Query psy8550
Match_columns 332
No_of_seqs 337 out of 3313
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 21:45:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-33 4.1E-38 251.3 22.7 227 106-332 1-230 (285)
2 3zyi_A Leucine-rich repeat-con 100.0 1.1E-31 3.7E-36 254.0 23.1 229 103-331 42-294 (452)
3 3zyj_A Leucine-rich repeat-con 100.0 8.4E-32 2.9E-36 253.9 22.0 230 102-331 30-283 (440)
4 2xwt_C Thyrotropin receptor; s 100.0 7.2E-32 2.5E-36 233.8 17.2 220 105-330 2-232 (239)
5 2o6q_A Variable lymphocyte rec 100.0 2.2E-30 7.7E-35 228.5 23.1 211 108-318 9-220 (270)
6 2id5_A Lingo-1, leucine rich r 100.0 1.3E-30 4.5E-35 248.0 19.9 226 106-331 2-252 (477)
7 2z66_A Variable lymphocyte rec 100.0 1.4E-30 4.7E-35 233.8 15.5 223 107-331 1-252 (306)
8 2z62_A TOLL-like receptor 4, v 100.0 4.1E-30 1.4E-34 227.4 18.2 222 110-332 2-229 (276)
9 2z80_A TOLL-like receptor 2, v 100.0 2E-29 6.9E-34 230.8 16.2 230 102-332 19-306 (353)
10 3v47_A TOLL-like receptor 5B a 100.0 6.5E-29 2.2E-33 234.7 20.0 275 35-332 19-400 (455)
11 2id5_A Lingo-1, leucine rich r 100.0 5.9E-29 2E-33 236.6 19.7 273 35-331 20-324 (477)
12 1xku_A Decorin; proteoglycan, 100.0 2.7E-28 9.1E-33 221.3 22.2 219 104-330 22-243 (330)
13 2ft3_A Biglycan; proteoglycan, 100.0 2.6E-28 8.9E-33 221.6 20.4 216 104-325 24-286 (332)
14 4ay9_X Follicle-stimulating ho 100.0 1.5E-28 5E-33 225.0 17.5 223 106-331 1-230 (350)
15 1xku_A Decorin; proteoglycan, 100.0 1.1E-27 3.9E-32 217.1 22.8 268 36-331 41-323 (330)
16 3v47_A TOLL-like receptor 5B a 100.0 2.9E-28 9.9E-33 230.3 19.2 164 105-271 2-170 (455)
17 3t6q_A CD180 antigen; protein- 100.0 3E-28 1E-32 238.2 18.2 191 106-296 3-196 (606)
18 3m19_A Variable lymphocyte rec 100.0 6.1E-28 2.1E-32 210.6 17.6 190 105-294 2-194 (251)
19 2o6q_A Variable lymphocyte rec 100.0 2.3E-27 7.7E-32 209.3 20.9 194 137-332 17-210 (270)
20 2ft3_A Biglycan; proteoglycan, 100.0 1E-27 3.4E-32 217.7 18.6 269 35-332 42-325 (332)
21 3rgz_A Protein brassinosteroid 100.0 9.1E-30 3.1E-34 255.7 5.6 216 116-331 419-708 (768)
22 1p9a_G Platelet glycoprotein I 100.0 5.8E-27 2E-31 208.9 21.6 202 112-317 7-209 (290)
23 3zyj_A Leucine-rich repeat-con 100.0 7.1E-27 2.4E-31 220.2 23.2 199 117-317 66-293 (440)
24 3rgz_A Protein brassinosteroid 100.0 5.6E-29 1.9E-33 250.0 8.1 217 116-332 395-685 (768)
25 3zyi_A Leucine-rich repeat-con 100.0 6.8E-27 2.3E-31 221.1 21.8 180 136-317 123-304 (452)
26 4eco_A Uncharacterized protein 100.0 2.2E-28 7.7E-33 240.6 12.0 262 57-322 263-585 (636)
27 4fcg_A Uncharacterized protein 100.0 2E-27 6.9E-32 215.5 17.3 214 115-331 81-305 (328)
28 3t6q_A CD180 antigen; protein- 100.0 1.8E-27 6.3E-32 232.7 18.2 261 46-331 280-551 (606)
29 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-26 5.3E-31 205.3 21.2 203 115-317 32-239 (285)
30 1ogq_A PGIP-2, polygalacturona 99.9 4.2E-28 1.4E-32 218.6 10.0 253 35-314 38-302 (313)
31 2o6s_A Variable lymphocyte rec 99.9 7E-27 2.4E-31 198.0 16.2 204 107-323 1-205 (208)
32 3vq2_A TLR4, TOLL-like recepto 99.9 3.4E-27 1.2E-31 230.8 15.2 220 110-330 6-232 (606)
33 2z66_A Variable lymphocyte rec 99.9 1.3E-26 4.3E-31 207.9 17.7 207 113-319 50-264 (306)
34 1ziw_A TOLL-like receptor 3; i 99.9 9.7E-27 3.3E-31 230.6 18.3 182 111-294 2-186 (680)
35 1ogq_A PGIP-2, polygalacturona 99.9 5.7E-27 1.9E-31 211.2 15.0 214 116-331 51-272 (313)
36 4eco_A Uncharacterized protein 99.9 1.9E-27 6.4E-32 234.1 12.5 202 117-322 379-606 (636)
37 4g8a_A TOLL-like receptor 4; l 99.9 7.8E-27 2.7E-31 228.6 15.9 227 102-329 18-251 (635)
38 3o6n_A APL1; leucine-rich repe 99.9 2.6E-26 8.7E-31 212.9 18.2 251 46-324 47-339 (390)
39 4fcg_A Uncharacterized protein 99.9 2.4E-26 8.3E-31 208.4 16.7 209 113-323 102-321 (328)
40 3m19_A Variable lymphocyte rec 99.9 8.2E-26 2.8E-30 197.1 19.3 181 136-318 14-194 (251)
41 2z63_A TOLL-like receptor 4, v 99.9 2.2E-26 7.4E-31 223.2 15.8 203 110-313 2-210 (570)
42 4ecn_A Leucine-rich repeat pro 99.9 1.6E-26 5.6E-31 232.8 15.4 272 47-323 494-826 (876)
43 1ziw_A TOLL-like receptor 3; i 99.9 8.1E-26 2.8E-30 224.0 19.3 215 116-330 382-612 (680)
44 3vq2_A TLR4, TOLL-like recepto 99.9 3.4E-26 1.2E-30 223.7 16.0 214 116-331 329-549 (606)
45 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.1E-25 2.1E-29 213.2 23.7 114 35-172 40-159 (562)
46 2xot_A Amphoterin-induced prot 99.9 5.7E-26 1.9E-30 208.6 15.4 190 101-292 6-202 (361)
47 3oja_B Anopheles plasmodium-re 99.9 1E-25 3.4E-30 220.3 17.4 252 47-326 54-347 (597)
48 4fmz_A Internalin; leucine ric 99.9 4.1E-25 1.4E-29 201.4 19.6 269 45-331 67-337 (347)
49 2z81_A CD282 antigen, TOLL-lik 99.9 8E-26 2.7E-30 218.4 14.8 200 120-319 10-212 (549)
50 1p9a_G Platelet glycoprotein I 99.9 3.7E-25 1.3E-29 197.1 17.9 189 136-330 10-198 (290)
51 3o6n_A APL1; leucine-rich repe 99.9 5.2E-25 1.8E-29 204.1 19.5 194 136-330 45-298 (390)
52 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.5E-25 8.4E-30 215.9 17.9 137 106-246 23-161 (562)
53 3rfs_A Internalin B, repeat mo 99.9 8.5E-25 2.9E-29 193.0 19.7 203 116-326 42-245 (272)
54 2z62_A TOLL-like receptor 4, v 99.9 5.8E-25 2E-29 194.3 18.1 203 115-318 28-239 (276)
55 2z80_A TOLL-like receptor 2, v 99.9 8E-26 2.7E-30 206.9 12.7 245 50-320 37-318 (353)
56 2z7x_B TOLL-like receptor 1, v 99.9 6.5E-25 2.2E-29 210.8 19.4 126 205-331 322-472 (520)
57 1wwl_A Monocyte differentiatio 99.9 2.8E-25 9.5E-30 200.0 15.3 248 46-318 45-311 (312)
58 4ecn_A Leucine-rich repeat pro 99.9 9.6E-26 3.3E-30 227.2 13.2 162 159-324 673-848 (876)
59 3rfs_A Internalin B, repeat mo 99.9 7.1E-25 2.4E-29 193.5 16.7 182 136-320 41-222 (272)
60 2v9t_B SLIT homolog 2 protein 99.9 1.1E-24 3.7E-29 186.3 17.3 163 104-268 2-165 (220)
61 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-24 4E-29 213.1 19.6 105 227-331 465-571 (635)
62 3oja_B Anopheles plasmodium-re 99.9 2.3E-24 7.8E-29 210.6 20.4 193 136-331 75-305 (597)
63 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-24 4.5E-29 220.4 19.3 156 111-269 2-162 (844)
64 2z63_A TOLL-like receptor 4, v 99.9 3.4E-25 1.2E-29 214.8 14.2 234 57-317 272-532 (570)
65 4fmz_A Internalin; leucine ric 99.9 1.5E-24 5.1E-29 197.7 17.4 269 47-332 47-316 (347)
66 2v70_A SLIT-2, SLIT homolog 2 99.9 3.6E-24 1.2E-28 183.1 16.4 163 105-269 3-167 (220)
67 1jl5_A Outer protein YOPM; leu 99.9 4E-24 1.4E-28 202.1 17.4 246 45-320 12-274 (454)
68 1wwl_A Monocyte differentiatio 99.9 1.2E-25 4E-30 202.5 6.4 194 131-330 58-299 (312)
69 2z81_A CD282 antigen, TOLL-lik 99.9 5E-25 1.7E-29 212.9 9.9 87 136-222 123-211 (549)
70 2xwt_C Thyrotropin receptor; s 99.9 1.4E-23 4.7E-28 181.6 17.8 193 115-313 31-236 (239)
71 2z7x_B TOLL-like receptor 1, v 99.9 6.1E-25 2.1E-29 211.0 10.3 160 156-318 321-483 (520)
72 3j0a_A TOLL-like receptor 5; m 99.9 5.7E-24 2E-28 215.7 17.7 101 231-331 266-366 (844)
73 1o6v_A Internalin A; bacterial 99.9 9.6E-24 3.3E-28 200.2 17.7 180 137-331 178-357 (466)
74 1o6v_A Internalin A; bacterial 99.9 2.3E-24 7.9E-29 204.5 13.5 202 115-331 177-379 (466)
75 1h6u_A Internalin H; cell adhe 99.9 2E-23 6.9E-28 187.5 17.7 193 116-322 42-236 (308)
76 1h6u_A Internalin H; cell adhe 99.9 2.2E-23 7.6E-28 187.2 17.4 182 136-332 41-222 (308)
77 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-24 5.2E-29 195.6 9.6 233 63-330 30-265 (317)
78 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-22 4.9E-27 191.6 23.2 224 58-327 33-257 (457)
79 3oja_A Leucine-rich immune mol 99.9 1.4E-24 4.7E-29 207.1 8.9 230 65-329 32-264 (487)
80 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-22 4.3E-27 192.0 20.2 206 47-296 45-250 (457)
81 2o6s_A Variable lymphocyte rec 99.9 3.6E-23 1.2E-27 175.1 14.7 180 139-327 10-189 (208)
82 3oja_A Leucine-rich immune mol 99.9 2.8E-23 9.5E-28 198.0 12.8 203 116-331 35-241 (487)
83 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-23 7.7E-28 187.9 10.9 203 116-331 35-241 (317)
84 2xot_A Amphoterin-induced prot 99.9 6.7E-23 2.3E-27 188.2 14.0 177 139-317 21-203 (361)
85 2v9t_B SLIT homolog 2 protein 99.9 4.7E-22 1.6E-26 169.9 15.4 153 139-293 14-166 (220)
86 3cvr_A Invasion plasmid antige 99.9 6.5E-22 2.2E-26 191.0 18.1 186 116-325 60-252 (571)
87 4glp_A Monocyte differentiatio 99.9 1.3E-22 4.4E-27 182.3 11.4 196 117-317 93-308 (310)
88 3g06_A SSPH2 (leucine-rich rep 99.9 6.4E-22 2.2E-26 193.1 17.0 206 107-331 31-288 (622)
89 1h6t_A Internalin B; cell adhe 99.9 3.8E-22 1.3E-26 177.7 13.5 175 136-323 46-220 (291)
90 3e6j_A Variable lymphocyte rec 99.9 2.2E-21 7.6E-26 166.7 17.4 162 106-270 12-174 (229)
91 4glp_A Monocyte differentiatio 99.9 6.3E-22 2.1E-26 177.8 14.0 191 136-331 91-298 (310)
92 1jl5_A Outer protein YOPM; leu 99.9 7.4E-21 2.5E-25 179.7 21.8 253 37-319 22-293 (454)
93 2wfh_A SLIT homolog 2 protein 99.9 1.5E-21 5.1E-26 163.4 14.8 138 105-244 2-139 (193)
94 2v70_A SLIT-2, SLIT homolog 2 99.9 2.2E-21 7.6E-26 165.7 15.3 155 139-295 14-169 (220)
95 3g06_A SSPH2 (leucine-rich rep 99.9 3.7E-21 1.3E-25 187.8 18.6 237 35-324 49-305 (622)
96 3e6j_A Variable lymphocyte rec 99.9 9.4E-21 3.2E-25 162.8 17.7 155 138-295 21-175 (229)
97 1xeu_A Internalin C; cellular 99.8 7.3E-22 2.5E-26 173.3 7.4 173 136-322 19-191 (263)
98 1m9s_A Internalin B; cell inva 99.8 5.1E-21 1.7E-25 186.5 14.0 173 136-321 43-215 (605)
99 1w8a_A SLIT protein; signaling 99.8 1.3E-20 4.4E-25 157.5 13.8 137 106-244 1-139 (192)
100 4ay9_X Follicle-stimulating ho 99.8 1.8E-20 6.1E-25 171.2 15.2 210 115-330 30-249 (350)
101 1h6t_A Internalin B; cell adhe 99.8 3.2E-20 1.1E-24 165.2 14.9 176 142-332 30-205 (291)
102 3cvr_A Invasion plasmid antige 99.8 8.2E-20 2.8E-24 176.3 18.2 170 136-332 59-235 (571)
103 2o6r_A Variable lymphocyte rec 99.8 7.5E-20 2.6E-24 150.6 15.0 138 107-246 1-139 (177)
104 2ca6_A RAN GTPase-activating p 99.8 8E-22 2.7E-26 182.4 0.9 249 52-320 17-320 (386)
105 4ezg_A Putative uncharacterize 99.8 6.9E-20 2.4E-24 153.6 12.7 153 157-317 42-195 (197)
106 4ezg_A Putative uncharacterize 99.8 1.1E-19 3.7E-24 152.4 13.3 151 136-293 44-195 (197)
107 3sb4_A Hypothetical leucine ri 99.8 5.8E-20 2E-24 166.4 12.3 211 116-332 50-326 (329)
108 1m9s_A Internalin B; cell inva 99.8 6.5E-20 2.2E-24 178.6 9.7 181 137-332 22-202 (605)
109 1xeu_A Internalin C; cellular 99.8 4.1E-19 1.4E-23 155.7 12.0 150 136-297 41-190 (263)
110 3goz_A Leucine-rich repeat-con 99.8 3.4E-20 1.2E-24 170.1 4.8 206 116-321 23-271 (362)
111 1dce_A Protein (RAB geranylger 99.8 7.7E-22 2.6E-26 191.0 -9.3 192 136-332 349-565 (567)
112 2ast_B S-phase kinase-associat 99.8 1.3E-19 4.3E-24 164.2 5.7 197 117-313 72-282 (336)
113 3goz_A Leucine-rich repeat-con 99.8 9.5E-20 3.2E-24 167.1 4.8 203 116-318 52-299 (362)
114 2ast_B S-phase kinase-associat 99.8 5E-20 1.7E-24 166.8 2.5 216 117-332 49-277 (336)
115 1w8a_A SLIT protein; signaling 99.8 6.3E-19 2.1E-23 147.2 8.6 131 139-271 11-142 (192)
116 2ca6_A RAN GTPase-activating p 99.8 5.8E-20 2E-24 169.9 1.0 216 116-331 33-307 (386)
117 2ell_A Acidic leucine-rich nuc 99.8 2.9E-18 1E-22 139.8 10.5 137 133-271 21-163 (168)
118 2ell_A Acidic leucine-rich nuc 99.8 3.6E-18 1.2E-22 139.3 10.8 137 183-321 24-165 (168)
119 1z7x_W Ribonuclease inhibitor; 99.8 2.1E-20 7.3E-25 176.5 -3.1 263 57-320 103-415 (461)
120 1z7x_W Ribonuclease inhibitor; 99.7 8E-20 2.7E-24 172.5 -0.8 186 138-323 144-361 (461)
121 2o6r_A Variable lymphocyte rec 99.7 3.3E-17 1.1E-21 134.7 14.9 111 184-294 29-139 (177)
122 2r9u_A Variable lymphocyte rec 99.7 2.2E-17 7.5E-22 135.6 13.2 120 103-224 2-122 (174)
123 2wfh_A SLIT homolog 2 protein 99.7 3.5E-17 1.2E-21 136.7 13.8 128 162-293 13-140 (193)
124 3g39_A Variable lymphocyte rec 99.7 2.6E-17 8.9E-22 134.6 12.5 115 106-222 2-117 (170)
125 3sb4_A Hypothetical leucine ri 99.7 6E-18 2E-22 153.1 8.7 193 136-332 25-302 (329)
126 1dce_A Protein (RAB geranylger 99.7 3.9E-18 1.3E-22 165.1 6.0 211 45-310 350-567 (567)
127 2je0_A Acidic leucine-rich nuc 99.7 3.4E-17 1.2E-21 130.7 9.8 128 183-312 17-149 (149)
128 4b8c_D Glucose-repressible alc 99.7 4.5E-18 1.5E-22 169.4 3.0 152 152-313 217-369 (727)
129 4b8c_D Glucose-repressible alc 99.7 5.4E-18 1.8E-22 168.8 2.5 142 177-322 218-360 (727)
130 4fdw_A Leucine rich hypothetic 99.7 1.2E-15 4.2E-20 141.5 18.0 201 119-327 161-369 (401)
131 4fdw_A Leucine rich hypothetic 99.7 2.2E-15 7.5E-20 139.8 19.6 205 117-331 137-349 (401)
132 2je0_A Acidic leucine-rich nuc 99.7 5.1E-17 1.7E-21 129.7 6.7 126 159-287 17-148 (149)
133 1a9n_A U2A', U2A'; complex (nu 99.7 1.1E-16 3.9E-21 131.5 8.5 132 181-316 17-153 (176)
134 1a9n_A U2A', U2A'; complex (nu 99.6 1.7E-16 5.8E-21 130.4 7.1 135 155-293 15-154 (176)
135 3g39_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 122.0 12.6 107 185-294 11-117 (170)
136 2r9u_A Variable lymphocyte rec 99.6 5.8E-15 2E-19 121.1 12.8 106 186-294 15-120 (174)
137 1ds9_A Outer arm dynein; leuci 99.5 7.2E-18 2.5E-22 141.4 -11.2 131 179-316 44-185 (198)
138 2ifg_A High affinity nerve gro 99.5 3.7E-14 1.3E-18 128.9 11.3 111 107-221 1-117 (347)
139 1ds9_A Outer arm dynein; leuci 99.5 9.2E-18 3.1E-22 140.7 -12.3 126 201-331 42-178 (198)
140 3ogk_B Coronatine-insensitive 99.5 7.4E-16 2.5E-20 149.8 -3.6 142 182-323 377-533 (592)
141 2ifg_A High affinity nerve gro 99.4 4.6E-13 1.6E-17 121.6 12.0 107 186-295 11-119 (347)
142 3ogk_B Coronatine-insensitive 99.4 3.4E-14 1.2E-18 138.1 2.0 174 136-311 220-411 (592)
143 3un9_A NLR family member X1; l 99.4 8.7E-15 3E-19 134.5 -5.4 168 133-300 69-260 (372)
144 2p1m_B Transport inhibitor res 99.3 2.7E-14 9.1E-19 138.8 -4.8 134 182-316 371-519 (594)
145 3un9_A NLR family member X1; l 99.3 2.8E-14 9.4E-19 131.1 -5.2 87 183-269 155-253 (372)
146 2p1m_B Transport inhibitor res 99.2 1.2E-12 4.2E-17 127.1 1.6 56 254-310 288-345 (594)
147 4gt6_A Cell surface protein; l 99.1 1.9E-09 6.4E-14 99.6 18.1 103 225-331 259-361 (394)
148 4fs7_A Uncharacterized protein 99.1 1.5E-09 5E-14 100.3 13.3 189 136-331 162-392 (394)
149 4fs7_A Uncharacterized protein 99.0 1.7E-09 5.9E-14 99.8 12.7 104 200-308 290-393 (394)
150 4gt6_A Cell surface protein; l 99.0 5.4E-09 1.8E-13 96.5 15.3 207 117-331 66-338 (394)
151 4h09_A Hypothetical leucine ri 99.0 1E-08 3.5E-13 94.0 14.3 153 173-330 207-359 (379)
152 4h09_A Hypothetical leucine ri 98.9 1.5E-08 5.3E-13 92.8 14.4 168 154-330 212-379 (379)
153 2ra8_A Uncharacterized protein 98.8 7E-10 2.4E-14 101.1 2.2 174 136-314 139-341 (362)
154 2ra8_A Uncharacterized protein 98.8 4.8E-09 1.6E-13 95.6 6.9 168 150-321 130-325 (362)
155 3rfe_A Platelet glycoprotein I 98.6 3.8E-08 1.3E-12 76.1 6.3 64 106-171 1-67 (130)
156 1io0_A Tropomodulin; LRR prote 98.4 6E-08 2E-12 79.8 1.9 114 203-316 32-164 (185)
157 1io0_A Tropomodulin; LRR prote 98.2 1.3E-07 4.4E-12 77.8 -0.0 122 151-292 28-164 (185)
158 3rw6_A Nuclear RNA export fact 98.2 1.1E-06 3.8E-11 76.2 5.1 77 231-309 170-257 (267)
159 3e4g_A ATP synthase subunit S, 98.1 1.1E-06 3.9E-11 71.0 2.5 86 232-317 62-154 (176)
160 3rw6_A Nuclear RNA export fact 98.1 2.3E-06 8E-11 74.2 4.4 96 236-332 148-256 (267)
161 3e4g_A ATP synthase subunit S, 97.8 6.4E-06 2.2E-10 66.6 2.5 34 184-217 62-95 (176)
162 3rfe_A Platelet glycoprotein I 97.2 0.00062 2.1E-08 52.1 6.2 33 209-241 33-65 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.5 0.0016 5.5E-08 53.5 3.8 85 182-266 69-168 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.5 0.002 6.7E-08 52.9 4.0 113 203-315 37-169 (197)
165 2lz0_A Uncharacterized protein 88.6 1.2 4.2E-05 31.8 6.3 48 169-217 6-53 (100)
166 2lz0_A Uncharacterized protein 85.2 2.1 7.1E-05 30.5 5.9 46 194-240 7-52 (100)
No 1
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=100.00 E-value=1.2e-33 Score=251.30 Aligned_cols=227 Identities=30% Similarity=0.444 Sum_probs=214.4
Q ss_pred CCCCCCcccCCC-ceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCC
Q psy8550 106 FCPPDCDCNDET-LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQE 183 (332)
Q Consensus 106 ~~p~~c~c~~~~-~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~ 183 (332)
.||..|.|.... ..++|.+..++.+|.++++++++|++++|.++.+++ .+..+++|++|++++|.++.+.+..|..++
T Consensus 1 ~CP~~C~C~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 80 (285)
T 1ozn_A 1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80 (285)
T ss_dssp CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CcCCCceECCCCCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc
Confidence 499999998654 689999999999999999999999999999998886 789999999999999999999889999999
Q ss_pred CCcEEEcCCCc-ccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeC
Q psy8550 184 KLVELQLNHNK-LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL 262 (332)
Q Consensus 184 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 262 (332)
+|++|++++|. +..+.+..|.++++|++|++++|.++.+++..+..+++|++|++++|.++.+++..++.+++|+.|++
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 99999999997 99998999999999999999999999998888899999999999999999998888999999999999
Q ss_pred CCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550 263 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332 (332)
Q Consensus 263 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l 332 (332)
++|.++++++..+..+++|+.|++++|.+++..+..+.++++|+.|++++|+++++++..|+.++.|+.|
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred CCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 9999999998889999999999999999999999899999999999999999999999999999888753
No 2
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=1.1e-31 Score=254.00 Aligned_cols=229 Identities=27% Similarity=0.419 Sum_probs=177.7
Q ss_pred CCCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCC
Q psy8550 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEP 181 (332)
Q Consensus 103 ~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 181 (332)
....||..|.|......+.|.+..++.+|.+++++++.|++++|.++.+++ .+.++++|++|++++|.+..+++..|.+
T Consensus 42 ~~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 121 (452)
T 3zyi_A 42 GPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121 (452)
T ss_dssp --CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CcCCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC
Confidence 356799999998877789999999999999999999999999999998755 8999999999999999999999999999
Q ss_pred CCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccC-CCCcccChhhcCCCC-----
Q psy8550 182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ-NRISRIDQACFEGLT----- 255 (332)
Q Consensus 182 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~----- 255 (332)
+++|++|++++|.++.+++..|.++++|++|++++|.++.+++..|..+++|+.|++++ +.+..+++..|..++
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 99999999999999999888899999999999999999888776666666666666655 344444444444444
Q ss_pred -----------------CCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCc
Q psy8550 256 -----------------ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318 (332)
Q Consensus 256 -----------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l 318 (332)
+|+.|++++|.++++++..|..+++|+.|++++|+++++.+.+|.++++|+.|+|++|+++++
T Consensus 202 ~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 202 NLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp ECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence 555555555555555555666666666666666666666666666666777777777777777
Q ss_pred ccccccCCCCccc
Q psy8550 319 MGHSMALGDYLHW 331 (332)
Q Consensus 319 ~~~~~~~l~~L~~ 331 (332)
++..|..++.|+.
T Consensus 282 ~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 282 PHDLFTPLRYLVE 294 (452)
T ss_dssp CTTSSTTCTTCCE
T ss_pred ChHHhccccCCCE
Confidence 7666666666653
No 3
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=8.4e-32 Score=253.89 Aligned_cols=230 Identities=29% Similarity=0.440 Sum_probs=174.9
Q ss_pred cCCCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCC
Q psy8550 102 QASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFE 180 (332)
Q Consensus 102 ~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~ 180 (332)
.....||..|.|......+.|.+..++.+|.+++++++.|++++|.++.++. .+.++++|++|++++|.+..+++..|.
T Consensus 30 ~~~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~ 109 (440)
T 3zyj_A 30 GSAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109 (440)
T ss_dssp ---CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGT
T ss_pred cccccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhcc
Confidence 3456799999999877789999999999999999999999999999998775 889999999999999999999888899
Q ss_pred CCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccC-CCCcccChhhcCCC-----
Q psy8550 181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ-NRISRIDQACFEGL----- 254 (332)
Q Consensus 181 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l----- 254 (332)
++++|++|++++|+++.+++..|.++++|++|++++|.++.+++..|..+++|+.|++++ +.+..+++..|.++
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 999999999999999988888888899999999999888877766566666666666655 34444444444444
Q ss_pred -----------------CCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCC
Q psy8550 255 -----------------TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317 (332)
Q Consensus 255 -----------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 317 (332)
++|+.|++++|.++++++..|..+++|+.|++++|+++++.+.+|.++++|+.|+|++|++++
T Consensus 190 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 190 LNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp EECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred ecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 455555555555555555566666666666666666666666666667777777777777777
Q ss_pred cccccccCCCCccc
Q psy8550 318 MMGHSMALGDYLHW 331 (332)
Q Consensus 318 l~~~~~~~l~~L~~ 331 (332)
+++..|..++.|+.
T Consensus 270 ~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 270 LPHDLFTPLHHLER 283 (440)
T ss_dssp CCTTTTSSCTTCCE
T ss_pred cChhHhccccCCCE
Confidence 77777766666654
No 4
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.98 E-value=7.2e-32 Score=233.78 Aligned_cols=220 Identities=25% Similarity=0.381 Sum_probs=203.2
Q ss_pred CCCCCCCcccC-CCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCc-CcccCCCCCCC
Q psy8550 105 AFCPPDCDCND-ETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQ-LVNIPIRGFEP 181 (332)
Q Consensus 105 ~~~p~~c~c~~-~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~-l~~~~~~~~~~ 181 (332)
+.||..|.|.. ....++|.+ ++.+|. +++++++|++++|.++.+++ .+.++++|++|++++|. ++.+++..|..
T Consensus 2 ~~cp~~C~C~~~~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~ 78 (239)
T 2xwt_C 2 GCSSPPCECHQEEDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN 78 (239)
T ss_dssp -CCSSSCSEEECSTTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEES
T ss_pred CCCCCCCeeCCCCcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCC
Confidence 35999999987 666788987 889998 99999999999999999988 89999999999999997 99999889999
Q ss_pred CCCCcEEEcCC-CcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCc---EeeccCC-CCcccChhhcCCCCC
Q psy8550 182 QEKLVELQLNH-NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLE---ELDLGQN-RISRIDQACFEGLTA 256 (332)
Q Consensus 182 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~ 256 (332)
+++|++|++++ |.++.+++..|.++++|++|++++|.++.+|. +..+++|+ .|++++| .++.+++..|..+++
T Consensus 79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~ 156 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN 156 (239)
T ss_dssp CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS
T ss_pred CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhc
Confidence 99999999998 99999988999999999999999999999887 78888888 9999999 999999888999999
Q ss_pred Cc-EEeCCCCCCCCcCcccccCCCCccEEEcCCCc-CCccCchhcCCC-CCCCEEEccCCCCCCcccccccCCCCcc
Q psy8550 257 LR-ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV-FTTLADGAFNGL-GRLSALDLRGAGLTNMMGHSMALGDYLH 330 (332)
Q Consensus 257 L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~Ls~n~l~~l~~~~~~~l~~L~ 330 (332)
|+ .|++++|.++.+++..+.. ++|+.|++++|+ ++++++..|.++ ++|+.|++++|+++++++..|..++.|+
T Consensus 157 L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~ 232 (239)
T 2xwt_C 157 ETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232 (239)
T ss_dssp SEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEE
T ss_pred ceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceee
Confidence 99 9999999999999877766 899999999995 999999999999 9999999999999999999888777664
No 5
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.97 E-value=2.2e-30 Score=228.54 Aligned_cols=211 Identities=30% Similarity=0.477 Sum_probs=199.8
Q ss_pred CCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCc
Q psy8550 108 PPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLV 186 (332)
Q Consensus 108 p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 186 (332)
+..|.|......++|.++.++.+|..+++++++|++++|.++.+++ .+.++++|++|++++|.++.+++..|..+++|+
T Consensus 9 ~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 9 GGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88 (270)
T ss_dssp TCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred CCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence 4568998877899999999999999999999999999999998887 799999999999999999999988899999999
Q ss_pred EEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCC
Q psy8550 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ 266 (332)
Q Consensus 187 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 266 (332)
+|++++|.++.+++..|.++++|++|++++|.++.+++..|+.+++|++|++++|.++.+++..+..+++|+.|++++|.
T Consensus 89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 99999999999988899999999999999999999999889999999999999999999988889999999999999999
Q ss_pred CCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCc
Q psy8550 267 LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318 (332)
Q Consensus 267 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l 318 (332)
++++++..|..+++|+.|++++|+++++++..+..+++|+.|++++|.+..-
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 9999998899999999999999999999998899999999999999998654
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=248.03 Aligned_cols=226 Identities=28% Similarity=0.436 Sum_probs=200.1
Q ss_pred CCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550 106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184 (332)
Q Consensus 106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~ 184 (332)
.||..|.|......+.|.+..++.+|.+++++++.|++++|.++.+++ .+.++++|++|++++|.+..+.+..|.++++
T Consensus 2 ~Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 81 (477)
T 2id5_A 2 GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81 (477)
T ss_dssp CCSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence 599999999877789999999999999999999999999999998865 8999999999999999999998899999999
Q ss_pred CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCC
Q psy8550 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDD 264 (332)
Q Consensus 185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (332)
|++|++++|.++.+++..|.++++|++|++++|.++.+++..|..+++|+.|++++|.++.+.+..|..+++|+.|++++
T Consensus 82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC
Confidence 99999999999999888899999999999999999999888889999999999999999998888899999999999999
Q ss_pred CCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCC------------------------CEEEccCCCCCCccc
Q psy8550 265 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL------------------------SALDLRGAGLTNMMG 320 (332)
Q Consensus 265 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------------------~~L~Ls~n~l~~l~~ 320 (332)
|.++++++..+..+++|+.|++++|.+.++++..|..+++| +.|++++|+++.+++
T Consensus 162 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp CCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred CcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 99999888778888888888888888888777666666554 455555667777777
Q ss_pred ccccCCCCccc
Q psy8550 321 HSMALGDYLHW 331 (332)
Q Consensus 321 ~~~~~l~~L~~ 331 (332)
..|+.++.|+.
T Consensus 242 ~~~~~l~~L~~ 252 (477)
T 2id5_A 242 LAVRHLVYLRF 252 (477)
T ss_dssp HHHTTCTTCCE
T ss_pred HHhcCccccCe
Confidence 77777777664
No 7
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.4e-30 Score=233.80 Aligned_cols=223 Identities=24% Similarity=0.373 Sum_probs=158.4
Q ss_pred CCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccC--CCC-----
Q psy8550 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIP--IRG----- 178 (332)
Q Consensus 107 ~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~--~~~----- 178 (332)
||..|.|... .++|.+..++.+|.++++++++|++++|.++.+|. .+.++++|++|++++|.+..+. +..
T Consensus 1 CP~~C~C~~~--~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 78 (306)
T 2z66_A 1 CPSRCSCSGT--EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78 (306)
T ss_dssp CCTTCEEETT--EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS
T ss_pred CcCCCeeCCC--EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc
Confidence 8999999754 79999999999999999999999999999998887 4788999999999998877442 122
Q ss_pred ------------------CCCCCCCcEEEcCCCcccccCc-cccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeecc
Q psy8550 179 ------------------FEPQEKLVELQLNHNKLSSVNN-KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLG 239 (332)
Q Consensus 179 ------------------~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 239 (332)
+..+++|++|++++|.++++.+ ..+.++++|++|++++|.+...++..+..+++|++|+++
T Consensus 79 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred ccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 3445555555555555555543 455566666666666666665555555666666666666
Q ss_pred CCCCcc-cChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCc
Q psy8550 240 QNRISR-IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318 (332)
Q Consensus 240 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l 318 (332)
+|.+++ ..+..+..+++|+.|++++|.++++++..++.+++|+.|++++|.++++++..+..+++|+.||+++|++++.
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 666654 3345566667777777777777776666667777777777777777777666677777777777777777777
Q ss_pred ccccccCCC-Cccc
Q psy8550 319 MGHSMALGD-YLHW 331 (332)
Q Consensus 319 ~~~~~~~l~-~L~~ 331 (332)
++..+..++ .|+.
T Consensus 239 ~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 239 KKQELQHFPSSLAF 252 (306)
T ss_dssp SSSSCCCCCTTCCE
T ss_pred CHHHHHhhhccCCE
Confidence 776666653 5543
No 8
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.97 E-value=4.1e-30 Score=227.43 Aligned_cols=222 Identities=27% Similarity=0.329 Sum_probs=201.4
Q ss_pred CCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEE
Q psy8550 110 DCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVEL 188 (332)
Q Consensus 110 ~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 188 (332)
.|.|......+.|.+..+..+|..+++++++|++++|.++.++. .+.++++|++|++++|.+..+++..|..+++|++|
T Consensus 2 ~C~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (276)
T 2z62_A 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (276)
T ss_dssp CSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CceeccCCceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEE
Confidence 46776666689999999999999999999999999999998887 89999999999999999999998899999999999
Q ss_pred EcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccC-hhhcCCCCCCcEEeCCCCCC
Q psy8550 189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID-QACFEGLTALRILYLDDNQL 267 (332)
Q Consensus 189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l 267 (332)
++++|.++++.+..|.++++|++|++++|.++.+++..++.+++|++|++++|.++.+. +..+..+++|++|++++|.+
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 99999999998899999999999999999999999877899999999999999999864 77899999999999999999
Q ss_pred CCcCcccccCCCCcc----EEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550 268 RSVPTPSFIYLGMLA----ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332 (332)
Q Consensus 268 ~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l 332 (332)
+++++..+..+.+++ .|++++|+++++++..+.. .+|+.|++++|+++++++..|+.++.|+.|
T Consensus 162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred CcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEE
Confidence 999887787777766 8999999999988866654 489999999999999999888888888653
No 9
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2e-29 Score=230.82 Aligned_cols=230 Identities=25% Similarity=0.334 Sum_probs=189.4
Q ss_pred cCCCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCC
Q psy8550 102 QASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFE 180 (332)
Q Consensus 102 ~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~ 180 (332)
.....|+..|.|.... .++|.++.++.+|.++++++++|++++|.++.++. .+.++++|++|++++|.++.+.+..|.
T Consensus 19 ~~~~~~~~~~~C~~~~-~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (353)
T 2z80_A 19 KEESSNQASLSCDRNG-ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97 (353)
T ss_dssp --------CCEECTTS-EEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CccCCCccCCCCCCCe-EeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC
Confidence 4444578888887654 58999999999999999999999999999999888 899999999999999999999988999
Q ss_pred CCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCc-cccCCCCCCcEeeccCC-CCcccChhhcCCCCCCc
Q psy8550 181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEELDLGQN-RISRIDQACFEGLTALR 258 (332)
Q Consensus 181 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 258 (332)
.+++|++|++++|.++++++..|.++++|++|++++|.++.++. ..+..+++|++|++++| .+..+.+..+..+++|+
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 99999999999999999988789999999999999999999988 67889999999999998 58888788888889999
Q ss_pred EEeCCCCCCCCcCcccccCCCCccEEEcCCCc------------------------CCccC-------------------
Q psy8550 259 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV------------------------FTTLA------------------- 295 (332)
Q Consensus 259 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------------------------l~~~~------------------- 295 (332)
+|++++|.+.++.+..++.+++|++|++++|. +++..
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 99999998888866666665555555555554 44322
Q ss_pred ------------chhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550 296 ------------DGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332 (332)
Q Consensus 296 ------------~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l 332 (332)
|.++.++++|+.|++++|+++++++..|+.++.|+.|
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 306 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEE
Confidence 2245677889999999999999888888888887653
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=6.5e-29 Score=234.71 Aligned_cols=275 Identities=23% Similarity=0.273 Sum_probs=183.0
Q ss_pred CCCCCCCCC--CccCCchhhHhhhhcc-chhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy8550 35 HPGFQNNPK--SNFKSPTEILKSLLII-PFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDC 111 (332)
Q Consensus 35 ~~g~~~~p~--~~~~~~~~~~~~l~~i-P~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c 111 (332)
+.+.+.+|. ..++.+++....+..+ |..++++.+|+.|+++++......+ +...
T Consensus 19 ~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~-----------------------~~~~ 75 (455)
T 3v47_A 19 NRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-----------------------NNTF 75 (455)
T ss_dssp SSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-----------------------TTTT
T ss_pred CCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC-----------------------cccc
Confidence 445555553 2245555555555555 6668888888888888776543211 1111
Q ss_pred cccCCCceEEecCCCcccc-CCCCC--CCccEEEeecCCCcc-chhh--hcCCCCCcEEEeecCcCcccCCCC-CCCCCC
Q psy8550 112 DCNDETLVVTCKEANLDVI-PITLN--PSIQRLVLKYNRIKT-VDSA--IQFYSSLQHVDLSHNQLVNIPIRG-FEPQEK 184 (332)
Q Consensus 112 ~c~~~~~~~~c~~~~l~~l-p~~~~--~~L~~L~l~~~~l~~-l~~~--~~~l~~L~~L~l~~~~l~~~~~~~-~~~l~~ 184 (332)
.....++.++..++.+..+ |..+. ++|++|++++|.++. ++.. +..+++|++|++++|.+..+.+.. +..+++
T Consensus 76 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp TTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred cccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 2223344555555555544 32332 455555555555553 2222 555555555555555555554333 455555
Q ss_pred CcEEEcCCCcccccCccccCCC----------------------------------------------------------
Q psy8550 185 LVELQLNHNKLSSVNNKTFIGL---------------------------------------------------------- 206 (332)
Q Consensus 185 L~~L~l~~n~l~~~~~~~~~~l---------------------------------------------------------- 206 (332)
|++|++++|.++++.+..+..+
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 5555555555554444333221
Q ss_pred ---------------------------------------CCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccC
Q psy8550 207 ---------------------------------------KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247 (332)
Q Consensus 207 ---------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 247 (332)
++|++|++++|.++..++..++.+++|+.|++++|.++.+.
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 35666666666666666666788889999999999999888
Q ss_pred hhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCC
Q psy8550 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGD 327 (332)
Q Consensus 248 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~ 327 (332)
+..+..+++|+.|++++|.++++++..++.+++|+.|++++|+++++.+.+|.++++|++|++++|+++++++..|+.++
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence 88888899999999999999988888888899999999999999998888899999999999999999999988888888
Q ss_pred CcccC
Q psy8550 328 YLHWI 332 (332)
Q Consensus 328 ~L~~l 332 (332)
.|+.|
T Consensus 396 ~L~~L 400 (455)
T 3v47_A 396 SLQKI 400 (455)
T ss_dssp TCCEE
T ss_pred cccEE
Confidence 88753
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=5.9e-29 Score=236.61 Aligned_cols=273 Identities=20% Similarity=0.234 Sum_probs=208.1
Q ss_pred CCCCCCCCCC---ccCCchhhHhhhhcc-chhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy8550 35 HPGFQNNPKS---NFKSPTEILKSLLII-PFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPD 110 (332)
Q Consensus 35 ~~g~~~~p~~---~~~~~~~~~~~l~~i-P~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 110 (332)
..++..+|.. .+..+++....+..+ |..++++.+|+.|++++|.+....+ ..
T Consensus 20 ~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------------------------~~ 75 (477)
T 2id5_A 20 RKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP------------------------GA 75 (477)
T ss_dssp SCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT------------------------TT
T ss_pred CCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh------------------------hh
Confidence 3455556643 335555555666666 4579999999999999887776532 11
Q ss_pred CcccCCCceEEecCCCccccCCCCC---CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCc
Q psy8550 111 CDCNDETLVVTCKEANLDVIPITLN---PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLV 186 (332)
Q Consensus 111 c~c~~~~~~~~c~~~~l~~lp~~~~---~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 186 (332)
......++.++..++.+..+|.... ++|++|++++|.++.+++ .+..+++|++|++++|.+..+.+..|..+++|+
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence 1223345677777777777776432 677888888888776544 677778888888888888777777777778888
Q ss_pred EEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCC------------------------CCcEeeccCCC
Q psy8550 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS------------------------HLEELDLGQNR 242 (332)
Q Consensus 187 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------------------------~L~~L~L~~n~ 242 (332)
+|++++|.++++++..|.++++|+.|++++|.+..+++..|..++ +|+.|++++|.
T Consensus 156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred EEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 888888777777766777777777777777777666655454444 55566666677
Q ss_pred CcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccc
Q psy8550 243 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHS 322 (332)
Q Consensus 243 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 322 (332)
++.+++..+..+++|+.|++++|.++++++..|..+++|+.|++++|+++++.+.+|.++++|+.|++++|+++++++..
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence 88787778899999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccc
Q psy8550 323 MALGDYLHW 331 (332)
Q Consensus 323 ~~~l~~L~~ 331 (332)
|..++.|+.
T Consensus 316 ~~~l~~L~~ 324 (477)
T 2id5_A 316 FHSVGNLET 324 (477)
T ss_dssp BSCGGGCCE
T ss_pred cCCCcccCE
Confidence 988887764
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.7e-28 Score=221.27 Aligned_cols=219 Identities=26% Similarity=0.443 Sum_probs=160.0
Q ss_pred CCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCC
Q psy8550 104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQ 182 (332)
Q Consensus 104 ~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 182 (332)
...||..|.|. ++.++|.+..++.+|..+++.++.|++++|.++.+++ .+.++++|++|++++|.++.+.+..|+.+
T Consensus 22 ~~~cp~~c~c~--l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (330)
T 1xku_A 22 GPVCPFRCQCH--LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99 (330)
T ss_dssp CCCCCTTCEEE--TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred cCCCCCCCcCC--CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence 35699999986 4579999999999999999999999999999998887 89999999999999999999988999999
Q ss_pred CCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcc--cChhhcCCCCCCcEE
Q psy8550 183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR--IDQACFEGLTALRIL 260 (332)
Q Consensus 183 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L 260 (332)
++|++|++++|.++.++...+ ++|++|++++|.++.+++..+..+++|+.|++++|.+.. +.+..+..+++|+.|
T Consensus 100 ~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp TTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 999999999999988754332 678888888888888887777778888888888887753 445556666666666
Q ss_pred eCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcc
Q psy8550 261 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLH 330 (332)
Q Consensus 261 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~ 330 (332)
++++|.++.++...+ ++|+.|++++|.+++..+..+.++++|+.|++++|+++++++..|..++.|+
T Consensus 177 ~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 243 (330)
T 1xku_A 177 RIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243 (330)
T ss_dssp ECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred ECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence 666666655543211 3444444444444444444444444444444444444444444444444443
No 13
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.6e-28 Score=221.56 Aligned_cols=216 Identities=25% Similarity=0.401 Sum_probs=153.1
Q ss_pred CCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCC
Q psy8550 104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQ 182 (332)
Q Consensus 104 ~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 182 (332)
...||..|.|. ++.++|.++.++.+|..++++++.|++++|.++.+++ .+.++++|++|++++|.++.+.+..|+.+
T Consensus 24 ~~~cp~~c~c~--l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 24 SAMCPFGCHCH--LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp -CCCCSSCEEE--TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred cCCCCCCCccc--CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence 35699999886 4579999999999999999999999999999998865 89999999999999999999988899999
Q ss_pred CCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCc------------------
Q psy8550 183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS------------------ 244 (332)
Q Consensus 183 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------ 244 (332)
++|++|++++|.++.+++..+ ++|++|++++|.++.+++..+..+++|+.|++++|.++
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~ 178 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCB
T ss_pred CCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEE
Confidence 999999999998887754332 56666666666666666655566666666666555553
Q ss_pred ----------------------------ccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy8550 245 ----------------------------RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 296 (332)
Q Consensus 245 ----------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 296 (332)
.+.+..+..+++|+.|++++|.++++++..++.+++|+.|++++|+++.+++
T Consensus 179 l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 258 (332)
T 2ft3_A 179 ISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258 (332)
T ss_dssp CCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT
T ss_pred CcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh
Confidence 3333344445555555555555555555555555566666666666554433
Q ss_pred hhcCCCCCCCEEEccCCCCCCcccccccC
Q psy8550 297 GAFNGLGRLSALDLRGAGLTNMMGHSMAL 325 (332)
Q Consensus 297 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~ 325 (332)
.+..+++|+.|++++|+++++++..|..
T Consensus 259 -~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 259 -GLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp -TGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred -hhhcCccCCEEECCCCCCCccChhHccc
Confidence 3555566666666666666665555543
No 14
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.96 E-value=1.5e-28 Score=224.99 Aligned_cols=223 Identities=23% Similarity=0.354 Sum_probs=197.0
Q ss_pred CCCCC-CcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCc-ccCCCCCCCC
Q psy8550 106 FCPPD-CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLV-NIPIRGFEPQ 182 (332)
Q Consensus 106 ~~p~~-c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~-~~~~~~~~~l 182 (332)
.||.. |.|... .+.|.++.++++|.++++++++|++++|+|+.+|+ +|.++++|++|++++|++. .+++.+|.++
T Consensus 1 gCp~~~C~C~~~--~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L 78 (350)
T 4ay9_X 1 GCHHRICHCSNR--VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78 (350)
T ss_dssp -CCCSSSEEETT--EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred CCCCCccEeeCC--EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence 38865 999754 79999999999999999999999999999999998 7899999999999999975 4777889999
Q ss_pred CCCcE-EEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccC-CCCcccChhhcCCCC-CCcE
Q psy8550 183 EKLVE-LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ-NRISRIDQACFEGLT-ALRI 259 (332)
Q Consensus 183 ~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~ 259 (332)
++++. +.+++|+++.++|.+|.++++|++|++++|.++.+++..+....++..+++.+ +.+..+++..|..+. .++.
T Consensus 79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158 (350)
T ss_dssp TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence 98776 56678999999999999999999999999999999987777777888899865 688888887787765 6889
Q ss_pred EeCCCCCCCCcCcccccCCCCccEEEcCC-CcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 260 LYLDDNQLRSVPTPSFIYLGMLAELRVGL-NVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 260 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
|++++|+++.+++..|. ..+++.+++++ |.++.+++++|.++++|++||+++|+|+++|+..|..++.|+.
T Consensus 159 L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~ 230 (350)
T 4ay9_X 159 LWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230 (350)
T ss_dssp EECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEEC
T ss_pred hccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhh
Confidence 99999999999986664 46899999974 7899999899999999999999999999999999998888764
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.1e-27 Score=217.13 Aligned_cols=268 Identities=19% Similarity=0.203 Sum_probs=227.5
Q ss_pred CCCCCCCCC---ccCCchhhHhhhhccch-hhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy8550 36 PGFQNNPKS---NFKSPTEILKSLLIIPF-EVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDC 111 (332)
Q Consensus 36 ~g~~~~p~~---~~~~~~~~~~~l~~iP~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c 111 (332)
.++..+|.. .+..+++....+..+|. .++++.+|+.|++++|.+....+ ...
T Consensus 41 ~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~ 96 (330)
T 1xku_A 41 LGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP------------------------GAF 96 (330)
T ss_dssp SCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT------------------------TTT
T ss_pred CCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH------------------------HHh
Confidence 455556542 34556666666777776 69999999999999988776532 222
Q ss_pred cccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcc--cCCCCCCCCCCCcEE
Q psy8550 112 DCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVN--IPIRGFEPQEKLVEL 188 (332)
Q Consensus 112 ~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L 188 (332)
.....++.++..++.++.+|..+++++++|++++|.++.++. .+.++++|++|++++|.+.. +.+..+..+++|++|
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp TTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred cCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 334567789999999999999999999999999999998877 78999999999999999864 666789999999999
Q ss_pred EcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCC
Q psy8550 189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR 268 (332)
Q Consensus 189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 268 (332)
++++|.++.++.. +. ++|++|++++|.++.+++..+..+++|+.|++++|.++.+.+..+..+++|+.|++++|.++
T Consensus 177 ~l~~n~l~~l~~~-~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 177 RIADTNITTIPQG-LP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp ECCSSCCCSCCSS-CC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred ECCCCccccCCcc-cc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 9999999988543 32 79999999999999998888899999999999999999998888999999999999999999
Q ss_pred CcCcccccCCCCccEEEcCCCcCCccCchhcCC------CCCCCEEEccCCCCCC--cccccccCCCCccc
Q psy8550 269 SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG------LGRLSALDLRGAGLTN--MMGHSMALGDYLHW 331 (332)
Q Consensus 269 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~Ls~n~l~~--l~~~~~~~l~~L~~ 331 (332)
.+|. .+..+++|++|++++|+++++++..|.. ...++.+++++|.+.. +++..|..+..|+.
T Consensus 254 ~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 254 KVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp SCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred cCCh-hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence 8877 6888999999999999999998877754 3788999999999874 88889999888864
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.9e-28 Score=230.26 Aligned_cols=164 Identities=24% Similarity=0.367 Sum_probs=125.3
Q ss_pred CCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccc-hhhhcCCCCCcEEEeecCcCc-ccCCCCCCCC
Q psy8550 105 AFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLV-NIPIRGFEPQ 182 (332)
Q Consensus 105 ~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~l 182 (332)
.+||..|.|... .+.|.+..++.+|. +++++++|++++|.++.+ |..++++++|++|++++|.+. .+++..|..+
T Consensus 2 ~p~~~~c~~~~~--~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l 78 (455)
T 3v47_A 2 DPGTSECSVIGY--NAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL 78 (455)
T ss_dssp -----CCEEETT--EEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC
T ss_pred CCccceeEEEcc--ccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccc
Confidence 358899999755 69999999999998 889999999999999977 458889999999999999876 5667788888
Q ss_pred CCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCC--ccccCCCCCCcEeeccCCCCcccChhh-cCCCCCCcE
Q psy8550 183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP--DRLFAPLSHLEELDLGQNRISRIDQAC-FEGLTALRI 259 (332)
Q Consensus 183 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~ 259 (332)
++|++|++++|.++++.|..|+++++|++|++++|.+++.. ...++.+++|++|++++|.++.+.+.. +..+++|++
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence 89999999988888888888888888888888888877532 233667777777777777777665543 566666666
Q ss_pred EeCCCCCCCCcC
Q psy8550 260 LYLDDNQLRSVP 271 (332)
Q Consensus 260 L~L~~n~l~~~~ 271 (332)
|++++|.+.+++
T Consensus 159 L~L~~n~l~~~~ 170 (455)
T 3v47_A 159 LDLTFNKVKSIC 170 (455)
T ss_dssp EECTTCCBSCCC
T ss_pred EeCCCCcccccC
Confidence 666666655443
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=3e-28 Score=238.24 Aligned_cols=191 Identities=23% Similarity=0.249 Sum_probs=164.6
Q ss_pred CCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550 106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184 (332)
Q Consensus 106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~ 184 (332)
.|+..|.|......++|.+..++.+|.+++..+++|++++|.++.+++ .++++++|++|++++|.+..+.+.+|+++++
T Consensus 3 ~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 82 (606)
T 3t6q_A 3 SSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82 (606)
T ss_dssp ---CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred cccCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccc
Confidence 488999998777789999999999999999999999999999998855 8999999999999999999999899999999
Q ss_pred CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCC
Q psy8550 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDD 264 (332)
Q Consensus 185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (332)
|++|++++|.++++.|.+|+++++|++|++++|.++.+++..++.+++|++|++++|.++.+....+..+++|++|++++
T Consensus 83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 162 (606)
T 3t6q_A 83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162 (606)
T ss_dssp CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred cCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc
Confidence 99999999999999999999999999999999999998777788899999999999999887544455688888888888
Q ss_pred CCCCCcCcccccCCCCcc--EEEcCCCcCCccCc
Q psy8550 265 NQLRSVPTPSFIYLGMLA--ELRVGLNVFTTLAD 296 (332)
Q Consensus 265 n~l~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~ 296 (332)
|.++++++..++.+++|+ .|++++|.+++.++
T Consensus 163 n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp SCCCEECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred CcccccChhhhhhhcccceeEEecCCCccCccCh
Confidence 888888776677777666 66666666655444
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.96 E-value=6.1e-28 Score=210.63 Aligned_cols=190 Identities=32% Similarity=0.478 Sum_probs=176.5
Q ss_pred CCCCCC--CcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCC
Q psy8550 105 AFCPPD--CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEP 181 (332)
Q Consensus 105 ~~~p~~--c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 181 (332)
..||.. |.|......++|.++.++.+|..++++++.|++++|.++.+++ .+.++++|++|++++|.++.+++..|..
T Consensus 2 ~~Cp~~~gC~C~~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 81 (251)
T 3m19_A 2 KTCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81 (251)
T ss_dssp --CHHHHSSEEEGGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred ccCCCCCceEcCCCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc
Confidence 358876 9997777789999999999999999999999999999998776 7899999999999999999999888999
Q ss_pred CCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEe
Q psy8550 182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILY 261 (332)
Q Consensus 182 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (332)
+++|++|++++|+++.+++..|.++++|++|++++|.++.+++..|..+++|+.|++++|.++.+++..++.+++|++|+
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 99999999999999999888999999999999999999999998889999999999999999999888899999999999
Q ss_pred CCCCCCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy8550 262 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294 (332)
Q Consensus 262 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 294 (332)
+++|.++++++..+..+++|+.|++++|+++..
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999999999988899999999999999999876
No 19
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=2.3e-27 Score=209.26 Aligned_cols=194 Identities=30% Similarity=0.424 Sum_probs=182.5
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccC
Q psy8550 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRG 216 (332)
Q Consensus 137 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 216 (332)
+.+.++++++.++.+|..+. +++++|++++|.+..+++..|..+++|++|++++|.++.+++..|.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 46789999999999987554 6899999999999999988999999999999999999999888899999999999999
Q ss_pred CCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy8550 217 NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 296 (332)
Q Consensus 217 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 296 (332)
|.++.+++..|..+++|++|++++|.++.+++..|..+++|++|++++|.++++++..|+.+++|+.|++++|.++++++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 99999999888999999999999999999999889999999999999999999999889999999999999999999999
Q ss_pred hhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550 297 GAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332 (332)
Q Consensus 297 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l 332 (332)
..|.++++|+.|++++|+++++++..|+.++.|+.|
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 889999999999999999999999999988888753
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=1e-27 Score=217.73 Aligned_cols=269 Identities=20% Similarity=0.220 Sum_probs=227.5
Q ss_pred CCCCCCCCCCc---cCCchhhHhhhhccc-hhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy8550 35 HPGFQNNPKSN---FKSPTEILKSLLIIP-FEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPD 110 (332)
Q Consensus 35 ~~g~~~~p~~~---~~~~~~~~~~l~~iP-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 110 (332)
..++..+|... ++.++.....+..+| ..++++.+|+.|++++|.+....+..
T Consensus 42 ~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------ 97 (332)
T 2ft3_A 42 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA------------------------ 97 (332)
T ss_dssp SSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG------------------------
T ss_pred CCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH------------------------
Confidence 44566666543 355555555566665 47999999999999998877663221
Q ss_pred CcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcc--cCCCCCCCCCCCcE
Q psy8550 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVN--IPIRGFEPQEKLVE 187 (332)
Q Consensus 111 c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~ 187 (332)
......++.++..++.+..+|..+++++++|++++|.++.+++ .+.++++|++|++++|.+.. +.+..+..+ +|++
T Consensus 98 ~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp STTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred hhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 1223456789999999999999998999999999999998887 68999999999999999964 667788888 9999
Q ss_pred EEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCC
Q psy8550 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267 (332)
Q Consensus 188 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 267 (332)
|++++|.++.++. .+. ++|++|++++|.++.+++..+..+++|+.|++++|.++.+.+..+..+++|+.|++++|.+
T Consensus 177 L~l~~n~l~~l~~-~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 177 LRISEAKLTGIPK-DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp CBCCSSBCSSCCS-SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred EECcCCCCCccCc-ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 9999999999854 333 7899999999999999988889999999999999999999888899999999999999999
Q ss_pred CCcCcccccCCCCccEEEcCCCcCCccCchhcCCC------CCCCEEEccCCCCC--CcccccccCCCCcccC
Q psy8550 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL------GRLSALDLRGAGLT--NMMGHSMALGDYLHWI 332 (332)
Q Consensus 268 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l------~~L~~L~Ls~n~l~--~l~~~~~~~l~~L~~l 332 (332)
+.+|. .++.+++|+.|++++|+++++++..|... ..++.|++++|.+. ++++.+|..++.|+.+
T Consensus 254 ~~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 254 SRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp CBCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred eecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence 98887 58899999999999999999988777653 67899999999998 8899999999888753
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=9.1e-30 Score=255.72 Aligned_cols=216 Identities=21% Similarity=0.204 Sum_probs=137.2
Q ss_pred CCceEEecCCCcc-ccCCCCC--CCccEEEeecCCCc-cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcC
Q psy8550 116 ETLVVTCKEANLD-VIPITLN--PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191 (332)
Q Consensus 116 ~~~~~~c~~~~l~-~lp~~~~--~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 191 (332)
.++.++..++.+. .+|..+. ++++.|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 3444555555444 3333332 45666666666655 455566666666666666666665555566666666666666
Q ss_pred CCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChh----------------------
Q psy8550 192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQA---------------------- 249 (332)
Q Consensus 192 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------- 249 (332)
+|++++..|.+++++++|++|++++|.+.+..+..++.+++|+.|++++|.+++..|.
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 6666666666666666666666666666644444456666666666666655422221
Q ss_pred ------------------------------------------------hcCCCCCCcEEeCCCCCCCCcCcccccCCCCc
Q psy8550 250 ------------------------------------------------CFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281 (332)
Q Consensus 250 ------------------------------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 281 (332)
.++.+++|+.|++++|++++..|..++.+++|
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 658 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence 12234556677777777776666677777777
Q ss_pred cEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 282 AELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 282 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
+.|++++|++++.+|..++++++|+.|||++|++++..|..|+.++.|+.
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 77777777777777777777777777777777777777777777776654
No 22
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=5.8e-27 Score=208.85 Aligned_cols=202 Identities=26% Similarity=0.285 Sum_probs=185.4
Q ss_pred cccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEc
Q psy8550 112 DCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQL 190 (332)
Q Consensus 112 ~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 190 (332)
.+......++|.++.++.+|.+++++++.|++++|.++.+++ .+..+++|++|++++|.++.+++. +.+++|++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~L 84 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDL 84 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEEC
T ss_pred cccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEEC
Confidence 334567789999999999999999999999999999997765 899999999999999999998753 78999999999
Q ss_pred CCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCc
Q psy8550 191 NHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSV 270 (332)
Q Consensus 191 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 270 (332)
++|+++.+ |..+.++++|++|++++|.++.+++..|..+++|+.|++++|+++.+++..|..+++|+.|++++|+++++
T Consensus 85 s~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 99999987 56788999999999999999999998899999999999999999999988899999999999999999999
Q ss_pred CcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCC
Q psy8550 271 PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317 (332)
Q Consensus 271 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 317 (332)
++..|..+++|+.|++++|+++.+++ .+....+|+.+++++|.+..
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip~-~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCCCSEEECCSCCBCC
T ss_pred CHHHhcCcCCCCEEECCCCcCCccCh-hhcccccCCeEEeCCCCccC
Confidence 99888999999999999999998776 45567899999999998865
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=7.1e-27 Score=220.19 Aligned_cols=199 Identities=30% Similarity=0.463 Sum_probs=147.7
Q ss_pred CceEEecCCCccccCCC-CC--CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCC
Q psy8550 117 TLVVTCKEANLDVIPIT-LN--PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192 (332)
Q Consensus 117 ~~~~~c~~~~l~~lp~~-~~--~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 192 (332)
.+.++..++.+..++.. +. ++|++|++++|.++.++. .+.++++|++|++++|.++.+++..|..+++|++|++++
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 145 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCS
T ss_pred CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCC
Confidence 34556666666555432 21 455566666665555443 555555555555555555555555555555555555555
Q ss_pred Cccccc-------------------------CccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccC
Q psy8550 193 NKLSSV-------------------------NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247 (332)
Q Consensus 193 n~l~~~-------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 247 (332)
|.++.+ .+..|.++++|++|++++|.++.+|. +..+++|+.|++++|.++.+.
T Consensus 146 N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEEC
T ss_pred CcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc--cCCCcccCEEECCCCccCccC
Confidence 555444 34456667777777777777777764 577888999999999999998
Q ss_pred hhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCC
Q psy8550 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317 (332)
Q Consensus 248 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 317 (332)
+..|..+++|+.|++++|.++++++..|..+++|+.|++++|+++++++..|..+++|+.|+|++|.+..
T Consensus 224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 8999999999999999999999999999999999999999999999999999999999999999998754
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=5.6e-29 Score=250.00 Aligned_cols=217 Identities=19% Similarity=0.181 Sum_probs=181.1
Q ss_pred CCceEEecCCCcc-ccCCCCC--CCccEEEeecCCCc-cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcC
Q psy8550 116 ETLVVTCKEANLD-VIPITLN--PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191 (332)
Q Consensus 116 ~~~~~~c~~~~l~-~lp~~~~--~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 191 (332)
.++.+...++.+. .+|..+. +++++|++++|.++ .+|..++.+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 4556777777766 5555554 78888888888887 667788888899999999998887777888888999999999
Q ss_pred CCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcC
Q psy8550 192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 271 (332)
Q Consensus 192 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 271 (332)
+|++++..|..+.++++|++|++++|.+++..+..++.+++|+.|++++|.+++..|..++.+++|+.|++++|.+.+..
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 99998888888999999999999999998666666788899999999999998777888889999999999999877432
Q ss_pred cc----------------------------------------------------------------------cccCCCCc
Q psy8550 272 TP----------------------------------------------------------------------SFIYLGML 281 (332)
Q Consensus 272 ~~----------------------------------------------------------------------~~~~l~~L 281 (332)
|. .++.+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 21 23345678
Q ss_pred cEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550 282 AELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332 (332)
Q Consensus 282 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l 332 (332)
+.|++++|++++.+|..++++++|+.|+|++|++++..|..|+.++.|+.|
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence 999999999999999999999999999999999999999999999888754
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=6.8e-27 Score=221.05 Aligned_cols=180 Identities=30% Similarity=0.453 Sum_probs=134.6
Q ss_pred CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCC-CcccccCccccCCCCCCCEEE
Q psy8550 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH-NKLSSVNNKTFIGLKSLKVLN 213 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 213 (332)
++|++|++++|.++.+++ .+..+++|++|++++|.+..+++..|..+++|++|++++ +.+..+++..|.++++|++|+
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 344444444444444443 344444555555555554444444444555555555544 334444444566777788888
Q ss_pred ccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy8550 214 LRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293 (332)
Q Consensus 214 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 293 (332)
+++|.++.+|. +..+++|+.|++++|.++.+.+..|..+++|+.|++++|.++++++..|..+++|+.|++++|++++
T Consensus 203 L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 203 LGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 88888887764 5778899999999999999999999999999999999999999999899999999999999999999
Q ss_pred cCchhcCCCCCCCEEEccCCCCCC
Q psy8550 294 LADGAFNGLGRLSALDLRGAGLTN 317 (332)
Q Consensus 294 ~~~~~~~~l~~L~~L~Ls~n~l~~ 317 (332)
+++..|..+++|+.|++++|.+..
T Consensus 281 ~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 281 LPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cChHHhccccCCCEEEccCCCcCC
Confidence 999999999999999999998764
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=2.2e-28 Score=240.63 Aligned_cols=262 Identities=18% Similarity=0.251 Sum_probs=144.9
Q ss_pred hccchhhhhhhhhhhhhcCccc-cch-hhhhHHHHHH-----HHHHHHHHhhcCCCCCCC--CCcccCCCceEEecCCCc
Q psy8550 57 LIIPFEVRILNKLRIFINDSVL-FSS-VSDITMWSLL-----VTTALLLLVHQASAFCPP--DCDCNDETLVVTCKEANL 127 (332)
Q Consensus 57 ~~iP~~~~~l~~L~~l~~~~~~-~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~--~c~c~~~~~~~~c~~~~l 127 (332)
..+|+.++++.+|+.|++++|. +++ ..+..+..+. ..+..+....+.....|. .......+..++..++.+
T Consensus 263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCC
T ss_pred ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcC
Confidence 6889999999999999999997 877 4444433321 011111111222224454 334444566777777777
Q ss_pred c-ccCCCCC--CCccEEEeecCCCccchhhhcCCCC-CcEEEeecCcCcccCCCCCCCCC--CCcEEEcCCCcccccCcc
Q psy8550 128 D-VIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSS-LQHVDLSHNQLVNIPIRGFEPQE--KLVELQLNHNKLSSVNNK 201 (332)
Q Consensus 128 ~-~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~-L~~L~l~~~~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~ 201 (332)
. .+| .+. +++++|++++|.++.+|..+..+++ |++|++++|.++.++ ..+..++ +|++|++++|.+++..|.
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP-NIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCC-SCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred ccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccc-hhhhhcccCccCEEECcCCcCCCcchh
Confidence 7 676 443 5666666666666666666666666 666666666666554 3343332 555555555555554444
Q ss_pred ccC-------CCCCCCEEEccCCCCCCCCccccCCCC-------------------------------CCcEeeccCCCC
Q psy8550 202 TFI-------GLKSLKVLNLRGNFLEDLPDRLFAPLS-------------------------------HLEELDLGQNRI 243 (332)
Q Consensus 202 ~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~-------------------------------~L~~L~L~~n~l 243 (332)
.|. .+.+|++|++++|.++.+|+..+..++ +|+.|++++|.+
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC
Confidence 444 444455555555544444444433344 455555555555
Q ss_pred cccChhhcC--CCCCCcEEeCCCCCCCCcCcccccCCCCccEEEc------CCCcCCccCchhcCCCCCCCEEEccCCCC
Q psy8550 244 SRIDQACFE--GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV------GLNVFTTLADGAFNGLGRLSALDLRGAGL 315 (332)
Q Consensus 244 ~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 315 (332)
+.++.. +. .+++|+.|++++|.++++|. .++.+++|+.|++ ++|++.+..|..+.++++|++|++++|++
T Consensus 501 ~~lp~~-~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 501 TKLSDD-FRATTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CBCCGG-GSTTTCTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CccChh-hhhccCCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 544322 32 45555555555555555433 4445555555555 33445555555555556666666666666
Q ss_pred CCccccc
Q psy8550 316 TNMMGHS 322 (332)
Q Consensus 316 ~~l~~~~ 322 (332)
+.+|...
T Consensus 579 ~~ip~~~ 585 (636)
T 4eco_A 579 RKVNEKI 585 (636)
T ss_dssp CBCCSCC
T ss_pred CccCHhH
Confidence 5555443
No 27
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2e-27 Score=215.51 Aligned_cols=214 Identities=18% Similarity=0.177 Sum_probs=193.8
Q ss_pred CCCceEEecCCCccccCCCCC--CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCC
Q psy8550 115 DETLVVTCKEANLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192 (332)
Q Consensus 115 ~~~~~~~c~~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 192 (332)
.....+++.++.+..+|..+. +++++|++++|.++.+|..++.+++|++|++++|.+..++ ..+..+++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP-ASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCC-GGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCc-HHHhcCcCCCEEECCC
Confidence 456689999999999998775 7999999999999999999999999999999999999775 6799999999999999
Q ss_pred CcccccCccccCC---------CCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCC
Q psy8550 193 NKLSSVNNKTFIG---------LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD 263 (332)
Q Consensus 193 n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (332)
|++.+..|..+.. +++|++|++++|.++.+|.. ++.+++|++|++++|.++.+++ .+..+++|++|+++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLR 237 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEECc
Confidence 8877777776654 99999999999999988876 6889999999999999998865 58899999999999
Q ss_pred CCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 264 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 264 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
+|.+.+..+..++.+++|+.|++++|.+.+..|..++++++|+.|++++|++.+..|..+..++.|+.
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 99998888878999999999999999999999989999999999999999998888889999988864
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.8e-27 Score=232.66 Aligned_cols=261 Identities=21% Similarity=0.263 Sum_probs=210.6
Q ss_pred cCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCC
Q psy8550 46 FKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEA 125 (332)
Q Consensus 46 ~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~ 125 (332)
+..++.....+..+|+.++.+.+|+.|.+++|.+....+.. ......+..++..++
T Consensus 280 L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~------------------------~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS------------------------ASNFPSLTHLSIKGN 335 (606)
T ss_dssp CSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC------------------------GGGCTTCSEEECCSC
T ss_pred CCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh------------------------hhccCcCCEEECCCC
Confidence 44555555666778888888888888888887776553211 122345567888777
Q ss_pred Ccc-ccCCC-C--CCCccEEEeecCCCccc---hhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCccccc
Q psy8550 126 NLD-VIPIT-L--NPSIQRLVLKYNRIKTV---DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSV 198 (332)
Q Consensus 126 ~l~-~lp~~-~--~~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 198 (332)
.+. .+|.. + .+++++|++++|.++.+ +..+..+++|++|++++|.+..+.+..|..+++|++|++++|.+.+.
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 665 55554 2 27899999999998866 45788899999999999999988888899999999999999998877
Q ss_pred Ccc-ccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCccc---ChhhcCCCCCCcEEeCCCCCCCCcCccc
Q psy8550 199 NNK-TFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI---DQACFEGLTALRILYLDDNQLRSVPTPS 274 (332)
Q Consensus 199 ~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 274 (332)
.+. .+.++++|++|++++|.++..++..++.+++|++|++++|.+++. .+..+..+++|+.|++++|.++++++..
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence 554 488899999999999999988888788899999999999988762 2256788899999999999999998888
Q ss_pred ccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 275 FIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 275 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
|+.+++|+.|++++|++++.++..+.+++.| .|++++|+++++++..|..++.|+.
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT 551 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence 9999999999999999999998899999999 9999999999999988877766654
No 29
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.6e-26 Score=205.32 Aligned_cols=203 Identities=28% Similarity=0.363 Sum_probs=188.9
Q ss_pred CCCceEEecCCCccccCCC-CC--CCccEEEeecCCCccc-hhhhcCCCCCcEEEeecCc-CcccCCCCCCCCCCCcEEE
Q psy8550 115 DETLVVTCKEANLDVIPIT-LN--PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQ-LVNIPIRGFEPQEKLVELQ 189 (332)
Q Consensus 115 ~~~~~~~c~~~~l~~lp~~-~~--~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~ 189 (332)
...+.++..++.+..+|.. +. +++++|++++|.++.+ +..+..+++|++|++++|. +..+.+..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 3566899999999988854 32 7999999999999987 5589999999999999997 9999889999999999999
Q ss_pred cCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCC
Q psy8550 190 LNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269 (332)
Q Consensus 190 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 269 (332)
+++|.++++.+..|.++++|++|++++|.++.+++..++.+++|+.|++++|.++.+++..+..+++|+.|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 99999999999999999999999999999999999888999999999999999999988889999999999999999999
Q ss_pred cCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCC
Q psy8550 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317 (332)
Q Consensus 270 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 317 (332)
+.+..++.+++|+.|++++|.++++++..+..+++|+.|++++|.+..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 988899999999999999999999999889999999999999999874
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=4.2e-28 Score=218.58 Aligned_cols=253 Identities=17% Similarity=0.176 Sum_probs=129.2
Q ss_pred CCCCCCCCC---CccCCchhhHhhhh---ccchhhhhhhhhhhhhcCc-cccchhhhhHHHHHHHHHHHHHHhhcCCCCC
Q psy8550 35 HPGFQNNPK---SNFKSPTEILKSLL---IIPFEVRILNKLRIFINDS-VLFSSVSDITMWSLLVTTALLLLVHQASAFC 107 (332)
Q Consensus 35 ~~g~~~~p~---~~~~~~~~~~~~l~---~iP~~~~~l~~L~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (332)
|.|+..-.. ..++.+++....+. .+|+.++++.+|+.|++++ +.+.+..+
T Consensus 38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p----------------------- 94 (313)
T 1ogq_A 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP----------------------- 94 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC-----------------------
T ss_pred CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCC-----------------------
Confidence 566654332 23455555555554 6888999999999888773 55554321
Q ss_pred CCCCcccCCCceEEecCCCcc-ccCCCCC--CCccEEEeecCCCc-cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCC
Q psy8550 108 PPDCDCNDETLVVTCKEANLD-VIPITLN--PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE 183 (332)
Q Consensus 108 p~~c~c~~~~~~~~c~~~~l~-~lp~~~~--~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~ 183 (332)
........++.++..++.+. .+|..+. +++++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..++
T Consensus 95 -~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 95 -PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp -GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred -hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence 11122233344444444444 3443332 45555555555554 4444555555555555555555533334444444
Q ss_pred -CCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeC
Q psy8550 184 -KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL 262 (332)
Q Consensus 184 -~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 262 (332)
+|++|++++|.+++..|..+..+. |++|++++|.++..++..+..+++|+.|++++|.++...+. +..+++|++|++
T Consensus 174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L 251 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDL 251 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEEC
T ss_pred hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEEC
Confidence 555555555555544444454444 55555555555544444445555555555555555443333 444455555555
Q ss_pred CCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCC
Q psy8550 263 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 314 (332)
Q Consensus 263 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 314 (332)
++|.+++..+..++.+++|+.|++++|++++.+|.. +.+++|+.+++++|.
T Consensus 252 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 555555444444555555555555555555444432 444555555555554
No 31
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.95 E-value=7e-27 Score=198.02 Aligned_cols=204 Identities=26% Similarity=0.406 Sum_probs=180.1
Q ss_pred CCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCC
Q psy8550 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185 (332)
Q Consensus 107 ~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 185 (332)
||..|.|.. ..+.|.+..+..+|..+++++++|++++|.++.+++ .+..+++|++|++++|+++.+++..|..+++|
T Consensus 1 Cp~~C~C~~--~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 1 CPSRCSCSG--TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78 (208)
T ss_dssp CCTTCEEET--TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcCCCEECC--CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc
Confidence 899999964 479999999999999999999999999999998887 57899999999999999999998889999999
Q ss_pred cEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCC
Q psy8550 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265 (332)
Q Consensus 186 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 265 (332)
++|++++|.++++++..|.++++|++|++++|.++.+++..+..+++|+.|++++|.++.+++..+..+++|+.|++++|
T Consensus 79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 99999999999998888999999999999999999999988899999999999999999998888899999999999999
Q ss_pred CCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550 266 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM 323 (332)
Q Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 323 (332)
.+.+ .+++|+.|++.+|++++..|..++.++. +...|...+-+...+
T Consensus 159 ~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~~ 205 (208)
T 2o6s_A 159 PWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRSI 205 (208)
T ss_dssp CBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGGC
T ss_pred Ceec-------CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCcceee
Confidence 6653 4568899999999999998888887654 555555554444443
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=3.4e-27 Score=230.81 Aligned_cols=220 Identities=26% Similarity=0.363 Sum_probs=197.5
Q ss_pred CCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEE
Q psy8550 110 DCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVEL 188 (332)
Q Consensus 110 ~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 188 (332)
.|.|......++|.+..++.+|.++++++++|++++|.++.+++ .+.++++|++|++++|.++.+++.+|.++++|++|
T Consensus 6 ~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L 85 (606)
T 3vq2_A 6 PCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL 85 (606)
T ss_dssp CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence 37776556689999999999999999999999999999998877 89999999999999999999998999999999999
Q ss_pred EcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccC-hhhcCCCCCCcEEeCCCCCC
Q psy8550 189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID-QACFEGLTALRILYLDDNQL 267 (332)
Q Consensus 189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l 267 (332)
++++|.++++.|.+|+++++|++|++++|.++.+++..++.+++|++|++++|.++.+. |..++++++|++|++++|.+
T Consensus 86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred ECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 99999999999999999999999999999999999877899999999999999998743 77799999999999999999
Q ss_pred CCcCcccccCCCCcc----EEEcCCCcCCccCchhcCCCCCCCEEEccCCCCC-CcccccccCCCCcc
Q psy8550 268 RSVPTPSFIYLGMLA----ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT-NMMGHSMALGDYLH 330 (332)
Q Consensus 268 ~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~l~~L~ 330 (332)
+++++..++.+.+|+ .+++++|.++++++..+... +|+.|++++|.++ ...+..++.++.|+
T Consensus 166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 232 (606)
T 3vq2_A 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLH 232 (606)
T ss_dssp CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCE
T ss_pred eecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccc
Confidence 999887787766554 89999999999999777765 8999999999887 45555566666554
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.3e-26 Score=207.95 Aligned_cols=207 Identities=24% Similarity=0.343 Sum_probs=179.2
Q ss_pred ccCCCceEEecCCCcccc---CCCC--CCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCC-CCCCCCCCCc
Q psy8550 113 CNDETLVVTCKEANLDVI---PITL--NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPI-RGFEPQEKLV 186 (332)
Q Consensus 113 c~~~~~~~~c~~~~l~~l---p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~ 186 (332)
....++.++..++.+..+ |..+ .+++++|++++|.++.+|..+..+++|++|++++|.+..+++ ..+..+++|+
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 129 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC
T ss_pred ccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCC
Confidence 334556677777666544 2111 267888888888888888888889999999999999988875 6789999999
Q ss_pred EEEcCCCcccccCccccCCCCCCCEEEccCCCCCC-CCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCC
Q psy8550 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED-LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265 (332)
Q Consensus 187 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 265 (332)
+|++++|.+.+..+..|.++++|++|++++|.+++ ..+..+..+++|+.|++++|.++.+.+..+..+++|+.|++++|
T Consensus 130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp EEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC
Confidence 99999999999989999999999999999999986 44455789999999999999999998888999999999999999
Q ss_pred CCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCC-CCCCEEEccCCCCCCcc
Q psy8550 266 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL-GRLSALDLRGAGLTNMM 319 (332)
Q Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~l~ 319 (332)
.++++++..+..+++|+.|++++|++++..+..+..+ ++|++|++++|.+++..
T Consensus 210 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 9999998889999999999999999999999889988 49999999999997643
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=9.7e-27 Score=230.60 Aligned_cols=182 Identities=24% Similarity=0.353 Sum_probs=135.1
Q ss_pred CcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEE
Q psy8550 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQ 189 (332)
Q Consensus 111 c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 189 (332)
|.|.. ..++|.+..++.+|.++++++++|++++|.++.+++ .+.++++|++|++++|.+..+.+..|+.+++|++|+
T Consensus 2 C~~~~--~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 79 (680)
T 1ziw_A 2 CTVSH--EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79 (680)
T ss_dssp --CBS--SEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEE
T ss_pred ceeEC--CeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEE
Confidence 55653 369999999999999898999999999999887776 688888888888888888888777777888888888
Q ss_pred cCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCC
Q psy8550 190 LNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269 (332)
Q Consensus 190 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 269 (332)
+++|.++.+++.+|+++++|++|++++|.++.+++..|+.+++|++|++++|.++.+.+..++++++|++|++++|.+++
T Consensus 80 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 88888887777678888888888888888877777667777788888888877777766666777777777777776666
Q ss_pred cCccccc--CCCCccEEEcCCCcCCcc
Q psy8550 270 VPTPSFI--YLGMLAELRVGLNVFTTL 294 (332)
Q Consensus 270 ~~~~~~~--~l~~L~~L~L~~n~l~~~ 294 (332)
+++..++ .+++|+.|++++|.+++.
T Consensus 160 ~~~~~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 160 LKSEELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp BCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred cCHHHhhccccccccEEECCCCccccc
Confidence 5543332 224444444444444433
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=5.7e-27 Score=211.15 Aligned_cols=214 Identities=19% Similarity=0.214 Sum_probs=166.6
Q ss_pred CCceEEecCCCcc---ccCCCCC--CCccEEEeec-CCCc-cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEE
Q psy8550 116 ETLVVTCKEANLD---VIPITLN--PSIQRLVLKY-NRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVEL 188 (332)
Q Consensus 116 ~~~~~~c~~~~l~---~lp~~~~--~~L~~L~l~~-~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 188 (332)
....++..++.+. .+|..+. +++++|++++ |.+. .+|..++++++|++|++++|.+.+..+..|..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 3455666777776 4676654 7899999995 8877 788889999999999999999987777889999999999
Q ss_pred EcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCC-CCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCC
Q psy8550 189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS-HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267 (332)
Q Consensus 189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 267 (332)
++++|.+++..|..|.++++|++|++++|.++...+..+..+. +|+.|++++|.+++..+..+..+. |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 9999999988788899999999999999999843333456676 888888888888866666677665 77788887777
Q ss_pred CCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 268 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
++.++..++.+++|+.|++++|.+++.++. +..+++|++|++++|++++..|..|..++.|+.
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence 777666777777777777777777766663 666777777777777777666666776666654
No 36
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.9e-27 Score=234.07 Aligned_cols=202 Identities=19% Similarity=0.235 Sum_probs=156.2
Q ss_pred CceEEecCCCccccCCCCC----CCccEEEeecCCCcc-chhhhc-------CCCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550 117 TLVVTCKEANLDVIPITLN----PSIQRLVLKYNRIKT-VDSAIQ-------FYSSLQHVDLSHNQLVNIPIRGFEPQEK 184 (332)
Q Consensus 117 ~~~~~c~~~~l~~lp~~~~----~~L~~L~l~~~~l~~-l~~~~~-------~l~~L~~L~l~~~~l~~~~~~~~~~l~~ 184 (332)
+..++..++.+..+|..+. +++++|++++|.++. +|..+. .+++|++|++++|.++.+++..+..+++
T Consensus 379 L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~ 458 (636)
T 4eco_A 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458 (636)
T ss_dssp CCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC
T ss_pred CcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC
Confidence 5566666666666665443 256777777777663 344555 5667788888888877777666667888
Q ss_pred CcEEEcCCCcccccCccccCCCC-------CCCEEEccCCCCCCCCcccc-CCCCCCcEeeccCCCCcccChhhcCCCCC
Q psy8550 185 LVELQLNHNKLSSVNNKTFIGLK-------SLKVLNLRGNFLEDLPDRLF-APLSHLEELDLGQNRISRIDQACFEGLTA 256 (332)
Q Consensus 185 L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (332)
|++|++++|+++.+++..+.... +|++|++++|.++.+|...+ ..+++|+.|++++|.++.+ |..+..+++
T Consensus 459 L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~ 537 (636)
T 4eco_A 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSST 537 (636)
T ss_dssp CSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCSS
T ss_pred CCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCc-ChhhhcCCC
Confidence 88888888888877665554443 89999999999998887754 4899999999999999996 556788999
Q ss_pred CcEEeC------CCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccc
Q psy8550 257 LRILYL------DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHS 322 (332)
Q Consensus 257 L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 322 (332)
|+.|++ ++|.+.+..+..++.+++|+.|++++|+++.++. .+. ++|+.||+++|++..++...
T Consensus 538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~-~~~--~~L~~L~Ls~N~l~~~~~~~ 606 (636)
T 4eco_A 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE-KIT--PNISVLDIKDNPNISIDLSY 606 (636)
T ss_dssp CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCS-CCC--TTCCEEECCSCTTCEEECTT
T ss_pred CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCH-hHh--CcCCEEECcCCCCccccHHh
Confidence 999999 4577777777789999999999999999966655 444 79999999999998877433
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=7.8e-27 Score=228.60 Aligned_cols=227 Identities=26% Similarity=0.299 Sum_probs=191.0
Q ss_pred cCCCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCC
Q psy8550 102 QASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFE 180 (332)
Q Consensus 102 ~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~ 180 (332)
.....+...|.|......++|.+.+++++|.++|+++++|+|++|.|+.+++ +|.++++|++|++++|+|+.+++.+|.
T Consensus 18 ~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~ 97 (635)
T 4g8a_A 18 SSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 97 (635)
T ss_dssp -------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc
Confidence 3344466678887777789999999999999999999999999999999987 899999999999999999999999999
Q ss_pred CCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccC-hhhcCCCCCCcE
Q psy8550 181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID-QACFEGLTALRI 259 (332)
Q Consensus 181 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 259 (332)
++++|++|+|++|+++++++.+|.++++|++|++++|.++.+++..|+++++|++|++++|.++.+. +..++.+++|++
T Consensus 98 ~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 177 (635)
T 4g8a_A 98 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 177 (635)
T ss_dssp TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhh
Confidence 9999999999999999999999999999999999999999999988999999999999999998753 567888999999
Q ss_pred EeCCCCCCCCcCcccccCCCC----ccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCC-CcccccccCCCCc
Q psy8550 260 LYLDDNQLRSVPTPSFIYLGM----LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT-NMMGHSMALGDYL 329 (332)
Q Consensus 260 L~L~~n~l~~~~~~~~~~l~~----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~l~~L 329 (332)
|++++|.++++++..+..+.+ ...++++.|.++.+.+..+.. ..+..+++++|... .+.+..+..+..+
T Consensus 178 L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l 251 (635)
T 4g8a_A 178 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGL 251 (635)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTC
T ss_pred hcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCccc
Confidence 999999999998877765544 347899999999988865554 45678888887544 3333444444433
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=2.6e-26 Score=212.92 Aligned_cols=251 Identities=19% Similarity=0.228 Sum_probs=173.7
Q ss_pred cCCchhhHhhhhccchh-hhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecC
Q psy8550 46 FKSPTEILKSLLIIPFE-VRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKE 124 (332)
Q Consensus 46 ~~~~~~~~~~l~~iP~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~ 124 (332)
++.+......+..+|.. ++.+++|+.|+++++.+....+ ........++.++..+
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~------------------------~~~~~l~~L~~L~L~~ 102 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT------------------------YAFAYAHTIQKLYMGF 102 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT------------------------TTTTTCTTCCEEECCS
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh------------------------hhccCCCCcCEEECCC
Confidence 34444454556778877 6888899998888887765532 1123334556777777
Q ss_pred CCccccCCCC-C--CCccEEEeecCCCccchhh-hcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCc
Q psy8550 125 ANLDVIPITL-N--PSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNN 200 (332)
Q Consensus 125 ~~l~~lp~~~-~--~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 200 (332)
+.+..+|... . +++++|++++|.++.+|.. +.++++|++|++++|.+..+++..|..+++|++|++++|.++++..
T Consensus 103 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 182 (390)
T 3o6n_A 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 182 (390)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG
T ss_pred CCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc
Confidence 7777776542 2 6788888888888877774 5778888888888888888777778888888888888887776643
Q ss_pred cccCCC-------------------------------------CCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCC
Q psy8550 201 KTFIGL-------------------------------------KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243 (332)
Q Consensus 201 ~~~~~l-------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (332)
..+.++ ++|+.|++++|.++..+ .+..+++|++|++++|.+
T Consensus 183 ~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCC
T ss_pred ccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcC
Confidence 333222 24555555555555442 246677788888888877
Q ss_pred cccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550 244 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM 323 (332)
Q Consensus 244 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 323 (332)
+.+.+..+..+++|+.|++++|.+++++. .+..+++|+.|++++|+++++++ .+..+++|+.|++++|+++.++...+
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~ 338 (390)
T 3o6n_A 261 EKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLKLSTH 338 (390)
T ss_dssp CEEESGGGTTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCCCCCCCTT
T ss_pred CCcChhHccccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCc-cccccCcCCEEECCCCccceeCchhh
Confidence 77767777777888888888888877655 44567788888888888876655 46667788888888888877764433
Q ss_pred c
Q psy8550 324 A 324 (332)
Q Consensus 324 ~ 324 (332)
.
T Consensus 339 ~ 339 (390)
T 3o6n_A 339 H 339 (390)
T ss_dssp C
T ss_pred c
Confidence 3
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.4e-26 Score=208.40 Aligned_cols=209 Identities=20% Similarity=0.164 Sum_probs=181.3
Q ss_pred ccCCCceEEecCCCccccCCCCC--CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCC---------C
Q psy8550 113 CNDETLVVTCKEANLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFE---------P 181 (332)
Q Consensus 113 c~~~~~~~~c~~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~---------~ 181 (332)
....++.++..++.+..+|..+. ++|++|++++|.++.+|..++++++|++|++++|.+.+..+..+. +
T Consensus 102 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 34456678888888888887665 899999999999999999999999999999999876665555554 4
Q ss_pred CCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEe
Q psy8550 182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILY 261 (332)
Q Consensus 182 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (332)
+++|++|++++|.++.+ |..++++++|++|++++|.++.+|+. ++.+++|+.|++++|.+.+..|..++.+++|+.|+
T Consensus 182 l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 99999999999999966 67799999999999999999999886 68899999999999999888888899999999999
Q ss_pred CCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550 262 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM 323 (332)
Q Consensus 262 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 323 (332)
+++|.+.+..+..++.+++|+.|++++|++.+..|..++++++++.+++..+.+..+.....
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~~~~ 321 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC------
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhhhhc
Confidence 99999888777789999999999999999999999999999999999999888777665443
No 40
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=8.2e-26 Score=197.13 Aligned_cols=181 Identities=29% Similarity=0.444 Sum_probs=171.3
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 215 (332)
.+.++++++++.++.+|..+. +++++|++++|.+..+.+..|..+++|++|++++|.++++.+..|.++++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356789999999999998655 689999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295 (332)
Q Consensus 216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 295 (332)
+|.++.+++..|..+++|++|++++|.++.+++..+..+++|++|++++|+++++++..|+.+++|+.|++++|++++++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 99999999988999999999999999999998888899999999999999999999988999999999999999999999
Q ss_pred chhcCCCCCCCEEEccCCCCCCc
Q psy8550 296 DGAFNGLGRLSALDLRGAGLTNM 318 (332)
Q Consensus 296 ~~~~~~l~~L~~L~Ls~n~l~~l 318 (332)
+..+..+++|+.|++++|.+++.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 98999999999999999999875
No 41
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.2e-26 Score=223.25 Aligned_cols=203 Identities=28% Similarity=0.381 Sum_probs=188.8
Q ss_pred CCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEE
Q psy8550 110 DCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVEL 188 (332)
Q Consensus 110 ~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 188 (332)
.|.|......++|.+..++.+|..++++++.|++++|.++.+++ ++.++++|++|++++|.++.+++..|+.+++|++|
T Consensus 2 ~c~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 81 (570)
T 2z63_A 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (570)
T ss_dssp CSEEEETTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CccccCCCcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEE
Confidence 57787777789999999999999999999999999999998876 89999999999999999999998999999999999
Q ss_pred EcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccC-hhhcCCCCCCcEEeCCCCCC
Q psy8550 189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID-QACFEGLTALRILYLDDNQL 267 (332)
Q Consensus 189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l 267 (332)
++++|.++.++|.+|.++++|++|++++|.++.+++..++.+++|++|++++|.++.+. |..++++++|++|++++|.+
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred eCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 99999999999999999999999999999999999877899999999999999999753 77799999999999999999
Q ss_pred CCcCcccccCCCCc----cEEEcCCCcCCccCchhcCCCCCCCEEEccCC
Q psy8550 268 RSVPTPSFIYLGML----AELRVGLNVFTTLADGAFNGLGRLSALDLRGA 313 (332)
Q Consensus 268 ~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 313 (332)
+++++..++.+.+| ..+++++|.++++++..+... +|+.|++++|
T Consensus 162 ~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred ceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence 99988888888888 899999999999999888776 7999999987
No 42
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.6e-26 Score=232.80 Aligned_cols=272 Identities=15% Similarity=0.190 Sum_probs=162.6
Q ss_pred CCchhhHhh-hhccchhhhhhhhhhhhhcCccc-cch-hhhhHHHHHH-------HHHHHHHHhhcCCCCCCC--CCccc
Q psy8550 47 KSPTEILKS-LLIIPFEVRILNKLRIFINDSVL-FSS-VSDITMWSLL-------VTTALLLLVHQASAFCPP--DCDCN 114 (332)
Q Consensus 47 ~~~~~~~~~-l~~iP~~~~~l~~L~~l~~~~~~-~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~p~--~c~c~ 114 (332)
..+.+.... ...+|..+++|.+|+.|++++|. +++ ..+..+..+. .+. .+....+.....|. .....
T Consensus 494 ~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~-~L~Ls~N~L~~ip~~~~l~~L 572 (876)
T 4ecn_A 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ-IFYMGYNNLEEFPASASLQKM 572 (876)
T ss_dssp CEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC-EEECCSSCCCBCCCHHHHTTC
T ss_pred CEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc-EEEeeCCcCCccCChhhhhcC
Confidence 344444333 37889999999999999999997 877 4444433222 111 11111222224454 33344
Q ss_pred CCCceEEecCCCccccCCCCC--CCccEEEeecCCCccchhhhcCCCC-CcEEEeecCcCcccCCCCCCCCCC--CcEEE
Q psy8550 115 DETLVVTCKEANLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSS-LQHVDLSHNQLVNIPIRGFEPQEK--LVELQ 189 (332)
Q Consensus 115 ~~~~~~~c~~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~-L~~L~l~~~~l~~~~~~~~~~l~~--L~~L~ 189 (332)
..+..+++.++.+..+| .+. ++|+.|++++|.++.+|..+..+++ |++|++++|.+..++ ..+..++. |+.|+
T Consensus 573 ~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 573 VKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVMGSVD 650 (876)
T ss_dssp TTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCEEEEE
T ss_pred CCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc-hhhhccccCCCCEEE
Confidence 45667777777777777 444 6778888888887777777777777 888888887777655 34443322 44444
Q ss_pred cCCCcc-----------------------------cccCccccCCCCCCCEEEccCCCCCCCCccccCCC-------CCC
Q psy8550 190 LNHNKL-----------------------------SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPL-------SHL 233 (332)
Q Consensus 190 l~~n~l-----------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------~~L 233 (332)
+++|.+ +.+++..+..+++|+.|+|++|.++.+|...+... ++|
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGC
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCc
Confidence 444444 44433333345566666666666665555543322 256
Q ss_pred cEeeccCCCCcccChhhcC--CCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCC------CcCCccCchhcCCCCCC
Q psy8550 234 EELDLGQNRISRIDQACFE--GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL------NVFTTLADGAFNGLGRL 305 (332)
Q Consensus 234 ~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L 305 (332)
+.|++++|.++.++. .+. .+++|+.|++++|.++++|. .++.+++|+.|++++ |.+.+..|..+.++++|
T Consensus 731 ~~L~Ls~N~L~~lp~-~l~~~~l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 731 TTIDLRFNKLTSLSD-DFRATTLPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp CEEECCSSCCCCCCG-GGSTTTCTTCCEEECCSSCCSSCCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred cEEECCCCCCccchH-HhhhccCCCcCEEEeCCCCCCccch-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence 666666666665533 333 56666666666666666543 455666666666654 55566666666666666
Q ss_pred CEEEccCCCCCCcccccc
Q psy8550 306 SALDLRGAGLTNMMGHSM 323 (332)
Q Consensus 306 ~~L~Ls~n~l~~l~~~~~ 323 (332)
+.|+|++|++..+|...+
T Consensus 809 ~~L~Ls~N~L~~Ip~~l~ 826 (876)
T 4ecn_A 809 IQLQIGSNDIRKVDEKLT 826 (876)
T ss_dssp CEEECCSSCCCBCCSCCC
T ss_pred CEEECCCCCCCccCHhhc
Confidence 677777666666655543
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=8.1e-26 Score=223.95 Aligned_cols=215 Identities=24% Similarity=0.333 Sum_probs=184.9
Q ss_pred CCceEEecCCCccccCC-CCC--CCccEEEeecCCCc-cchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEc
Q psy8550 116 ETLVVTCKEANLDVIPI-TLN--PSIQRLVLKYNRIK-TVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQL 190 (332)
Q Consensus 116 ~~~~~~c~~~~l~~lp~-~~~--~~L~~L~l~~~~l~-~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 190 (332)
....++..++.+..++. .+. ++++.|++++|.+. .+|. .+.++++|++|++++|.+..+.+..|..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 45678888888887654 332 78999999999987 5664 8889999999999999999988889999999999999
Q ss_pred CCCccc--ccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccCh--------hhcCCCCCCcEE
Q psy8550 191 NHNKLS--SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ--------ACFEGLTALRIL 260 (332)
Q Consensus 191 ~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L 260 (332)
++|.+. +..|..|.++++|++|++++|.++.+++..|..+++|+.|++++|.++.+.+ ..+.++++|+.|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 999886 4467889999999999999999999999888999999999999999987633 236788999999
Q ss_pred eCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccccc-CCCCcc
Q psy8550 261 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA-LGDYLH 330 (332)
Q Consensus 261 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~-~l~~L~ 330 (332)
++++|.++.+++..|+.+++|+.|++++|+++++++..|.++++|+.|++++|+++++++..|. .++.|+
T Consensus 542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 612 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS
T ss_pred ECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC
Confidence 9999999999988899999999999999999999998899999999999999999999998776 455554
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=3.4e-26 Score=223.71 Aligned_cols=214 Identities=24% Similarity=0.215 Sum_probs=179.2
Q ss_pred CCceEEecCC-CccccCCCCCCCccEEEeecCCCccc---hhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcC
Q psy8550 116 ETLVVTCKEA-NLDVIPITLNPSIQRLVLKYNRIKTV---DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191 (332)
Q Consensus 116 ~~~~~~c~~~-~l~~lp~~~~~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 191 (332)
.+..++..++ .+..++..-.+++++|++++|.++.+ +..+..+++|++|++++|.+..++ ..+..+++|++|+++
T Consensus 329 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQ 407 (606)
T ss_dssp SCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECT
T ss_pred ccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECC
Confidence 3445666555 33344433447889999999988865 668889999999999999988887 788889999999999
Q ss_pred CCcccccCc-cccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcc-cChhhcCCCCCCcEEeCCCCCCCC
Q psy8550 192 HNKLSSVNN-KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR-IDQACFEGLTALRILYLDDNQLRS 269 (332)
Q Consensus 192 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~ 269 (332)
+|.+.+..+ ..+.++++|++|++++|.++...+..++.+++|++|++++|.+++ +.+..++.+++|+.|++++|.+++
T Consensus 408 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487 (606)
T ss_dssp TSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred CCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc
Confidence 999998877 678899999999999999998877778889999999999999886 457778889999999999999999
Q ss_pred cCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCC-Cccc
Q psy8550 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGD-YLHW 331 (332)
Q Consensus 270 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~-~L~~ 331 (332)
+++..++.+++|+.|++++|++++.+|..+.++++|++||+++|+++++|+. +..++ .|+.
T Consensus 488 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~ 549 (606)
T 3vq2_A 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAF 549 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCE
T ss_pred cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcE
Confidence 8888889999999999999999999888899999999999999999988876 66554 3553
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=6.1e-25 Score=213.18 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=75.1
Q ss_pred CCCCCCCCCC---ccCCchhhHhhhhccc-hhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy8550 35 HPGFQNNPKS---NFKSPTEILKSLLIIP-FEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPD 110 (332)
Q Consensus 35 ~~g~~~~p~~---~~~~~~~~~~~l~~iP-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 110 (332)
..+++.+|.. .++.+++....+..+| ..++.+.+|+.|++++|.++...+ ..
T Consensus 40 ~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------------------~~ 95 (562)
T 3a79_B 40 NRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF------------------------HV 95 (562)
T ss_dssp TSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT------------------------TT
T ss_pred CCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH------------------------HH
Confidence 3455566643 3456666666677776 579999999999999998877632 12
Q ss_pred CcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccch--hhhcCCCCCcEEEeecCcCc
Q psy8550 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD--SAIQFYSSLQHVDLSHNQLV 172 (332)
Q Consensus 111 c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~--~~~~~l~~L~~L~l~~~~l~ 172 (332)
......++.++.+++.++.+|..-.++|++|++++|.++.++ ..++++++|++|++++|.+.
T Consensus 96 ~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp TTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred hCCCCCCCEEECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 223344556777777777777664467777777777776543 46666777766666666554
No 46
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.93 E-value=5.7e-26 Score=208.64 Aligned_cols=190 Identities=27% Similarity=0.407 Sum_probs=171.4
Q ss_pred hcCCCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhc-CCCCCcEEEeecCcCcccCCCC
Q psy8550 101 HQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQ-FYSSLQHVDLSHNQLVNIPIRG 178 (332)
Q Consensus 101 ~~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~-~l~~L~~L~l~~~~l~~~~~~~ 178 (332)
......||..|.|... .++|.++.++.+|..++..++.|++++|.++.++. .+. .+++|++|++++|+++.+++..
T Consensus 6 ~~~~~~Cp~~C~C~~~--~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~ 83 (361)
T 2xot_A 6 GRSVVSCPANCLCASN--ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA 83 (361)
T ss_dssp -CCCTTCCTTCEEETT--EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT
T ss_pred CCcCCCCCCCCEECCC--EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh
Confidence 3556779999999754 79999999999999999999999999999998887 455 8999999999999999999889
Q ss_pred CCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhc---CCCC
Q psy8550 179 FEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF---EGLT 255 (332)
Q Consensus 179 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~ 255 (332)
|..+++|++|++++|+++.+++..|.++++|++|+|++|.++.+++..|..+++|+.|++++|.++.+++..+ ..++
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~ 163 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CT
T ss_pred ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCC
Confidence 9999999999999999999988899999999999999999999988889999999999999999999988776 5689
Q ss_pred CCcEEeCCCCCCCCcCcccccCCCC--ccEEEcCCCcCC
Q psy8550 256 ALRILYLDDNQLRSVPTPSFIYLGM--LAELRVGLNVFT 292 (332)
Q Consensus 256 ~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~ 292 (332)
+|+.|++++|.++.++...+..++. ++.|++++|++.
T Consensus 164 ~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 9999999999999999878888876 488999999886
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1e-25 Score=220.25 Aligned_cols=252 Identities=19% Similarity=0.218 Sum_probs=179.5
Q ss_pred CCchhhHhhhhccchh-hhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCC
Q psy8550 47 KSPTEILKSLLIIPFE-VRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEA 125 (332)
Q Consensus 47 ~~~~~~~~~l~~iP~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~ 125 (332)
..+......+..+|+. ++.+.+|+.|++++|.+....+ ........+..++..++
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~~~l~~L~~L~L~~n 109 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT------------------------YAFAYAHTIQKLYMGFN 109 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT------------------------TTTTTCTTCCEEECCSS
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh------------------------HHhcCCCCCCEEECCCC
Confidence 3333444455777776 6888999999998887776532 12233345667888888
Q ss_pred CccccCCCC---CCCccEEEeecCCCccchhh-hcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCcc
Q psy8550 126 NLDVIPITL---NPSIQRLVLKYNRIKTVDSA-IQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNK 201 (332)
Q Consensus 126 ~l~~lp~~~---~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 201 (332)
.+..+|... .++|++|++++|.++.+|+. ++++++|++|++++|.+..+++..|+.+++|++|++++|.+++++..
T Consensus 110 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 189 (597)
T 3oja_B 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 189 (597)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG
T ss_pred cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh
Confidence 888777543 27888888888888888774 57888888888888888888878888888888888888888776544
Q ss_pred ccCCC-------------------------------------CCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCc
Q psy8550 202 TFIGL-------------------------------------KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244 (332)
Q Consensus 202 ~~~~l-------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (332)
.+.++ ++|+.|++++|.++.. ..+..+++|+.|++++|.++
T Consensus 190 ~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 190 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred hhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccC
Confidence 33322 2344455555555443 22566778888888888888
Q ss_pred ccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccccc
Q psy8550 245 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA 324 (332)
Q Consensus 245 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~ 324 (332)
++.+..++.+++|+.|++++|.+++++. .++.+++|+.|++++|.++++++ .+..+++|+.|++++|++++++...+.
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~ 345 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLKLSTHH 345 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCCCCCCCTTC
T ss_pred CCCHHHhcCccCCCEEECCCCCCCCCCc-ccccCCCCcEEECCCCCCCccCc-ccccCCCCCEEECCCCCCCCcChhhcC
Confidence 7777778888888888888888887755 45667788888888888886654 567778888888888888877644444
Q ss_pred CC
Q psy8550 325 LG 326 (332)
Q Consensus 325 ~l 326 (332)
.+
T Consensus 346 ~L 347 (597)
T 3oja_B 346 TL 347 (597)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 48
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=4.1e-25 Score=201.41 Aligned_cols=269 Identities=20% Similarity=0.205 Sum_probs=190.8
Q ss_pred ccCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecC
Q psy8550 45 NFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKE 124 (332)
Q Consensus 45 ~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~ 124 (332)
.++.+......+..+|. ++.+.+|+.|++++|.+........ +.. +..+..........+. ......+..+++.+
T Consensus 67 ~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~--l~~-L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQN--LTN-LRELYLNEDNISDISP-LANLTKMYSLNLGA 141 (347)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTT--CTT-CSEEECTTSCCCCCGG-GTTCTTCCEEECTT
T ss_pred CccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcC--CCc-CCEEECcCCcccCchh-hccCCceeEEECCC
Confidence 34555555566677777 8888888888888887766531100 000 0000000011111111 11223344555555
Q ss_pred CCccccCCCCC--CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccc
Q psy8550 125 ANLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKT 202 (332)
Q Consensus 125 ~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 202 (332)
+.....+..+. +++++|++++|.+..++. +..+++|++|++++|.+..+++ +..+++|+.|++++|.+.+..+
T Consensus 142 n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-- 216 (347)
T 4fmz_A 142 NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-- 216 (347)
T ss_dssp CTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred CCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--
Confidence 53222121122 677777777777776665 6777888888888887777654 6777888888888888877755
Q ss_pred cCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCcc
Q psy8550 203 FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282 (332)
Q Consensus 203 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 282 (332)
+..+++|++|++++|.++.+++ +..+++|++|++++|.++.+ ..+..+++|+.|++++|.+++++ .+..+++|+
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~ 290 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS--VLNNLSQLN 290 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCS
T ss_pred hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh--hhcCCCCCC
Confidence 7788899999999999988877 68889999999999998887 34788899999999999999874 578899999
Q ss_pred EEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 283 ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 283 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
.|++++|++++..+..++++++|+.|++++|+++++++ ++.++.|+.
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 99999999999998889999999999999999999887 666777654
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=8e-26 Score=218.44 Aligned_cols=200 Identities=28% Similarity=0.359 Sum_probs=183.0
Q ss_pred EEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCccccc
Q psy8550 120 VTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSV 198 (332)
Q Consensus 120 ~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 198 (332)
++|+++.++.+|.++++++++|++++|.++.+++ .+.++++|++|++++|.+..+++.+|+.+++|++|++++|.++++
T Consensus 10 c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 4778899999999999999999999999998754 899999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCEEEccCCCCCCCC-ccccCCCCCCcEeeccCCC-CcccChhhcCCCCCCcEEeCCCCCCCCcCccccc
Q psy8550 199 NNKTFIGLKSLKVLNLRGNFLEDLP-DRLFAPLSHLEELDLGQNR-ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFI 276 (332)
Q Consensus 199 ~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 276 (332)
++..|+++++|++|++++|.++.++ +..++.+++|++|++++|. +..+++..+.++++|++|++++|.+++..+..++
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 8888999999999999999999753 3457999999999999998 6778777899999999999999999998888999
Q ss_pred CCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcc
Q psy8550 277 YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMM 319 (332)
Q Consensus 277 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~ 319 (332)
.+++|+.|++++|.+...++..+..+++|++|++++|++++++
T Consensus 170 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (549)
T 2z81_A 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212 (549)
T ss_dssp TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCC
T ss_pred ccccCceEecccCcccccchhhHhhcccccEEEccCCcccccc
Confidence 9999999999999998877766678999999999999998863
No 50
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=3.7e-25 Score=197.14 Aligned_cols=189 Identities=25% Similarity=0.335 Sum_probs=173.4
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 215 (332)
+++++++++++.++.+|..+. +++++|++++|.+..+.+..|..+++|++|++++|.++++++. ..+++|++|+++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS 85 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence 578999999999999997654 7899999999999999888999999999999999999998653 789999999999
Q ss_pred CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295 (332)
Q Consensus 216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 295 (332)
+|.++.+|.. +..+++|++|++++|+++.+++..|..+++|++|++++|+++++++..|..+++|+.|++++|++++++
T Consensus 86 ~N~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 86 HNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp SSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CCcCCcCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 9999999875 588999999999999999998888999999999999999999999988999999999999999999999
Q ss_pred chhcCCCCCCCEEEccCCCCCCcccccccCCCCcc
Q psy8550 296 DGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLH 330 (332)
Q Consensus 296 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~ 330 (332)
+..|.++++|+.|++++|+++.+|+..+.. ..|+
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~-~~L~ 198 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLP 198 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CCCS
T ss_pred HHHhcCcCCCCEEECCCCcCCccChhhccc-ccCC
Confidence 988999999999999999999998876654 3443
No 51
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=5.2e-25 Score=204.08 Aligned_cols=194 Identities=20% Similarity=0.282 Sum_probs=102.4
Q ss_pred CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEc
Q psy8550 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL 214 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 214 (332)
.+++.|+++++.++.+|+ .+..+++|++|++++|.+..+++..|..+++|++|++++|.+++++|..|+++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 445555555555555544 2444555555555555555555445555555555555555555554444555555555555
Q ss_pred cCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCc----------------------
Q psy8550 215 RGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT---------------------- 272 (332)
Q Consensus 215 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------- 272 (332)
++|.++.+|+..|+.+++|++|++++|.++.+.+..+..+++|++|++++|.+++++.
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~ 204 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence 5555555555444455555555555555555544444555555555555554443321
Q ss_pred -------------------------------------ccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCC
Q psy8550 273 -------------------------------------PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315 (332)
Q Consensus 273 -------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 315 (332)
..++.+++|+.|++++|.+++..+..+.++++|+.|++++|++
T Consensus 205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284 (390)
T ss_dssp SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred CcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence 1244455666666666666666566666666666666666666
Q ss_pred CCcccccccCCCCcc
Q psy8550 316 TNMMGHSMALGDYLH 330 (332)
Q Consensus 316 ~~l~~~~~~~l~~L~ 330 (332)
++++. .+..++.|+
T Consensus 285 ~~~~~-~~~~l~~L~ 298 (390)
T 3o6n_A 285 VALNL-YGQPIPTLK 298 (390)
T ss_dssp CEEEC-SSSCCTTCC
T ss_pred cccCc-ccCCCCCCC
Confidence 66543 234444444
No 52
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=2.5e-25 Score=215.94 Aligned_cols=137 Identities=27% Similarity=0.359 Sum_probs=116.0
Q ss_pred CCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550 106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184 (332)
Q Consensus 106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~ 184 (332)
.++..|.|... ..++|.++.++.+|.++++++++|++++|.++.+++ .+.++++|++|++++|.++.+.+..|..+++
T Consensus 23 ~~~~~~~~~~~-~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 23 GSMTPFSNELE-SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp ----------C-CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred ccccccccCCC-cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 35555666654 689999999999999999999999999999998875 8999999999999999999999899999999
Q ss_pred CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCC-ccccCCCCCCcEeeccCCCCccc
Q psy8550 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP-DRLFAPLSHLEELDLGQNRISRI 246 (332)
Q Consensus 185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~ 246 (332)
|++|++++|.++.+++. .+++|++|++++|.++.++ +..|+.+++|++|++++|.++..
T Consensus 102 L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~ 161 (562)
T 3a79_B 102 LEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161 (562)
T ss_dssp CCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT
T ss_pred CCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC
Confidence 99999999999988554 7899999999999999876 45678999999999999987653
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=8.5e-25 Score=192.97 Aligned_cols=203 Identities=27% Similarity=0.344 Sum_probs=130.3
Q ss_pred CCceEEecCCCccccCC-CCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCc
Q psy8550 116 ETLVVTCKEANLDVIPI-TLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194 (332)
Q Consensus 116 ~~~~~~c~~~~l~~lp~-~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 194 (332)
....+.+.++.+..++. ...+++++|++++|.++.++ .+..+++|++|++++|.++.+++..|..+++|++|++++|+
T Consensus 42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence 34456666666655542 11266667777766666653 56666667777777776666666666666677777777776
Q ss_pred ccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCccc
Q psy8550 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPS 274 (332)
Q Consensus 195 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 274 (332)
++++++..|.++++|++|++++|.++.+++..++.+++|+.|++++|.++.+++..++.+++|++|++++|.++++++..
T Consensus 121 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (272)
T 3rfs_A 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH
Confidence 66666666666667777777777666666666666666777777777666666665666666777777777766666656
Q ss_pred ccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCC
Q psy8550 275 FIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALG 326 (332)
Q Consensus 275 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l 326 (332)
++.+++|+.|++++|++.+. +++++.|++.+|++++..|..++.+
T Consensus 201 ~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred HhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 66666677777776665533 3356666666666666555555443
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=5.8e-25 Score=194.29 Aligned_cols=203 Identities=26% Similarity=0.290 Sum_probs=182.1
Q ss_pred CCCceEEecCCCccccCC-CCC--CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEc
Q psy8550 115 DETLVVTCKEANLDVIPI-TLN--PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQL 190 (332)
Q Consensus 115 ~~~~~~~c~~~~l~~lp~-~~~--~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 190 (332)
...+.++..++.+..++. .+. +++++|++++|.++.+++ .+.++++|++|++++|.+..+++..|..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 346689999999998886 333 799999999999998877 7899999999999999999999899999999999999
Q ss_pred CCCcccccCccccCCCCCCCEEEccCCCCCCCC-ccccCCCCCCcEeeccCCCCcccChhhcCCCCCCc----EEeCCCC
Q psy8550 191 NHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP-DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALR----ILYLDDN 265 (332)
Q Consensus 191 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~n 265 (332)
++|.+.++.+..+.++++|++|++++|.++.+. +..++.+++|++|++++|.++.+++..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 999999998888999999999999999999854 55678999999999999999999887777666666 8999999
Q ss_pred CCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCc
Q psy8550 266 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318 (332)
Q Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l 318 (332)
.++++++..+.. .+|+.|++++|.++++++..+.++++|+.|++++|.+++-
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 999998866654 4899999999999999998899999999999999999864
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=8e-26 Score=206.88 Aligned_cols=245 Identities=18% Similarity=0.205 Sum_probs=187.4
Q ss_pred hhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCccc
Q psy8550 50 TEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDV 129 (332)
Q Consensus 50 ~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~ 129 (332)
+.....++.+|..+. .+|+.|+++++.+....+ ........++.++..++.+..
T Consensus 37 ~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~------------------------~~~~~l~~L~~L~L~~n~l~~ 90 (353)
T 2z80_A 37 KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISN------------------------SDLQRCVNLQALVLTSNGINT 90 (353)
T ss_dssp ECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECT------------------------TTTTTCTTCCEEECTTSCCCE
T ss_pred eCCCCCccccccccc--ccCcEEECCCCcCcccCH------------------------HHhccCCCCCEEECCCCccCc
Confidence 334455677777665 377777777777665432 111223445677888887777
Q ss_pred cCCC-CC--CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCC-CCCCCCCCCcEEEcCCC-cccccCcccc
Q psy8550 130 IPIT-LN--PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPI-RGFEPQEKLVELQLNHN-KLSSVNNKTF 203 (332)
Q Consensus 130 lp~~-~~--~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 203 (332)
++.. +. +++++|++++|.++.++. .+.++++|++|++++|.+..++. ..|..+++|++|++++| .+..+.+..|
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 170 (353)
T 2z80_A 91 IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170 (353)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence 6543 33 678888888888888777 47888888888888888888776 57888888888888887 5777777788
Q ss_pred CCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCc-----------
Q psy8550 204 IGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT----------- 272 (332)
Q Consensus 204 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------- 272 (332)
.++++|++|++++|.++.+++..++.+++|++|++++|.+..++...+..+++|+.|++++|.+++++.
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccch
Confidence 888888888888888888777777888888888888888877766555567888888888888876542
Q ss_pred --------------------ccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccc
Q psy8550 273 --------------------PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMG 320 (332)
Q Consensus 273 --------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~ 320 (332)
..++.+++|+.|++++|+++++++..|+++++|++|++++|.+.+..+
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 245678999999999999999888778999999999999999987654
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=6.5e-25 Score=210.84 Aligned_cols=126 Identities=16% Similarity=0.163 Sum_probs=72.8
Q ss_pred CCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccC--hhhcCCCCCCcEEeCCCCCCCC-cCcccccCC---
Q psy8550 205 GLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID--QACFEGLTALRILYLDDNQLRS-VPTPSFIYL--- 278 (332)
Q Consensus 205 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l--- 278 (332)
.+++|++|++++|.+++..+..++.+++|+.|++++|.+++++ +..+..+++|++|++++|.+++ ++...+..+
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 4455555555555555533333455555555555555555432 2335555555555555555554 443333333
Q ss_pred -------------------CCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 279 -------------------GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 279 -------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
++|+.|++++|+++.+++ .+..+++|+.|++++|+++++++..|..++.|+.
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPK-QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCCcccccch-hhhcCCCCCEEECCCCcCCccCHHHhccCCcccE
Confidence 456666666666665444 3447778888888888888877777777777664
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.8e-25 Score=199.98 Aligned_cols=248 Identities=16% Similarity=0.147 Sum_probs=191.9
Q ss_pred cCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhh-hhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecC
Q psy8550 46 FKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVS-DITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKE 124 (332)
Q Consensus 46 ~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~ 124 (332)
+..+.+....+ .+|..+... |+.|+++++.+.... +...... ... . .....++.++..+
T Consensus 45 L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~-~~~-~---------------~~l~~L~~L~L~~ 104 (312)
T 1wwl_A 45 LEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFG-ALR-V---------------LGISGLQELTLEN 104 (312)
T ss_dssp CTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHH-HHH-H---------------HTTSCCCEEEEEE
T ss_pred ceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHH-HHH-h---------------cCcCCccEEEccC
Confidence 34444555555 778887766 888899988885432 2111100 000 0 1123566788888
Q ss_pred CCcc-ccCCCC----CCCccEEEeecCCCccchhhhcCC-----CCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCc
Q psy8550 125 ANLD-VIPITL----NPSIQRLVLKYNRIKTVDSAIQFY-----SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194 (332)
Q Consensus 125 ~~l~-~lp~~~----~~~L~~L~l~~~~l~~l~~~~~~l-----~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 194 (332)
+.+. .+|..+ .+++++|++++|.++.+|..++.+ ++|++|++++|++..+++..|+.+++|++|++++|+
T Consensus 105 n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred CcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 8887 677754 389999999999999887777776 899999999999999998999999999999999999
Q ss_pred cccc--Cccc--cCCCCCCCEEEccCCCCCCCC---ccccCCCCCCcEeeccCCCCcccCh-hhcCCCCCCcEEeCCCCC
Q psy8550 195 LSSV--NNKT--FIGLKSLKVLNLRGNFLEDLP---DRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQ 266 (332)
Q Consensus 195 l~~~--~~~~--~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 266 (332)
+.+. .+.. +.++++|++|++++|.++.++ ...+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 7653 1223 388999999999999998543 4455678999999999999998764 456678999999999999
Q ss_pred CCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCc
Q psy8550 267 LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318 (332)
Q Consensus 267 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l 318 (332)
++.+|. .+. ++|+.|++++|++++.+. +..+++|++|++++|++++.
T Consensus 265 l~~ip~-~~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 265 LKQVPK-GLP--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CSSCCS-SCC--SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred cChhhh-hcc--CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence 998876 343 799999999999999843 88999999999999999864
No 58
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=9.6e-26 Score=227.22 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=134.2
Q ss_pred CCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCC-------CCCCEEEccCCCCCCCCcccc-CCC
Q psy8550 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGL-------KSLKVLNLRGNFLEDLPDRLF-APL 230 (332)
Q Consensus 159 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~~-~~l 230 (332)
.+|++|++++|.+..++...+..+++|+.|++++|+++.+++..+... ++|+.|+|++|.++.+|...+ ..+
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l 752 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccC
Confidence 367777777777776665555678999999999999998866555543 399999999999999987753 389
Q ss_pred CCCcEeeccCCCCcccChhhcCCCCCCcEEeCCC------CCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCC
Q psy8550 231 SHLEELDLGQNRISRIDQACFEGLTALRILYLDD------NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR 304 (332)
Q Consensus 231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 304 (332)
++|+.|++++|.++.+ |..+..+++|+.|++++ |.+.+..+..++.+++|+.|++++|++..++. .+. ++
T Consensus 753 ~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~-~l~--~~ 828 (876)
T 4ecn_A 753 PYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE-KLT--PQ 828 (876)
T ss_dssp TTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCS-CCC--SS
T ss_pred CCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCH-hhc--CC
Confidence 9999999999999997 55678899999999976 77777777789999999999999999965555 444 69
Q ss_pred CCEEEccCCCCCCccccccc
Q psy8550 305 LSALDLRGAGLTNMMGHSMA 324 (332)
Q Consensus 305 L~~L~Ls~n~l~~l~~~~~~ 324 (332)
|+.|||++|++..+.+..|.
T Consensus 829 L~~LdLs~N~l~~i~~~~~~ 848 (876)
T 4ecn_A 829 LYILDIADNPNISIDVTSVC 848 (876)
T ss_dssp SCEEECCSCTTCEEECGGGH
T ss_pred CCEEECCCCCCCccChHHcc
Confidence 99999999999998876654
No 59
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=7.1e-25 Score=193.47 Aligned_cols=182 Identities=32% Similarity=0.444 Sum_probs=170.2
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 215 (332)
++++.|+++++.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.++++++..|.++++|++|+++
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 68999999999999876 4888999999999999999864 78899999999999999999988889999999999999
Q ss_pred CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295 (332)
Q Consensus 216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 295 (332)
+|.++.+++..++.+++|++|++++|.++.+++..++.+++|+.|++++|.++++++..++.+++|+.|++++|++++++
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 99999999988899999999999999999998888899999999999999999999988899999999999999999999
Q ss_pred chhcCCCCCCCEEEccCCCCCCccc
Q psy8550 296 DGAFNGLGRLSALDLRGAGLTNMMG 320 (332)
Q Consensus 296 ~~~~~~l~~L~~L~Ls~n~l~~l~~ 320 (332)
+..+.++++|+.|++++|.+.+..+
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HHHHhCCcCCCEEEccCCCccccCc
Confidence 9889999999999999999876543
No 60
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.93 E-value=1.1e-24 Score=186.32 Aligned_cols=163 Identities=31% Similarity=0.519 Sum_probs=131.1
Q ss_pred CCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCC
Q psy8550 104 SAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQ 182 (332)
Q Consensus 104 ~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 182 (332)
...||..|.|... .++|.++.++.+|..++++++.|++++|.++.+++ .+..+++|++|++++|.++.+.+..|.++
T Consensus 2 ~~~CP~~C~C~~~--~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l 79 (220)
T 2v9t_B 2 SLHCPAACTCSNN--IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79 (220)
T ss_dssp CCCSCTTSEEETT--EEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCCCCCCEECCC--EEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC
Confidence 3579999999854 79999999999999888889999999888887776 67778888888888888888877778888
Q ss_pred CCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeC
Q psy8550 183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL 262 (332)
Q Consensus 183 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 262 (332)
++|++|++++|.++.+++..|.++++|++|+|++|.++.+++..|..+++|+.|++++|.++.+++..+..+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 88888888888888777777777778888888888777777777777777777777777777777666777777777777
Q ss_pred CCCCCC
Q psy8550 263 DDNQLR 268 (332)
Q Consensus 263 ~~n~l~ 268 (332)
++|.+.
T Consensus 160 ~~N~~~ 165 (220)
T 2v9t_B 160 AQNPFI 165 (220)
T ss_dssp CSSCEE
T ss_pred CCCCcC
Confidence 777664
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.2e-24 Score=213.11 Aligned_cols=105 Identities=25% Similarity=0.282 Sum_probs=85.4
Q ss_pred cCCCCCCcEeeccCCCC-cccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCC
Q psy8550 227 FAPLSHLEELDLGQNRI-SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305 (332)
Q Consensus 227 ~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 305 (332)
+..++.++.|++++|.+ ..+.+..+..+++|+.|++++|+++++++..|+.+++|+.|+|++|+++++++.+|.++++|
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 34445566666666653 33456668888899999999999999988889999999999999999999999889999999
Q ss_pred CEEEccCCCCCCcccccccCC-CCccc
Q psy8550 306 SALDLRGAGLTNMMGHSMALG-DYLHW 331 (332)
Q Consensus 306 ~~L~Ls~n~l~~l~~~~~~~l-~~L~~ 331 (332)
++||+++|+++++++..|..+ ..|+.
T Consensus 545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp CEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred CEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence 999999999999999888876 45654
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.3e-24 Score=210.64 Aligned_cols=193 Identities=24% Similarity=0.313 Sum_probs=99.3
Q ss_pred CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEc
Q psy8550 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL 214 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 214 (332)
++|+.|++++|.++.+++ .++.+++|++|++++|.+..+++..|+.+++|++|++++|.++.+++..|+++++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 345555555555544433 4445555555555555555554444455555555555555555444444445555555555
Q ss_pred cCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCC-------------------------------------CCC
Q psy8550 215 RGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL-------------------------------------TAL 257 (332)
Q Consensus 215 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------------------------------------~~L 257 (332)
++|.++.+++..|+.+++|+.|++++|.++.++...+..+ ++|
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L 234 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 234 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence 5555555444444445555555555554444432222111 012
Q ss_pred cEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 258 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 258 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
+.|++++|.+++. ..++.+++|+.|++++|.+++.+|..|+++++|+.|+|++|++++++. .+..++.|+.
T Consensus 235 ~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~ 305 (597)
T 3oja_B 235 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKV 305 (597)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC-SSSCCTTCCE
T ss_pred CEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc-ccccCCCCcE
Confidence 2222223333222 235566677777777777777766677777777777777777777644 3344555543
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=220.37 Aligned_cols=156 Identities=28% Similarity=0.386 Sum_probs=111.4
Q ss_pred CcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccch-hhhcCCCCCcEEEeecC-cCcccCCCCCCCCCCCcEE
Q psy8550 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHN-QLVNIPIRGFEPQEKLVEL 188 (332)
Q Consensus 111 c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L 188 (332)
|.|.. ..++|.+..++.+|. +++++++|++++|.++.++ ..+.++++|++|++++| .+..+++.+|.++++|++|
T Consensus 2 C~~~~--~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 2 CSFDG--RIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp CBTTT--EEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred ceEec--eEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence 55543 479999999999998 8899999999999998764 37777888888888877 4455666777777777777
Q ss_pred EcCCCcccccCccccCCCCCCCEEEccCCCCCCC-C-ccccCCCCCCcEeeccCCCCcccCh-hhcCCCCCCcEEeCCCC
Q psy8550 189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL-P-DRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDN 265 (332)
Q Consensus 189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n 265 (332)
++++|.+.++.|.+|.++++|++|+|++|.+++. + ...++.+++|++|++++|.++.+.+ ..|+++++|++|++++|
T Consensus 79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 7777777777777777777777777777777652 2 2235666677777777776665533 34566666666666665
Q ss_pred CCCC
Q psy8550 266 QLRS 269 (332)
Q Consensus 266 ~l~~ 269 (332)
.+++
T Consensus 159 ~i~~ 162 (844)
T 3j0a_A 159 QIFL 162 (844)
T ss_dssp CCCC
T ss_pred cCCe
Confidence 5543
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=3.4e-25 Score=214.79 Aligned_cols=234 Identities=23% Similarity=0.231 Sum_probs=122.5
Q ss_pred hccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCccccCCCCCC
Q psy8550 57 LIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNP 136 (332)
Q Consensus 57 ~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~ 136 (332)
..+|..++.+.+|+.+.++++.+...+. ..... .+..+...++.+..+|....+
T Consensus 272 ~~~~~~~~~l~~L~~L~l~~~~l~~l~~-------------------------~~~~~-~L~~L~l~~n~~~~l~~~~l~ 325 (570)
T 2z63_A 272 DDIIDLFNCLTNVSSFSLVSVTIERVKD-------------------------FSYNF-GWQHLELVNCKFGQFPTLKLK 325 (570)
T ss_dssp SCSTTTTGGGTTCSEEEEESCEECSCCB-------------------------CCSCC-CCSEEEEESCBCSSCCBCBCS
T ss_pred hhchhhhcCcCcccEEEecCccchhhhh-------------------------hhccC-CccEEeeccCcccccCccccc
Confidence 3466778888888888887776664321 11111 344555555555555544334
Q ss_pred ----------------------CccEEEeecCCCccc---hhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcC
Q psy8550 137 ----------------------SIQRLVLKYNRIKTV---DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191 (332)
Q Consensus 137 ----------------------~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 191 (332)
++++|++++|.++.+ +..+..+++|++|++++|.+..+++. +..+++|++|+++
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~ 404 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ 404 (570)
T ss_dssp SCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECT
T ss_pred ccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEcc
Confidence 455555555554433 33445555555555555555544433 4555555555555
Q ss_pred CCcccccCc-cccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCc-ccChhhcCCCCCCcEEeCCCCCCCC
Q psy8550 192 HNKLSSVNN-KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS-RIDQACFEGLTALRILYLDDNQLRS 269 (332)
Q Consensus 192 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~ 269 (332)
+|.+.+..+ ..+.++++|++|++++|.+...++..+..+++|+.|++++|.++ ...|..+..+++|+.|++++|++++
T Consensus 405 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~ 484 (570)
T 2z63_A 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484 (570)
T ss_dssp TSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred CCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc
Confidence 555554433 34455555555555555555544444455555555555555554 1223445555555555555555555
Q ss_pred cCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCC
Q psy8550 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317 (332)
Q Consensus 270 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 317 (332)
+++..++.+++|+.|++++|+++++++..+.++++|+.|++++|.+++
T Consensus 485 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 544455555555555555555555555455555555555555555543
No 65
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.5e-24 Score=197.69 Aligned_cols=269 Identities=18% Similarity=0.198 Sum_probs=174.0
Q ss_pred CCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCC
Q psy8550 47 KSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEAN 126 (332)
Q Consensus 47 ~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~ 126 (332)
+.+......+..+|. ++.+.+|+.|++++|.+....+.. .+.. +..+..........| .......++.++..++.
T Consensus 47 ~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~--~l~~-L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 47 TKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLS--NLVK-LTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN 121 (347)
T ss_dssp SEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGT--TCTT-CCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC
T ss_pred cEEEEeCCccccchh-hhhcCCccEEEccCCccccchhhh--cCCc-CCEEEccCCcccCch-HHcCCCcCCEEECcCCc
Confidence 344444445566654 889999999999999887764311 0000 000000000111111 11112233445555555
Q ss_pred ccccCC-CCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCC
Q psy8550 127 LDVIPI-TLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIG 205 (332)
Q Consensus 127 l~~lp~-~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 205 (332)
+..+|. .-.++++.|++++|......+.+..+++|++|++++|.+..+++ +..+++|++|++++|.+.++.+ +..
T Consensus 122 i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~ 197 (347)
T 4fmz_A 122 ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LAS 197 (347)
T ss_dssp CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGG
T ss_pred ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccC
Confidence 444443 11145555555555333222235555666666666666555543 5566667777777776666644 566
Q ss_pred CCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEE
Q psy8550 206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285 (332)
Q Consensus 206 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 285 (332)
+++|+.+++++|.++.+++ +..+++|+.|++++|.++.+++ +..+++|++|++++|.+++++ .+..+++|+.|+
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ 271 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLN 271 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEE
Confidence 6777777777777766655 5677888999999998888755 788899999999999988874 578889999999
Q ss_pred cCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550 286 VGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332 (332)
Q Consensus 286 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l 332 (332)
+++|.+++++ .+..+++|+.|++++|++++.++..|+.++.|+.|
T Consensus 272 l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 272 VGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp CCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred ccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 9999998873 58889999999999999999999999988888753
No 66
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.92 E-value=3.6e-24 Score=183.07 Aligned_cols=163 Identities=29% Similarity=0.489 Sum_probs=141.8
Q ss_pred CCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh--hhcCCCCCcEEEeecCcCcccCCCCCCCC
Q psy8550 105 AFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS--AIQFYSSLQHVDLSHNQLVNIPIRGFEPQ 182 (332)
Q Consensus 105 ~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 182 (332)
..||..|.|... .++|.++.++.+|..++..+++|++++|.++.+++ .+..+++|++|++++|.++.+++..|..+
T Consensus 3 ~~CP~~C~C~~~--~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l 80 (220)
T 2v70_A 3 LACPEKCRCEGT--TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80 (220)
T ss_dssp -CCCTTCEEETT--EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCCCCCEECCC--EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCC
Confidence 469999999865 79999999999999999999999999999998743 57889999999999999999888888889
Q ss_pred CCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeC
Q psy8550 183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL 262 (332)
Q Consensus 183 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 262 (332)
++|++|++++|.++++++..|.++++|++|+|++|.++.+++..|..+++|+.|++++|.++.+.+..|..+++|+.|++
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 99999999999998888888888888999999988888888777888888888888888888887878888888888888
Q ss_pred CCCCCCC
Q psy8550 263 DDNQLRS 269 (332)
Q Consensus 263 ~~n~l~~ 269 (332)
++|.+..
T Consensus 161 ~~N~l~c 167 (220)
T 2v70_A 161 LANPFNC 167 (220)
T ss_dssp CSCCEEC
T ss_pred cCcCCcC
Confidence 8887764
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=4e-24 Score=202.06 Aligned_cols=246 Identities=20% Similarity=0.239 Sum_probs=112.7
Q ss_pred ccCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecC
Q psy8550 45 NFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKE 124 (332)
Q Consensus 45 ~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~ 124 (332)
.+..+......+..+|+++++|++|+.|++++|.+.+..+..+..+..+.......+ .. .....+++.+
T Consensus 12 ~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c----------~~-~~l~~L~l~~ 80 (454)
T 1jl5_A 12 FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC----------LD-RQAHELELNN 80 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHH----------HH-HTCSEEECTT
T ss_pred cchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhh----------hc-cCCCEEEecC
Confidence 345556666677899999999999999999998887655443332222221111111 00 1123455555
Q ss_pred CCccccCCCCCCCccEEEeecCCCccchhhh-----------------cCCCCCcEEEeecCcCcccCCCCCCCCCCCcE
Q psy8550 125 ANLDVIPITLNPSIQRLVLKYNRIKTVDSAI-----------------QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187 (332)
Q Consensus 125 ~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~-----------------~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 187 (332)
+.++.+|. +++++++|++++|.++.+|..+ ...++|++|++++|.+++++ .|+.+++|++
T Consensus 81 ~~l~~lp~-~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp--~~~~l~~L~~ 157 (454)
T 1jl5_A 81 LGLSSLPE-LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP--ELQNSSFLKI 157 (454)
T ss_dssp SCCSCCCS-CCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC--CCTTCTTCCE
T ss_pred CccccCCC-CcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc--ccCCCCCCCE
Confidence 55554443 3344555555555544444311 00135555555555555543 2555555555
Q ss_pred EEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCC
Q psy8550 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267 (332)
Q Consensus 188 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 267 (332)
|++++|++++++ .. ..+|++|++++|.++.+|. ++.+++|+.|++++|.+++++.. .++|++|++++|.+
T Consensus 158 L~l~~N~l~~lp-~~---~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 158 IDVDNNSLKKLP-DL---PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNIL 227 (454)
T ss_dssp EECCSSCCSCCC-CC---CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCC
T ss_pred EECCCCcCcccC-CC---cccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcC
Confidence 555555555442 11 1355555555555555442 45555555555555555544221 13555556666555
Q ss_pred CCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccc
Q psy8550 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMG 320 (332)
Q Consensus 268 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~ 320 (332)
..++ .++.+++|+.|++++|+++++++ .+++|+.|++++|++++++.
T Consensus 228 ~~lp--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~ 274 (454)
T 1jl5_A 228 EELP--ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPE 274 (454)
T ss_dssp SSCC--CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCC
T ss_pred Cccc--ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCc
Confidence 5554 25556666666666666665443 12456666666666665543
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.2e-25 Score=202.45 Aligned_cols=194 Identities=21% Similarity=0.182 Sum_probs=90.2
Q ss_pred CCCCCCCccEEEeecCCCc--cchhhhc-------CCCCCcEEEeecCcCcccCCCCC--CCCCCCcEEEcCCCcccccC
Q psy8550 131 PITLNPSIQRLVLKYNRIK--TVDSAIQ-------FYSSLQHVDLSHNQLVNIPIRGF--EPQEKLVELQLNHNKLSSVN 199 (332)
Q Consensus 131 p~~~~~~L~~L~l~~~~l~--~l~~~~~-------~l~~L~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~ 199 (332)
|..++..++.|++++|.++ .+|..+. ++++|++|++++|.+++..+..+ ..+++|++|++++|++++.
T Consensus 58 p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~- 136 (312)
T 1wwl_A 58 LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR- 136 (312)
T ss_dssp CHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-
T ss_pred HHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-
Confidence 6544444555555555543 2333332 44555555555555543333332 4455555555555555544
Q ss_pred ccccCCC-----CCCCEEEccCCCCCCCCccccCCCCCCcEeeccCC----------------------------CCccc
Q psy8550 200 NKTFIGL-----KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN----------------------------RISRI 246 (332)
Q Consensus 200 ~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n----------------------------~l~~~ 246 (332)
|..+..+ ++|++|++++|.++.+++..++.+++|++|++++| .++.+
T Consensus 137 ~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 216 (312)
T 1wwl_A 137 DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216 (312)
T ss_dssp SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH
T ss_pred hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch
Confidence 3344333 45555555555555544444444555555555555 44422
Q ss_pred ---ChhhcCCCCCCcEEeCCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccc
Q psy8550 247 ---DQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHS 322 (332)
Q Consensus 247 ---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 322 (332)
....+..+++|+.|++++|.+++.++ ..+..+++|+.|++++|.++.++. .+. ++|++||+++|+++++|.
T Consensus 217 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~--~~L~~L~Ls~N~l~~~p~-- 291 (312)
T 1wwl_A 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK-GLP--AKLSVLDLSYNRLDRNPS-- 291 (312)
T ss_dssp HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS-SCC--SEEEEEECCSSCCCSCCC--
T ss_pred HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh-hcc--CCceEEECCCCCCCCChh--
Confidence 11222334455555555555544332 233344555555555555554333 222 455555555555555532
Q ss_pred ccCCCCcc
Q psy8550 323 MALGDYLH 330 (332)
Q Consensus 323 ~~~l~~L~ 330 (332)
+..++.|+
T Consensus 292 ~~~l~~L~ 299 (312)
T 1wwl_A 292 PDELPQVG 299 (312)
T ss_dssp TTTSCEEE
T ss_pred HhhCCCCC
Confidence 44444444
No 69
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=5e-25 Score=212.86 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=42.2
Q ss_pred CCccEEEeecCC-Cccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEE
Q psy8550 136 PSIQRLVLKYNR-IKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLN 213 (332)
Q Consensus 136 ~~L~~L~l~~~~-l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 213 (332)
+++++|++++|. +..+|. .+.++++|++|++++|.+....+..++.+++|++|++++|.+..+++..+..+++|++|+
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence 344444444444 333332 344444444444444444444444444444444444444444333222233466777777
Q ss_pred ccCCCCCCC
Q psy8550 214 LRGNFLEDL 222 (332)
Q Consensus 214 L~~n~l~~~ 222 (332)
+++|.+++.
T Consensus 203 L~~n~l~~~ 211 (549)
T 2z81_A 203 LRDTNLARF 211 (549)
T ss_dssp EESCBCTTC
T ss_pred ccCCccccc
Confidence 777776653
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.4e-23 Score=181.57 Aligned_cols=193 Identities=22% Similarity=0.338 Sum_probs=175.1
Q ss_pred CCCceEEecCCCccccCCC-C--CCCccEEEeecCC-Cccchh-hhcCCCCCcEEEeec-CcCcccCCCCCCCCCCCcEE
Q psy8550 115 DETLVVTCKEANLDVIPIT-L--NPSIQRLVLKYNR-IKTVDS-AIQFYSSLQHVDLSH-NQLVNIPIRGFEPQEKLVEL 188 (332)
Q Consensus 115 ~~~~~~~c~~~~l~~lp~~-~--~~~L~~L~l~~~~-l~~l~~-~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L 188 (332)
.....++..++.++.+|.. + .+++++|++++|. ++.+++ .+.++++|++|++++ |.++.+++..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 3567899999999999874 3 2899999999997 998887 889999999999999 99999998999999999999
Q ss_pred EcCCCcccccCccccCCCCCCC---EEEccCC-CCCCCCccccCCCCCCc-EeeccCCCCcccChhhcCCCCCCcEEeCC
Q psy8550 189 QLNHNKLSSVNNKTFIGLKSLK---VLNLRGN-FLEDLPDRLFAPLSHLE-ELDLGQNRISRIDQACFEGLTALRILYLD 263 (332)
Q Consensus 189 ~l~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (332)
++++|.++++++ |..+++|+ +|++++| .++.+++..|..+++|+ .|++++|.++.+++..+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999999999744 88889998 9999999 99999998899999999 9999999999998877776 899999999
Q ss_pred CCC-CCCcCcccccCC-CCccEEEcCCCcCCccCchhcCCCCCCCEEEccCC
Q psy8550 264 DNQ-LRSVPTPSFIYL-GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 313 (332)
Q Consensus 264 ~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 313 (332)
+|. ++++++..|..+ ++|+.|++++|+++++++. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 995 999998899999 9999999999999998875 5678899999987
No 71
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=6.1e-25 Score=211.03 Aligned_cols=160 Identities=23% Similarity=0.314 Sum_probs=125.8
Q ss_pred cCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccC--ccccCCCCCCCEEEccCCCCCC-CCccccCCCCC
Q psy8550 156 QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVN--NKTFIGLKSLKVLNLRGNFLED-LPDRLFAPLSH 232 (332)
Q Consensus 156 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~ 232 (332)
..+++|++|++++|.+++..+..++.+++|++|++++|++++++ |..+.++++|++|++++|.++. +|...+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 45667777777777777765667777777788888777777642 3567777788888888888776 77666677778
Q ss_pred CcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccC
Q psy8550 233 LEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312 (332)
Q Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 312 (332)
|+.|++++|.+++..+..+. ++|+.|++++|+++.+|. .+..+++|+.|++++|+++++++..+..+++|++|++++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPK-QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccch-hhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence 88888888877655454443 689999999999998877 455899999999999999998887799999999999999
Q ss_pred CCCCCc
Q psy8550 313 AGLTNM 318 (332)
Q Consensus 313 n~l~~l 318 (332)
|.+++-
T Consensus 478 N~~~c~ 483 (520)
T 2z7x_B 478 NPWDCS 483 (520)
T ss_dssp SCBCCC
T ss_pred CCCccc
Confidence 999864
No 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=5.7e-24 Score=215.66 Aligned_cols=101 Identities=23% Similarity=0.382 Sum_probs=68.7
Q ss_pred CCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEc
Q psy8550 231 SHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310 (332)
Q Consensus 231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 310 (332)
++|+.|++++|.+..+.+..+..+++|+.|++++|.+.++++..|+.+++|+.|++++|.++++.+..|.++++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 45666666666666666666666667777777777776666666666677777777777776666666666777777777
Q ss_pred cCCCCCCcccccccCCCCccc
Q psy8550 311 RGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 311 s~n~l~~l~~~~~~~l~~L~~ 331 (332)
++|+++.+++..|..++.|+.
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCE
T ss_pred CCCCCCccChhhhcCCCCCCE
Confidence 777777776666666666654
No 73
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=9.6e-24 Score=200.19 Aligned_cols=180 Identities=28% Similarity=0.435 Sum_probs=105.8
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccC
Q psy8550 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRG 216 (332)
Q Consensus 137 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 216 (332)
++++|++++|.++.++ .+..+++|++|++++|.+..+.+ ++.+++|+.|++++|.++++ ..+..+++|++|++++
T Consensus 178 ~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 178 TLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLAN 252 (466)
T ss_dssp TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCC
Confidence 4444444444444443 24444555555555555444432 44455555555555555544 2355556666666666
Q ss_pred CCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy8550 217 NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 296 (332)
Q Consensus 217 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 296 (332)
|.++.+++ +..+++|+.|++++|.++.+++ +..+++|+.|++++|.+.++++ ++.+++|+.|++++|++++.++
T Consensus 253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 66665554 4556666666666666666543 5566666777777776666554 5666777777777777776655
Q ss_pred hhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 297 GAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 297 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
+..+++|+.|++++|+++++ ..++.++.|+.
T Consensus 327 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 357 (466)
T 1o6v_A 327 --VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW 357 (466)
T ss_dssp --GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred --hccCccCCEeECCCCccCCc--hhhccCCCCCE
Confidence 56677777777777777766 24666666654
No 74
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.3e-24 Score=204.45 Aligned_cols=202 Identities=20% Similarity=0.290 Sum_probs=145.2
Q ss_pred CCCceEEecCCCccccCCC-CCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC
Q psy8550 115 DETLVVTCKEANLDVIPIT-LNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193 (332)
Q Consensus 115 ~~~~~~~c~~~~l~~lp~~-~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n 193 (332)
..+..++..++.+..++.- -.+++++|++++|.+..+++ ++.+++|++|++++|.+..++ .+..+++|++|++++|
T Consensus 177 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANN 253 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSS
T ss_pred CCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCC
Confidence 3456677777777665531 12678888888888876655 667788888888888777663 4667778888888888
Q ss_pred cccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcc
Q psy8550 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP 273 (332)
Q Consensus 194 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 273 (332)
.+.+..+ +..+++|++|++++|.++.+++ +..+++|+.|++++|.++++++ +..+++|+.|++++|.++++++
T Consensus 254 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 326 (466)
T 1o6v_A 254 QISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP- 326 (466)
T ss_dssp CCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-
T ss_pred ccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-
Confidence 7777655 6777788888888887777766 5677777888888777777644 5667777777777777777665
Q ss_pred cccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 274 SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 274 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
++.+++|+.|++++|++++.. .+.++++|+.|++++|+++++++ +..++.|+.
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 379 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCE
T ss_pred -hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccch--hhcCCCCCE
Confidence 566777777777777777762 56777777777777777777766 566666543
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=2e-23 Score=187.49 Aligned_cols=193 Identities=21% Similarity=0.328 Sum_probs=172.9
Q ss_pred CCceEEecCCCccccCCCCC--CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC
Q psy8550 116 ETLVVTCKEANLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193 (332)
Q Consensus 116 ~~~~~~c~~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n 193 (332)
....+++.++.+..+|. +. +++++|++++|.++.+++ +..+++|++|++++|.+..++ .+..+++|++|++++|
T Consensus 42 ~L~~L~l~~~~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTST 117 (308)
T ss_dssp TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTS
T ss_pred CcCEEEeeCCCccCchh-hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCC
Confidence 45578888888888873 43 899999999999999988 999999999999999999874 6889999999999999
Q ss_pred cccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcc
Q psy8550 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP 273 (332)
Q Consensus 194 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 273 (332)
.++++++ +..+++|++|++++|.++.+++ ++.+++|+.|++++|.++.+++ +..+++|+.|++++|.++++++
T Consensus 118 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 118 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-
Confidence 9999854 8899999999999999999887 6889999999999999998865 8899999999999999999876
Q ss_pred cccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccc
Q psy8550 274 SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHS 322 (332)
Q Consensus 274 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 322 (332)
+..+++|+.|++++|++++.++ +..+++|+.|++++|+++..+...
T Consensus 191 -l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp -GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred -hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCeee
Confidence 7889999999999999999885 889999999999999998866544
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=2.2e-23 Score=187.20 Aligned_cols=182 Identities=25% Similarity=0.411 Sum_probs=166.6
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 215 (332)
+++++|+++++.++.++ .+..+++|++|++++|.+..+++ +..+++|++|++++|.+++++ .+..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECC
Confidence 68999999999999987 68899999999999999999875 899999999999999999873 68899999999999
Q ss_pred CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295 (332)
Q Consensus 216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 295 (332)
+|.++.+++ +..+++|+.|++++|.++.+++ +..+++|+.|++++|.++++++ +..+++|+.|++++|.+++++
T Consensus 116 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 116 STQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence 999999876 7899999999999999998865 8889999999999999999876 889999999999999999987
Q ss_pred chhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550 296 DGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332 (332)
Q Consensus 296 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l 332 (332)
+ +..+++|+.|++++|+++++++ +..++.|+.|
T Consensus 190 ~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 222 (308)
T 1h6u_A 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222 (308)
T ss_dssp G--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred h--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEE
Confidence 6 8899999999999999999885 7888887653
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.5e-24 Score=195.58 Aligned_cols=233 Identities=15% Similarity=0.127 Sum_probs=177.9
Q ss_pred hhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCccccCC-CCCCCccEE
Q psy8550 63 VRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPI-TLNPSIQRL 141 (332)
Q Consensus 63 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~-~~~~~L~~L 141 (332)
+..+.+|+.|++++|.+....+... .....++.++..++.+..++. .-.+++++|
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~------------------------~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 85 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADL------------------------APFTKLELLNLSSNVLYETLDLESLSTLRTL 85 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHH------------------------TTCTTCCEEECTTSCCEEEEEETTCTTCCEE
T ss_pred hccCCCCCEEECcCCccCcCCHHHh------------------------hCCCcCCEEECCCCcCCcchhhhhcCCCCEE
Confidence 4456678888888887776643221 122345678888887775543 223788999
Q ss_pred EeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCC
Q psy8550 142 VLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED 221 (332)
Q Consensus 142 ~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 221 (332)
++++|.++.++. .++|++|++++|.+..+++.. +++|++|++++|+++++.+..+..+++|++|++++|.++.
T Consensus 86 ~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 86 DLNNNYVQELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp ECCSSEEEEEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred ECcCCccccccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 999988887763 378899999999888877543 5778999999999988888888888899999999999888
Q ss_pred CCcccc-CCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcC
Q psy8550 222 LPDRLF-APLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 300 (332)
Q Consensus 222 ~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 300 (332)
+++..+ ..+++|++|++++|.++.++. ...+++|++|++++|.++++++. +..+++|+.|++++|+++++++ .+.
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~-~~~ 234 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALR 234 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh-Hhh
Confidence 766554 467889999999998888743 33578899999999999888774 7788899999999999987655 678
Q ss_pred CCCCCCEEEccCCCCC-CcccccccCCCCcc
Q psy8550 301 GLGRLSALDLRGAGLT-NMMGHSMALGDYLH 330 (332)
Q Consensus 301 ~l~~L~~L~Ls~n~l~-~l~~~~~~~l~~L~ 330 (332)
.+++|+.|++++|.++ +..+..+..++.|+
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 8889999999999888 55556666655543
No 78
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.4e-22 Score=191.58 Aligned_cols=224 Identities=17% Similarity=0.206 Sum_probs=154.4
Q ss_pred ccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCccccCCCCCCC
Q psy8550 58 IIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPS 137 (332)
Q Consensus 58 ~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~ 137 (332)
..+..++++.+|+.|+++++.+.+.+. ......++.+++.++.++.+|..-.++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------------------l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 86 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDMTG--------------------------IEKLTGLTKLICTSNNITTLDLSQNTN 86 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCCTT--------------------------GGGCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred ccccChhHcCCCCEEEccCCCcccChh--------------------------hcccCCCCEEEccCCcCCeEccccCCC
Confidence 345567888888888888877665421 122234556777777777776444477
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC
Q psy8550 138 IQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217 (332)
Q Consensus 138 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 217 (332)
+++|++++|.++.++ ++.+++|++|++++|.++.++ ++.+++|++|++++|+++++ + ++++++|++|++++|
T Consensus 87 L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 87 LTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLN 158 (457)
T ss_dssp CSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTC
T ss_pred CCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCC
Confidence 788888888777764 777778888888888777763 67777788888887777776 2 667777777777777
Q ss_pred C-CCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy8550 218 F-LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 296 (332)
Q Consensus 218 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 296 (332)
. +..++ ++.+++|+.|++++|.++.++ +..+++|+.|++++|.+++++ ++.+++|+.|++++|++++++
T Consensus 159 ~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip- 228 (457)
T 3bz5_A 159 KKITKLD---VTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID- 228 (457)
T ss_dssp SCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC-
T ss_pred Ccccccc---cccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC-
Confidence 3 43441 466777777777777777763 566677777777777777662 566777777777777777743
Q ss_pred hhcCCCCCCCEEEccCCCCCCcccccccCCC
Q psy8550 297 GAFNGLGRLSALDLRGAGLTNMMGHSMALGD 327 (332)
Q Consensus 297 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~ 327 (332)
++.+++|+.|++++|++++++...+..++
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELDVSTLSKLT 257 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCCCTTCTTCC
T ss_pred --ccccCCCCEEEeeCCcCCCcCHHHCCCCC
Confidence 56677777777777777777665555444
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.4e-24 Score=207.06 Aligned_cols=230 Identities=15% Similarity=0.123 Sum_probs=178.1
Q ss_pred hhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCccccCC-CCCCCccEEEe
Q psy8550 65 ILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPI-TLNPSIQRLVL 143 (332)
Q Consensus 65 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~-~~~~~L~~L~l 143 (332)
.+.+|+.|++++|.+....+.. ......+..++..++.+..++. .-.++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~------------------------~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~L 87 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAAD------------------------LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDL 87 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGG------------------------GTTCTTCCEEECTTSCCEEEEECTTCTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHH------------------------HhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEe
Confidence 3347888888888777654311 1233456678888888775443 22378999999
Q ss_pred ecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCC
Q psy8550 144 KYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223 (332)
Q Consensus 144 ~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 223 (332)
++|.++.++. .++|++|++++|.+..+++. .+++|+.|++++|.++++.|..|+++++|++|++++|.++..+
T Consensus 88 s~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 88 NNNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp CSSEEEEEEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred cCCcCCCCCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence 9998887764 37899999999999888754 3578999999999999988888888999999999999998876
Q ss_pred ccccC-CCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCC
Q psy8550 224 DRLFA-PLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 302 (332)
Q Consensus 224 ~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 302 (332)
+..+. .+++|+.|++++|.++++++ ...+++|+.|++++|.++++++ .++.+++|+.|++++|.++++++ .+..+
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~-~l~~l 236 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK-ALRFS 236 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECT-TCCCC
T ss_pred hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccch-hhccC
Confidence 65554 68899999999999988744 3458899999999999999887 48888999999999999998665 58888
Q ss_pred CCCCEEEccCCCCC-CcccccccCCCCc
Q psy8550 303 GRLSALDLRGAGLT-NMMGHSMALGDYL 329 (332)
Q Consensus 303 ~~L~~L~Ls~n~l~-~l~~~~~~~l~~L 329 (332)
++|+.|++++|.+. +..+..+..++.|
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred CCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 99999999999888 4444555554443
No 80
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.3e-22 Score=191.96 Aligned_cols=206 Identities=19% Similarity=0.211 Sum_probs=124.5
Q ss_pred CCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCC
Q psy8550 47 KSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEAN 126 (332)
Q Consensus 47 ~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~ 126 (332)
..++.....+..+| .++.+.+|+.|++++|.+++.. ......++.+++.++.
T Consensus 45 ~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---------------------------~~~l~~L~~L~Ls~N~ 96 (457)
T 3bz5_A 45 TSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---------------------------LSQNTNLTYLACDSNK 96 (457)
T ss_dssp CEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---------------------------CTTCTTCSEEECCSSC
T ss_pred CEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---------------------------cccCCCCCEEECcCCC
Confidence 33444444455555 5777777887777777666531 0112334566666666
Q ss_pred ccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCC
Q psy8550 127 LDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGL 206 (332)
Q Consensus 127 l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 206 (332)
+..+|..-.+++++|++++|.++.++ ++.+++|++|++++|.++.++ ++.+++|++|++++|...+.. .+..+
T Consensus 97 l~~~~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l 169 (457)
T 3bz5_A 97 LTNLDVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQ 169 (457)
T ss_dssp CSCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTC
T ss_pred CceeecCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccC
Confidence 66665433466777777777766664 666677777777777766652 556666666666666332221 25566
Q ss_pred CCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEc
Q psy8550 207 KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 286 (332)
Q Consensus 207 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 286 (332)
++|++|++++|.++.++ ++.+++|+.|++++|.++.++ ++.+++|+.|++++|+++++| ++.+++|+.|++
T Consensus 170 ~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l 240 (457)
T 3bz5_A 170 TQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDC 240 (457)
T ss_dssp TTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEEC
T ss_pred CcCCEEECCCCccceec---cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC---ccccCCCCEEEe
Confidence 66666666666666654 455666666666666666552 555666666666666666654 455666666666
Q ss_pred CCCcCCccCc
Q psy8550 287 GLNVFTTLAD 296 (332)
Q Consensus 287 ~~n~l~~~~~ 296 (332)
++|++++.++
T Consensus 241 ~~N~l~~~~~ 250 (457)
T 3bz5_A 241 SVNPLTELDV 250 (457)
T ss_dssp CSSCCSCCCC
T ss_pred eCCcCCCcCH
Confidence 6666666554
No 81
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.90 E-value=3.6e-23 Score=175.13 Aligned_cols=180 Identities=29% Similarity=0.336 Sum_probs=163.4
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCC
Q psy8550 139 QRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218 (332)
Q Consensus 139 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 218 (332)
+.++.+++.++.+|..+ .++|++|++++|.++.+++..|..+++|++|++++|+++.+++..|.++++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56788888999888644 4699999999999999998889999999999999999999988889999999999999999
Q ss_pred CCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchh
Q psy8550 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA 298 (332)
Q Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 298 (332)
++.+++..+..+++|++|++++|.++.+++..+..+++|++|++++|.++++++..+..+++|+.|++++|.+.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 999999888999999999999999999988888999999999999999999999889999999999999997764
Q ss_pred cCCCCCCCEEEccCCCCCCcccccccCCC
Q psy8550 299 FNGLGRLSALDLRGAGLTNMMGHSMALGD 327 (332)
Q Consensus 299 ~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~ 327 (332)
.+++|+.|+++.|++++..|..++.++
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred --CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 456889999999999988777777654
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.8e-23 Score=198.03 Aligned_cols=203 Identities=20% Similarity=0.205 Sum_probs=173.3
Q ss_pred CCceEEecCCCccccCC-CCC--CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCC
Q psy8550 116 ETLVVTCKEANLDVIPI-TLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192 (332)
Q Consensus 116 ~~~~~~c~~~~l~~lp~-~~~--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 192 (332)
....++..++.+..+|. .+. ++|++|++++|.++.+++ +..+++|++|++++|.++.+++ .++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcC
Confidence 35578888888887763 333 789999999999986665 8899999999999999888764 27899999999
Q ss_pred CcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcC-CCCCCcEEeCCCCCCCCcC
Q psy8550 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE-GLTALRILYLDDNQLRSVP 271 (332)
Q Consensus 193 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~ 271 (332)
|.++++++. .+++|+.|++++|.++.+++..++.+++|+.|++++|.++++.+..+. .+++|+.|++++|.+++++
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 999988664 357899999999999999887788899999999999999988777775 7899999999999999986
Q ss_pred cccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 272 TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 272 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
+ +..+++|+.|++++|.++++++. +..+++|+.|++++|.++++|+. +..++.|+.
T Consensus 186 ~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~ 241 (487)
T 3oja_A 186 G--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEH 241 (487)
T ss_dssp C--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCE
T ss_pred c--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCE
Confidence 5 44689999999999999998885 88999999999999999998764 777777654
No 83
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=2.2e-23 Score=187.90 Aligned_cols=203 Identities=20% Similarity=0.205 Sum_probs=171.5
Q ss_pred CCceEEecCCCccccCC-CC--CCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCC
Q psy8550 116 ETLVVTCKEANLDVIPI-TL--NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192 (332)
Q Consensus 116 ~~~~~~c~~~~l~~lp~-~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 192 (332)
..+.++..++.+..++. .+ .+++++|++++|.++.+++ +..+++|++|++++|.++++++ .++|++|++++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~ 108 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAAN 108 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCS
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC-----CCCcCEEECCC
Confidence 35578888888887763 22 2789999999999887665 8889999999999999887763 37899999999
Q ss_pred CcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhc-CCCCCCcEEeCCCCCCCCcC
Q psy8550 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF-EGLTALRILYLDDNQLRSVP 271 (332)
Q Consensus 193 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~ 271 (332)
|.++++.+.. +++|++|++++|.++.+++..++.+++|+.|++++|.++.+.+..+ ..+++|++|++++|.+++++
T Consensus 109 n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 109 NNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp SCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 9998886544 5789999999999999988888889999999999999998877666 46899999999999999986
Q ss_pred cccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 272 TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 272 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
. ...+++|+.|++++|+++++++. +..+++|+.|++++|+++++++ .+..++.|+.
T Consensus 186 ~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~-~~~~l~~L~~ 241 (317)
T 3o53_A 186 G--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEH 241 (317)
T ss_dssp C--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCE
T ss_pred c--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh-HhhcCCCCCE
Confidence 5 33589999999999999998875 8899999999999999998865 5777777764
No 84
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.89 E-value=6.7e-23 Score=188.15 Aligned_cols=177 Identities=28% Similarity=0.359 Sum_probs=162.5
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCC-CCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC
Q psy8550 139 QRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFE-PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217 (332)
Q Consensus 139 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 217 (332)
+.++++++.++.+|..+. ..++.|++++|.++.+++..|. .+++|++|++++|+++++.+..|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578999999999997554 4689999999999999988888 9999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccc---cCCCCccEEEcCCCcCCcc
Q psy8550 218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF---IYLGMLAELRVGLNVFTTL 294 (332)
Q Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~ 294 (332)
.++.+++..|..+++|+.|++++|.++.+.+..|..+++|+.|+|++|.+++++...| ..+++|+.|++++|+++++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 9999999889999999999999999999999999999999999999999999998777 5689999999999999999
Q ss_pred CchhcCCCCC--CCEEEccCCCCCC
Q psy8550 295 ADGAFNGLGR--LSALDLRGAGLTN 317 (332)
Q Consensus 295 ~~~~~~~l~~--L~~L~Ls~n~l~~ 317 (332)
++..+..++. ++.|++++|.+..
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CHHHhhhccHhhcceEEecCCCccC
Confidence 9888888877 4889999998864
No 85
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.88 E-value=4.7e-22 Score=169.91 Aligned_cols=153 Identities=27% Similarity=0.463 Sum_probs=144.2
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCC
Q psy8550 139 QRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218 (332)
Q Consensus 139 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 218 (332)
+.++++++.++.+|..+. +++++|++++|.++.+++..|..+++|++|++++|+++++.|..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578899999999998554 789999999999999998899999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy8550 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293 (332)
Q Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 293 (332)
++.+++..|..+++|+.|++++|.++.+.+..|..+++|+.|++++|.++++++..|..+++|+.|++++|++..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999999989999999999999999999999999999999999999999999999889999999999999999864
No 86
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=6.5e-22 Score=191.03 Aligned_cols=186 Identities=22% Similarity=0.300 Sum_probs=163.1
Q ss_pred CCceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcc
Q psy8550 116 ETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195 (332)
Q Consensus 116 ~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l 195 (332)
....+++.++.+..+|..++++++.|++++|.++.+| ..+++|++|++++|.++.++. +.. +|++|++++|.+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcC
Confidence 4668999999999999989999999999999999998 568999999999999999875 554 999999999999
Q ss_pred cccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccc
Q psy8550 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275 (332)
Q Consensus 196 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 275 (332)
+++++ .+++|++|++++|.++.+|. .+++|+.|++++|.++.++. +. ++|+.|++++|.++.+|. +
T Consensus 133 ~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~ 198 (571)
T 3cvr_A 133 TMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--V 198 (571)
T ss_dssp SCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--C
T ss_pred CCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh--H
Confidence 99754 67899999999999999886 46899999999999999765 65 899999999999998887 5
Q ss_pred cCCCCc-------cEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccC
Q psy8550 276 IYLGML-------AELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMAL 325 (332)
Q Consensus 276 ~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~ 325 (332)
.. +| +.|++++|+++.+++ .+..+++|+.|+|++|++++..+..+..
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C----------CCEEEECCSSCCCCCCG-GGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred HH--hhhcccccceEEecCCCcceecCH-HHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 43 77 999999999998776 5666999999999999999888777654
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=182.34 Aligned_cols=196 Identities=17% Similarity=0.150 Sum_probs=158.0
Q ss_pred CceEEecCCCcc-ccCCCC----CCCccEEEeecCCCcc----chh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCc
Q psy8550 117 TLVVTCKEANLD-VIPITL----NPSIQRLVLKYNRIKT----VDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLV 186 (332)
Q Consensus 117 ~~~~~c~~~~l~-~lp~~~----~~~L~~L~l~~~~l~~----l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 186 (332)
.+.++..++.+. ..|..+ .+++++|++++|.++. ++. .+..+++|++|++++|.+..+++..|+.+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 557888888776 455544 3789999999999884 222 556789999999999999999888999999999
Q ss_pred EEEcCCCcccc---cC-ccccCCCCCCCEEEccCCCCCCCCcc---ccCCCCCCcEeeccCCCCcccChhhcCCC---CC
Q psy8550 187 ELQLNHNKLSS---VN-NKTFIGLKSLKVLNLRGNFLEDLPDR---LFAPLSHLEELDLGQNRISRIDQACFEGL---TA 256 (332)
Q Consensus 187 ~L~l~~n~l~~---~~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~ 256 (332)
+|++++|++.+ +. +..+..+++|++|++++|.++.++.. .++.+++|++|++++|.++...|..+..+ ++
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~ 252 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSA 252 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCc
Confidence 99999998765 32 23346789999999999999876653 34677899999999999998866556665 69
Q ss_pred CcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCC
Q psy8550 257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317 (332)
Q Consensus 257 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 317 (332)
|++|++++|+++.+|.. + .++|+.|++++|++++++. +..+++|+.|++++|+++.
T Consensus 253 L~~L~Ls~N~l~~lp~~-~--~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 253 LNSLNLSFAGLEQVPKG-L--PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCEECCSSCCCSCCSC-C--CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred CCEEECCCCCCCchhhh-h--cCCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence 99999999999988763 3 2799999999999998743 6788999999999999875
No 88
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=6.4e-22 Score=193.13 Aligned_cols=206 Identities=25% Similarity=0.291 Sum_probs=124.2
Q ss_pred CCCCCcccC-CCceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCC
Q psy8550 107 CPPDCDCND-ETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185 (332)
Q Consensus 107 ~p~~c~c~~-~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 185 (332)
||..|.|.. ....++|.++.++.+|..++++++.|++++|.++.+|. .+++|++|++++|.++.++. .+++|
T Consensus 31 ~~~~~~c~~~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L 103 (622)
T 3g06_A 31 VQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGL 103 (622)
T ss_dssp HHHHHHHHHHCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTC
T ss_pred CcccccccCCCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCC
Confidence 455556653 25578888888888888888888888888888887776 56778888888887777663 45666
Q ss_pred cEEEcCCCcccccCccccC-----------------CCCCCCEEEccCCCCCCCCccccCCC-----------------C
Q psy8550 186 VELQLNHNKLSSVNNKTFI-----------------GLKSLKVLNLRGNFLEDLPDRLFAPL-----------------S 231 (332)
Q Consensus 186 ~~L~l~~n~l~~~~~~~~~-----------------~l~~L~~L~L~~n~l~~~~~~~~~~l-----------------~ 231 (332)
++|++++|.++++++ .+. .+++|++|++++|.++.+|.. +..+ +
T Consensus 104 ~~L~Ls~N~l~~l~~-~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~ 181 (622)
T 3g06_A 104 LELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLTSLPMLPS 181 (622)
T ss_dssp CEEEECSCCCCCCCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSCCCCCCT
T ss_pred CEEECcCCcCCCCCC-CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCc-cCCCCEEECCCCCCCCCcccCC
Confidence 666666666665532 110 124556666666655554431 1111 4
Q ss_pred CCcEeeccCCCCcccChhhcCC-----------------CCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy8550 232 HLEELDLGQNRISRIDQACFEG-----------------LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294 (332)
Q Consensus 232 ~L~~L~L~~n~l~~~~~~~~~~-----------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 294 (332)
+|+.|++++|.++.++.. +.. +++|+.|++++|.+++++ ..+++|+.|++++|.++++
T Consensus 182 ~L~~L~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~l 256 (622)
T 3g06_A 182 GLQELSVSDNQLASLPTL-PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSL 256 (622)
T ss_dssp TCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC
T ss_pred CCcEEECCCCCCCCCCCc-cchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcC
Confidence 455555555555544221 110 134555555555555544 2345666666666666655
Q ss_pred CchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 295 ADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 295 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
++ .+++|+.|++++|+|+.+|+ .|..++.|+.
T Consensus 257 p~----~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L~~ 288 (622)
T 3g06_A 257 PM----LPSGLLSLSVYRNQLTRLPE-SLIHLSSETT 288 (622)
T ss_dssp CC----CCTTCCEEECCSSCCCSCCG-GGGGSCTTCE
T ss_pred Cc----ccccCcEEeCCCCCCCcCCH-HHhhccccCE
Confidence 44 45677777777777777654 4666666654
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.88 E-value=3.8e-22 Score=177.71 Aligned_cols=175 Identities=30% Similarity=0.407 Sum_probs=143.1
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 215 (332)
++++.|++++|.++.++. +..+++|++|++++|.++.+++ +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECT
T ss_pred CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCEEECC
Confidence 577888888888888754 7788889999999888888775 788888999999888888863 37888889999999
Q ss_pred CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295 (332)
Q Consensus 216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 295 (332)
+|.++.++. +..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++++++ +..+++|+.|++++|.+++++
T Consensus 121 ~n~i~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 121 HNGISDING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp TSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred CCcCCCChh--hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh
Confidence 988888743 57788899999998888877 347788889999999998888776 778888999999999888864
Q ss_pred chhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550 296 DGAFNGLGRLSALDLRGAGLTNMMGHSM 323 (332)
Q Consensus 296 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 323 (332)
.+..+++|+.|++++|+++..+...+
T Consensus 195 --~l~~l~~L~~L~l~~n~i~~~~~~~~ 220 (291)
T 1h6t_A 195 --ALAGLKNLDVLELFSQECLNKPINHQ 220 (291)
T ss_dssp --GGTTCTTCSEEEEEEEEEECCCEECC
T ss_pred --hhccCCCCCEEECcCCcccCCccccc
Confidence 37888889999999888876655443
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.87 E-value=2.2e-21 Score=166.73 Aligned_cols=162 Identities=29% Similarity=0.485 Sum_probs=135.1
Q ss_pred CCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccch-hhhcCCCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550 106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184 (332)
Q Consensus 106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~ 184 (332)
.....|.|... .++|.+..+..+|.++++++++|++++|.++.++ ..+..+++|++|++++|.+..+++..|..+++
T Consensus 12 ~~~~~~~Cs~~--~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 12 ACPSQCSCSGT--TVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89 (229)
T ss_dssp CCCTTCEEETT--EEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCCEEeCC--EeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC
Confidence 34566778644 6999999999999999999999999999998774 47888899999999999988888778888888
Q ss_pred CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCC
Q psy8550 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDD 264 (332)
Q Consensus 185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (332)
|++|++++|+++.+++..|..+++|++|++++|.++.+|... ..+++|+.|++++|.++.+++..+..+++|+.|++++
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 999999888888888777888888888888888888887664 7778888888888888888777778888888888888
Q ss_pred CCCCCc
Q psy8550 265 NQLRSV 270 (332)
Q Consensus 265 n~l~~~ 270 (332)
|.+...
T Consensus 169 N~~~c~ 174 (229)
T 3e6j_A 169 NPWDCE 174 (229)
T ss_dssp SCBCTT
T ss_pred CCccCC
Confidence 877643
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=6.3e-22 Score=177.81 Aligned_cols=191 Identities=15% Similarity=0.081 Sum_probs=157.4
Q ss_pred CCccEEEeecCCCc-cchhhh--cCCCCCcEEEeecCcCcccCC----CCCCCCCCCcEEEcCCCcccccCccccCCCCC
Q psy8550 136 PSIQRLVLKYNRIK-TVDSAI--QFYSSLQHVDLSHNQLVNIPI----RGFEPQEKLVELQLNHNKLSSVNNKTFIGLKS 208 (332)
Q Consensus 136 ~~L~~L~l~~~~l~-~l~~~~--~~l~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 208 (332)
+++++|++++|.+. ..|..+ ..+++|++|++++|.+....+ ..+..+++|++|++++|.+.++.+..|+++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 56999999999998 455566 899999999999999987433 34457899999999999999999999999999
Q ss_pred CCEEEccCCCCCC---CCc-cccCCCCCCcEeeccCCCCcccChh---hcCCCCCCcEEeCCCCCCCCcCcccccCC---
Q psy8550 209 LKVLNLRGNFLED---LPD-RLFAPLSHLEELDLGQNRISRIDQA---CFEGLTALRILYLDDNQLRSVPTPSFIYL--- 278 (332)
Q Consensus 209 L~~L~L~~n~l~~---~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--- 278 (332)
|++|++++|.+.. ++. ..++.+++|++|++++|.++.++.. .++.+++|++|++++|.+.+..+..++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 9999999999764 332 2246789999999999999866432 35678999999999999999855466665
Q ss_pred CCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 279 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 279 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
++|++|++++|+++.++. .+. ++|+.||+++|++++++. +..++.|+.
T Consensus 251 ~~L~~L~Ls~N~l~~lp~-~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~~ 298 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPK-GLP--AKLRVLDLSSNRLNRAPQ--PDELPEVDN 298 (310)
T ss_dssp TTCCCEECCSSCCCSCCS-CCC--SCCSCEECCSCCCCSCCC--TTSCCCCSC
T ss_pred CcCCEEECCCCCCCchhh-hhc--CCCCEEECCCCcCCCCch--hhhCCCccE
Confidence 699999999999997765 343 799999999999999854 566666654
No 92
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=7.4e-21 Score=179.68 Aligned_cols=253 Identities=19% Similarity=0.219 Sum_probs=184.0
Q ss_pred CCCCCCCCc-----cCCchhhHhhh-hccchhhhhhhhh-------------hhhhcCccccchhhhhHHHHHHHHHHHH
Q psy8550 37 GFQNNPKSN-----FKSPTEILKSL-LIIPFEVRILNKL-------------RIFINDSVLFSSVSDITMWSLLVTTALL 97 (332)
Q Consensus 37 g~~~~p~~~-----~~~~~~~~~~l-~~iP~~~~~l~~L-------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (332)
.+..+|+++ +..++.....+ ..+|++++++++| +.++++++.+++.+... ..+..+
T Consensus 22 ~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~-----~~L~~L 96 (454)
T 1jl5_A 22 NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELP-----PHLESL 96 (454)
T ss_dssp ------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCC-----TTCSEE
T ss_pred chhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCc-----CCCCEE
Confidence 335666433 22333333333 5899999998887 45666666655532211 000000
Q ss_pred HHhhcCCCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCC
Q psy8550 98 LLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIR 177 (332)
Q Consensus 98 ~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~ 177 (332)
..........|... ...+.+++.++.+..+|. +++++++|++++|.++.+| .++++++|++|++++|+++.++.
T Consensus 97 ~l~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~~-~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~- 170 (454)
T 1jl5_A 97 VASCNSLTELPELP---QSLKSLLVDNNNLKALSD-LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPD- 170 (454)
T ss_dssp ECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCS-CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCC-
T ss_pred EccCCcCCcccccc---CCCcEEECCCCccCcccC-CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCC-
Confidence 01111222233322 456678888888887774 4579999999999999998 59999999999999999998763
Q ss_pred CCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCC
Q psy8550 178 GFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTAL 257 (332)
Q Consensus 178 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (332)
. ..+|++|++++|.++++ | .++++++|++|++++|.++++|.. ..+|++|++++|.++.++ . ++.+++|
T Consensus 171 ~---~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp-~-~~~l~~L 239 (454)
T 1jl5_A 171 L---PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP-E-LQNLPFL 239 (454)
T ss_dssp C---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCC-C-CTTCTTC
T ss_pred C---cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCccc-c-cCCCCCC
Confidence 2 35999999999999997 4 589999999999999999988763 258999999999999875 3 8899999
Q ss_pred cEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcc
Q psy8550 258 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMM 319 (332)
Q Consensus 258 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~ 319 (332)
++|++++|++++++. .+++|+.|++++|+++++++ ..++|+.|++++|++++++
T Consensus 240 ~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 240 TTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp CEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSEES
T ss_pred CEEECCCCcCCcccc----cccccCEEECCCCcccccCc----ccCcCCEEECcCCccCccc
Confidence 999999999999875 24899999999999999665 2478999999999998865
No 93
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=163.38 Aligned_cols=138 Identities=33% Similarity=0.603 Sum_probs=127.6
Q ss_pred CCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550 105 AFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184 (332)
Q Consensus 105 ~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~ 184 (332)
..||..|.|... .++|.++.++.+|.++++++++|++++|.++.+|..+..+++|++|++++|.++.+++..|.++++
T Consensus 2 ~~CP~~C~C~~~--~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 2 SRCPTECTCLDT--VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79 (193)
T ss_dssp --CCTTCEEETT--EEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCCCEeCCC--EEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC
Confidence 359999999754 799999999999999999999999999999999999999999999999999999999889999999
Q ss_pred CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCc
Q psy8550 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244 (332)
Q Consensus 185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (332)
|++|++++|+++.+++..|.++++|++|+|++|.++.+++..|..+++|+.|++++|.+.
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999999999999999989999999999999999999999888888999999999998775
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.87 E-value=2.2e-21 Score=165.71 Aligned_cols=155 Identities=24% Similarity=0.385 Sum_probs=139.5
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCC-CCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC
Q psy8550 139 QRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPI-RGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217 (332)
Q Consensus 139 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 217 (332)
+.++++++.++.+|..+. ..+++|++++|.++.+++ ..|..+++|++|++++|.++++.+.+|.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 578999999999987553 467899999999999854 56889999999999999999998889999999999999999
Q ss_pred CCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550 218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295 (332)
Q Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 295 (332)
.++.+++..|..+++|++|++++|.++.+.+..|..+++|+.|++++|.++++++..|..+++|+.|++++|++....
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 999999988899999999999999999998888999999999999999999998888999999999999999987543
No 95
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=3.7e-21 Score=187.76 Aligned_cols=237 Identities=23% Similarity=0.251 Sum_probs=169.5
Q ss_pred CCCCCCCCCC---ccCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy8550 35 HPGFQNNPKS---NFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDC 111 (332)
Q Consensus 35 ~~g~~~~p~~---~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c 111 (332)
..++..+|.. .++.+.+....+..+|. .+.+|+.|++++|.++..+ .
T Consensus 49 ~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp-------------------------~-- 98 (622)
T 3g06_A 49 ESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP-------------------------V-- 98 (622)
T ss_dssp SSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCC-------------------------C--
T ss_pred CCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCC-------------------------C--
Confidence 3344455532 34555555566677777 4677777778777665432 2
Q ss_pred cccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCC----------
Q psy8550 112 DCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEP---------- 181 (332)
Q Consensus 112 ~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~---------- 181 (332)
....+..+++.++.+..+|. ..++++.|++++|.++.+|.. +++|++|++++|.++.++. .+..
T Consensus 99 -~l~~L~~L~Ls~N~l~~l~~-~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 99 -LPPGLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQ 172 (622)
T ss_dssp -CCTTCCEEEECSCCCCCCCC-CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSC
T ss_pred -CCCCCCEEECcCCcCCCCCC-CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC-ccCCCCEEECCCCC
Confidence 22446678888888888887 567888888888888888763 4788888888888877652 2211
Q ss_pred -------CCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCC
Q psy8550 182 -------QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254 (332)
Q Consensus 182 -------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (332)
+++|+.|++++|.++++++ .+++|+.|++++|.++.+|.. +++|+.|++++|.++.++ ..+
T Consensus 173 l~~l~~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~~----~~~L~~L~Ls~N~L~~lp----~~l 240 (622)
T 3g06_A 173 LTSLPMLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLP----VLP 240 (622)
T ss_dssp CSCCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCC----CCC
T ss_pred CCCCcccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCCC----CCCCCEEEccCCccCcCC----CCC
Confidence 1445555555555555432 134566666666666655532 378999999999999875 456
Q ss_pred CCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCccccccc
Q psy8550 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA 324 (332)
Q Consensus 255 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~ 324 (332)
++|+.|++++|.++.++. .+++|+.|++++|+++.++ ..+.++++|+.|++++|.+++..+..+.
T Consensus 241 ~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 241 SELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCC-GGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCC-HHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 899999999999999886 5789999999999999775 4799999999999999999988777654
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=9.4e-21 Score=162.79 Aligned_cols=155 Identities=30% Similarity=0.354 Sum_probs=130.3
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC
Q psy8550 138 IQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217 (332)
Q Consensus 138 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 217 (332)
-+.++.+++.++.+|..+. ++|++|++++|.++.+.+..|..+++|++|++++|+++.+++..|.++++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3567888888888887543 78899999999998888888888899999999999988888788888889999999999
Q ss_pred CCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550 218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295 (332)
Q Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 295 (332)
.++.+++..|..+++|+.|++++|.++.++ ..+..+++|++|++++|.++++++..+..+++|+.|++++|++....
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 988888887888888999999988888774 44677888888888888888888877888888888888888887654
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.85 E-value=7.3e-22 Score=173.32 Aligned_cols=173 Identities=23% Similarity=0.310 Sum_probs=129.0
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 215 (332)
.++..++++++.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++++|+++++++ +.++++|++|+++
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 44566667777777766 4667778888888888877765 56777888888888888887755 7778888888888
Q ss_pred CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295 (332)
Q Consensus 216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 295 (332)
+|.++.+++. .. ++|+.|++++|.++.++ .+..+++|+.|++++|++++++ .++.+++|+.|++++|++++.
T Consensus 94 ~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKNLNGI--PS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSCCTTC--CC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCCcCcc--cc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-
Confidence 8888777653 23 77888888888887763 3777788888888888887774 477778888888888888777
Q ss_pred chhcCCCCCCCEEEccCCCCCCccccc
Q psy8550 296 DGAFNGLGRLSALDLRGAGLTNMMGHS 322 (332)
Q Consensus 296 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 322 (332)
..+..+++|+.|++++|+++..+...
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~~~~~ 191 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNEPVKY 191 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECCCEEC
T ss_pred -HHhccCCCCCEEeCCCCcccCCcccc
Confidence 45777788888888888777665443
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.85 E-value=5.1e-21 Score=186.47 Aligned_cols=173 Identities=31% Similarity=0.416 Sum_probs=101.8
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 215 (332)
++|+.|++++|.+..++ .+..+++|+.|++++|.+..+++ +..+++|+.|+|++|.+..++ .+..+++|+.|+|+
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLE 117 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECT
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEec
Confidence 34555666666666554 35556666666666666665553 555666666666666665542 45566666666666
Q ss_pred CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295 (332)
Q Consensus 216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 295 (332)
+|.+..++. +..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.+.++++ +..+++|+.|+|++|++++++
T Consensus 118 ~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 118 HNGISDING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp TSCCCCCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred CCCCCCCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh
Confidence 666665532 45566666666666666655 235556666666666666665554 555666666666666666542
Q ss_pred chhcCCCCCCCEEEccCCCCCCcccc
Q psy8550 296 DGAFNGLGRLSALDLRGAGLTNMMGH 321 (332)
Q Consensus 296 ~~~~~~l~~L~~L~Ls~n~l~~l~~~ 321 (332)
.+..+++|+.|+|++|++...+..
T Consensus 192 --~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 192 --ALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp --GGTTCTTCSEEECCSEEEECCCCC
T ss_pred --HHccCCCCCEEEccCCcCcCCccc
Confidence 355666666666666665554443
No 99
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.85 E-value=1.3e-20 Score=157.48 Aligned_cols=137 Identities=32% Similarity=0.517 Sum_probs=108.6
Q ss_pred CCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh--hhcCCCCCcEEEeecCcCcccCCCCCCCCC
Q psy8550 106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS--AIQFYSSLQHVDLSHNQLVNIPIRGFEPQE 183 (332)
Q Consensus 106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~ 183 (332)
.||..|.|.. ..++|.++.++.+|..++.++++|++++|.++.+++ .+..+++|++|++++|.++.+.+..|..++
T Consensus 1 ~CP~~C~C~~--~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 78 (192)
T 1w8a_A 1 DCPAMCHCEG--TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78 (192)
T ss_dssp CCCTTSEEET--TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CcCCCCEECC--CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc
Confidence 4999999986 479999999999999888889999998888887775 377788888888888888877777777777
Q ss_pred CCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCc
Q psy8550 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244 (332)
Q Consensus 184 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (332)
+|++|++++|+++++++..|.++++|++|++++|.++.+++..+..+++|+.|++++|.+.
T Consensus 79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8888888887777777777777777777777777777766666666777777777777665
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.8e-20 Score=171.19 Aligned_cols=210 Identities=18% Similarity=0.193 Sum_probs=174.1
Q ss_pred CCCceEEecCCCccccCCCC-C--CCccEEEeecCCCc-cchh-hhcCCCCCcE-EEeecCcCcccCCCCCCCCCCCcEE
Q psy8550 115 DETLVVTCKEANLDVIPITL-N--PSIQRLVLKYNRIK-TVDS-AIQFYSSLQH-VDLSHNQLVNIPIRGFEPQEKLVEL 188 (332)
Q Consensus 115 ~~~~~~~c~~~~l~~lp~~~-~--~~L~~L~l~~~~l~-~l~~-~~~~l~~L~~-L~l~~~~l~~~~~~~~~~l~~L~~L 188 (332)
.....++..++.++.+|.+. . ++|++|++++|.+. .+|. .|.+++++++ +.+.+|++..+++..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 34668999999999999754 3 79999999999975 5766 6788998876 5667789999999999999999999
Q ss_pred EcCCCcccccCccccCCCCCCCEEEccC-CCCCCCCccccCCCC-CCcEeeccCCCCcccChhhcCCCCCCcEEeCC-CC
Q psy8550 189 QLNHNKLSSVNNKTFIGLKSLKVLNLRG-NFLEDLPDRLFAPLS-HLEELDLGQNRISRIDQACFEGLTALRILYLD-DN 265 (332)
Q Consensus 189 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n 265 (332)
++++|++..+++..+....++..+++.+ +.+..+++..|..+. .++.|++++|+++.+++..+. ..+|+.+++. +|
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCC
Confidence 9999999999888887888889999965 678888887777664 688999999999999877665 4689999997 58
Q ss_pred CCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCC-CCCCcccccccCCCCcc
Q psy8550 266 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA-GLTNMMGHSMALGDYLH 330 (332)
Q Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~~l~~L~ 330 (332)
.++.+++..|+.+++|+.|++++|+++.+++..+. +|+.|.+.++ .++.+|+ +..+..|+
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~--l~~l~~L~ 249 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT--LEKLVALM 249 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC--TTTCCSCC
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC--chhCcChh
Confidence 89999998999999999999999999999886555 4556665554 6777774 55555554
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=3.2e-20 Score=165.24 Aligned_cols=176 Identities=24% Similarity=0.336 Sum_probs=152.7
Q ss_pred EeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCC
Q psy8550 142 VLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED 221 (332)
Q Consensus 142 ~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 221 (332)
.+..+.++.+. .+..+++|++|++++|.+..++ .+..+++|++|++++|+++++.+ +.++++|++|++++|.++.
T Consensus 30 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 30 NLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred HhcCCCccccc-chhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC
Confidence 34444555432 2456789999999999999885 48889999999999999999866 8999999999999999998
Q ss_pred CCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCC
Q psy8550 222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 301 (332)
Q Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 301 (332)
++. +..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++++ ..++.+++|+.|++++|+++++++ +..
T Consensus 105 ~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~ 176 (291)
T 1h6t_A 105 LSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 176 (291)
T ss_dssp GGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred Chh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcC
Confidence 765 78999999999999999987 3478899999999999999998 368899999999999999999877 899
Q ss_pred CCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550 302 LGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332 (332)
Q Consensus 302 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l 332 (332)
+++|+.|++++|++++++. +..++.|+.|
T Consensus 177 l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L 205 (291)
T 1h6t_A 177 LTKLQNLYLSKNHISDLRA--LAGLKNLDVL 205 (291)
T ss_dssp CTTCCEEECCSSCCCBCGG--GTTCTTCSEE
T ss_pred CCccCEEECCCCcCCCChh--hccCCCCCEE
Confidence 9999999999999999864 7888887653
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=8.2e-20 Score=176.35 Aligned_cols=170 Identities=23% Similarity=0.309 Sum_probs=146.1
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 215 (332)
.+++.|++++|.++.+|..+ .++|++|++++|.++.++ ..+++|++|++++|+++++++ +.+ +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence 37899999999999998865 379999999999999877 447899999999999999754 655 99999999
Q ss_pred CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295 (332)
Q Consensus 216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 295 (332)
+|.++.+|+ .+++|+.|++++|.++.++. .+++|+.|++++|.++++|. +. ++|+.|++++|.++.++
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCC
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchh
Confidence 999999887 47899999999999999754 57899999999999999887 55 89999999999999777
Q ss_pred chhcCCCCCC-------CEEEccCCCCCCcccccccCCCCcccC
Q psy8550 296 DGAFNGLGRL-------SALDLRGAGLTNMMGHSMALGDYLHWI 332 (332)
Q Consensus 296 ~~~~~~l~~L-------~~L~Ls~n~l~~l~~~~~~~l~~L~~l 332 (332)
+ +.. +| +.|+|++|+|+.+|+..+. +++|+.|
T Consensus 197 ~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L 235 (571)
T 3cvr_A 197 A--VPV--RNHHSEETEIFFRCRENRITHIPENILS-LDPTCTI 235 (571)
T ss_dssp C--CC----------CCEEEECCSSCCCCCCGGGGG-SCTTEEE
T ss_pred h--HHH--hhhcccccceEEecCCCcceecCHHHhc-CCCCCEE
Confidence 6 554 77 9999999999999886665 7777643
No 103
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.83 E-value=7.5e-20 Score=150.64 Aligned_cols=138 Identities=31% Similarity=0.518 Sum_probs=112.9
Q ss_pred CCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCC
Q psy8550 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185 (332)
Q Consensus 107 ~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 185 (332)
||..|.|.. ..+.|.++.+..+|..++++++.|++++|.++.+++ .+..+++|++|++++|.++.+++..|..+++|
T Consensus 1 Cp~~C~C~~--~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (177)
T 2o6r_A 1 CPSRCSCSG--TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78 (177)
T ss_dssp CCTTCEEET--TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcCCCEeCC--CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc
Confidence 899999964 479999999999998888889999999888887776 56788888888888888888877777888888
Q ss_pred cEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCccc
Q psy8550 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246 (332)
Q Consensus 186 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 246 (332)
++|++++|.++++++..|.++++|++|++++|.++.+++..+..+++|+.|++++|.+...
T Consensus 79 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 8888888888887777777788888888888888877777667777788888887776644
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=8e-22 Score=182.43 Aligned_cols=249 Identities=16% Similarity=0.119 Sum_probs=187.6
Q ss_pred hHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecCCCccc--
Q psy8550 52 ILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDV-- 129 (332)
Q Consensus 52 ~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~~~l~~-- 129 (332)
....+..++..+..+.+|+.|.+++|.+.......+.. .. .....++.++..++.+..
T Consensus 17 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-------------~l-------~~~~~L~~L~Ls~~~~~~l~ 76 (386)
T 2ca6_A 17 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE-------------NI-------ASKKDLEIAEFSDIFTGRVK 76 (386)
T ss_dssp CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHH-------------TT-------TTCTTCCEEECCSCCTTSCG
T ss_pred CHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHH-------------HH-------HhCCCccEEeCcccccCccc
Confidence 33566889999999999999999999887654322110 00 112345567777654443
Q ss_pred --cCCCC---------CCCccEEEeecCCCcc-----chhhhcCCCCCcEEEeecCcCcccCCCCCC----CC-------
Q psy8550 130 --IPITL---------NPSIQRLVLKYNRIKT-----VDSAIQFYSSLQHVDLSHNQLVNIPIRGFE----PQ------- 182 (332)
Q Consensus 130 --lp~~~---------~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~----~l------- 182 (332)
+|.++ .++|++|++++|.++. ++..+..+++|++|++++|.+....+..+. .+
T Consensus 77 ~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~ 156 (386)
T 2ca6_A 77 DEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAK 156 (386)
T ss_dssp GGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcc
Confidence 23222 2799999999999986 777899999999999999998754433333 23
Q ss_pred --CCCcEEEcCCCccccc-Cc---cccCCCCCCCEEEccCCCCCC-----CCccccCCCCCCcEeeccCCCCc----ccC
Q psy8550 183 --EKLVELQLNHNKLSSV-NN---KTFIGLKSLKVLNLRGNFLED-----LPDRLFAPLSHLEELDLGQNRIS----RID 247 (332)
Q Consensus 183 --~~L~~L~l~~n~l~~~-~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~ 247 (332)
++|++|++++|+++.. .+ ..+..+++|++|++++|.++. +.+..+..+++|+.|++++|.++ ...
T Consensus 157 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred cCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 8999999999999732 23 456778999999999999872 33324678899999999999995 333
Q ss_pred hhhcCCCCCCcEEeCCCCCCCCcC----cccc--cCCCCccEEEcCCCcCCc----cCchhc-CCCCCCCEEEccCCCCC
Q psy8550 248 QACFEGLTALRILYLDDNQLRSVP----TPSF--IYLGMLAELRVGLNVFTT----LADGAF-NGLGRLSALDLRGAGLT 316 (332)
Q Consensus 248 ~~~~~~l~~L~~L~L~~n~l~~~~----~~~~--~~l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~Ls~n~l~ 316 (332)
+..+..+++|+.|++++|.+++.. +..+ +.+++|+.|++++|.+++ ..+..+ .++++|+.|++++|.++
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 567888999999999999998752 2344 348999999999999998 344455 67899999999999999
Q ss_pred Cccc
Q psy8550 317 NMMG 320 (332)
Q Consensus 317 ~l~~ 320 (332)
+..+
T Consensus 317 ~~~~ 320 (386)
T 2ca6_A 317 EEDD 320 (386)
T ss_dssp TTSH
T ss_pred cchh
Confidence 8774
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=6.9e-20 Score=153.62 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=93.8
Q ss_pred CCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEe
Q psy8550 157 FYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEEL 236 (332)
Q Consensus 157 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 236 (332)
.+++|++|++++|.+..++ .+..+++|++|++++|.++.+ ..+..+++|++|++++|.++...+..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3445555555555555444 345555566666655554443 245566666666666666665333345666677777
Q ss_pred eccCCCCcccChhhcCCCCCCcEEeCCCCC-CCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCC
Q psy8550 237 DLGQNRISRIDQACFEGLTALRILYLDDNQ-LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315 (332)
Q Consensus 237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 315 (332)
++++|.++...+..++.+++|++|++++|. ++.++ .+..+++|+.|++++|++++++ .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 777777666555666677777777777776 66654 4666777777777777777654 466777777777777776
Q ss_pred CC
Q psy8550 316 TN 317 (332)
Q Consensus 316 ~~ 317 (332)
..
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 53
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=1.1e-19 Score=152.43 Aligned_cols=151 Identities=16% Similarity=0.202 Sum_probs=132.8
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 215 (332)
++++.|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 67899999999999988 6899999999999999877664 68889999999999999998778889999999999999
Q ss_pred CCCCCCCCccccCCCCCCcEeeccCCC-CcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy8550 216 GNFLEDLPDRLFAPLSHLEELDLGQNR-ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293 (332)
Q Consensus 216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 293 (332)
+|.++...+..++.+++|++|++++|. ++.++ .+..+++|+.|++++|.+++++ .+..+++|+.|++++|++.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 999998666667999999999999998 87774 4888999999999999999977 58889999999999998864
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=5.8e-20 Score=166.36 Aligned_cols=211 Identities=19% Similarity=0.185 Sum_probs=168.5
Q ss_pred CCceEEecCCCcc--ccCCCCCCCccEEEeecCCCccchh-hhcC--------CCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550 116 ETLVVTCKEANLD--VIPITLNPSIQRLVLKYNRIKTVDS-AIQF--------YSSLQHVDLSHNQLVNIPIRGFEPQEK 184 (332)
Q Consensus 116 ~~~~~~c~~~~l~--~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~--------l~~L~~L~l~~~~l~~~~~~~~~~l~~ 184 (332)
.+..++.+++.+. ..+....+.+..+.+..+ .+|+ .|.+ +++|+++++.+ .++.|...+|.++++
T Consensus 50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN 125 (329)
T ss_dssp TCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred cCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence 3445666666655 333222223333444333 5555 6777 99999999999 899999999999999
Q ss_pred CcEEEcCCCcccccCccccCCCCCCCEEEccCCC----CCCCCcccc---------------------------------
Q psy8550 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF----LEDLPDRLF--------------------------------- 227 (332)
Q Consensus 185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~--------------------------------- 227 (332)
|+.++++.|.+..+.+.+|.++.++..+....+. ...+....|
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 9999999999999999999988777777665521 111111111
Q ss_pred -----------------CCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCcc-EEEcCCC
Q psy8550 228 -----------------APLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA-ELRVGLN 289 (332)
Q Consensus 228 -----------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n 289 (332)
..+++|+.+++++|.++.++..+|.++++|+.+++.+| +..++..+|.++.+|+ .+++.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 02689999999999999999999999999999999998 9999999999999999 999998
Q ss_pred cCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550 290 VFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332 (332)
Q Consensus 290 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l 332 (332)
.++.+.+.+|.++++|+.+++++|+++.+++.+|..+++|+.+
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 8999999999999999999999999999999999999999864
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=6.5e-20 Score=178.64 Aligned_cols=181 Identities=24% Similarity=0.330 Sum_probs=157.4
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccC
Q psy8550 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRG 216 (332)
Q Consensus 137 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 216 (332)
.+..+.+..+.+..+.. +..+.+|+.|++++|.+..++ .+..+++|+.|+|++|.+.++++ +..+++|+.|+|++
T Consensus 22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 44455566666665543 567889999999999999886 58899999999999999999876 88999999999999
Q ss_pred CCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy8550 217 NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 296 (332)
Q Consensus 217 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 296 (332)
|.+..++. +..+++|+.|+|++|.+..++ .+..+++|+.|+|++|.++++ ..++.+++|+.|+|++|.++++++
T Consensus 97 N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKDLSS--LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCCCTT--STTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCChh--hccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 99998874 789999999999999999873 388899999999999999998 368899999999999999999887
Q ss_pred hhcCCCCCCCEEEccCCCCCCcccccccCCCCcccC
Q psy8550 297 GAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332 (332)
Q Consensus 297 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~l 332 (332)
+..+++|+.|+|++|++++++ .+..++.|+.|
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L 202 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVL 202 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEE
T ss_pred --hccCCCCCEEECcCCCCCCCh--HHccCCCCCEE
Confidence 899999999999999999984 57888887653
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=4.1e-19 Score=155.74 Aligned_cols=150 Identities=24% Similarity=0.338 Sum_probs=133.0
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEcc
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 215 (332)
++++.|++++|.++.++ .+..+++|++|++++|.++.+++ +..+++|++|++++|+++++++ +.. ++|++|+++
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLD 114 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECC
T ss_pred CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-CcccEEEcc
Confidence 78999999999999987 68899999999999999999875 8899999999999999999854 333 899999999
Q ss_pred CCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295 (332)
Q Consensus 216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 295 (332)
+|.++.++. +..+++|+.|++++|++++++ .+..+++|+.|++++|.++++ ..+..+++|+.|++++|+++..+
T Consensus 115 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 115 NNELRDTDS--LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp SSCCSBSGG--GTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCccCCChh--hcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 999998854 788999999999999999884 488899999999999999988 46888999999999999998776
Q ss_pred ch
Q psy8550 296 DG 297 (332)
Q Consensus 296 ~~ 297 (332)
..
T Consensus 189 ~~ 190 (263)
T 1xeu_A 189 VK 190 (263)
T ss_dssp EE
T ss_pred cc
Confidence 53
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=3.4e-20 Score=170.07 Aligned_cols=206 Identities=21% Similarity=0.178 Sum_probs=140.3
Q ss_pred CCceEEecCCCccccCC--------CCCCCccEEEeecCCCccc-hhhhcCC-----CCCcEEEeecCcCcccCCCC---
Q psy8550 116 ETLVVTCKEANLDVIPI--------TLNPSIQRLVLKYNRIKTV-DSAIQFY-----SSLQHVDLSHNQLVNIPIRG--- 178 (332)
Q Consensus 116 ~~~~~~c~~~~l~~lp~--------~~~~~L~~L~l~~~~l~~l-~~~~~~l-----~~L~~L~l~~~~l~~~~~~~--- 178 (332)
....++..++.+...+. ..+.++++|++++|.++.. +..+..+ ++|++|++++|.++...+..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 35678888887776663 1223788888888888754 3345443 88888888888887766443
Q ss_pred -CCCC-CCCcEEEcCCCcccccCcccc----CC-CCCCCEEEccCCCCCCCCccc----cCCCC-CCcEeeccCCCCccc
Q psy8550 179 -FEPQ-EKLVELQLNHNKLSSVNNKTF----IG-LKSLKVLNLRGNFLEDLPDRL----FAPLS-HLEELDLGQNRISRI 246 (332)
Q Consensus 179 -~~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~L~~n~l~~~~~~~----~~~l~-~L~~L~L~~n~l~~~ 246 (332)
+..+ ++|++|++++|.++...+..+ .. .++|++|++++|.++...... +...+ +|++|++++|.++..
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 3333 788888888888887765443 33 258888888888887544322 23343 788888888888777
Q ss_pred Chhh----cCCC-CCCcEEeCCCCCCCCcCcc----cccC-CCCccEEEcCCCcCCccCc----hhcCCCCCCCEEEccC
Q psy8550 247 DQAC----FEGL-TALRILYLDDNQLRSVPTP----SFIY-LGMLAELRVGLNVFTTLAD----GAFNGLGRLSALDLRG 312 (332)
Q Consensus 247 ~~~~----~~~l-~~L~~L~L~~n~l~~~~~~----~~~~-l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~ 312 (332)
.+.. +... ++|++|++++|.+++.... .+.. .++|+.|++++|.+++..+ ..+..+++|++|++++
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 6543 3344 4888888888888773221 3333 4588888888888887654 3456678888888888
Q ss_pred CCCCCcccc
Q psy8550 313 AGLTNMMGH 321 (332)
Q Consensus 313 n~l~~l~~~ 321 (332)
|.+..+.+.
T Consensus 263 n~l~~i~~~ 271 (362)
T 3goz_A 263 DIVKNMSKE 271 (362)
T ss_dssp HHHTTCCHH
T ss_pred CCccccCHH
Confidence 886666654
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=7.7e-22 Score=191.03 Aligned_cols=192 Identities=21% Similarity=0.242 Sum_probs=155.0
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEeecCc-------------CcccCCCCCCCCCCCcEEE-cCCCcccccCcc
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQ-------------LVNIPIRGFEPQEKLVELQ-LNHNKLSSVNNK 201 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~ 201 (332)
++++.|++++|.++.+|+.++.+++|++|++++|. ..+..+..++.+++|+.|+ ++.|.+..+...
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 67889999999999999999999999999987664 3444455667777888887 555433222110
Q ss_pred -----ccCC--CCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCccc
Q psy8550 202 -----TFIG--LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPS 274 (332)
Q Consensus 202 -----~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 274 (332)
.+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|.++.+ |..++.+++|+.|++++|.++++| .
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp--~ 503 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD--G 503 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG--G
T ss_pred hhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCCc--c
Confidence 0100 1258999999999999886 78899999999999999977 557899999999999999999976 6
Q ss_pred ccCCCCccEEEcCCCcCCccC-chhcCCCCCCCEEEccCCCCCCccccc---ccCCCCcccC
Q psy8550 275 FIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLSALDLRGAGLTNMMGHS---MALGDYLHWI 332 (332)
Q Consensus 275 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~l~~~~---~~~l~~L~~l 332 (332)
++.+++|+.|++++|++++.+ |..++++++|+.|+|++|.++++++.. +..++.|+.|
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 899999999999999999997 789999999999999999999988743 4446666643
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=1.3e-19 Score=164.20 Aligned_cols=197 Identities=18% Similarity=0.168 Sum_probs=135.1
Q ss_pred CceEEecCCCccccCCCCC--CCccEEEeecCCCcc--chhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCC
Q psy8550 117 TLVVTCKEANLDVIPITLN--PSIQRLVLKYNRIKT--VDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192 (332)
Q Consensus 117 ~~~~~c~~~~l~~lp~~~~--~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 192 (332)
...+.+.++.+...+..+. +++++|++++|.++. ++..+..+++|++|++++|.+....+..++.+++|++|++++
T Consensus 72 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~ 151 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151 (336)
T ss_dssp CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCC
Confidence 4456666666665544433 778888888887763 666778888888888888887755556677788888888888
Q ss_pred C-ccccc-CccccCCCCCCCEEEccCC-CCCCC-CccccCCCC-CCcEeeccCCC--Cc-ccChhhcCCCCCCcEEeCCC
Q psy8550 193 N-KLSSV-NNKTFIGLKSLKVLNLRGN-FLEDL-PDRLFAPLS-HLEELDLGQNR--IS-RIDQACFEGLTALRILYLDD 264 (332)
Q Consensus 193 n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~L~~ 264 (332)
| .+++. .+..+.++++|++|++++| .++.. .+..+..++ +|++|++++|. ++ ...+..+..+++|+.|++++
T Consensus 152 ~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 231 (336)
T 2ast_B 152 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231 (336)
T ss_dssp CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred CCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence 7 56642 3455667788888888888 77642 133346677 88888888883 43 22244556678888888888
Q ss_pred CC-CCCcCcccccCCCCccEEEcCCCc-CCccCchhcCCCCCCCEEEccCC
Q psy8550 265 NQ-LRSVPTPSFIYLGMLAELRVGLNV-FTTLADGAFNGLGRLSALDLRGA 313 (332)
Q Consensus 265 n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 313 (332)
|. +++.....++.+++|+.|++++|. +.......+.++++|+.|++++|
T Consensus 232 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 87 555444467777888888888884 32222225677788888888877
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=9.5e-20 Score=167.13 Aligned_cols=203 Identities=18% Similarity=0.204 Sum_probs=107.0
Q ss_pred CCceEEecCCCccccCC-C-------CCCCccEEEeecCCCccchh-h----hcCC-CCCcEEEeecCcCcccCCCCC--
Q psy8550 116 ETLVVTCKEANLDVIPI-T-------LNPSIQRLVLKYNRIKTVDS-A----IQFY-SSLQHVDLSHNQLVNIPIRGF-- 179 (332)
Q Consensus 116 ~~~~~~c~~~~l~~lp~-~-------~~~~L~~L~l~~~~l~~l~~-~----~~~l-~~L~~L~l~~~~l~~~~~~~~-- 179 (332)
....++..++.+..... . .++++++|++++|.++..+. . +..+ ++|++|++++|.++...+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 34456666665554321 1 12556666666666663332 2 3333 566666666666665543322
Q ss_pred --CC-CCCCcEEEcCCCcccccCc----cccCCCC-CCCEEEccCCCCCCCCcccc----CCC-CCCcEeeccCCCCccc
Q psy8550 180 --EP-QEKLVELQLNHNKLSSVNN----KTFIGLK-SLKVLNLRGNFLEDLPDRLF----APL-SHLEELDLGQNRISRI 246 (332)
Q Consensus 180 --~~-l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~ 246 (332)
.. .++|++|++++|.++.... ..+..++ +|++|++++|.++...+..+ ... ++|++|++++|.++..
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 22 2466666666666664332 2223333 66666666666665554222 223 3666666666666652
Q ss_pred Ch----hhcCC-CCCCcEEeCCCCCCCCcCc----ccccCCCCccEEEcCCCcCCccCc-------hhcCCCCCCCEEEc
Q psy8550 247 DQ----ACFEG-LTALRILYLDDNQLRSVPT----PSFIYLGMLAELRVGLNVFTTLAD-------GAFNGLGRLSALDL 310 (332)
Q Consensus 247 ~~----~~~~~-l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~L 310 (332)
.. ..+.. .++|++|++++|.+++.+. ..+..+++|+.|++++|.+.++.+ ..+..+++|+.||+
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence 21 22322 2466666666666665543 223445666666666666444332 24455566666666
Q ss_pred cCCCCCCc
Q psy8550 311 RGAGLTNM 318 (332)
Q Consensus 311 s~n~l~~l 318 (332)
++|++...
T Consensus 292 ~~N~l~~~ 299 (362)
T 3goz_A 292 NGKEIHPS 299 (362)
T ss_dssp TSCBCCGG
T ss_pred CCCcCCCc
Confidence 66666544
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=5e-20 Score=166.84 Aligned_cols=216 Identities=19% Similarity=0.084 Sum_probs=167.9
Q ss_pred CceEEecCCCcccc--CCCCCCCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCccc-CCCCCCCCCCCcEEEcCCC
Q psy8550 117 TLVVTCKEANLDVI--PITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNI-PIRGFEPQEKLVELQLNHN 193 (332)
Q Consensus 117 ~~~~~c~~~~l~~l--p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~n 193 (332)
+..++..++.+..- .....++++.|++++|.+...++.+..+++|++|++++|.+... .+..+..+++|++|++++|
T Consensus 49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~ 128 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 128 (336)
T ss_dssp SSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred heeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc
Confidence 45677776655410 00112789999999999997777778899999999999998753 3356788999999999999
Q ss_pred cccccCccccCCCCCCCEEEccCC-CCCCC-CccccCCCCCCcEeeccCC-CCccc-ChhhcCCCC-CCcEEeCCCC--C
Q psy8550 194 KLSSVNNKTFIGLKSLKVLNLRGN-FLEDL-PDRLFAPLSHLEELDLGQN-RISRI-DQACFEGLT-ALRILYLDDN--Q 266 (332)
Q Consensus 194 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n--~ 266 (332)
.+++..+..+..+++|++|++++| .++.. .+..+..+++|++|++++| .++.. .+..+..++ +|++|++++| .
T Consensus 129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence 998877888999999999999999 67742 2334577899999999999 88863 255677889 9999999999 4
Q ss_pred CC-CcCcccccCCCCccEEEcCCCc-CCccCchhcCCCCCCCEEEccCCC-CCCcccccccCCCCcccC
Q psy8550 267 LR-SVPTPSFIYLGMLAELRVGLNV-FTTLADGAFNGLGRLSALDLRGAG-LTNMMGHSMALGDYLHWI 332 (332)
Q Consensus 267 l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~l~~L~~l 332 (332)
++ +..+..+..+++|+.|++++|. +++..+..+.++++|+.|++++|. +.......++.+++|+.|
T Consensus 209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 54 2223366789999999999999 776666688999999999999996 333222357777777653
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=6.3e-19 Score=147.20 Aligned_cols=131 Identities=25% Similarity=0.368 Sum_probs=115.4
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCC-CCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC
Q psy8550 139 QRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIR-GFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217 (332)
Q Consensus 139 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 217 (332)
+.++++++.++.+|..+.. ++++|++++|.+..+++. .|..+++|++|++++|+++++.|..|.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6789999999999875543 899999999999988864 4888999999999999999998889999999999999999
Q ss_pred CCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcC
Q psy8550 218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 271 (332)
Q Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 271 (332)
.++.+++..|..+++|++|++++|.++++.+..+..+++|++|++++|.+....
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 999998888888999999999999999888888888999999999999887543
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=5.8e-20 Score=169.89 Aligned_cols=216 Identities=17% Similarity=0.120 Sum_probs=163.1
Q ss_pred CCceEEecCCCcccc-----CCCC--CCCccEEEeecCCCc----cchhh-------hcCCCCCcEEEeecCcCccc---
Q psy8550 116 ETLVVTCKEANLDVI-----PITL--NPSIQRLVLKYNRIK----TVDSA-------IQFYSSLQHVDLSHNQLVNI--- 174 (332)
Q Consensus 116 ~~~~~~c~~~~l~~l-----p~~~--~~~L~~L~l~~~~l~----~l~~~-------~~~l~~L~~L~l~~~~l~~~--- 174 (332)
....++..++.+... +..+ .+++++|++++|.+. .+|.. +..+++|++|++++|.+...
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 355788888776642 2222 378999999997554 34443 47899999999999998872
Q ss_pred -CCCCCCCCCCCcEEEcCCCcccccCccccCC----C---------CCCCEEEccCCCCCC--CCc--cccCCCCCCcEe
Q psy8550 175 -PIRGFEPQEKLVELQLNHNKLSSVNNKTFIG----L---------KSLKVLNLRGNFLED--LPD--RLFAPLSHLEEL 236 (332)
Q Consensus 175 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l---------~~L~~L~L~~n~l~~--~~~--~~~~~l~~L~~L 236 (332)
.+..+..+++|++|++++|.++...+..+.. + ++|++|++++|.++. ++. ..+..+++|++|
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 2356778899999999999997654444433 3 899999999999973 331 245678899999
Q ss_pred eccCCCCcc-----cChhhcCCCCCCcEEeCCCCCCC----CcCcccccCCCCccEEEcCCCcCCcc----Cchhc--CC
Q psy8550 237 DLGQNRISR-----IDQACFEGLTALRILYLDDNQLR----SVPTPSFIYLGMLAELRVGLNVFTTL----ADGAF--NG 301 (332)
Q Consensus 237 ~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~--~~ 301 (332)
++++|.++. +.+..+..+++|+.|++++|.++ ...+..+..+++|+.|++++|.+++. .+.++ +.
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 999999883 33336788999999999999995 22334778899999999999999876 44556 44
Q ss_pred CCCCCEEEccCCCCCC-----cccccccCCCCccc
Q psy8550 302 LGRLSALDLRGAGLTN-----MMGHSMALGDYLHW 331 (332)
Q Consensus 302 l~~L~~L~Ls~n~l~~-----l~~~~~~~l~~L~~ 331 (332)
+++|+.|+|++|.++. ++...+..++.|+.
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 8999999999999998 65555466677664
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=2.9e-18 Score=139.79 Aligned_cols=137 Identities=23% Similarity=0.320 Sum_probs=78.8
Q ss_pred CCCCCccEEEeecCCCc--cchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCC
Q psy8550 133 TLNPSIQRLVLKYNRIK--TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLK 210 (332)
Q Consensus 133 ~~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 210 (332)
..++++++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 33456666666666666 5655556666666666666666655 4555566666666666666654454555556666
Q ss_pred EEEccCCCCCCCCc-cccCCCCCCcEeeccCCCCcccCh---hhcCCCCCCcEEeCCCCCCCCcC
Q psy8550 211 VLNLRGNFLEDLPD-RLFAPLSHLEELDLGQNRISRIDQ---ACFEGLTALRILYLDDNQLRSVP 271 (332)
Q Consensus 211 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~ 271 (332)
+|++++|.++.++. ..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.+..++
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 66666666655542 334555555555555555555544 34555555555555555555444
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=3.6e-18 Score=139.28 Aligned_cols=137 Identities=25% Similarity=0.199 Sum_probs=92.5
Q ss_pred CCCcEEEcCCCccc-ccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEe
Q psy8550 183 EKLVELQLNHNKLS-SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILY 261 (332)
Q Consensus 183 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (332)
++|+.|++++|.++ +..|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++...+..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666655 22244455666666666666666665 3356666777777777776664455555567777777
Q ss_pred CCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCc---hhcCCCCCCCEEEccCCCCCCcccc
Q psy8550 262 LDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLAD---GAFNGLGRLSALDLRGAGLTNMMGH 321 (332)
Q Consensus 262 L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~l~~~ 321 (332)
+++|.+++++. ..++.+++|+.|++++|++++.++ ..+..+++|+.|++++|.+..++..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 77777777653 467777788888888888887776 5778888888888888888777653
No 119
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=2.1e-20 Score=176.47 Aligned_cols=263 Identities=17% Similarity=0.149 Sum_probs=164.8
Q ss_pred hccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCC----------CCcccCCCceEEecCCC
Q psy8550 57 LIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPP----------DCDCNDETLVVTCKEAN 126 (332)
Q Consensus 57 ~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----------~c~c~~~~~~~~c~~~~ 126 (332)
..+|..++.+.+|+.|++++|.+...........+.... .....-....|.- .......++.++..++.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ-CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT-CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC-CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 367888999999999999998876543322111100000 0000000000100 00011344556666665
Q ss_pred ccccCC-CC-------CCCccEEEeecCCCcc-----chhhhcCCCCCcEEEeecCcCcccC-----CCCCCCCCCCcEE
Q psy8550 127 LDVIPI-TL-------NPSIQRLVLKYNRIKT-----VDSAIQFYSSLQHVDLSHNQLVNIP-----IRGFEPQEKLVEL 188 (332)
Q Consensus 127 l~~lp~-~~-------~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~~~l~~~~-----~~~~~~l~~L~~L 188 (332)
+..... .+ .+++++|++++|.++. ++..+..+++|++|++++|.+.... +..+..+++|++|
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence 543211 11 2477888888887775 5666777788888888888776532 2233457788888
Q ss_pred EcCCCccccc----CccccCCCCCCCEEEccCCCCCCCCcccc-----CCCCCCcEeeccCCCCcccC----hhhcCCCC
Q psy8550 189 QLNHNKLSSV----NNKTFIGLKSLKVLNLRGNFLEDLPDRLF-----APLSHLEELDLGQNRISRID----QACFEGLT 255 (332)
Q Consensus 189 ~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~----~~~~~~l~ 255 (332)
++++|.++.. .+..+.++++|++|++++|.++......+ ...++|+.|++++|.++... +..+..++
T Consensus 262 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred ECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC
Confidence 8888887763 24556667888888888887764332222 23367888888888877653 34455678
Q ss_pred CCcEEeCCCCCCCCcCcccccC-----CCCccEEEcCCCcCCc----cCchhcCCCCCCCEEEccCCCCCCccc
Q psy8550 256 ALRILYLDDNQLRSVPTPSFIY-----LGMLAELRVGLNVFTT----LADGAFNGLGRLSALDLRGAGLTNMMG 320 (332)
Q Consensus 256 ~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~l~~ 320 (332)
+|++|++++|.+++.....+.. .++|++|++++|.+++ ..+..+..+++|++|++++|+++....
T Consensus 342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~ 415 (461)
T 1z7x_W 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415 (461)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHH
Confidence 8888899888887654433432 5688999999998885 556677788889999999998876543
No 120
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=8e-20 Score=172.51 Aligned_cols=186 Identities=20% Similarity=0.202 Sum_probs=92.6
Q ss_pred ccEEEeecCCCcc-----chhhhcCCCCCcEEEeecCcCcccCCCCCC-----CCCCCcEEEcCCCcccccC----cccc
Q psy8550 138 IQRLVLKYNRIKT-----VDSAIQFYSSLQHVDLSHNQLVNIPIRGFE-----PQEKLVELQLNHNKLSSVN----NKTF 203 (332)
Q Consensus 138 L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~----~~~~ 203 (332)
+++|++++|.++. ++..+..+++|++|++++|.+.......+. ..++|++|++++|.++... +..+
T Consensus 144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence 4444444444442 223334445555555555544432211111 1335555555555554421 3334
Q ss_pred CCCCCCCEEEccCCCCCCCC-----ccccCCCCCCcEeeccCCCCcccC----hhhcCCCCCCcEEeCCCCCCCCcCccc
Q psy8550 204 IGLKSLKVLNLRGNFLEDLP-----DRLFAPLSHLEELDLGQNRISRID----QACFEGLTALRILYLDDNQLRSVPTPS 274 (332)
Q Consensus 204 ~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~ 274 (332)
..+++|++|++++|.++... +..+..+++|++|++++|.++... +..+..+++|++|++++|.+.+.....
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 44555666666665554321 222234556666666666655421 333444566666666666655433222
Q ss_pred cc-----CCCCccEEEcCCCcCCcc----CchhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550 275 FI-----YLGMLAELRVGLNVFTTL----ADGAFNGLGRLSALDLRGAGLTNMMGHSM 323 (332)
Q Consensus 275 ~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 323 (332)
+. ..++|+.|++++|.+++. .+..+..+++|+.|++++|+++...+..+
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 361 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH
Confidence 22 124666667766666654 23445566777777777777766554433
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=3.3e-17 Score=134.71 Aligned_cols=111 Identities=34% Similarity=0.478 Sum_probs=51.2
Q ss_pred CCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCC
Q psy8550 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD 263 (332)
Q Consensus 184 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (332)
+|+.|++++|+++++++..|.++++|++|++++|.++.+++..|..+++|+.|++++|.++.+++..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 34444444444444433334444444444444444444444434444444444444444444444444444455555555
Q ss_pred CCCCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy8550 264 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294 (332)
Q Consensus 264 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 294 (332)
+|.++++++..+..+++|+.|++++|++.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 5555544444444445555555555555443
No 122
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.74 E-value=2.2e-17 Score=135.61 Aligned_cols=120 Identities=31% Similarity=0.504 Sum_probs=92.7
Q ss_pred CCCCCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCC
Q psy8550 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEP 181 (332)
Q Consensus 103 ~~~~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 181 (332)
....||..|.|.. ..++|.++.+..+|..+++++++|++++|.++.+++ .+.++++|++|++++|+++.+++..|..
T Consensus 2 ~~~~CP~~C~C~~--~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 2 HSAGCPSQCSCDQ--TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp CCCSSCTTSEECS--SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCCCCCEECC--cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 3467999999965 479999999999998888888888888888887644 6777777888888887777777666777
Q ss_pred CCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCc
Q psy8550 182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD 224 (332)
Q Consensus 182 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 224 (332)
+++|++|++++|+++++++..|.++++|++|++++|.+...++
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 7777777777777777766667777777777777777665443
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=3.5e-17 Score=136.66 Aligned_cols=128 Identities=30% Similarity=0.437 Sum_probs=113.3
Q ss_pred cEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCC
Q psy8550 162 QHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241 (332)
Q Consensus 162 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 241 (332)
+.++++++.++.++... .++|++|++++|.++.+ |..|.++++|++|++++|.++.+++..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888999999887532 35899999999999877 478899999999999999999999888899999999999999
Q ss_pred CCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy8550 242 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293 (332)
Q Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 293 (332)
.++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9999988889999999999999999999998888889999999999998864
No 124
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.73 E-value=2.6e-17 Score=134.62 Aligned_cols=115 Identities=30% Similarity=0.507 Sum_probs=89.0
Q ss_pred CCCCCCcccCCCceEEecCCCccccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCC
Q psy8550 106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184 (332)
Q Consensus 106 ~~p~~c~c~~~~~~~~c~~~~l~~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~ 184 (332)
.||..|.|... .++|.++.++.+|..+++++++|++++|.++.+++ .+.++++|++|++++|+++.+++..|..+++
T Consensus 2 ~CP~~C~C~~~--~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 2 ACPSQCSCSGT--TVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp CCC-CCEEETT--EEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCcCcCCcCCC--EEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCC
Confidence 59999999754 79999999999998888888888888888887744 6777777777777777777777777777777
Q ss_pred CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCC
Q psy8550 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222 (332)
Q Consensus 185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 222 (332)
|++|++++|+++++++..|.++++|++|+|++|.+...
T Consensus 80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 77777777777777666677777777777777766544
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=6e-18 Score=153.10 Aligned_cols=193 Identities=21% Similarity=0.333 Sum_probs=157.8
Q ss_pred CCccEEEeecCCCc-cchhhhcC-CCCCcEEEeecCcCc--------------------ccCCCCCCC--------CCCC
Q psy8550 136 PSIQRLVLKYNRIK-TVDSAIQF-YSSLQHVDLSHNQLV--------------------NIPIRGFEP--------QEKL 185 (332)
Q Consensus 136 ~~L~~L~l~~~~l~-~l~~~~~~-l~~L~~L~l~~~~l~--------------------~~~~~~~~~--------l~~L 185 (332)
.+++.|.++++--. .+ ..+.. +++|++|++++|++. .++..+|.+ +++|
T Consensus 25 ~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred CceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 56788888764211 22 13333 788889999888887 677788888 9999
Q ss_pred cEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCC----cccChhhc----------
Q psy8550 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI----SRIDQACF---------- 251 (332)
Q Consensus 186 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~---------- 251 (332)
+.|++.. .++.+.+.+|.++.+|+.+++++|.+..+++.+|..+.++..+....+.. ..+....|
T Consensus 104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i 182 (329)
T 3sb4_A 104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTI 182 (329)
T ss_dssp CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEE
T ss_pred cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeE
Confidence 9999999 89999999999999999999999999999999999888787777655211 11111001
Q ss_pred ----------------------------------------CCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcC
Q psy8550 252 ----------------------------------------EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVF 291 (332)
Q Consensus 252 ----------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 291 (332)
..+++|+.+++++|.++.++...|.++.+|+.+++.+| +
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i 261 (329)
T 3sb4_A 183 QVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L 261 (329)
T ss_dssp EECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred EecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c
Confidence 02689999999999999999999999999999999998 9
Q ss_pred CccCchhcCCCCCCC-EEEccCCCCCCcccccccCCCCcccC
Q psy8550 292 TTLADGAFNGLGRLS-ALDLRGAGLTNMMGHSMALGDYLHWI 332 (332)
Q Consensus 292 ~~~~~~~~~~l~~L~-~L~Ls~n~l~~l~~~~~~~l~~L~~l 332 (332)
+.+.+.+|.++.+|+ .+++.+ +++.|++.+|..+..|+.+
T Consensus 262 ~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 262 KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 999999999999999 999998 9999999999999998753
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=3.9e-18 Score=165.11 Aligned_cols=211 Identities=17% Similarity=0.155 Sum_probs=134.9
Q ss_pred ccCCchhhHhhhhccchhhhhhhhhhhhhcCccccchhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccCCCceEEecC
Q psy8550 45 NFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKE 124 (332)
Q Consensus 45 ~~~~~~~~~~~l~~iP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~c~c~~~~~~~~c~~ 124 (332)
.+..++++...+..+|++++++++|+.|+++++......+ ... ....
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~----------~ll-~~~~---------------------- 396 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII----------LLM-RALD---------------------- 396 (567)
T ss_dssp TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH----------HHH-HHHC----------------------
T ss_pred cceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHH----------HHH-Hhcc----------------------
Confidence 3457777888899999999999999999987764211100 000 0000
Q ss_pred CCccccCCCCC--CCccEEE-eecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCcc
Q psy8550 125 ANLDVIPITLN--PSIQRLV-LKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNK 201 (332)
Q Consensus 125 ~~l~~lp~~~~--~~L~~L~-l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 201 (332)
.....|..+. ++|+.|+ ++.+.+..+ +.+.+.+|.+..+++. .|+.|++++|.++++ |.
T Consensus 397 -~~~~~~~~l~~l~~L~~L~~l~~n~~~~L----------~~l~l~~n~i~~l~~~------~L~~L~Ls~n~l~~l-p~ 458 (567)
T 1dce_A 397 -PLLYEKETLQYFSTLKAVDPMRAAYLDDL----------RSKFLLENSVLKMEYA------DVRVLHLAHKDLTVL-CH 458 (567)
T ss_dssp -TGGGHHHHHHHHHHHHHHCGGGHHHHHHH----------HHHHHHHHHHHHHHHT------TCSEEECTTSCCSSC-CC
T ss_pred -cccCCHHHHHHHHhcccCcchhhcccchh----------hhhhhhcccccccCcc------CceEEEecCCCCCCC-cC
Confidence 0011111111 3344444 333332222 2233344455544421 367777777777776 33
Q ss_pred ccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcC-cccccCCCC
Q psy8550 202 TFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP-TPSFIYLGM 280 (332)
Q Consensus 202 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~ 280 (332)
|+++++|+.|+|++|.++.+|.. ++.+++|+.|++++|.++++ | .++.+++|+.|++++|.+++++ +..++.+++
T Consensus 459 -~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~ 534 (567)
T 1dce_A 459 -LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534 (567)
T ss_dssp -GGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred -ccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence 77777888888888888777664 57788888888888888876 3 5777888888888888888875 557888888
Q ss_pred ccEEEcCCCcCCccCch---hcCCCCCCCEEEc
Q psy8550 281 LAELRVGLNVFTTLADG---AFNGLGRLSALDL 310 (332)
Q Consensus 281 L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L 310 (332)
|+.|++++|++++.++. .+..+++|+.||+
T Consensus 535 L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88888888888877662 2334778888764
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=3.4e-17 Score=130.73 Aligned_cols=128 Identities=23% Similarity=0.216 Sum_probs=91.7
Q ss_pred CCCcEEEcCCCccc-ccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEe
Q psy8550 183 EKLVELQLNHNKLS-SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILY 261 (332)
Q Consensus 183 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (332)
++|+.|++++|.++ +..|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++...+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56667777777666 33355666677777777777777766 3356777777777777777775566666677788888
Q ss_pred CCCCCCCCcC-cccccCCCCccEEEcCCCcCCccCc---hhcCCCCCCCEEEccC
Q psy8550 262 LDDNQLRSVP-TPSFIYLGMLAELRVGLNVFTTLAD---GAFNGLGRLSALDLRG 312 (332)
Q Consensus 262 L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~ 312 (332)
+++|.+++++ +..++.+++|++|++++|++++.++ ..+..+++|+.||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888887764 2467778888888888888887776 5677788888888764
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=4.5e-18 Score=169.38 Aligned_cols=152 Identities=20% Similarity=0.159 Sum_probs=71.5
Q ss_pred hhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCC
Q psy8550 152 DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS 231 (332)
Q Consensus 152 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 231 (332)
+..+..+.+|+.|++++|.+..++.. +..+++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+|.. ++.++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSLPAE-LGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSCCSS-GGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCccChh-hcCCC
Confidence 33455555555555555555555432 23455555555555555543 34455555555555555555555443 35555
Q ss_pred CCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCC-CccEEEcCCCcCCccCchhcCCCCCCCEEEc
Q psy8550 232 HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG-MLAELRVGLNVFTTLADGAFNGLGRLSALDL 310 (332)
Q Consensus 232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 310 (332)
+|++|+|++|.++.++. .|+.+++|+.|+|++|.+++.++..+..+. ....+++++|.+++.+|. .|+.|++
T Consensus 294 ~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l 366 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEI 366 (727)
T ss_dssp TCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C------
T ss_pred CCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEe
Confidence 55555555555555532 255555555555555555555444443221 112245555555554442 3445555
Q ss_pred cCC
Q psy8550 311 RGA 313 (332)
Q Consensus 311 s~n 313 (332)
++|
T Consensus 367 ~~n 369 (727)
T 4b8c_D 367 NTD 369 (727)
T ss_dssp ---
T ss_pred ecc
Confidence 555
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=5.4e-18 Score=168.81 Aligned_cols=142 Identities=23% Similarity=0.234 Sum_probs=64.6
Q ss_pred CCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCC
Q psy8550 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA 256 (332)
Q Consensus 177 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (332)
..|..++.|+.|+|++|.+..+++ .+.++++|++|+|++|.++.+|+. ++.+++|+.|+|++|.++.+ |..|+.+++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~ 294 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISA-NIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHNRLTSL-PAELGSCFQ 294 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCG-GGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTSCCSSC-CSSGGGGTT
T ss_pred hhhccCCCCcEEECCCCCCCCCCh-hhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCCcCCcc-ChhhcCCCC
Confidence 444445555555555555544422 222445555555555555544433 34455555555555555544 333444555
Q ss_pred CcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCC-CCEEEccCCCCCCccccc
Q psy8550 257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR-LSALDLRGAGLTNMMGHS 322 (332)
Q Consensus 257 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~l~~~~ 322 (332)
|++|+|++|.++.+|. .|+.+++|+.|+|++|.+++.+|..+..+.. ...+++++|.+++..|..
T Consensus 295 L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp CSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 5555555555554443 2445555555555555555544444332211 112445555554444443
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=1.2e-15 Score=141.49 Aligned_cols=201 Identities=15% Similarity=0.222 Sum_probs=150.8
Q ss_pred eEEecCCCccccCCCCC---CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcc
Q psy8550 119 VVTCKEANLDVIPITLN---PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195 (332)
Q Consensus 119 ~~~c~~~~l~~lp~~~~---~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l 195 (332)
.+.... .++.++.... .+|+.+++.+|.++.++.......+|+.+.+.. .+..+...+|.++++|+.+++.. .+
T Consensus 161 ~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~-~l 237 (401)
T 4fdw_A 161 EIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE-NV 237 (401)
T ss_dssp EEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT-TC
T ss_pred EEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC-Cc
Confidence 344433 4444444332 567777777777777766333356777777763 36777777777777777777765 36
Q ss_pred cccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCc-----ccChhhcCCCCCCcEEeCCCCCCCCc
Q psy8550 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS-----RIDQACFEGLTALRILYLDDNQLRSV 270 (332)
Q Consensus 196 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~ 270 (332)
+.+...+|.+ .+|+.+.+ .+.++.++..+|.++.+|+.+++.+|.+. .+...+|.++++|+.+.+. +.+..+
T Consensus 238 ~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I 314 (401)
T 4fdw_A 238 STIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRIL 314 (401)
T ss_dssp CEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEE
T ss_pred cCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEE
Confidence 6677777777 67888877 35677888888888899999998887665 6778888899999999998 458888
Q ss_pred CcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCC
Q psy8550 271 PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGD 327 (332)
Q Consensus 271 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~ 327 (332)
...+|.++.+|+.+.+..| ++.+...+|.++ +|+.+++++|.+..+++..|..++
T Consensus 315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 8888989999999999554 888888889998 899999999999888888888774
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=2.2e-15 Score=139.78 Aligned_cols=205 Identities=16% Similarity=0.229 Sum_probs=155.5
Q ss_pred CceEEecCCCccccCCCCC--CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC
Q psy8550 117 TLVVTCKEANLDVIPITLN--PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193 (332)
Q Consensus 117 ~~~~~c~~~~l~~lp~~~~--~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n 193 (332)
+..+....+ ++.++.... .+|+.+.+.+ .++.++. +|.++.+|+.+++.+|.++.++..+|. ..+|+.+.+..
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~- 212 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV- 212 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-
T ss_pred ccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-
Confidence 334554433 556655332 5678888775 6777766 788888888888888888888877777 47888888874
Q ss_pred cccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCC-----
Q psy8550 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR----- 268 (332)
Q Consensus 194 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----- 268 (332)
.++.+...+|.++.+|+.+++.. .++.++..+|.+ .+|+.+.+ .+.++.+...+|.++++|+.+.+.+|.+.
T Consensus 213 ~l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 213 TLKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp TCCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred chheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence 47778788888888888888876 467777777777 67888888 45577787888888888888888777665
Q ss_pred CcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 269 SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 269 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
.++...|.++++|+.+.+. +.++.+...+|.++.+|+.+++.. +++.|+..+|..+ .|+.
T Consensus 290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKE 349 (401)
T ss_dssp EECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCE
T ss_pred EECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCE
Confidence 5777788888888888888 458888888888888888888854 4888888888887 7764
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=5.1e-17 Score=129.70 Aligned_cols=126 Identities=21% Similarity=0.196 Sum_probs=80.9
Q ss_pred CCCcEEEeecCcCc--ccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEe
Q psy8550 159 SSLQHVDLSHNQLV--NIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEEL 236 (332)
Q Consensus 159 ~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 236 (332)
+++++|++++|.+. .++ ..+..+++|++|++++|.++++ ..+..+++|++|++++|.++...+..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45666666666665 333 4556666666666666666665 456666667777777776666444444556677777
Q ss_pred eccCCCCcccC-hhhcCCCCCCcEEeCCCCCCCCcCc---ccccCCCCccEEEcC
Q psy8550 237 DLGQNRISRID-QACFEGLTALRILYLDDNQLRSVPT---PSFIYLGMLAELRVG 287 (332)
Q Consensus 237 ~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~ 287 (332)
++++|.+++++ +..+..+++|++|++++|.++++++ ..++.+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777766652 2556667777777777777776665 456667777777665
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=1.1e-16 Score=131.46 Aligned_cols=132 Identities=22% Similarity=0.242 Sum_probs=65.9
Q ss_pred CCCCCcEEEcCCCcccccCccccCCCC-CCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcE
Q psy8550 181 PQEKLVELQLNHNKLSSVNNKTFIGLK-SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRI 259 (332)
Q Consensus 181 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (332)
.+.+|+.|++++|+++.+ +. +..+. +|++|++++|.++.+ ..++.+++|++|++++|.++.+++..+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 344444444444444443 21 22222 455555555555444 12444555555555555555554443445555555
Q ss_pred EeCCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCch---hcCCCCCCCEEEccCCCCC
Q psy8550 260 LYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLADG---AFNGLGRLSALDLRGAGLT 316 (332)
Q Consensus 260 L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~ 316 (332)
|++++|.+..++. ..++.+++|+.|++++|+++..++. .+..+++|+.||+++|.+.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5555555555443 2445555566666666655554432 3555666666666666543
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.65 E-value=1.7e-16 Score=130.41 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=92.0
Q ss_pred hcCCCCCcEEEeecCcCcccCCCCCCCC-CCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCC
Q psy8550 155 IQFYSSLQHVDLSHNQLVNIPIRGFEPQ-EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHL 233 (332)
Q Consensus 155 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 233 (332)
+....+|++|++++|.++.++ . +..+ ++|++|++++|.++++ ..|.++++|++|++++|.++.+++..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~-~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIE-N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCC-C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhH-H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445566777777777766653 2 3333 3777777777777766 356677777777777777777766655667777
Q ss_pred cEeeccCCCCcccCh-hhcCCCCCCcEEeCCCCCCCCcCcc---cccCCCCccEEEcCCCcCCc
Q psy8550 234 EELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVPTP---SFIYLGMLAELRVGLNVFTT 293 (332)
Q Consensus 234 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~ 293 (332)
+.|++++|.+..+++ ..+..+++|+.|++++|.++.++.. .++.+++|+.|++++|....
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 777777777766643 3566777777777777777766653 46677788888888776654
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=3.3e-15 Score=122.04 Aligned_cols=107 Identities=29% Similarity=0.395 Sum_probs=61.9
Q ss_pred CcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCC
Q psy8550 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDD 264 (332)
Q Consensus 185 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (332)
.+.+++++|.++.++. .+ ..+|++|++++|.++.+++..|..+++|++|++++|+++.+++..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3456666666665532 22 14556666666666666555555566666666666666665555555566666666666
Q ss_pred CCCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy8550 265 NQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294 (332)
Q Consensus 265 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 294 (332)
|+++++++..|..+++|+.|++++|+++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 666665555555556666666666655543
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.61 E-value=5.8e-15 Score=121.06 Aligned_cols=106 Identities=26% Similarity=0.354 Sum_probs=58.4
Q ss_pred cEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCC
Q psy8550 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265 (332)
Q Consensus 186 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 265 (332)
+.+++++|.++.++. .+. ++|++|++++|.++.+++..|..+++|+.|++++|+++.+++..|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP~-~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCS-CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCC-CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 455555555555532 222 45555555555555555555555555555555555555555554555555555555555
Q ss_pred CCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy8550 266 QLRSVPTPSFIYLGMLAELRVGLNVFTTL 294 (332)
Q Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 294 (332)
+++++++..|+.+++|+.|++++|++...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 55555554455555555555555555543
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=7.2e-18 Score=141.36 Aligned_cols=131 Identities=24% Similarity=0.370 Sum_probs=69.1
Q ss_pred CCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCc
Q psy8550 179 FEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALR 258 (332)
Q Consensus 179 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (332)
+..+++|++|++++|.++++ | .+.++++|++|++++|.++.+|.. +..+++|+.|++++|.++.++ .+..+++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~ 118 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLS--GIEKLVNLR 118 (198)
T ss_dssp HHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEEECCCHH--HHHHHHHSS
T ss_pred HhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCCcCCcCC--ccccCCCCC
Confidence 44444444444444444443 2 444455555555555555544432 233455555555555555542 244555666
Q ss_pred EEeCCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCch----------hcCCCCCCCEEEccCCCCC
Q psy8550 259 ILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLADG----------AFNGLGRLSALDLRGAGLT 316 (332)
Q Consensus 259 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~Ls~n~l~ 316 (332)
.|++++|.+++++. ..+..+++|+.|++++|++++.+|. .+..+++|+.|| +|.++
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 66666666655443 3455566666666666666554432 256666777666 44444
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.53 E-value=3.7e-14 Score=128.89 Aligned_cols=111 Identities=24% Similarity=0.406 Sum_probs=92.5
Q ss_pred CCCCC-cccCCCceEEecCC-CccccCCCCC--CCccEEEeec-CCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCC
Q psy8550 107 CPPDC-DCNDETLVVTCKEA-NLDVIPITLN--PSIQRLVLKY-NRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFE 180 (332)
Q Consensus 107 ~p~~c-~c~~~~~~~~c~~~-~l~~lp~~~~--~~L~~L~l~~-~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~ 180 (332)
||..| .|... .++|.+. .++.+|. ++ ++|+.|+|++ |.++.+++ .|.++++|++|+|++|+|+++++..|.
T Consensus 1 cp~~c~~C~~~--~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 77 (347)
T 2ifg_A 1 CPDACCPHGSS--GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77 (347)
T ss_dssp CCSSSCCSSSS--CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred CCCcCccccCC--EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc
Confidence 89999 99654 5899988 8999998 76 4688889986 88888775 788888888888888888888888888
Q ss_pred CCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCC
Q psy8550 181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED 221 (332)
Q Consensus 181 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 221 (332)
.+++|+.|+|++|+++++++..|..+. |+.|+|.+|.+..
T Consensus 78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 78 FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888888888888888888777776665 8888888888763
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=9.2e-18 Score=140.70 Aligned_cols=126 Identities=26% Similarity=0.262 Sum_probs=108.9
Q ss_pred cccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCC
Q psy8550 201 KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM 280 (332)
Q Consensus 201 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 280 (332)
..|..+++|++|++++|.++.+| .+..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+++++ .++.+++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~ 116 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASLS--GIEKLVN 116 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCS-SHHHHHHHCSEEEEEEEECCCHH--HHHHHHH
T ss_pred HHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccccc-chhhcCCcCCEEECcCCcCCcCC--ccccCCC
Confidence 37888999999999999999987 4688999999999999999874 45666789999999999999976 5888999
Q ss_pred ccEEEcCCCcCCccCc-hhcCCCCCCCEEEccCCCCCCcccc----------cccCCCCccc
Q psy8550 281 LAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNMMGH----------SMALGDYLHW 331 (332)
Q Consensus 281 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~----------~~~~l~~L~~ 331 (332)
|+.|++++|+++++++ ..+..+++|++|++++|.+++..+. .+..++.|+.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 9999999999998765 6789999999999999999776554 3677777764
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=7.4e-16 Score=149.81 Aligned_cols=142 Identities=15% Similarity=0.075 Sum_probs=92.2
Q ss_pred CCCCcEEEcCCCcccccCccccCC-CCCCCEEEcc----CCCCCCCCcc-----ccCCCCCCcEeeccCCC--CcccChh
Q psy8550 182 QEKLVELQLNHNKLSSVNNKTFIG-LKSLKVLNLR----GNFLEDLPDR-----LFAPLSHLEELDLGQNR--ISRIDQA 249 (332)
Q Consensus 182 l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~~~~-----~~~~l~~L~~L~L~~n~--l~~~~~~ 249 (332)
+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.++..|.. .+..+++|+.|+++.|. ++.....
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 556666666656665544444443 6677777775 5566654321 23457788888886432 4433232
Q ss_pred hc-CCCCCCcEEeCCCCCCCCcC-cccccCCCCccEEEcCCCcCCcc-CchhcCCCCCCCEEEccCCCCCCcccccc
Q psy8550 250 CF-EGLTALRILYLDDNQLRSVP-TPSFIYLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLRGAGLTNMMGHSM 323 (332)
Q Consensus 250 ~~-~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 323 (332)
.+ ..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|+++......+
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 23 34788999999999887532 22446788999999999998754 33345678899999999999876644433
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.45 E-value=4.6e-13 Score=121.63 Aligned_cols=107 Identities=22% Similarity=0.239 Sum_probs=87.3
Q ss_pred cEEEcCCC-cccccCccccCCCCCCCEEEccC-CCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCC
Q psy8550 186 VELQLNHN-KLSSVNNKTFIGLKSLKVLNLRG-NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLD 263 (332)
Q Consensus 186 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (332)
..++++++ +++.++ . +..+.+|++|+|++ |.++.+++..|+.+++|+.|+|++|.++++++..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677777 788874 4 88888888888886 88888888888888888888888888888888888888888888888
Q ss_pred CCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy8550 264 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 295 (332)
Q Consensus 264 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 295 (332)
+|+++++++..+..++ |+.|++.+|++....
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence 8888888887776665 888888888887543
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.41 E-value=3.4e-14 Score=138.11 Aligned_cols=174 Identities=14% Similarity=0.007 Sum_probs=87.6
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEeecCcCc---ccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEE
Q psy8550 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLV---NIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVL 212 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 212 (332)
++++.|++++|.+..++..+..+++|++|++++.... ......+..+++|+.|+++++....+ |..+..+++|++|
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGGGGGGCCEE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHhhcCCCcEE
Confidence 5666666666666666666666666666666542211 01113345556666666655433333 4455566677777
Q ss_pred EccCCCCCCCCc-cccCCCCCCcEeeccCCCCccc-ChhhcCCCCCCcEEeCCC-----------CCCCCcCcc-cccCC
Q psy8550 213 NLRGNFLEDLPD-RLFAPLSHLEELDLGQNRISRI-DQACFEGLTALRILYLDD-----------NQLRSVPTP-SFIYL 278 (332)
Q Consensus 213 ~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~-----------n~l~~~~~~-~~~~l 278 (332)
++++|.++.... ..+..+++|+.|++++ .+... .+.....+++|++|++++ |.+++.... ....+
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 777776542221 2235566666666662 22211 112223455566666662 333322111 12235
Q ss_pred CCccEEEcCCCcCCccCchhcCC-CCCCCEEEcc
Q psy8550 279 GMLAELRVGLNVFTTLADGAFNG-LGRLSALDLR 311 (332)
Q Consensus 279 ~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls 311 (332)
++|++|+++.|.+++.....+.. +++|+.|+++
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 55666666555555444333333 5555555554
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=8.7e-15 Score=134.45 Aligned_cols=168 Identities=18% Similarity=0.119 Sum_probs=115.0
Q ss_pred CCCCCccEEEeecCCCccchh-----hhcC-CCCCcEEEeecCcCcccCCCCC-CCCCCCcEEEcCCCcccccCcccc--
Q psy8550 133 TLNPSIQRLVLKYNRIKTVDS-----AIQF-YSSLQHVDLSHNQLVNIPIRGF-EPQEKLVELQLNHNKLSSVNNKTF-- 203 (332)
Q Consensus 133 ~~~~~L~~L~l~~~~l~~l~~-----~~~~-l~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~-- 203 (332)
.+.+.++.|++++|.++.... .+.. ..+|++|++++|.+.......+ ..+++|+.|++++|.++......+
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 344788999999999885332 2332 3689999999998865332222 245688999999998876544443
Q ss_pred ---CCCCCCCEEEccCCCCCCCCc----cccCCCCCCcEeeccCCCCcccC----hhhcCCCCCCcEEeCCCCCCCCcCc
Q psy8550 204 ---IGLKSLKVLNLRGNFLEDLPD----RLFAPLSHLEELDLGQNRISRID----QACFEGLTALRILYLDDNQLRSVPT 272 (332)
Q Consensus 204 ---~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~ 272 (332)
...++|++|+|++|.++.... ..+...++|++|++++|.++... ...+...++|++|++++|.+++...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 345788999999988865322 12356778888899888887543 3445666788888888888876433
Q ss_pred c----cccCCCCccEEEcCCCcCCccCchhcC
Q psy8550 273 P----SFIYLGMLAELRVGLNVFTTLADGAFN 300 (332)
Q Consensus 273 ~----~~~~l~~L~~L~L~~n~l~~~~~~~~~ 300 (332)
. .+...++|++|++++|.++......+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 2 334557888888888888765544443
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.32 E-value=2.7e-14 Score=138.83 Aligned_cols=134 Identities=12% Similarity=0.049 Sum_probs=82.2
Q ss_pred CCCCcEEEcCCCcccccCccccC-CCCCCCEEEcc--C----CCCCCCCcc-----ccCCCCCCcEeeccCCCCcccChh
Q psy8550 182 QEKLVELQLNHNKLSSVNNKTFI-GLKSLKVLNLR--G----NFLEDLPDR-----LFAPLSHLEELDLGQNRISRIDQA 249 (332)
Q Consensus 182 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~ 249 (332)
+++|++|.+.+|.++......+. .+++|+.|+++ + +.++..|.. .+..+++|+.|++++ .++.....
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 45666666655655544333333 36677777777 3 445543321 134567777888766 45443333
Q ss_pred hcCC-CCCCcEEeCCCCCCCCcCcccc-cCCCCccEEEcCCCcCCccCch-hcCCCCCCCEEEccCCCCC
Q psy8550 250 CFEG-LTALRILYLDDNQLRSVPTPSF-IYLGMLAELRVGLNVFTTLADG-AFNGLGRLSALDLRGAGLT 316 (332)
Q Consensus 250 ~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~ 316 (332)
.+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++.... ....+++|+.|++++|+++
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 3433 6778888888888765433333 4578888888888888644332 3445778888888888773
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=2.8e-14 Score=131.10 Aligned_cols=87 Identities=23% Similarity=0.229 Sum_probs=35.6
Q ss_pred CCCcEEEcCCCcccccC----ccccCCCCCCCEEEccCCCCCCCC----ccccCCCCCCcEeeccCCCCcccCh----hh
Q psy8550 183 EKLVELQLNHNKLSSVN----NKTFIGLKSLKVLNLRGNFLEDLP----DRLFAPLSHLEELDLGQNRISRIDQ----AC 250 (332)
Q Consensus 183 ~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~ 250 (332)
++|++|++++|.++... +..+...++|++|+|++|.++... ...+...++|++|++++|.++.... ..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 44555555555443321 112233444555555555444221 1112333445555555554443211 11
Q ss_pred cCCCCCCcEEeCCCCCCCC
Q psy8550 251 FEGLTALRILYLDDNQLRS 269 (332)
Q Consensus 251 ~~~l~~L~~L~L~~n~l~~ 269 (332)
+...++|++|++++|.+++
T Consensus 235 L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHCSSCCEEECTTSSCCH
T ss_pred HHhCCCCCEEeccCCCCCH
Confidence 2223445555555554443
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.24 E-value=1.2e-12 Score=127.08 Aligned_cols=56 Identities=16% Similarity=0.013 Sum_probs=23.9
Q ss_pred CCCCcEEeCCCCCCCCcCc-ccccCCCCccEEEcCCCcCCcc-CchhcCCCCCCCEEEc
Q psy8550 254 LTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDL 310 (332)
Q Consensus 254 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L 310 (332)
+++|++|++++|.+++... ..+..+++|+.|++++| ++.. .+.....+++|+.|++
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 3455555555555432111 11234455555555555 2211 1111223555566655
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.14 E-value=1.9e-09 Score=99.56 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=78.4
Q ss_pred cccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCC
Q psy8550 225 RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR 304 (332)
Q Consensus 225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 304 (332)
.+|..+.+|+.+.+..+ +..+...+|.+++.|+.+.+. +.++.++...|.++.+|+.+.+..+ ++.+...+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 34556666777776543 345666667777788887775 5677788888888889999998754 77788888999999
Q ss_pred CCEEEccCCCCCCcccccccCCCCccc
Q psy8550 305 LSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 305 L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
|+.+.+.. .++.|...+|..|.+|+.
T Consensus 336 L~~i~ip~-sv~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 336 LERIAIPS-SVTKIPESAFSNCTALNN 361 (394)
T ss_dssp CCEEEECT-TCCBCCGGGGTTCTTCCE
T ss_pred CCEEEECc-ccCEEhHhHhhCCCCCCE
Confidence 99999964 488899999998888864
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.06 E-value=1.5e-09 Score=100.31 Aligned_cols=189 Identities=20% Similarity=0.291 Sum_probs=97.3
Q ss_pred CCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCC---------------------
Q psy8550 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN--------------------- 193 (332)
Q Consensus 136 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n--------------------- 193 (332)
.+|+.+.+.++ +..++. .|.++.+|+.+++..+ +..+...+|.++..|+.+.+..+
T Consensus 162 ~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~ 239 (394)
T 4fs7_A 162 ESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPD 239 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECT
T ss_pred CCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECC
Confidence 45666666543 334444 5555666666665543 44444445555444444443322
Q ss_pred cccccCccccCCCCCCCEEEccCCCC--------------------CCCCccccCCCCCCcEeeccCCCCcccChhhcCC
Q psy8550 194 KLSSVNNKTFIGLKSLKVLNLRGNFL--------------------EDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253 (332)
Q Consensus 194 ~l~~~~~~~~~~l~~L~~L~L~~n~l--------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (332)
.++.+...+|.++.+++.+.+..+.. ..++...|..+.+|+.+.+.++ ++.+...+|.+
T Consensus 240 ~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~ 318 (394)
T 4fs7_A 240 SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFES 318 (394)
T ss_dssp TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTT
T ss_pred CceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcC
Confidence 12222233444455555555543311 0123333445555555555443 55555556666
Q ss_pred CCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 254 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
+.+|+.+++.. .++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++.+ ..+|..+.+|++
T Consensus 319 c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~~c~~L~~ 392 (394)
T 4fs7_A 319 CTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQY-RYDFEDTTKFKW 392 (394)
T ss_dssp CTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGG-GGGBCTTCEEEE
T ss_pred CCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEh-hheecCCCCCcE
Confidence 66666666643 355566666666666666666554 55555666666666666666543 3333 345666666554
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.03 E-value=1.7e-09 Score=99.83 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=87.0
Q ss_pred ccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCC
Q psy8550 200 NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG 279 (332)
Q Consensus 200 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 279 (332)
..+|..+.+|+.+.+.. .++.+.+.+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++.
T Consensus 290 ~~~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTTTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred ccccccccccccccccc-ccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 45677788889888875 488888899999999999999754 88899999999999999999876 8899999999999
Q ss_pred CccEEEcCCCcCCccCchhcCCCCCCCEE
Q psy8550 280 MLAELRVGLNVFTTLADGAFNGLGRLSAL 308 (332)
Q Consensus 280 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 308 (332)
+|+.+++..+ ++.. ..+|.++++|+.+
T Consensus 367 ~L~~i~lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred CCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence 9999999755 3333 4578888887754
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.02 E-value=5.4e-09 Score=96.49 Aligned_cols=207 Identities=21% Similarity=0.352 Sum_probs=143.0
Q ss_pred CceEEecCCCccccCCCCC---CCccEEEeecCC---Cccchh-hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEE
Q psy8550 117 TLVVTCKEANLDVIPITLN---PSIQRLVLKYNR---IKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQ 189 (332)
Q Consensus 117 ~~~~~c~~~~l~~lp~~~~---~~L~~L~l~~~~---l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 189 (332)
+..+...+ .++.+...-. .+|+.+.+..+. ++.++. +|.++.+|+.+.+.. .++.+...+|..+.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehhhhhhhhccccccc
Confidence 44455543 3555554332 678888887653 667766 777888888777654 36777778888889999999
Q ss_pred cCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccC-----------------------------
Q psy8550 190 LNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ----------------------------- 240 (332)
Q Consensus 190 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----------------------------- 240 (332)
+.. .+..+...+|..+.+|+.+.+..+ ++.+...+|.. .+|+.+.+..
T Consensus 144 lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~ 220 (394)
T 4gt6_A 144 IPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAI 220 (394)
T ss_dssp CCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBS
T ss_pred ccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhccccceecccccccccc
Confidence 864 456666778888888888887643 33333333322 2233333221
Q ss_pred ------------------------------CCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCc
Q psy8550 241 ------------------------------NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV 290 (332)
Q Consensus 241 ------------------------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 290 (332)
+.++.+...+|.++..|+.+.+..+ +..+....|..+++|+.+.+. +.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~ 298 (394)
T 4gt6_A 221 DNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SR 298 (394)
T ss_dssp SSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TT
T ss_pred cceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-Cc
Confidence 1122334455677777888777543 445667788888889999885 66
Q ss_pred CCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCccc
Q psy8550 291 FTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHW 331 (332)
Q Consensus 291 l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~ 331 (332)
++.+...+|.++.+|+.+++.+ .++.|...+|..|.+|+.
T Consensus 299 i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 299 ITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLER 338 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCE
T ss_pred ccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCE
Confidence 8888889999999999999985 499999999999998875
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.95 E-value=1e-08 Score=94.00 Aligned_cols=153 Identities=14% Similarity=0.268 Sum_probs=119.7
Q ss_pred ccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccCCCCcccChhhcC
Q psy8550 173 NIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252 (332)
Q Consensus 173 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 252 (332)
.+....+....+|+.+.+.. .+..+...+|.++.+|+.+.+..+ ++.+...+|..+.+|+.+.+.. .++.+....|.
T Consensus 207 ~i~~~~f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~ 283 (379)
T 4h09_A 207 TVTAYGFSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCS 283 (379)
T ss_dssp EECTTTTTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTT
T ss_pred EEeecccccccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccc
Confidence 34445666777888888764 356666777888888888888764 7777777788888888888865 47777777888
Q ss_pred CCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCCCCCCcccccccCCCCcc
Q psy8550 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLH 330 (332)
Q Consensus 253 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~ 330 (332)
++.+|+.+.+.++.++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++.|...+|..+..++
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence 8888998888888888888888888888998888644 77787888888888988888654 8888888888776543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.92 E-value=1.5e-08 Score=92.78 Aligned_cols=168 Identities=16% Similarity=0.238 Sum_probs=133.4
Q ss_pred hhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCC
Q psy8550 154 AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHL 233 (332)
Q Consensus 154 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 233 (332)
.+....+++.+.+..+ +..+...+|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+.. .++.++..+|..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccc
Confidence 5566778888887654 67777789999999999999875 7888888999999999999964 5888888889999999
Q ss_pred cEeeccCCCCcccChhhcCCCCCCcEEeCCCCCCCCcCcccccCCCCccEEEcCCCcCCccCchhcCCCCCCCEEEccCC
Q psy8550 234 EELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 313 (332)
Q Consensus 234 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 313 (332)
+.+.+.++.++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++..++ +. .
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~-~~---~ 362 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK-YP---T 362 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC-CC---T
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc-Cc---c
Confidence 99999999999999999999999999999754 88899999999999999999754 8888888898875443 22 2
Q ss_pred CCCCcccccccCCCCcc
Q psy8550 314 GLTNMMGHSMALGDYLH 330 (332)
Q Consensus 314 ~l~~l~~~~~~~l~~L~ 330 (332)
.+..+...+|+.+.+||
T Consensus 363 ~~~~~~~~~f~~~~~Lk 379 (379)
T 4h09_A 363 WLSKGNNGDYGIFTKIK 379 (379)
T ss_dssp TCEECTTSCEEC-----
T ss_pred ccccCceeehhhhhhcC
Confidence 23344445566666654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=7e-10 Score=101.15 Aligned_cols=174 Identities=11% Similarity=0.103 Sum_probs=108.6
Q ss_pred CCccEEEeecCCC----------ccchhhhcCCCCCcEEEeecCcCcccCCCCCCCCCCCcEEEcCCCcccccCccccC-
Q psy8550 136 PSIQRLVLKYNRI----------KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFI- 204 (332)
Q Consensus 136 ~~L~~L~l~~~~l----------~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~- 204 (332)
++|+.|.+.+... ..+...+..+++|+.|++++|.-..+++ +. +++|+.|++..|.+.......+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHHHHH
Confidence 6888888865432 1355667788899999998874223332 33 78899999988776543222332
Q ss_pred -CCCCCCEEEccCC--C------CCCCCcccc-CCCCCCcEeeccCCCCcccChhhc---CCCCCCcEEeCCCCCCCCcC
Q psy8550 205 -GLKSLKVLNLRGN--F------LEDLPDRLF-APLSHLEELDLGQNRISRIDQACF---EGLTALRILYLDDNQLRSVP 271 (332)
Q Consensus 205 -~l~~L~~L~L~~n--~------l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~ 271 (332)
.+++|+.|+|+.+ . +..+.+... ..+++|+.|++.+|.+.......+ ..+++|++|+|+.|.+.+..
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G 295 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence 6788998888531 1 111111111 246788888888887764322222 24678888888888887632
Q ss_pred cc----cccCCCCccEEEcCCCcCCccCchhcCC-CCCCCEEEccCCC
Q psy8550 272 TP----SFIYLGMLAELRVGLNVFTTLADGAFNG-LGRLSALDLRGAG 314 (332)
Q Consensus 272 ~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~ 314 (332)
.. .+..+++|+.|++++|.++......+.. + ...++++++.
T Consensus 296 ~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 21 2245678888888888877544333433 2 3567888776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=4.8e-09 Score=95.60 Aligned_cols=168 Identities=16% Similarity=0.146 Sum_probs=109.7
Q ss_pred cchhhhcCCCCCcEEEeecCcCc-----ccC----CCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCC
Q psy8550 150 TVDSAIQFYSSLQHVDLSHNQLV-----NIP----IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220 (332)
Q Consensus 150 ~l~~~~~~l~~L~~L~l~~~~l~-----~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 220 (332)
.+..++..+++|+.|.+.+.... .+. ...+..+++|+.|.+++|.-..+.+ +. +++|+.|++..+.+.
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLP 206 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCC
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCC
Confidence 34445677889999998765322 111 1233567899999998873223322 33 789999999988875
Q ss_pred CCCcccc--CCCCCCcEeeccC--CC------CcccChhhc--CCCCCCcEEeCCCCCCCCcCcccc---cCCCCccEEE
Q psy8550 221 DLPDRLF--APLSHLEELDLGQ--NR------ISRIDQACF--EGLTALRILYLDDNQLRSVPTPSF---IYLGMLAELR 285 (332)
Q Consensus 221 ~~~~~~~--~~l~~L~~L~L~~--n~------l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~ 285 (332)
.-.-..+ ..+++|+.|+|+. +. +..+.+ .+ ..+++|++|++.+|.+.+.....+ ..+++|++|+
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~Ld 285 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEE
T ss_pred hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEE
Confidence 3222222 3688999999853 11 222211 22 247899999999998874322122 2468999999
Q ss_pred cCCCcCCccC----chhcCCCCCCCEEEccCCCCCCcccc
Q psy8550 286 VGLNVFTTLA----DGAFNGLGRLSALDLRGAGLTNMMGH 321 (332)
Q Consensus 286 L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~l~~~ 321 (332)
|+.|.+++.. ...+..+++|+.|++++|.++.-...
T Consensus 286 Ls~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp CCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred CCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 9999998643 22334578999999999988754333
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.65 E-value=3.8e-08 Score=76.10 Aligned_cols=64 Identities=23% Similarity=0.508 Sum_probs=54.7
Q ss_pred CCCCCCcccCCCceEEecCCCcc--ccCCCCCCCccEEEeecCCCccchh-hhcCCCCCcEEEeecCcC
Q psy8550 106 FCPPDCDCNDETLVVTCKEANLD--VIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQL 171 (332)
Q Consensus 106 ~~p~~c~c~~~~~~~~c~~~~l~--~lp~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l 171 (332)
.||..|.|... .++|.+..++ .+|.+++.+++.|+|++|.|+.|+. .|..+++|++|+|.+|.+
T Consensus 1 ~CP~~C~C~~~--~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 1 PCPAPCSCAGT--LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CCCTTCEEETT--EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CcCCCCEEcCC--EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 49999999854 7999999999 9999999999999999999988887 667777888887777754
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=6e-08 Score=79.78 Aligned_cols=114 Identities=11% Similarity=0.021 Sum_probs=64.9
Q ss_pred cCCCCCCCEEEccCC-CCCCCC----ccccCCCCCCcEeeccCCCCcccC----hhhcCCCCCCcEEeCCCCCCCCcC--
Q psy8550 203 FIGLKSLKVLNLRGN-FLEDLP----DRLFAPLSHLEELDLGQNRISRID----QACFEGLTALRILYLDDNQLRSVP-- 271 (332)
Q Consensus 203 ~~~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~-- 271 (332)
+...++|++|+|++| .+.... ...+...++|++|++++|.+.... ...+...++|++|+|++|.+.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344455555555555 544211 112344456666666666665322 223344466777777777776532
Q ss_pred --cccccCCCCccEEEc--CCCcCCccC----chhcCCCCCCCEEEccCCCCC
Q psy8550 272 --TPSFIYLGMLAELRV--GLNVFTTLA----DGAFNGLGRLSALDLRGAGLT 316 (332)
Q Consensus 272 --~~~~~~l~~L~~L~L--~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~ 316 (332)
...+...++|++|++ ++|.+.... ...+...++|+.|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 224455567788888 677777432 234555677888888888764
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.24 E-value=1.3e-07 Score=77.79 Aligned_cols=122 Identities=11% Similarity=0.071 Sum_probs=59.2
Q ss_pred chhhhcCCCCCcEEEeecC-cCcccC----CCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCCCCCCCCcc
Q psy8550 151 VDSAIQFYSSLQHVDLSHN-QLVNIP----IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225 (332)
Q Consensus 151 l~~~~~~l~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 225 (332)
+...+...++|++|++++| .+.... ...+...++|++|++++|.+.......+. .
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~--------------------~ 87 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA--------------------E 87 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH--------------------H
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH--------------------H
Confidence 3445666677777777777 665321 12233445556666655555432111110 1
Q ss_pred ccCCCCCCcEeeccCCCCcccC----hhhcCCCCCCcEEeC--CCCCCCCcCc----ccccCCCCccEEEcCCCcCC
Q psy8550 226 LFAPLSHLEELDLGQNRISRID----QACFEGLTALRILYL--DDNQLRSVPT----PSFIYLGMLAELRVGLNVFT 292 (332)
Q Consensus 226 ~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L--~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~ 292 (332)
.+...++|++|++++|.+.... ...+...+.|++|++ ++|.+..... ..+...++|++|++++|.+.
T Consensus 88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1122234555555555544321 233444455666666 5566554221 12334456677777766654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.21 E-value=1.1e-06 Score=76.21 Aligned_cols=77 Identities=27% Similarity=0.343 Sum_probs=34.6
Q ss_pred CCCcEeeccCCCCcccCh--hhcCCCCCCcEEeCCCCCCCCcCcccccCCC--CccEEEcCCCcCCccCc-------hhc
Q psy8550 231 SHLEELDLGQNRISRIDQ--ACFEGLTALRILYLDDNQLRSVPTPSFIYLG--MLAELRVGLNVFTTLAD-------GAF 299 (332)
Q Consensus 231 ~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~-------~~~ 299 (332)
++|+.|+|++|.++.+.+ ..+..+++|+.|+|++|.++++. .+..+. +|+.|+|++|++.+..| ..+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 344444444444444321 22334455555555555555442 122222 55555555555554222 124
Q ss_pred CCCCCCCEEE
Q psy8550 300 NGLGRLSALD 309 (332)
Q Consensus 300 ~~l~~L~~L~ 309 (332)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 4455555554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=1.1e-06 Score=71.04 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=46.9
Q ss_pred CCcEeeccCCCCcccChhhcCCCCCCcEEeCCCCC-CCCcCcccccCC----CCccEEEcCCC-cCCccCchhcCCCCCC
Q psy8550 232 HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ-LRSVPTPSFIYL----GMLAELRVGLN-VFTTLADGAFNGLGRL 305 (332)
Q Consensus 232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n-~l~~~~~~~~~~l~~L 305 (332)
+|+.||++++.++...-..+..+++|++|+|++|. +++..-..++.+ ++|++|++++| +++..--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45566666665554444445556666666666663 443322233332 35667777666 3554333345566777
Q ss_pred CEEEccCCC-CCC
Q psy8550 306 SALDLRGAG-LTN 317 (332)
Q Consensus 306 ~~L~Ls~n~-l~~ 317 (332)
+.|++++|. ++.
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 777777763 443
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.07 E-value=2.3e-06 Score=74.20 Aligned_cols=96 Identities=22% Similarity=0.180 Sum_probs=68.5
Q ss_pred eeccCCCCcccC---hhhcCCCCCCcEEeCCCCCCCCcCc--ccccCCCCccEEEcCCCcCCccCc-hhcCCCCCCCEEE
Q psy8550 236 LDLGQNRISRID---QACFEGLTALRILYLDDNQLRSVPT--PSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALD 309 (332)
Q Consensus 236 L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 309 (332)
++++.|....+. .....++++|+.|+|++|.+++++. ..+..+++|+.|+|++|.+++... ..+..+ +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 556666443331 1122457899999999999998763 456689999999999999998732 334444 999999
Q ss_pred ccCCCCCCc-c------cccccCCCCcccC
Q psy8550 310 LRGAGLTNM-M------GHSMALGDYLHWI 332 (332)
Q Consensus 310 Ls~n~l~~l-~------~~~~~~l~~L~~l 332 (332)
|++|.+.+- + ...++.++.|+.|
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~L 256 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRL 256 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEE
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeE
Confidence 999999752 2 2346677777643
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=6.4e-06 Score=66.59 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=16.7
Q ss_pred CCcEEEcCCCcccccCccccCCCCCCCEEEccCC
Q psy8550 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217 (332)
Q Consensus 184 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 217 (332)
.|+.|++++|.++...-..+.++++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555544433333444445555555544
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.21 E-value=0.00062 Score=52.13 Aligned_cols=33 Identities=39% Similarity=0.512 Sum_probs=13.4
Q ss_pred CCEEEccCCCCCCCCccccCCCCCCcEeeccCC
Q psy8550 209 LKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241 (332)
Q Consensus 209 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 241 (332)
+++|+|++|.++.++++.|..+++|+.|+|++|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 344444444444444433333344444444433
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.55 E-value=0.0016 Score=53.46 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=37.3
Q ss_pred CCCCcEEEcCCCcccccCcc----ccCCCCCCCEEEccCCCCCCCCc----cccCCCCCCcEeeccCCCC---ccc----
Q psy8550 182 QEKLVELQLNHNKLSSVNNK----TFIGLKSLKVLNLRGNFLEDLPD----RLFAPLSHLEELDLGQNRI---SRI---- 246 (332)
Q Consensus 182 l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l---~~~---- 246 (332)
-+.|+.|+|++|++...... ++..-+.|++|+|++|.+..-.. ..+..-+.|++|+|++|.. ..-
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 34455555555544432211 12223455555555555542111 1123334466666654422 211
Q ss_pred ChhhcCCCCCCcEEeCCCCC
Q psy8550 247 DQACFEGLTALRILYLDDNQ 266 (332)
Q Consensus 247 ~~~~~~~l~~L~~L~L~~n~ 266 (332)
....+..-+.|+.|+++.|.
T Consensus 149 ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhCCCcCeEeccCCC
Confidence 01233444566777766554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.50 E-value=0.002 Score=52.94 Aligned_cols=113 Identities=18% Similarity=0.136 Sum_probs=77.9
Q ss_pred cCCCCCCCEEEccCC-CCCCCC----ccccCCCCCCcEeeccCCCCcccCh----hhcCCCCCCcEEeCCCCCCCCcCc-
Q psy8550 203 FIGLKSLKVLNLRGN-FLEDLP----DRLFAPLSHLEELDLGQNRISRIDQ----ACFEGLTALRILYLDDNQLRSVPT- 272 (332)
Q Consensus 203 ~~~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~- 272 (332)
+.+-+.|+.|+|++| .+..-. ...+..-+.|+.|+|++|.+..... +.+..-+.|++|+|++|.|.....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445578999999985 665321 1234556789999999999885433 334456789999999999986432
Q ss_pred ---ccccCCCCccEEEcCCC---cCCcc----CchhcCCCCCCCEEEccCCCC
Q psy8550 273 ---PSFIYLGMLAELRVGLN---VFTTL----ADGAFNGLGRLSALDLRGAGL 315 (332)
Q Consensus 273 ---~~~~~l~~L~~L~L~~n---~l~~~----~~~~~~~l~~L~~L~Ls~n~l 315 (332)
..+..-+.|+.|+|++| .+... +..++..-+.|+.|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 23445567999999876 33422 234566668899999987653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=88.63 E-value=1.2 Score=31.76 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=31.8
Q ss_pred CcCcccCCCCCCCCCCCcEEEcCCCcccccCccccCCCCCCCEEEccCC
Q psy8550 169 NQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217 (332)
Q Consensus 169 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 217 (332)
..++.|...+|.++.+|+.+.+.. .++.+...+|.++.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 345666667777777777777765 356666667777777777776543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=85.17 E-value=2.1 Score=30.53 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=23.4
Q ss_pred cccccCccccCCCCCCCEEEccCCCCCCCCccccCCCCCCcEeeccC
Q psy8550 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ 240 (332)
Q Consensus 194 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 240 (332)
.++.+...+|.++.+|+.+.+.. .++.+...+|.++.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 34445455555555555555543 34445555555555555555543
Done!