445555555
Q ss_pred cCCC
Q psy8550 239 GQNR 242 (332)
Q Consensus 239 ~~n~ 242 (332)
..|.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 4443
No 64
>KOG2120|consensus
Probab=97.34 E-value=1.4e-05 Score=69.69 Aligned_cols=155 Identities=20% Similarity=0.103 Sum_probs=107.3
Q ss_pred CCccEEEeecCCCc-cchhhhcCCCCCcEEEeecC-cCcccCC-CCCCCCCCCcEEEcCCCcccccCc-cccCC-CCCCC
Q psy8550 136 PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHN-QLVNIPI-RGFEPQEKLVELQLNHNKLSSVNN-KTFIG-LKSLK 210 (332)
Q Consensus 136 ~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~-l~~L~ 210 (332)
..++.|.+.++.+. .+-..+++..+|+.|+++.+ .+++-.. -.+..++.|..|++++|.+....- ..+.+ -.+|+
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 67899999999988 56678999999999999997 4554221 235678999999999987654221 11222 25789
Q ss_pred EEEccCCCCC---CCCccccCCCCCCcEeeccCCC-CcccChhhcCCCCCCcEEeCCCCCCCCcCcc---cccCCCCccE
Q psy8550 211 VLNLRGNFLE---DLPDRLFAPLSHLEELDLGQNR-ISRIDQACFEGLTALRILYLDDNQLRSVPTP---SFIYLGMLAE 283 (332)
Q Consensus 211 ~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~ 283 (332)
.|+++|+.=. .-.......+++|..|||++|- ++.--...|-.++.|++|.++.|.. ++|. .+...++|.+
T Consensus 290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVY 367 (419)
T ss_pred hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEE
Confidence 9999987421 1111223668999999999874 3322123456788999999998854 4443 3567789999
Q ss_pred EEcCCCcCC
Q psy8550 284 LRVGLNVFT 292 (332)
Q Consensus 284 L~L~~n~l~ 292 (332)
|+.-|+-=.
T Consensus 368 Ldv~g~vsd 376 (419)
T KOG2120|consen 368 LDVFGCVSD 376 (419)
T ss_pred EEeccccCc
Confidence 998876433
No 65
>KOG2123|consensus
Probab=97.29 E-value=1.2e-05 Score=69.35 Aligned_cols=100 Identities=26% Similarity=0.317 Sum_probs=73.3
Q ss_pred CCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccCh-hhcCCCCCCcEE
Q psy8550 182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRIL 260 (332)
Q Consensus 182 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 260 (332)
+.+.+.|++.+|.+..+. ...+|+.|+.|.|+-|+++.+.+ +..+++|++|+|..|.|.++.. .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 556778888888887763 35578888888888888888877 5778888888888888877643 456778888888
Q ss_pred eCCCCCCCCcCc-----ccccCCCCccEEE
Q psy8550 261 YLDDNQLRSVPT-----PSFIYLGMLAELR 285 (332)
Q Consensus 261 ~L~~n~l~~~~~-----~~~~~l~~L~~L~ 285 (332)
-|..|.-.+-.+ ..+..+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888887665433 2344566666665
No 66
>KOG2739|consensus
Probab=97.23 E-value=0.00017 Score=61.71 Aligned_cols=106 Identities=27% Similarity=0.297 Sum_probs=65.8
Q ss_pred CCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCC--CCcccChhhcCCCCCCcEEeCCCCCCCCcCc-ccccCCCCcc
Q psy8550 206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN--RISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLA 282 (332)
Q Consensus 206 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 282 (332)
+..|+.+++.+..++.+.. |..+++|+.|.++.| ++..-.+-....+++|+++++++|++..+.. ..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 4566666677666666544 566788888888888 3332112223345888888888888775321 1244566777
Q ss_pred EEEcCCCcCCccCc---hhcCCCCCCCEEEccCC
Q psy8550 283 ELRVGLNVFTTLAD---GAFNGLGRLSALDLRGA 313 (332)
Q Consensus 283 ~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n 313 (332)
.|++.+|..+..-. ..|.-+++|.+||-.+.
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 88888887665432 34555666666665444
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.33 E-value=0.0012 Score=34.24 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=10.4
Q ss_pred CCEEEccCCCCCCccccccc
Q psy8550 305 LSALDLRGAGLTNMMGHSMA 324 (332)
Q Consensus 305 L~~L~Ls~n~l~~l~~~~~~ 324 (332)
|++||+++|+++.+|++ |+
T Consensus 2 L~~Ldls~n~l~~ip~~-~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS-FS 20 (22)
T ss_dssp ESEEEETSSEESEEGTT-TT
T ss_pred ccEEECCCCcCEeCChh-hc
Confidence 45566666655555544 44
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.91 E-value=0.0066 Score=32.78 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=18.9
Q ss_pred CCCCCEEEccCCCCCCccccccc
Q psy8550 302 LGRLSALDLRGAGLTNMMGHSMA 324 (332)
Q Consensus 302 l~~L~~L~Ls~n~l~~l~~~~~~ 324 (332)
+++|+.|+|++|+|+.+|+.+|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 45788888888888888888876
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.91 E-value=0.0066 Score=32.78 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=18.9
Q ss_pred CCCCCEEEccCCCCCCccccccc
Q psy8550 302 LGRLSALDLRGAGLTNMMGHSMA 324 (332)
Q Consensus 302 l~~L~~L~Ls~n~l~~l~~~~~~ 324 (332)
+++|+.|+|++|+|+.+|+.+|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 45788888888888888888876
No 70
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=95.82 E-value=0.012 Score=33.89 Aligned_cols=31 Identities=32% Similarity=0.877 Sum_probs=26.5
Q ss_pred CCCCCCcccCCCceEEecCCCccccCCCCCCCc
Q psy8550 106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSI 138 (332)
Q Consensus 106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L 138 (332)
.||..|.|.. ..++|.+.++..+|.+++.+.
T Consensus 1 ~CP~~C~C~~--~~V~C~~~~L~~vP~~iP~~t 31 (33)
T smart00013 1 ACPAPCNCSG--TAVDCSGRGLTEVPLDLPPDT 31 (33)
T ss_pred CcCCCCEECC--CEeEeCCCCcCccCCCCCccc
Confidence 4999999994 479999999999999887553
No 71
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=95.70 E-value=0.0086 Score=33.07 Aligned_cols=28 Identities=32% Similarity=0.791 Sum_probs=21.7
Q ss_pred CCCCCCcccCCCceEEecCCCccccCCCCC
Q psy8550 106 FCPPDCDCNDETLVVTCKEANLDVIPITLN 135 (332)
Q Consensus 106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~ 135 (332)
.||..|.|... .++|++.+++++|.+++
T Consensus 1 ~CP~~C~C~~~--~V~C~~~~L~~vP~~lP 28 (28)
T PF01462_consen 1 ACPRPCTCSGL--TVDCSGRGLTAVPSDLP 28 (28)
T ss_dssp SSETTSEEETT--EEEETTSS-SSS-STS-
T ss_pred CcCCCCEecCC--EeECCCCCCCccCCCCc
Confidence 48999999944 79999999999998764
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.67 E-value=0.0079 Score=28.97 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=8.3
Q ss_pred CCCEEEccCCCCCCcc
Q psy8550 304 RLSALDLRGAGLTNMM 319 (332)
Q Consensus 304 ~L~~L~Ls~n~l~~l~ 319 (332)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5677777777776654
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.36 E-value=0.0079 Score=31.12 Aligned_cols=15 Identities=53% Similarity=0.795 Sum_probs=7.2
Q ss_pred CcEEEeecCcCcccC
Q psy8550 161 LQHVDLSHNQLVNIP 175 (332)
Q Consensus 161 L~~L~l~~~~l~~~~ 175 (332)
|++|++++|+++.++
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 444555555544444
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.52 E-value=0.033 Score=29.94 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=11.4
Q ss_pred CCCCEEEccCCCCCCCCcccc
Q psy8550 207 KSLKVLNLRGNFLEDLPDRLF 227 (332)
Q Consensus 207 ~~L~~L~L~~n~l~~~~~~~~ 227 (332)
++|++|+|++|.++.+|+++|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555555544
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.52 E-value=0.033 Score=29.94 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=11.4
Q ss_pred CCCCEEEccCCCCCCCCcccc
Q psy8550 207 KSLKVLNLRGNFLEDLPDRLF 227 (332)
Q Consensus 207 ~~L~~L~L~~n~l~~~~~~~~ 227 (332)
++|++|+|++|.++.+|+++|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555555544
No 76
>KOG1947|consensus
Probab=94.48 E-value=0.0051 Score=58.80 Aligned_cols=107 Identities=23% Similarity=0.265 Sum_probs=49.0
Q ss_pred CCccEEEeecCC-Ccc--chhhhcCCCCCcEEEeecC-cCcccC----CCCCCCCCCCcEEEcCCCc-ccccCccccCC-
Q psy8550 136 PSIQRLVLKYNR-IKT--VDSAIQFYSSLQHVDLSHN-QLVNIP----IRGFEPQEKLVELQLNHNK-LSSVNNKTFIG- 205 (332)
Q Consensus 136 ~~L~~L~l~~~~-l~~--l~~~~~~l~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~- 205 (332)
+.++.+.+.++. +.. +-+.....++|+.|+++++ ...... ......+++|+.|+++++. ++...-..+..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 455555555442 332 3344555666666666652 111111 0122334566666666554 33322222222
Q ss_pred CCCCCEEEccCCC-CCCCC-ccccCCCCCCcEeeccCCC
Q psy8550 206 LKSLKVLNLRGNF-LEDLP-DRLFAPLSHLEELDLGQNR 242 (332)
Q Consensus 206 l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~ 242 (332)
+++|+.|.+.++. ++... ......++.|++|+++++.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4566666655554 33211 1112345556666666553
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.12 E-value=0.034 Score=26.72 Aligned_cols=12 Identities=42% Similarity=0.600 Sum_probs=3.8
Q ss_pred CCEEEccCCCCC
Q psy8550 209 LKVLNLRGNFLE 220 (332)
Q Consensus 209 L~~L~L~~n~l~ 220 (332)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 344444444443
No 78
>KOG4308|consensus
Probab=93.70 E-value=0.00057 Score=65.18 Aligned_cols=180 Identities=27% Similarity=0.292 Sum_probs=113.6
Q ss_pred ccEEEeecCCCc-----cchhhhcCCCCCcEEEeecCcCcccCC----CCCCCC-CCCcEEEcCCCcccccC----cccc
Q psy8550 138 IQRLVLKYNRIK-----TVDSAIQFYSSLQHVDLSHNQLVNIPI----RGFEPQ-EKLVELQLNHNKLSSVN----NKTF 203 (332)
Q Consensus 138 L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~l~~~~~----~~~~~l-~~L~~L~l~~n~l~~~~----~~~~ 203 (332)
+..+.+.+|.+. .+-..+.....|+.|++++|.+..... ..+... ..+++|++..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 566777777665 334466777888888888887763221 122222 55677777777666542 3445
Q ss_pred CCCCCCCEEEccCCCCCCC----Cccc----cCCCCCCcEeeccCCCCcccC----hhhcCCCCC-CcEEeCCCCCCCCc
Q psy8550 204 IGLKSLKVLNLRGNFLEDL----PDRL----FAPLSHLEELDLGQNRISRID----QACFEGLTA-LRILYLDDNQLRSV 270 (332)
Q Consensus 204 ~~l~~L~~L~L~~n~l~~~----~~~~----~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~-L~~L~L~~n~l~~~ 270 (332)
.....++.++++.|.+... .+.. +....++++|.+.+|.++... ...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5567788888888876421 1111 224667888888888776322 133444555 66688888888754
Q ss_pred Cc----ccccCC-CCccEEEcCCCcCCccC----chhcCCCCCCCEEEccCCCCCC
Q psy8550 271 PT----PSFIYL-GMLAELRVGLNVFTTLA----DGAFNGLGRLSALDLRGAGLTN 317 (332)
Q Consensus 271 ~~----~~~~~l-~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~ 317 (332)
.. ..+..+ ..++.++++.|.++... ...+..+..++.+.+++|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 21 133344 56788899999888543 3455667788888888887754
No 79
>KOG3864|consensus
Probab=90.77 E-value=0.033 Score=46.30 Aligned_cols=33 Identities=21% Similarity=0.090 Sum_probs=15.2
Q ss_pred CCccEEEcCCC-cCCccCchhcCCCCCCCEEEcc
Q psy8550 279 GMLAELRVGLN-VFTTLADGAFNGLGRLSALDLR 311 (332)
Q Consensus 279 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 311 (332)
++|+.|++++| +|+.---..+..+++|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 44555555554 3443333344444444444443
No 80
>KOG0473|consensus
Probab=89.43 E-value=0.0058 Score=51.83 Aligned_cols=84 Identities=20% Similarity=0.177 Sum_probs=64.7
Q ss_pred CCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEc
Q psy8550 135 NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL 214 (332)
Q Consensus 135 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 214 (332)
+..++.||++.|++..+...++.++.+..|+++.|++...+ ..+..+..++.+++..|+.+.. |.+++..++++++++
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~-~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLP-KDAKQQRETVNAASHKNNHSQQ-PKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhCh-hhHHHHHHHHHHHhhccchhhC-CccccccCCcchhhh
Confidence 36778888888887777777777788888888888877766 5567777777777777777666 677888888888888
Q ss_pred cCCCCC
Q psy8550 215 RGNFLE 220 (332)
Q Consensus 215 ~~n~l~ 220 (332)
.+|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 877654
No 81
>KOG3864|consensus
Probab=89.21 E-value=0.059 Score=44.82 Aligned_cols=30 Identities=23% Similarity=0.137 Sum_probs=22.8
Q ss_pred CCCCCEEEccCC-CCCCcccccccCCCCccc
Q psy8550 302 LGRLSALDLRGA-GLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 302 l~~L~~L~Ls~n-~l~~l~~~~~~~l~~L~~ 331 (332)
.++|+.|++++| +|++-.-..+..+++|+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 478999999999 688766666666666654
No 82
>KOG0473|consensus
Probab=88.54 E-value=0.008 Score=51.01 Aligned_cols=83 Identities=23% Similarity=0.159 Sum_probs=37.9
Q ss_pred CCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEc
Q psy8550 207 KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 286 (332)
Q Consensus 207 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 286 (332)
...+.||++.|++..+... |+.++.+..++++.|.+.-. |..++.+..++.+++..|..+..|- +++..++++++++
T Consensus 42 kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQQPK-SQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhhCCc-cccccCCcchhhh
Confidence 3344444444444333322 23344445555555554443 3334444444444444444444433 4555555555555
Q ss_pred CCCcCC
Q psy8550 287 GLNVFT 292 (332)
Q Consensus 287 ~~n~l~ 292 (332)
.+|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 555443
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.89 E-value=0.58 Score=25.23 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=12.5
Q ss_pred CCCCCEEEccCCCCCCcc
Q psy8550 302 LGRLSALDLRGAGLTNMM 319 (332)
Q Consensus 302 l~~L~~L~Ls~n~l~~l~ 319 (332)
+++|+.|+++.|+|+.+.
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 356778888888776653
No 84
>KOG4308|consensus
Probab=85.88 E-value=0.0096 Score=56.94 Aligned_cols=158 Identities=26% Similarity=0.334 Sum_probs=96.3
Q ss_pred CCccEEEeecCCCccc-----hhhhcCC-CCCcEEEeecCcCcccCC----CCCCCCCCCcEEEcCCCccccc----Ccc
Q psy8550 136 PSIQRLVLKYNRIKTV-----DSAIQFY-SSLQHVDLSHNQLVNIPI----RGFEPQEKLVELQLNHNKLSSV----NNK 201 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l-----~~~~~~l-~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~----~~~ 201 (332)
+.+..|++++|.+... -..+... ..+++|++..|.++.... ..+.....++.++++.|.+... .+.
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 5677788888877621 1123332 456667777777664331 2344467777888887766321 122
Q ss_pred ccC----CCCCCCEEEccCCCCCCCC----ccccCCCCC-CcEeeccCCCCcccCh----hhcCCC-CCCcEEeCCCCCC
Q psy8550 202 TFI----GLKSLKVLNLRGNFLEDLP----DRLFAPLSH-LEELDLGQNRISRIDQ----ACFEGL-TALRILYLDDNQL 267 (332)
Q Consensus 202 ~~~----~l~~L~~L~L~~n~l~~~~----~~~~~~l~~-L~~L~L~~n~l~~~~~----~~~~~l-~~L~~L~L~~n~l 267 (332)
.+. ...++++|.+.+|.++... ...+...+. +..+++..|++.+... ..+..+ ..+++++++.|.+
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi 274 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSI 274 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCc
Confidence 233 4667888888888876221 122333444 6668888887764421 234444 5678888888888
Q ss_pred CCcCc----ccccCCCCccEEEcCCCcCCc
Q psy8550 268 RSVPT----PSFIYLGMLAELRVGLNVFTT 293 (332)
Q Consensus 268 ~~~~~----~~~~~l~~L~~L~L~~n~l~~ 293 (332)
++... ..+..+..++.+.+++|.+..
T Consensus 275 ~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 275 TEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 76443 233455688888888888874
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.83 E-value=0.53 Score=25.32 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=14.3
Q ss_pred CCCCEEEccCCCCCCccc
Q psy8550 303 GRLSALDLRGAGLTNMMG 320 (332)
Q Consensus 303 ~~L~~L~Ls~n~l~~l~~ 320 (332)
.+|+.|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367888888888888876
No 86
>KOG1947|consensus
Probab=82.68 E-value=0.59 Score=44.54 Aligned_cols=132 Identities=20% Similarity=0.145 Sum_probs=76.4
Q ss_pred CCCCcEEEcCCCc-cccc-CccccCCCCCCCEEEccCC--CCCCCC---ccccCCCCCCcEeeccCCC-CcccChhhcCC
Q psy8550 182 QEKLVELQLNHNK-LSSV-NNKTFIGLKSLKVLNLRGN--FLEDLP---DRLFAPLSHLEELDLGQNR-ISRIDQACFEG 253 (332)
Q Consensus 182 l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~n--~l~~~~---~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 253 (332)
.+.|+.+.+.++. +... .-......+.|+.|+++++ .....+ ......+.+|+.++++++. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 6778888777653 3321 1123456788999998873 111111 1123456788888888877 55554443433
Q ss_pred -CCCCcEEeCCCCC-CCCcCcccc-cCCCCccEEEcCCCcCCcc--CchhcCCCCCCCEEEccCC
Q psy8550 254 -LTALRILYLDDNQ-LRSVPTPSF-IYLGMLAELRVGLNVFTTL--ADGAFNGLGRLSALDLRGA 313 (332)
Q Consensus 254 -l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n 313 (332)
+++|+.|.+.++. +++..-..+ ..++.|++|+++++...+. ......++++++.|.+...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 7788888877776 443322222 3567789999988755311 2222444666666554433
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.50 E-value=0.2 Score=26.25 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=6.1
Q ss_pred CCCCEEEccCCCCC
Q psy8550 303 GRLSALDLRGAGLT 316 (332)
Q Consensus 303 ~~L~~L~Ls~n~l~ 316 (332)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555544
No 88
>KOG4341|consensus
Probab=76.45 E-value=1.2 Score=41.37 Aligned_cols=133 Identities=20% Similarity=0.133 Sum_probs=70.6
Q ss_pred CCCCcEEEcCCCc-ccccCcccc-CCCCCCCEEEccCCC-CCCCCcccc-CCCCCCcEeeccCCCCcccC--hhhcCCCC
Q psy8550 182 QEKLVELQLNHNK-LSSVNNKTF-IGLKSLKVLNLRGNF-LEDLPDRLF-APLSHLEELDLGQNRISRID--QACFEGLT 255 (332)
Q Consensus 182 l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~--~~~~~~l~ 255 (332)
+..|+.|+.+++. ++...-.++ .+..+|+.+-+.+++ ++..--..+ .+...|+.+++.++...... ...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4556666665442 222111112 234567777776664 222111111 34566777777766443211 11123567
Q ss_pred CCcEEeCCCCCCCCcC-----cccccCCCCccEEEcCCCcCCc-cCchhcCCCCCCCEEEccCCC
Q psy8550 256 ALRILYLDDNQLRSVP-----TPSFIYLGMLAELRVGLNVFTT-LADGAFNGLGRLSALDLRGAG 314 (332)
Q Consensus 256 ~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~ 314 (332)
.|+.+.+++|....-. ...-..+..++.+.|++++... ..-+.+..+++|+.+++-++.
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 7888888877543222 1122345677888888876553 333456677788888877773
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.31 E-value=3.3 Score=22.53 Aligned_cols=15 Identities=33% Similarity=0.414 Sum_probs=11.7
Q ss_pred CCCCEEEccCCCCCC
Q psy8550 303 GRLSALDLRGAGLTN 317 (332)
Q Consensus 303 ~~L~~L~Ls~n~l~~ 317 (332)
++|++|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467888888888864
No 90
>KOG3763|consensus
Probab=60.83 E-value=5.2 Score=38.54 Aligned_cols=13 Identities=31% Similarity=0.189 Sum_probs=7.2
Q ss_pred CccEEEcCCCcCC
Q psy8550 280 MLAELRVGLNVFT 292 (332)
Q Consensus 280 ~L~~L~L~~n~l~ 292 (332)
.|++|.+.||++.
T Consensus 271 ~Leel~l~GNPlc 283 (585)
T KOG3763|consen 271 PLEELVLEGNPLC 283 (585)
T ss_pred CHHHeeecCCccc
Confidence 4555555555554
No 91
>KOG4341|consensus
Probab=51.84 E-value=8.7 Score=35.91 Aligned_cols=156 Identities=17% Similarity=0.074 Sum_probs=87.5
Q ss_pred CCccEEEeecCC-Cccch--hhhcCCCCCcEEEeecCc-CcccCCCCC-CCCCCCcEEEcCCCc-ccccCcccc-CCCCC
Q psy8550 136 PSIQRLVLKYNR-IKTVD--SAIQFYSSLQHVDLSHNQ-LVNIPIRGF-EPQEKLVELQLNHNK-LSSVNNKTF-IGLKS 208 (332)
Q Consensus 136 ~~L~~L~l~~~~-l~~l~--~~~~~l~~L~~L~l~~~~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~ 208 (332)
..+..+++..+. +++.. ..-..+..|+.|+.+++. ++...-.++ ...++|++|.+..++ ++...-..+ .+.+.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 446666665553 44322 233456778888888764 332221222 345788888888775 222211111 23567
Q ss_pred CCEEEccCCCCCCCC--ccccCCCCCCcEeeccCCCCcccC-----hhhcCCCCCCcEEeCCCCCCCC-cCcccccCCCC
Q psy8550 209 LKVLNLRGNFLEDLP--DRLFAPLSHLEELDLGQNRISRID-----QACFEGLTALRILYLDDNQLRS-VPTPSFIYLGM 280 (332)
Q Consensus 209 L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~ 280 (332)
|+.+++.++....-. ...-.+++.|+.+.++.+....-. ...-.....|+.+.++++.... ..-..+..+++
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 888888777644221 111246778888888877433211 1112345567788888876543 22234456678
Q ss_pred ccEEEcCCCcC
Q psy8550 281 LAELRVGLNVF 291 (332)
Q Consensus 281 L~~L~L~~n~l 291 (332)
|+++++-+++-
T Consensus 428 Leri~l~~~q~ 438 (483)
T KOG4341|consen 428 LERIELIDCQD 438 (483)
T ss_pred cceeeeechhh
Confidence 88888877743
No 92
>KOG3763|consensus
Probab=49.49 E-value=10 Score=36.73 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=36.1
Q ss_pred CCCCcEEeCCCCCCCCcCcc--cccCCCCccEEEcCCC--cCCccCc-hhcCCCCCCCEEEccCCCCCC
Q psy8550 254 LTALRILYLDDNQLRSVPTP--SFIYLGMLAELRVGLN--VFTTLAD-GAFNGLGRLSALDLRGAGLTN 317 (332)
Q Consensus 254 l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n--~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~ 317 (332)
.+.+..++|++|++..+... .-...++|..|+|++| .+..... +-+++ ..|++|.+.||.+.+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc
Confidence 45556666777766544320 1123477888888888 3333222 12233 357888999998753
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=42.42 E-value=17 Score=42.00 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=26.7
Q ss_pred eccCCCCcccChhhcCCCCCCcEEeCCCCCCC
Q psy8550 237 DLGQNRISRIDQACFEGLTALRILYLDDNQLR 268 (332)
Q Consensus 237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 268 (332)
||++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888888888888888888888888664
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.30 E-value=18 Score=41.80 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=28.5
Q ss_pred EcCCCcccccCccccCCCCCCCEEEccCCCCC
Q psy8550 189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220 (332)
Q Consensus 189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 220 (332)
||++|+|+.+++..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57899999999999999999999999999775
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=31.39 E-value=35 Score=17.83 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=12.0
Q ss_pred CCCCCEEEccCCC-CCC
Q psy8550 302 LGRLSALDLRGAG-LTN 317 (332)
Q Consensus 302 l~~L~~L~Ls~n~-l~~ 317 (332)
+++|+.|+|++|. ++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 4678899999984 554
Done!