RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8550
(332 letters)
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 61.4 bits (150), Expect = 1e-12
Identities = 25/60 (41%), Positives = 33/60 (55%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
+LK L+L N L +PD F L +L+ LDL N ++ I F GL +LR L L N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 54.9 bits (133), Expect = 3e-10
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
L L L++N+L+ + + F GL +LKVL+L GN L + F+ L L LDL N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 52.2 bits (126), Expect = 3e-09
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
+L+ +DLS+N+L IP F+ L L L+ N L+S++ + F GL SL+ L+L GN
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Score = 45.2 bits (108), Expect = 8e-07
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 232 HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
+L+ LDL NR++ I F+GL L++L L N L S+ +F L L L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSL 53
Score = 39.4 bits (93), Expect = 1e-04
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 137 SIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
+++ L L NR+ + D A + +L+ +DLS N L +I F L L L+ N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 28.7 bits (65), Expect = 0.59
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQL 171
P+++ L L N + ++ A SL+ +DLS N L
Sbjct: 24 PNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 25.6 bits (57), Expect = 8.6
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 281 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMA 324
L L + N T + DGAF GL L LDL G LT++ + +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS 45
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 47.7 bits (113), Expect = 4e-06
Identities = 50/242 (20%), Positives = 96/242 (39%), Gaps = 9/242 (3%)
Query: 50 TEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPP 109
L L E+ L L D+ + + + L L ++ + P
Sbjct: 99 DLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP 158
Query: 110 DCDC-NDETLVVTCKEANLDVIP--ITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
+ N + L ++ +L +P ++ ++ L L N+I + I+ S+L+ +DL
Sbjct: 159 LRNLPNLKNLDLS--FNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDL 216
Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
S+N ++ + + L L+L++NKL + + L +L+ L+L N + +
Sbjct: 217 SNNSIIELLS-SLSNLKNLSGLELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSIS--S 272
Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 286
L++L ELDL N +S L L +L L+++ L L
Sbjct: 273 LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSN 332
Query: 287 GL 288
G
Sbjct: 333 GE 334
Score = 34.9 bits (80), Expect = 0.049
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Query: 131 PITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQL 190
I L +++ L L N I + S++ +L ++LS+N+L ++P L L L
Sbjct: 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN-LETLDL 262
Query: 191 NHNKLSSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQA 249
++N++SS+++ L +L+ L+L GN LP L L+L +
Sbjct: 263 SNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKA----L 316
Query: 250 CFEGLTALRILYLDDNQLRSVPT 272
+ + L + N S P
Sbjct: 317 ELKLNSILLNNNILSNGETSSPE 339
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 44.3 bits (105), Expect = 4e-05
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 25/164 (15%)
Query: 128 DVIPITLNPSIQRL---VLKYNRIKTVDSAIQFYSSLQHVDLSHNQL------VNIPIRG 178
+++P L + RL L K + SA++ SL+ + LS N+ + ++G
Sbjct: 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG 76
Query: 179 FEPQEKLVELQLNHNKLSSVNNKTFIGL---KSLKVLNLRGNFLEDLPDRLFA-----PL 230
L EL L+ N L L SL+ L L N L D RL A
Sbjct: 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136
Query: 231 SHLEELDLGQNRISRIDQACFE------GLTALRILYLDDNQLR 268
LE+L LG+NR+ +C L+ L L +N +
Sbjct: 137 PALEKLVLGRNRLE--GASCEALAKALRANRDLKELNLANNGIG 178
Score = 42.7 bits (101), Expect = 1e-04
Identities = 40/172 (23%), Positives = 64/172 (37%), Gaps = 23/172 (13%)
Query: 159 SSLQHVDLSHNQL----VNIPIRGF-EPQEKLVELQLNHNKLSSVN----NKTFIGLKSL 209
SSLQ + L++N L + + +G + L +L L N+L + K + L
Sbjct: 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167
Query: 210 KVLNLRGN-FLEDLPDRL---FAPLSHLEELDLGQNRISRID----QACFEGLTALRILY 261
K LNL N + L +LE LDL N ++ L +L +L
Sbjct: 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227
Query: 262 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 313
L DN L + + +L+ L + + N + A DL
Sbjct: 228 LGDNNLTDAGA-AALASALLSPNISLLTL-----SLSCNDITDDGAKDLAEV 273
Score = 31.2 bits (71), Expect = 0.80
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQ-----EKLVELQLNHNKLSSVNNKTFIGL----KSLK 210
SL+ ++L N L + L+ L L+ N ++ K + +SL
Sbjct: 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281
Query: 211 VLNLRGNFLEDLPDRLFAPLSH-----LEELDLG 239
L+LRGN + +L A LE L +
Sbjct: 282 ELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 44.1 bits (104), Expect = 8e-05
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 3/153 (1%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL-RGN 217
SL+ V L N F + L +++N L N + SL++L+L R
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463
Query: 218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY 277
F LPD + LE LDL +N+ S L+ L L L +N+L
Sbjct: 464 FFGGLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521
Query: 278 LGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
L L + N + +F+ + LS LDL
Sbjct: 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554
Score = 42.5 bits (100), Expect = 3e-04
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
PS+Q L L N+ L+++DLS NQ R +L++L+L+ NKL
Sbjct: 452 PSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAPLSHLEELDLGQNRIS 244
S K L L+L N L +P F+ + L +LDL QN++S
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPAS-FSEMPVLSQLDLSQNQLS 560
Score = 40.2 bits (94), Expect = 0.001
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 160 SLQHVDLSHNQLV-NIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
SLQ + L+ N+ +P ++L L L+ N+ S + L L L L N
Sbjct: 453 SLQMLSLARNKFFGGLP--DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510
Query: 219 LE-DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
L ++PD L + L LDL N++S A F + L L L NQL
Sbjct: 511 LSGEIPDEL-SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559
Score = 36.7 bits (85), Expect = 0.018
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 136 PSIQRLVLKYNRI--KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
P IQ + L N++ D SSL++++LS+N RG P L L L++N
Sbjct: 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLDLSNN 150
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
LS SLKVL+L GN L L+ LE L L N++
Sbjct: 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ 210
Query: 254 LTALRILYLDDNQL 267
+ +L+ +YL N L
Sbjct: 211 MKSLKWIYLGYNNL 224
Score = 32.9 bits (75), Expect = 0.24
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 137 SIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLVN-IPIRGFEPQEKLVELQLNHNK 194
S+ L L YN + + S++ +LQ++ L N+L IP F Q KL+ L L+ N
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ-KLISLDLSDNS 295
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
LS + I L++L++L+L N L L+ L L N+ S
Sbjct: 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345
Score = 30.6 bits (69), Expect = 1.4
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 129 VIPITLN--PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLV-NIPIRGFEPQEK 184
+P L + +L L N++ + + L +DLSHNQL IP F
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA-SFSEMPV 548
Query: 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFL 219
L +L L+ N+LS K ++SL +N+ N L
Sbjct: 549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583
Score = 29.8 bits (67), Expect = 2.7
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 155 IQFYSSLQHVDLSHNQLV-NIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLN 213
I +SSL+ +DL N LV IP L L L N+L + +KSLK +
Sbjct: 160 IGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218
Query: 214 LRGNFLE-DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT 272
L N L ++P + L+ L LDL N ++ + L L+ L+L N+L S P
Sbjct: 219 LGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL-SGPI 276
Query: 273 PSFIY 277
P I+
Sbjct: 277 PPSIF 281
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 207 KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
+L+ L+L N + DLP + L +LE LDL N+I+ +
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
L L L++N+++ + L +L+ L+L GN + DL
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 232 HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 271
+LE LDL N+I+ + L L L L N++ +
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
Score = 30.2 bits (69), Expect = 0.14
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP 175
+++ L L N+I + + +L+ +DLS N++ ++
Sbjct: 1 TNLETLDLSNNQITDL-PPLSNLPNLETLDLSGNKITDLS 39
Score = 29.4 bits (67), Expect = 0.25
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNN 200
+L+ +DLS+NQ+ ++P L L L+ NK++ ++
Sbjct: 2 NLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSP 40
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 42.0 bits (98), Expect = 3e-04
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 108 PPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLS 167
P + N +TL L IP TL +IQ + L NRI + + S+LQ +DL
Sbjct: 215 PENLQGNIKTLYA--NSNQLTSIPATLPDTIQEMELSINRITELPERLP--SALQSLDLF 270
Query: 168 HNQLVNIP----------------IRGFEPQ--EKLVELQLNHNKLSSVNNKTFIGLKSL 209
HN++ +P IR + L + N L+++ GLK+L
Sbjct: 271 HNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTL 330
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
+ N L LP L P L+ LD+ +N+I+ + + +T L + N L +
Sbjct: 331 EAGE---NALTSLPASL--P-PELQVLDVSKNQITVLPETLPPTITT---LDVSRNALTN 381
Query: 270 VP 271
+P
Sbjct: 382 LP 383
Score = 35.1 bits (80), Expect = 0.049
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 106 FCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVD 165
P +TL E L +P +L P +Q L + N+I + + ++ +D
Sbjct: 318 ALPETLPPGLKTLEA--GENALTSLPASLPPELQVLDVSKNQITVLPETLP--PTITTLD 373
Query: 166 LSHNQLVNIP 175
+S N L N+P
Sbjct: 374 VSRNALTNLP 383
Score = 35.1 bits (80), Expect = 0.055
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 119 VVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP--- 175
V+ + + V+P TL P+I L + N + + + ++LQ + S N LV +P
Sbjct: 350 VLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESL 407
Query: 176 --IRGFEPQEKLVELQLNHNKLSSVNN----KTFIGLKSLKVLNLRGNF-----LEDLPD 224
RG PQ + ++ N ++ N + +G + +VL G+F L
Sbjct: 408 PHFRGEGPQPTRIIVEYNPFSERTIQNMQRLMSSVGYQGPRVLFAMGDFSIVRVTRPLHQ 467
Query: 225 RLFAPLSHLEELDLGQNRI--SRIDQACFEGLTALRILYLDDNQ 266
+ L++LEE D+ Q R + ++ A F + L D Q
Sbjct: 468 AVQGWLTNLEEEDVNQWRAFETEVNAAAFSMF----LDRLSDTQ 507
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 41.0 bits (96), Expect = 7e-04
Identities = 24/80 (30%), Positives = 35/80 (43%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L++ L L+ L+ +NL GN + ++ LE LDL N +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 248 QACFEGLTALRILYLDDNQL 267
LT+LRIL L+ N L
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502
Score = 35.9 bits (83), Expect = 0.028
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 161 LQHVDLSHNQLV-NIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFL 219
LQ ++LS N + NIP L L L++N + ++ L SL++LNL GN L
Sbjct: 444 LQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
Score = 28.6 bits (64), Expect = 6.1
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 171 LVNIPIRGFEPQE--KLVELQ---LNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE-DLPD 224
L N +RGF P + KL LQ L+ N + + + SL+VL+L N +P+
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484
Query: 225 RLFAPLSHLEELDLGQNRIS 244
L L+ L L+L N +S
Sbjct: 485 SL-GQLTSLRILNLNGNSLS 503
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 32.1 bits (74), Expect = 0.14
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
+ ++S+ F G SLK + L + L + F S L + + + ++ I + F
Sbjct: 20 SSVTSIGEYAFSGCTSLKSITL-PSSLTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFS 77
Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 301
++L + + N L ++ + +F L + + +V TT+ D AF+
Sbjct: 78 NCSSLTSITIPSN-LTTIGSYAFSNCS-LKSITIPSSV-TTIGDYAFSN 123
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 29.6 bits (68), Expect = 0.14
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 206 LKSLKVLNLRGNFLEDLPDRLFAP 229
L +L+ L+L N L LP F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 29.2 bits (67), Expect = 0.18
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 230 LSHLEELDLGQNRISRIDQACFEG 253
L +L ELDL N++S + F+G
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 27.7 bits (63), Expect = 0.58
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 254 LTALRILYLDDNQLRSVP 271
L LR L L +NQL S+P
Sbjct: 1 LPNLRELDLSNNQLSSLP 18
Score = 26.2 bits (59), Expect = 2.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEP 181
+L+ +DLS+NQL ++P F+
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 29.6 bits (68), Expect = 0.14
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 206 LKSLKVLNLRGNFLEDLPDRLFAP 229
L +L+ L+L N L LP F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 29.2 bits (67), Expect = 0.18
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 230 LSHLEELDLGQNRISRIDQACFEG 253
L +L ELDL N++S + F+G
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 27.7 bits (63), Expect = 0.58
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 254 LTALRILYLDDNQLRSVP 271
L LR L L +NQL S+P
Sbjct: 1 LPNLRELDLSNNQLSSLP 18
Score = 26.2 bits (59), Expect = 2.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEP 181
+L+ +DLS+NQL ++P F+
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 33.6 bits (76), Expect = 0.15
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 32/181 (17%)
Query: 114 NDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVN 173
N+ V+ E+ L +P L I LV+ N + ++ + L+ +++S NQL +
Sbjct: 200 NNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS 256
Query: 174 IPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHL 233
+P+ P L+EL + N L+ + GL L + GN L LP + P L
Sbjct: 257 LPV--LPP--GLLELSIFSNPLTHLPALP-SGLCKLWIF---GNQLTSLP--VLPP--GL 304
Query: 234 EELDLGQNRISRIDQACFE---------GLTAL-------RILYLDDNQLRSVPT-PSFI 276
+EL + N+++ + E LT+L + L + DNQL S+PT PS +
Sbjct: 305 QELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSEL 364
Query: 277 Y 277
Y
Sbjct: 365 Y 365
>gnl|CDD|197684 smart00365, LRR_SD22, Leucine-rich repeat, SDS22-like subfamily.
Length = 22
Score = 28.0 bits (64), Expect = 0.49
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 230 LSHLEELDLGQNRISRI 246
L++LEELDLG N+I +I
Sbjct: 1 LTNLEELDLGDNKIKKI 17
>gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase.
Length = 1050
Score = 31.7 bits (72), Expect = 0.67
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 147 RIKT-VDSAIQFYSSLQHVDLSHNQLVN-IPIRG-FEPQEKLVELQLNHNKLSSVNNKTF 203
R KT +D+ FYS L +S + + IP++G + P L LQ ++ + SV+++
Sbjct: 770 RFKTDIDNKRVFYSDLNGFQMSRRETYDKIPLQGNYYPMPSLAFLQGSNGQRFSVHSRQS 829
Query: 204 IGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ----NRISRI 246
+G+ SLK +LE + DR L + LGQ NR +
Sbjct: 830 LGVASLK-----NGWLEIMLDR---RLVQDDGRGLGQGVMDNRPMNV 868
>gnl|CDD|227136 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase
component (subunits alpha and beta) [Lipid metabolism].
Length = 526
Score = 30.6 bits (70), Expect = 1.2
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 19/92 (20%)
Query: 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG-LTAL-RI-LYLDDNQLRSVPTPSF 275
+ +L +R G +++ +G LTA R+ L LD SF
Sbjct: 15 VAELRERR-------AIAVAG-GGEKAVEKQHGKGKLTARERVELLLDPG--------SF 58
Query: 276 IYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
+ LG LA R+G + DG G+G ++
Sbjct: 59 LELGALAGHRMGGDANELPGDGVVTGIGTING 90
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 29.9 bits (67), Expect = 1.8
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Query: 161 LQHVDLSHNQLVNIPIR----GFEPQEKLVELQLNHNKL--SSVNNKTFIGL---KSLKV 211
L+ V N+L N E E L E+++ N + V F+GL SL+V
Sbjct: 159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEV 218
Query: 212 LNLRGNFLEDLPDRLFAPL----SHLEELDLG 239
L+L+ N R A + L EL L
Sbjct: 219 LDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250
>gnl|CDD|177952 PLN02318, PLN02318, phosphoribulokinase/uridine kinase.
Length = 656
Score = 29.8 bits (67), Expect = 2.1
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 6 KYVKRKVQ--GQLDEIFWIDILDVTYILYK--LHPGFQN---------NPKSNFKSPTEI 52
K V R +Q GQ E I + Y +YK + P Q NP S F++PT I
Sbjct: 193 KRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYI 252
Query: 53 LKS 55
LKS
Sbjct: 253 LKS 255
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 29.6 bits (66), Expect = 2.7
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 123 KEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQ 182
+ ++ P+ PS K DS FY + + +NQL + + E +
Sbjct: 107 PQKKQNIKPVKPIPSKPE--------KPEDSPSPFYDKARVMTPINNQLATLDLAVLEAK 158
Query: 183 EKLV 186
E L+
Sbjct: 159 EPLI 162
>gnl|CDD|167003 PRK00560, PRK00560, molybdopterin-guanine dinucleotide biosynthesis
protein A; Provisional.
Length = 196
Score = 28.6 bits (64), Expect = 3.4
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 179 FEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPL 230
F L+E Q L + K +I K K FL + LF+PL
Sbjct: 31 FGSYSSLLEYQYTR--LLKLFKKVYISTKD-KKFEFNAPFLLEKESDLFSPL 79
>gnl|CDD|190614 pfam03366, YEATS, YEATS family. We have named this family the
YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF
small subunit'. This family also contains the GAS41
protein. All these proteins are thought to have a
transcription stimulatory activity.
Length = 84
Score = 27.1 bits (61), Expect = 3.8
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 20/63 (31%)
Query: 4 TRK---YVKRKVQGQLDEIFWIDILDVTYILYKLHPGFQNNPKSNFKSPTEILKSLLIIP 60
T K +V R + + D ++I VT+ KLH F NP P P
Sbjct: 1 THKWTVFV-RGLDNEGDLSYFIK--KVTF---KLHESF-PNPVRTVTKP----------P 43
Query: 61 FEV 63
FEV
Sbjct: 44 FEV 46
>gnl|CDD|214639 smart00364, LRR_BAC, Leucine-rich repeats, bacterial type.
Length = 20
Score = 24.9 bits (56), Expect = 5.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 208 SLKVLNLRGNFLEDLPD 224
SLK LN+ N L LP+
Sbjct: 3 SLKELNVSNNQLTSLPE 19
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.412
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,929,838
Number of extensions: 1648058
Number of successful extensions: 1424
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1369
Number of HSP's successfully gapped: 69
Length of query: 332
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 235
Effective length of database: 6,635,264
Effective search space: 1559287040
Effective search space used: 1559287040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.2 bits)