RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8550
(332 letters)
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 203 bits (517), Expect = 1e-61
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 1/207 (0%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVD 165
CPP C+C+ + V C +P + + L L NRIKT++ + L+ ++
Sbjct: 3 CPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELE 62
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
L+ N + + F L L L N+L + F GL +L L++ N + L D
Sbjct: 63 LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY 122
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
+F L +L+ L++G N + I F GL +L L L+ L S+PT + +L L LR
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLRG 312
+ + D +F L RL L++
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISH 209
Score = 142 bits (359), Expect = 9e-39
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 3/184 (1%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
++ +L + N+I + D Q +L+ +++ N LV I R F L +L L
Sbjct: 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDL-GQNRISRIDQACFEG 253
L+S+ + L L VL LR + + D F L L+ L++ + + C G
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223
Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 313
L L L + L +VP + +L L L + N +T+ + L RL + L G
Sbjct: 224 LN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282
Query: 314 GLTN 317
L
Sbjct: 283 QLAV 286
Score = 133 bits (336), Expect = 2e-35
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 1/178 (0%)
Query: 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
S+++L L+ + ++ + A+ L + L H + I F+ +L L+++H
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
+ +L L++ L +P L +L L+L N IS I+ + L
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
L+ + L QL V +F L L L V N TTL + F+ +G L L L
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329
Score = 123 bits (311), Expect = 4e-32
Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 1/155 (0%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
+ L L++ I + D + + L+ +++SH ++ L L + H
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
L++V L L+ LNL N + + + L L+E+ L +++ ++ F GL
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
LR+L + NQL ++ F +G L L + N
Sbjct: 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Score = 112 bits (283), Expect = 3e-28
Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFY-SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
++ L + + + Y +L + ++H L +P L L L++N
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
+S++ L L+ + L G L + F L++L L++ N+++ ++++ F +
Sbjct: 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319
Query: 255 TALRILYLDDNQLR 268
L L LD N L
Sbjct: 320 GNLETLILDSNPLA 333
Score = 59.0 bits (143), Expect = 7e-10
Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 27/110 (24%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
+ + +P+ + + LDLG+NRI ++Q F L L L++N +
Sbjct: 12 QDRAVLCHRKRFVAVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV 68
Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
+V GAFN L L L LR L
Sbjct: 69 SAVE------------------------PGAFNNLFNLRTLGLRSNRLKL 94
Score = 31.2 bits (71), Expect = 0.53
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 258 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
R + + +VP L +G N TL F L L+L ++
Sbjct: 14 RAVLCHRKRFVAVPEGIPTET---RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70
Query: 318 M 318
+
Sbjct: 71 V 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 174 bits (442), Expect = 1e-52
Identities = 67/214 (31%), Positives = 99/214 (46%), Gaps = 3/214 (1%)
Query: 107 CPPDCDCNDET-LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHV 164
CP C C +E + +C + L +P+ + + QR+ L NRI V ++ + +L +
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61
Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHN-KLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
L N L I F L +L L+ N +L SV+ TF GL L L+L L++L
Sbjct: 62 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121
Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
LF L+ L+ L L N + + F L L L+L N++ SVP +F L L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
L + N + AF LGRL L L L+
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Score = 114 bits (288), Expect = 6e-30
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
+ L L ++ + + F ++LQ++ L N L +P F L L L+ N
Sbjct: 105 GRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
++SSV + F GL SL L L N + + F L L L L N +S +
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223
Query: 254 LTALRILYLDDNQLR 268
L AL+ L L+DN
Sbjct: 224 LRALQYLRLNDNPWV 238
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 167 bits (424), Expect = 3e-49
Identities = 61/235 (25%), Positives = 108/235 (45%), Gaps = 5/235 (2%)
Query: 86 TMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKY 145
T+W + V ++ L + + C+ + +L+ IP L +++ L L
Sbjct: 4 TLWMVWVLGVIISLS-KEESSNQASLSCDRNG-ICKGSSGSLNSIPSGLTEAVKSLDLSN 61
Query: 146 NRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFI 204
NRI + +S +Q +LQ + L+ N + I F L L L++N LS++++ F
Sbjct: 62 NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121
Query: 205 GLKSLKVLNLRGNFLEDLPDR-LFAPLSHLEELDLGQN-RISRIDQACFEGLTALRILYL 262
L SL LNL GN + L + LF+ L+ L+ L +G ++I + F GLT L L +
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181
Query: 263 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
D + L+S S + ++ L + + L + + + L+LR L
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236
Score = 90.6 bits (225), Expect = 1e-20
Identities = 30/212 (14%), Positives = 59/212 (27%), Gaps = 60/212 (28%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFY---------------------------SSLQHVDLSH 168
S+ L L N KT+ F + L+ +++
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183
Query: 169 NQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD---- 224
+ L + + + + + L L+ + + S++ L LR L+
Sbjct: 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243
Query: 225 ----RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM 280
+ + + ++ ++ L L NQL+SVP
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVP--------- 293
Query: 281 LAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
DG F+ L L + L
Sbjct: 294 ---------------DGIFDRLTSLQKIWLHT 310
Score = 80.5 bits (199), Expect = 3e-17
Identities = 21/139 (15%), Positives = 59/139 (42%), Gaps = 10/139 (7%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
++ L + + +++ +++ ++ H+ L Q + + + + L+L
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233
Query: 195 LSSVN--------NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
L + + + I + + + + L + +L +S L EL+ +N++ +
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSRNQLKSV 292
Query: 247 DQACFEGLTALRILYLDDN 265
F+ LT+L+ ++L N
Sbjct: 293 PDGIFDRLTSLQKIWLHTN 311
Score = 42.4 bits (100), Expect = 1e-04
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
+ + + + + V + S L ++ S NQL ++P F+ L ++ L+ N
Sbjct: 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 167 bits (424), Expect = 2e-48
Identities = 63/259 (24%), Positives = 102/259 (39%), Gaps = 28/259 (10%)
Query: 85 ITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLK 144
+T ++ A+ CP C C+++ V C L +P + + + L L
Sbjct: 24 LTAQVWILCAAIAAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLM 83
Query: 145 YNRIKTVDS-------------------------AIQFYSSLQHVDLSHNQLVNIPIRGF 179
N I+ + + A +SL ++L N L IP F
Sbjct: 84 ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF 143
Query: 180 EPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL-RGNFLEDLPDRLFAPLSHLEELDL 238
E KL EL L +N + S+ + F + SL L+L LE + + F L +L+ L+L
Sbjct: 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203
Query: 239 GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA 298
G I + L L L + N + SF L L +L V + + + A
Sbjct: 204 GMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261
Query: 299 FNGLGRLSALDLRGAGLTN 317
F+GL L L+L L++
Sbjct: 262 FDGLASLVELNLAHNNLSS 280
Score = 124 bits (313), Expect = 2e-32
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSH-NQLVNIPIRGFEPQEKLVELQLNHN 193
++ L L+ N I+++ A SL +DL +L I FE L L L
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
+ + L L+ L + GN ++ F LS L++L + +++S I++ F+G
Sbjct: 207 NIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264
Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
L +L L L N L S+P F L L EL + N
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 106 bits (267), Expect = 4e-26
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 4/135 (2%)
Query: 136 PSIQRLVL-KYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
PS+ RL L + +++ + + A + +L++++L + ++P P L EL+++ N
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGN 228
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
+ +F GL SLK L + + + + F L+ L EL+L N +S + F
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288
Query: 254 LTALRILYLDDNQLR 268
L L L+L N
Sbjct: 289 LRYLVELHLHHNPWN 303
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 162 bits (411), Expect = 2e-46
Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 34/263 (12%)
Query: 87 MWSLLVTTALLLLVH------QASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQR 140
M +LL+ + L +L+ ++ CP C C+++ V C NL +P ++ + +
Sbjct: 9 MPALLLVSLLSVLLMGCVAETGSAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRL 68
Query: 141 LVLKYNR------------------------IKTVDS-AIQFYSSLQHVDLSHNQLVNIP 175
L L N+ I+T++ A ++L ++L N+L IP
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 176 IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL-RGNFLEDLPDRLFAPLSHLE 234
F KL EL L +N + S+ + F + SL+ L+L L + + F LS+L
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
L+L + I L L L L N L ++ SF L L +L + + +
Sbjct: 189 YLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246
Query: 295 ADGAFNGLGRLSALDLRGAGLTN 317
AF+ L L ++L LT
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTL 269
Score = 123 bits (310), Expect = 5e-32
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 4/156 (2%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSH-NQLVNIPIRGFEPQEKLVELQLNHN 193
++ L L+ N I+++ A SL+ +DL +L I FE L L L
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
L + L L L+L GN L + F L HL++L + Q++I I++ F+
Sbjct: 196 NLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253
Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
L +L + L N L +P F L L + + N
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 105 bits (265), Expect = 7e-26
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 136 PSIQRLVL-KYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
PS++RL L + R+ + F S+L++++L+ L IP P KL EL L+
Sbjct: 160 PSLRRLDLGELKRLSYISEGA-FEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSG 216
Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
N LS++ +F GL L+ L + + ++ + F L L E++L N ++ + F
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276
Query: 253 GLTALRILYLDDNQLR 268
L L ++L N
Sbjct: 277 PLHHLERIHLHHNPWN 292
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 157 bits (398), Expect = 2e-45
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 7/197 (3%)
Query: 98 LLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQF 157
L ++ CP +C C ++C + L +P +L L L +N + + +
Sbjct: 3 LASGRSVVSCPANCLCASNI--LSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTP 60
Query: 158 Y--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215
++L + LSHN L I F P L L L+ N L +++ F L++L+VL L
Sbjct: 61 TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120
Query: 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG---LTALRILYLDDNQLRSVPT 272
N + + F ++ L++L L QN+ISR + L L +L L N+L+ +P
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180
Query: 273 PSFIYLGMLAELRVGLN 289
L + + L+
Sbjct: 181 TDLQKLPAWVKNGLYLH 197
Score = 91.1 bits (226), Expect = 6e-21
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Query: 208 SLKVLNLRGNFLEDL-PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ 266
+L+L N L L + L++L L L N ++ I F + LR L L N
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99
Query: 267 LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
L ++ F L L L + N + AF + +L L L ++
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 152 bits (385), Expect = 2e-44
Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 1/207 (0%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVD 165
C CN+ V C L IP + ++L L+ N++ ++ S A + L+ +
Sbjct: 8 DGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY 67
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
L+ N+L +P F+ + L L + NKL ++ F L +L L L N L+ LP R
Sbjct: 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
+F L+ L L LG N + + + F+ LT+L+ L L +NQL+ VP +F L L L+
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLRG 312
+ N + +GAF+ L +L L L+
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQE 214
Score = 94.7 bits (236), Expect = 9e-23
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Query: 139 QRLVLKYNRIKTVDSAIQFY-SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSS 197
+ L + N+++ + + +L + L NQL ++P R F+ KL L L +N+L S
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147
Query: 198 VNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTAL 257
+ F L SLK L L N L+ +P+ F L+ L+ L L N++ R+ + F+ L L
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207
Query: 258 RILYLDDN 265
++L L +N
Sbjct: 208 KMLQLQEN 215
Score = 68.1 bits (167), Expect = 3e-13
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 209 LKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR 268
++ L +P + A ++LDL N++S + F LT LR+LYL+DN+L+
Sbjct: 18 KNSVDCSSKKLTAIPSNIPA---DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74
Query: 269 SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
++P F L L L V N L G F+ L L+ L L L
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 152 bits (386), Expect = 3e-44
Identities = 54/240 (22%), Positives = 89/240 (37%), Gaps = 32/240 (13%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSA------------ 154
CP C C+ + C L +P + S RL L+ N+++++
Sbjct: 1 CPSRCSCSGTE--IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLS 58
Query: 155 -----IQFYS----------SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVN 199
+ F SL+++DLS N ++ + F E+L L H+ L ++
Sbjct: 59 LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMS 117
Query: 200 NK-TFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNR-ISRIDQACFEGLTAL 257
F+ L++L L++ + +F LS LE L + N F L L
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177
Query: 258 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
L L QL + +F L L L + N F +L + L L LD +
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237
Score = 123 bits (311), Expect = 3e-33
Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 4/158 (2%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYS--SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
++ L +++ +K + F S +L ++D+SH F L L++ N
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160
Query: 194 K-LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
+ F L++L L+L LE L F LS L+ L++ N +D ++
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220
Query: 253 GLTALRILYLDDNQLRSVPTPSFIYL-GMLAELRVGLN 289
L +L++L N + + + LA L + N
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 100 bits (251), Expect = 1e-24
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 5/137 (3%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQ-LVNIPIRGFEPQEKLVELQLNH 192
++ L + + + + I F SSL+ + ++ N N F L L L+
Sbjct: 126 RNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
+L ++ F L SL+VLN+ N L + L+ L+ LD N I + +
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244
Query: 253 GL-TALRILYLDDNQLR 268
++L L L N
Sbjct: 245 HFPSSLAFLNLTQNDFA 261
Score = 68.5 bits (168), Expect = 2e-13
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
S + L +P + S L+L N++ + F+ LT L L L N L
Sbjct: 8 SGTEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64
Query: 268 --RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
+ + S L L + N T+ F GL +L LD + + L M
Sbjct: 65 SFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQM 116
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 154 bits (391), Expect = 1e-42
Identities = 49/209 (23%), Positives = 77/209 (36%), Gaps = 4/209 (1%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVD 165
C + C+ L+ IP TL S + L +N + T+ + +L +D
Sbjct: 4 SDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLD 63
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
L+ Q+ I F+ Q +L L L N L + G K+LK L + +
Sbjct: 64 LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
LE L LG N IS I L++L +N + + L L
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183
Query: 286 VGL--NVFTTLADGAFNGLGRLSALDLRG 312
+ L N + GAF+ +L+ G
Sbjct: 184 LNLNGNDIAGIEPGAFDSA-VFQSLNFGG 211
Score = 127 bits (322), Expect = 4e-33
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 6/182 (3%)
Query: 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNHN 193
+Q L L YN ++ + A + L+ +DL+ +L + F+ L L L+H+
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL---FAPLSHLEELDLGQNRISRIDQAC 250
L + + F GL +L+ LNL+GN + L LE L L +S IDQ
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495
Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
F L + + L N+L S + +L + L + N + + L + ++L
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554
Query: 311 RG 312
R
Sbjct: 555 RQ 556
Score = 120 bits (304), Expect = 1e-30
Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 8/189 (4%)
Query: 136 PSIQRLVLKYNRIKTVD-SAIQFY--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
+++ L L ++ I+T D +Q S LQ ++LS+N+ +++ F+ +L L L
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409
Query: 193 NKLSSVNNKT-FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC- 250
+L + ++ F L LKVLNL + L+ ++LF L L+ L+L N + +
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469
Query: 251 --FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSAL 308
+ L L IL L L S+ +F L M+ + + N T+ + A + L + L
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-L 528
Query: 309 DLRGAGLTN 317
+L ++
Sbjct: 529 NLASNHISI 537
Score = 120 bits (302), Expect = 2e-30
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 4/181 (2%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
+Q L L + + S + S+L+ + LS N+ N+ L L + N
Sbjct: 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337
Query: 196 S-SVNNKTFIGLKSLKVLNLRGNFLEDLP--DRLFAPLSHLEELDLGQNRISRIDQACFE 252
+ L++L+ L+L + +E + LSHL+ L+L N + F+
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397
Query: 253 GLTALRILYLDDNQLRSVPTPS-FIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 311
L +L L +L+ S F L +L L + ++ ++ F+GL L L+L+
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457
Query: 312 G 312
G
Sbjct: 458 G 458
Score = 118 bits (299), Expect = 5e-30
Identities = 45/193 (23%), Positives = 69/193 (35%), Gaps = 7/193 (3%)
Query: 136 PSIQRLVLKYNRIKTVDSAI---QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
S+ + + + A+ S++ ++L + NI F L EL L
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287
Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS-RIDQACF 251
LS + + +GL +LK L L N E+L + L L + N + C
Sbjct: 288 THLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346
Query: 252 EGLTALRILYLDDNQLRSVP--TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALD 309
E L LR L L + + + L L L + N +L AF +L LD
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 310 LRGAGLTNMMGHS 322
L L S
Sbjct: 407 LAFTRLKVKDAQS 419
Score = 117 bits (295), Expect = 2e-29
Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 8/190 (4%)
Query: 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQL-VNIPIRGFEPQEKLVELQLNHN 193
++++LVL N+ + + + + SL H+ + N + + E E L EL L+H+
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360
Query: 194 KLSSV--NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID-QAC 250
+ + N L L+ LNL N L F LE LDL R+ D Q+
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420
Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL---ADGAFNGLGRLSA 307
F+ L L++L L + L F L L L + N F + LGRL
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480
Query: 308 LDLRGAGLTN 317
L L L++
Sbjct: 481 LVLSFCDLSS 490
Score = 112 bits (281), Expect = 1e-27
Identities = 39/183 (21%), Positives = 68/183 (37%), Gaps = 6/183 (3%)
Query: 135 NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRG--FEPQEKLVELQLNH 192
+ L L N I ++ + Q ++ Q + + +G + L
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237
Query: 193 NKLSSVNNKTFIGLK--SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC 250
++ F GL S++ +NL+ ++ ++ F S L+ELDL +S +
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG- 296
Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN-VFTTLADGAFNGLGRLSALD 309
GL+ L+ L L N+ ++ S L L + N L G L L LD
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356
Query: 310 LRG 312
L
Sbjct: 357 LSH 359
Score = 108 bits (271), Expect = 3e-26
Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 6/162 (3%)
Query: 136 PSIQRLVLKYNRIKTVD--SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
P ++ L L + R+K D S Q L+ ++LSH+ L + F+ L L L N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 194 KLSSVNNK---TFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC 250
N + + L L++L L L + F L + +DL NR++
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519
Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
L + L L N + + L + + N
Sbjct: 520 LSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 76.6 bits (189), Expect = 1e-15
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
K N L ++P L + E L+ N + I F L L L L Q+
Sbjct: 15 KTYNCENLGLNEIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71
Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
+ +F L L + N +A+ A +G L L G++++
Sbjct: 72 IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 152 bits (386), Expect = 7e-42
Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 7/216 (3%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVD 165
C + C + L +P + S + + L +N +K + + +S LQ +D
Sbjct: 3 SLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLD 62
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
LS ++ I + + L L L N + S + +F GL SL+ L L L
Sbjct: 63 LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 122
Query: 226 LFAPLSHLEELDLGQNRISRID-QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
L L++L++ N I A F LT L + L N ++++ +L ++
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182
Query: 285 RVGL----NVFTTLADGAFNGLGRLSALDLRGAGLT 316
+ L N + D AF G+ +L L LRG +
Sbjct: 183 NLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNS 217
Score = 132 bits (334), Expect = 1e-34
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 2/180 (1%)
Query: 135 NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNHN 193
S++ L L +N + + LQH+D H+ L + F EKL+ L +++
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
+ F+GL SL L + GN F ++ +FA ++L LDL + ++ +I F+
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494
Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
L L++L + N L + + + L L+ L N T + L+ +L
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554
Score = 115 bits (291), Expect = 7e-29
Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 3/157 (1%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYS--SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
+Q L +++ +K V F S L ++D+S+ F L L++ N
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458
Query: 194 KLSSV-NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
+ F +L L+L LE + +F L L+ L++ N + +D + +
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518
Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
L +L L N++ + + LA + N
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
Score = 108 bits (271), Expect = 3e-26
Identities = 36/194 (18%), Positives = 66/194 (34%), Gaps = 14/194 (7%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
+ L+L N I++ + +SL+++ +L ++ L +L + HN
Sbjct: 80 HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139
Query: 195 LSSVN-NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHL----EELDLGQNRISRIDQA 249
+ S F L +L ++L N+++ + L LD+ N I I
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ 199
Query: 250 CFEGLTALRILYLDDNQLRSVPTPSFIY-LGMLAELR------VGLNVFTTLADGAFNGL 302
F+G+ L L L N S + + L L R GL
Sbjct: 200 AFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258
Query: 303 GRLSALDLRGAGLT 316
++ + R
Sbjct: 259 CDVTIDEFRLTYTN 272
Score = 106 bits (266), Expect = 2e-25
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 2/138 (1%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNHN 193
+ L + Y K D +SL + ++ N + + F L L L+
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
+L ++ F L L++LN+ N L L + L L LD NRI
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543
Query: 254 LTALRILYLDDNQLRSVP 271
+L L +N + +
Sbjct: 544 PKSLAFFNLTNNSVACIC 561
Score = 102 bits (255), Expect = 4e-24
Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 28/194 (14%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFE--PQE 183
L P P ++ L L N+ ++ SL ++DLS N L +
Sbjct: 318 QLKQFPTLDLPFLKSLTLTMNKG-SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376
Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR-LFAPLSHLEELDLGQNR 242
L L L+ N ++ F+GL+ L+ L+ + + L+ + + F L L LD+
Sbjct: 377 SLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435
Query: 243 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 302
F GLT+L L + N + F
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS-----------------------NVFANT 472
Query: 303 GRLSALDLRGAGLT 316
L+ LDL L
Sbjct: 473 TNLTFLDLSKCQLE 486
Score = 93.2 bits (232), Expect = 4e-21
Identities = 37/187 (19%), Positives = 62/187 (33%), Gaps = 12/187 (6%)
Query: 135 NPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
+ +I L Y + D +++ + L+ + + K L +
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF--KWQSLSIIRC 317
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE- 252
+L + L LK L L N L L LDL +N +S +
Sbjct: 318 QLKQF---PTLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSD 372
Query: 253 -GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDL 310
G +LR L L N + +F+ L L L + + + AF L +L LD+
Sbjct: 373 LGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431
Query: 311 RGAGLTN 317
Sbjct: 432 SYTNTKI 438
Score = 88.6 bits (220), Expect = 1e-19
Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 10/161 (6%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFL 219
++ L++ + I F + + L + + + + L++ L
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK--HFKWQSLSIIRCQL 319
Query: 220 EDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG 279
+ P L L+ L L N+ S + L +L L L N L S+ LG
Sbjct: 320 KQFP---TLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLG 374
Query: 280 M--LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
L L + N + F GL L LD + + L +
Sbjct: 375 TNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRV 414
Score = 76.6 bits (189), Expect = 1e-15
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
L +PD + S + +DL N + + F + L+ L L ++ +
Sbjct: 14 ITYQCMDQKLSKVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70
Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
+ ++ L L+ L + N + + G+F+GL L L L ++
Sbjct: 71 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 144 bits (366), Expect = 2e-41
Identities = 57/213 (26%), Positives = 86/213 (40%), Gaps = 7/213 (3%)
Query: 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHN 169
C + C E N IP L S + L L +N ++ + S + + LQ +DLS
Sbjct: 3 CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 170 QLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP 229
++ I ++ L L L N + S+ F GL SL+ L L L +
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 230 LSHLEELDLGQNRISRIDQA-CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 288
L L+EL++ N I F LT L L L N+++S+ L + L + L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 289 ----NVFTTLADGAFNGLGRLSALDLRGAGLTN 317
N + GAF + RL L L L +
Sbjct: 183 DLSLNPMNFIQPGAFKEI-RLKELALDTNQLKS 214
Score = 103 bits (259), Expect = 5e-26
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 9/161 (5%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
+ L+L N I+++ F SSLQ + L ++ + L EL + HN
Sbjct: 76 SHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 194 KLSSV-NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLE----ELDLGQNRISRIDQ 248
+ S + F L +L+ L+L N ++ + L + LDL N ++ I
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 249 ACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
F+ + L+ L LD NQL+SVP F L L ++ + N
Sbjct: 195 GAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 43.0 bits (102), Expect = 6e-05
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 134 LNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
+ L L N + + L+ + L NQL ++P F+ L ++ L+ N
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 149 bits (379), Expect = 4e-41
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 7/212 (3%)
Query: 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHN 169
C + C E N IP L S + L L +N ++ + + + LQ +DLS
Sbjct: 3 CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 170 QLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP 229
++ I ++ L L L N + S+ F GL SL+ L L L +
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 230 LSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVPTPSFIYLGML----AEL 284
L L+EL++ N I F LT L L L N+++S+ L + L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 285 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
+ LN + GAF + RL L LR +
Sbjct: 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDS 213
Score = 128 bits (323), Expect = 2e-33
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 2/157 (1%)
Query: 135 NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNHN 193
S++ L L +N + T+ S L+H+D H+ L + F L+ L ++H
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFL-EDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
N F GL SL+VL + GN E+ +F L +L LDL Q ++ ++ F
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
L++L++L + NQL+SVP F L L ++ + N
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 123 bits (311), Expect = 1e-31
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 6/182 (3%)
Query: 136 PSIQRLVLKYNRIKTVD---SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
PS++ L L N + + +SL+++DLS N ++ + F E+L L H
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQH 405
Query: 193 NKLSSVNN-KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR-IDQAC 250
+ L ++ F+ L++L L++ + +F LS LE L + N
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
F L L L L QL + +F L L L + N ++ DG F+ L L + L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525
Query: 311 RG 312
Sbjct: 526 HT 527
Score = 107 bits (269), Expect = 4e-26
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
++ L +++ +K + F +L ++D+SH F L L++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 194 KL-SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
+ F L++L L+L LE L F LS L+ L++ N++ + F+
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515
Query: 253 GLTALRILYLDDNQL 267
LT+L+ ++L N
Sbjct: 516 RLTSLQKIWLHTNPW 530
Score = 104 bits (260), Expect = 7e-25
Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 10/186 (5%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
++ L I+ V + QH++L + + P + L L NK
Sbjct: 282 TNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKG 337
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLE--DLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
+ + + L SL+ L+L N L + + L+ LDL N + + F G
Sbjct: 338 GNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG 394
Query: 254 LTALRILYLDDNQLRSVPTPS-FIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
L L L + L+ + S F+ L L L + +G FNGL L L + G
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 313 AGLTNM 318
Sbjct: 455 NSFQEN 460
Score = 103 bits (259), Expect = 1e-24
Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 14/195 (7%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
+ L+L N I+++ A SSLQ + L ++ + L EL + HN
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 195 LSSVN-NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLE----ELDLGQNRISRIDQA 249
+ S + F L +L+ L+L N ++ + L + LDL N ++ I
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195
Query: 250 CFEGLTALRILYLDDNQLR-SVPTPSFIYLGMLAELRVGLNVF------TTLADGAFNGL 302
F+ + L L L +N +V L L R+ L F A GL
Sbjct: 196 AFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Query: 303 GRLSALDLRGAGLTN 317
L+ + R A L
Sbjct: 255 CNLTIEEFRLAYLDY 269
Score = 87.1 bits (216), Expect = 4e-19
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNHN 193
++ L + + + + SSL+ + ++ N + F L L L+
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
+L ++ F L SL+VLN+ N L+ +PD +F L+ L+++ L N
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 73.6 bits (181), Expect = 1e-14
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
+PD L + LDL N + + F L++L L ++++
Sbjct: 10 ITYQCMELNFYKIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
+ ++ L L+ L + N +LA GAF+GL L L L ++
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 143 bits (362), Expect = 2e-40
Identities = 57/242 (23%), Positives = 93/242 (38%), Gaps = 35/242 (14%)
Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV----------- 151
CP C C+ V C + L+ +P L P L L+ N+I +
Sbjct: 21 MGPVCPFRCQCHLRV--VQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNL 78
Query: 152 --------------DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSS 197
A L+ + LS NQL +P + + L EL+++ N+++
Sbjct: 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK---TLQELRVHENEITK 135
Query: 198 VNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
V F GL + V+ L N L+ + + F + L + + I+ I Q LT
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 195
Query: 256 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315
L+LD N++ V S L LA+L + N + + +G+ L L L L
Sbjct: 196 ---ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 316 TN 317
Sbjct: 253 VK 254
Score = 126 bits (318), Expect = 6e-34
Identities = 37/188 (19%), Positives = 77/188 (40%), Gaps = 15/188 (7%)
Query: 136 PSIQRLVLKYNRIKTV---DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
+ + L N +K+ + A Q L ++ ++ + IP L EL L+
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDG 201
Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
NK++ V+ + GL +L L L N + + + A HL EL L N++ ++
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LA 260
Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGM------LAELRVGLN--VFTTLADGAFNGLGR 304
++++YL +N + ++ + F G + + + N + + F +
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320
Query: 305 LSALDLRG 312
+A+ L
Sbjct: 321 RAAVQLGN 328
Score = 105 bits (263), Expect = 4e-26
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 10/149 (6%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184
N+ IP L PS+ L L N+I VD+ +++ ++L + LS N + +
Sbjct: 182 NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP------LSHLEELDL 238
L EL LN+NKL V K ++V+ L N + + F P + + L
Sbjct: 242 LRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300
Query: 239 GQNRI--SRIDQACFEGLTALRILYLDDN 265
N + I + F + + L +
Sbjct: 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 81.6 bits (202), Expect = 1e-17
Identities = 23/116 (19%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
++ +L L +N I VD+ ++ L+ + L++N+LV +P G + + + L++N
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNN 274
Query: 195 LSSVNNKTFI------GLKSLKVLNLRGNFLE--DLPDRLFAPLSHLEELDLGQNR 242
+S++ + F S ++L N ++ ++ F + + LG +
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 142 bits (359), Expect = 1e-39
Identities = 47/217 (21%), Positives = 90/217 (41%), Gaps = 8/217 (3%)
Query: 107 CP-PDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHV 164
C C C++ C+E+ + IP L + L +++ + A + L+ +
Sbjct: 2 CHHRICHCSNRV--FLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKI 59
Query: 165 DLSHNQLV-NIPIRGFEPQEKLVELQLNH-NKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
++S N ++ I F KL E+++ N L +N + F L +L+ L + ++ L
Sbjct: 60 EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119
Query: 223 PDRLFAPLSHLEELDLGQN-RISRIDQACFEGLTA-LRILYLDDNQLRSVPTPSFIYLGM 280
PD LD+ N I I++ F GL+ IL+L+ N ++ + +F +
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179
Query: 281 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
N L + F+G LD+ + +
Sbjct: 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216
Score = 100 bits (251), Expect = 2e-24
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHN-QLVNIPIRGFEP-QEKLVELQLNH 192
P++Q L++ IK + D +D+ N + I F + V L LN
Sbjct: 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163
Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
N + ++N F G + ++ N LE+LP+ +F S LD+ + RI + E
Sbjct: 164 NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223
Query: 253 GLTALRILYLDDNQLRSVPTPS 274
L LR L+ +PT
Sbjct: 224 NLKKLRARST--YNLKKLPTLE 243
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 144 bits (365), Expect = 4e-39
Identities = 57/229 (24%), Positives = 100/229 (43%), Gaps = 10/229 (4%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVD 165
C C+ + + IP L +++ L L +N+I + ++ ++LQ +
Sbjct: 4 CDASGVCD-------GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLI 56
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
L +++ I F L L L+ N LSS+++ F L SLK LNL GN + L
Sbjct: 57 LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116
Query: 226 -LFAPLSHLEELDLG-QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
LF L++L+ L +G S I + F GLT+L L + LR+ + S + +
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176
Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332
L + L+ L + + L + L+LR L + + + +
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225
Score = 112 bits (282), Expect = 9e-28
Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 3/179 (1%)
Query: 135 NPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNH 192
S++ L L N + ++ S SSL++++L N + + F L L++ +
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132
Query: 193 -NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF 251
S + F GL SL L ++ L + + + + L L + + + +
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192
Query: 252 EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
+ L+++R L L D L + + ++ + L D +FN L +L L
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251
Score = 104 bits (261), Expect = 5e-25
Identities = 39/183 (21%), Positives = 75/183 (40%), Gaps = 16/183 (8%)
Query: 136 PSIQRLVLKYNRIKTV----DSAIQFYSSLQHVDLSHNQLVNIPIRG--FEPQEKLVELQ 189
S++ L L N + + + SLQ + LS N L ++ G + L L
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393
Query: 190 LNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQA 249
++ N + + + + ++ LNL + + + LE LD+ N +
Sbjct: 394 ISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSFS-- 447
Query: 250 CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALD 309
L L+ LY+ N+L+++P S +L +++ N ++ DG F+ L L +
Sbjct: 448 --LFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503
Query: 310 LRG 312
L
Sbjct: 504 LHT 506
Score = 99.8 bits (249), Expect = 2e-23
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 13/157 (8%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQF---YSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
PS+Q LVL N ++++ + +L +D+S N +P + EK+ L L+
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSS 419
Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
+ V ++L+VL++ N L+ L L+EL + +N++ + A
Sbjct: 420 TGIRVVKTCIP---QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDASL- 471
Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
L ++ + NQL+SVP F L L ++ + N
Sbjct: 472 -FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 94.8 bits (236), Expect = 1e-21
Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 4/174 (2%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSH-NQLVNIPIRGFEPQEKLVELQLNH 192
S++ L L N +T+ F ++LQ + + + I F L EL++
Sbjct: 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157
Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
L + +++ ++ + L L + L + LS + L+L ++R +
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217
Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 306
+ + + SF L L + L+ D NGLG +
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV-EFDDCTLNGLGDFN 270
Score = 84.4 bits (209), Expect = 3e-18
Identities = 26/231 (11%), Positives = 69/231 (29%), Gaps = 48/231 (20%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQ----- 189
I L L + + + SS+++++L L E ++
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231
Query: 190 -------------------------------------LNHNKLSSVNNKTFIGLKSLKVL 212
N ++ V+ + +++ L
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291
Query: 213 NLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT 272
++ +L +++ L ++ + + +++ + + + L +L L L +N +
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351
Query: 273 PSFIYLGMLAELRV---GLNVFTTL--ADGAFNGLGRLSALDLRGAGLTNM 318
+ G L+ N ++ L L++LD+ M
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402
Score = 77.8 bits (192), Expect = 5e-16
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
++ L L I+ V + I +L+ +D+S+N L + + +L EL ++ NKL
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSLFL----PRLQELYISRNKL 463
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
++ + + L V+ + N L+ +PD +F L+ L+++ L N
Sbjct: 464 KTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Score = 30.8 bits (70), Expect = 0.64
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 131 PITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLV 172
+L P + + + N++K+V +SLQ + L N
Sbjct: 468 DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 139 bits (353), Expect = 6e-39
Identities = 59/249 (23%), Positives = 98/249 (39%), Gaps = 36/249 (14%)
Query: 96 LLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-- 153
L L SA CP C C+ V C + L +P ++P L L+ N I +
Sbjct: 16 LDSLPPTYSAMCPFGCHCHLRV--VQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDD 73
Query: 154 -----------------------AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQL 190
A LQ + +S N LV IP LVEL++
Sbjct: 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS---SLVELRI 130
Query: 191 NHNKLSSVNNKTFIGLKSLKVLNLRGNFLED--LPDRLFAPLSHLEELDLGQNRISRIDQ 248
+ N++ V F GL+++ + + GN LE+ F L L L + + +++ I +
Sbjct: 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPK 189
Query: 249 ACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSAL 308
L L+LD N+++++ + L L +G N + +G+ + L L L
Sbjct: 190 DLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLREL 246
Query: 309 DLRGAGLTN 317
L L+
Sbjct: 247 HLDNNKLSR 255
Score = 122 bits (308), Expect = 2e-32
Identities = 37/185 (20%), Positives = 72/185 (38%), Gaps = 14/185 (7%)
Query: 136 PSIQRLVLKYNRIK--TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
++ + + N ++ + L ++ +S +L IP E L EL L+HN
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE---TLNELHLDHN 203
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
K+ ++ + + L L L N + + + + L L EL L N++SR+
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPD 262
Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGM------LAELRVGLN--VFTTLADGAFNGLGRL 305
L L+++YL N + V F +G + + N + + F +
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322
Query: 306 SALDL 310
A+
Sbjct: 323 LAIQF 327
Score = 118 bits (298), Expect = 4e-31
Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 16/197 (8%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPI--RGFEP 181
+L IP L S+ L + NRI+ V + F ++ +++ N L N F+
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGV-FSGLRNMNCIEMGGNPLENSGFEPGAFDG 171
Query: 182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
KL L+++ KL+ + ++L L+L N ++ + S L L LG N
Sbjct: 172 L-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227
Query: 242 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 301
+I I+ L LR L+LD+N+L VP L +L + + N T + F
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITKVGVNDFCP 286
Query: 302 LG------RLSALDLRG 312
+G + + L
Sbjct: 287 VGFGVKRAYYNGISLFN 303
Score = 103 bits (258), Expect = 2e-25
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 10/150 (6%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184
L IP L ++ L L +N+I+ + + YS L + L HNQ+ I
Sbjct: 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242
Query: 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPL------SHLEELDL 238
L EL L++NKLS V LK L+V+ L N + + F P+ ++ + L
Sbjct: 243 LRELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301
Query: 239 GQNRIS--RIDQACFEGLTALRILYLDDNQ 266
N + + A F +T + + +
Sbjct: 302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 136 bits (343), Expect = 5e-38
Identities = 54/207 (26%), Positives = 77/207 (37%), Gaps = 7/207 (3%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAI-QFYSSLQHVD 165
C + V C + NL +P L L L N + T A Y+ L ++
Sbjct: 4 CEVSKVASHLE--VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
L +L + + L L L+HN+L S+ L +L VL++ N L LP
Sbjct: 62 LDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLG 118
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
L L+EL L N + + L L L +N L +P L L L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLRG 312
+ N T+ G F G L L G
Sbjct: 179 LQENSLYTIPKGFF-GSHLLPFAFLHG 204
Score = 104 bits (261), Expect = 3e-26
Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 6/158 (3%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
+S V+ L +P + L L+ N L + + T + L LNL
Sbjct: 10 ASHLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Query: 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 278
L L + L L LDL N++ + + L AL +L + N+L S+P + L
Sbjct: 67 LTKLQ--VDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 279 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
G L EL + N TL G +L L L LT
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 35.9 bits (83), Expect = 0.012
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 249 AC-FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
C + + + D L ++P L + N+ T + RL+
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQ 59
Query: 308 LDLRGAGLTN 317
L+L A LT
Sbjct: 60 LNLDRAELTK 69
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 129 bits (327), Expect = 2e-36
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 4/167 (2%)
Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQF--YSS 160
S CP C C T V C L+ IP + L L N +++ F
Sbjct: 1 GSLACPEKCRCEGTT--VDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQ 58
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
L+ ++ S+N++ +I FE + E+ L N+L +V +K F GL+SLK L LR N +
Sbjct: 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
+ + F LS + L L N+I+ + F+ L +L L L N
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
Score = 80.5 bits (199), Expect = 4e-18
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Query: 208 SLKVLNLRGNFLEDLPDR-LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ 266
L L N L +F L L +++ N+I+ I++ FEG + + + L N+
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 267 LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
L +V F L L L + N T + + +F GL + L L
Sbjct: 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 136 bits (345), Expect = 3e-36
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 7/212 (3%)
Query: 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHN 169
C + C E N IP L S + L L +N ++ + + + LQ +DLS
Sbjct: 3 CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 170 QLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP 229
++ I ++ L L L N + S+ F GL SL+ L L L +
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 230 LSHLEELDLGQNRISRID-QACFEGLTALRILYLDDNQLRSVPTPSFIYLGML----AEL 284
L L+EL++ N I F LT L L L N+++S+ L + L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 285 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
+ LN + GAF + RL L LR +
Sbjct: 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDS 213
Score = 118 bits (298), Expect = 9e-30
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 3/180 (1%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNHNK 194
S++ L L +N + T+ S L+H+D H+ L + F L+ L ++H
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 195 LSSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
N F GL SL+VL + GN F E+ +F L +L LDL Q ++ ++ F
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR-LSALDLRG 312
L++L++L + N S+ T + L L L LN T L+ L+L
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
Score = 99.7 bits (249), Expect = 2e-23
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLV-NIPIRGFEPQEKLVELQLNHN 193
++ L + + + + SSL+ + ++ N N F L L L+
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
+L ++ F L SL+VLN+ N L + L+ L+ LD N I + +
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540
Query: 254 L-TALRILYLDDNQL 267
++L L L N
Sbjct: 541 FPSSLAFLNLTQNDF 555
Score = 95.1 bits (237), Expect = 8e-22
Identities = 44/204 (21%), Positives = 68/204 (33%), Gaps = 25/204 (12%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP-------------------I 176
++ L I+ V + QH++L + + P
Sbjct: 282 TNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340
Query: 177 RGFEPQEKLVELQLNHNKLS--SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
L L L+ N LS +++ G SLK L+L N + + F L LE
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE 399
Query: 235 ELDLGQNRISR-IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT- 292
LD + + + + + F L L L + R F L L L++ N F
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
Query: 293 TLADGAFNGLGRLSALDLRGAGLT 316
F L L+ LDL L
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLE 483
Score = 90.9 bits (226), Expect = 2e-20
Identities = 39/194 (20%), Positives = 74/194 (38%), Gaps = 17/194 (8%)
Query: 135 NPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPI-RGFEPQEKLVELQLNH 192
S+Q+LV + ++ + I +L+ ++++HN + + + F L L L+
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 193 NKLSSVNNKTFIGLKSLKV----LNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS-RID 247
NK+ S+ L + + L+L N + + F + L +L L N S +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVM 217
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR---------VGLNVFTTLADGA 298
+ C +GL L + L + R+ L L L+ +
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277
Query: 299 FNGLGRLSALDLRG 312
FN L +S+ L
Sbjct: 278 FNCLTNVSSFSLVS 291
Score = 78.5 bits (194), Expect = 3e-16
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
S++ L + N + F +L +DLS QL + F L L ++HN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPL-SHLEELDLGQNRIS 244
S++ + L SL+VL+ N + + S L L+L QN +
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 77.0 bits (190), Expect = 9e-16
Identities = 34/187 (18%), Positives = 57/187 (30%), Gaps = 17/187 (9%)
Query: 134 LNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQL-VNIPIRGFEPQEKLVELQLNH 192
+ L L N + + L + L +N +N+ + L +L
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234
Query: 193 NKLSSVNN------KTFIGLKSLKVLNLRGNFLEDLPDR---LFAPLSHLEELDLGQNRI 243
+ + N GL +L + R +L+ D LF L+++ L I
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294
Query: 244 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG 303
R+ F + L L + + PT L L + L
Sbjct: 295 ERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLP 347
Query: 304 RLSALDL 310
L LDL
Sbjct: 348 SLEFLDL 354
Score = 66.2 bits (162), Expect = 3e-12
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
+PD L + LDL N + + F L++L L ++++
Sbjct: 10 ITYQCMELNFYKIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM 323
+ ++ L L+ L + N +LA GAF+GL L L L ++ +
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 134 bits (338), Expect = 6e-36
Identities = 47/225 (20%), Positives = 79/225 (35%), Gaps = 18/225 (8%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVD 165
+C C L +P L + + L N I ++ + LQ +
Sbjct: 4 GTSECSVI--GYNAICINRGLHQVP-ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLK 60
Query: 166 LSHNQL-VNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED--L 222
+ + I F L+ L+L++N+ + F GL +L+VL L L+ L
Sbjct: 61 VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVL 120
Query: 223 PDRLFAPLSHLEELDLGQNRISRID-QACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
F PL+ LE L L N I +I + F + +L L N+++S+ +
Sbjct: 121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180
Query: 282 AELRVGL----------NVFTTLADGAFNGLGRLSALDLRGAGLT 316
+ L G ++ LDL G G
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225
Score = 121 bits (304), Expect = 4e-31
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 2/150 (1%)
Query: 165 DLSHNQLVNIPIRGFE--PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
H + F+ + L+ +K+ ++ F L+ L L N + +
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314
Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282
D F L+HL +L+L QN + ID FE L L +L L N +R++ SF+ L L
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374
Query: 283 ELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
EL + N ++ DG F+ L L + L
Sbjct: 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404
Score = 119 bits (300), Expect = 1e-30
Identities = 46/131 (35%), Positives = 67/131 (51%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
S ++ DLS +++ + F L +L L N+++ +++ F GL L LNL NF
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 278
L + R+F L LE LDL N I + F GL L+ L LD NQL+SVP F L
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394
Query: 279 GMLAELRVGLN 289
L ++ + N
Sbjct: 395 TSLQKIWLHTN 405
Score = 100 bits (252), Expect = 5e-24
Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 27/208 (12%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYS--SLQHVDLSHNQLVNIPIRGFE--PQEKLVELQLN 191
S++ LVL+ N IK + A F + +DL+ N++ +I + L+L+
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188
Query: 192 HNKLSSVNN--------KTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEEL------- 236
L +N S+ L+L GN ++ + F ++
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248
Query: 237 ------DLGQNRISRIDQACFEGL--TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 288
G D F+GL + ++ L +++ ++ F + L +L +
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308
Query: 289 NVFTTLADGAFNGLGRLSALDLRGAGLT 316
N + D AF GL L L+L L
Sbjct: 309 NEINKIDDNAFWGLTHLLKLNLSQNFLG 336
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 123 bits (311), Expect = 4e-34
Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 25/187 (13%)
Query: 103 ASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQ 162
S CP C C++ V C+ L IP L +I + L+ N IK
Sbjct: 1 GSLHCPAACTCSNNI--VDCRGKGLTEIPTNLPETITEIRLEQNTIKV------------ 46
Query: 163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
IP F P +KL + L++N++S + F GL+SL L L GN + +L
Sbjct: 47 -----------IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 282
P LF L L+ L L N+I+ + F+ L L +L L DN+L+++ +F L +
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 283 ELRVGLN 289
+ + N
Sbjct: 156 TMHLAQN 162
Score = 82.4 bits (204), Expect = 1e-18
Identities = 32/109 (29%), Positives = 49/109 (44%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
++ + L N ++ +P F+P L +DL N+IS + F+GL +L L L N++
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
+P F L L L + N L AF L L+ L L L
Sbjct: 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 127 bits (320), Expect = 7e-34
Identities = 33/199 (16%), Positives = 73/199 (36%), Gaps = 17/199 (8%)
Query: 109 PDCDCNDETLVV--TCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
P+ C D L + ++D+ + + + L ++ + V
Sbjct: 8 PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL---------------NNQKIVTF 52
Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
++ + +P + ++ L LN ++ ++ F +++ L + N + LP +
Sbjct: 53 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112
Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 286
F + L L L +N +S + + F L L + +N L + +F L L++
Sbjct: 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172
Query: 287 GLNVFTTLADGAFNGLGRL 305
N T + L
Sbjct: 173 SSNRLTHVDLSLIPSLFHA 191
Score = 119 bits (300), Expect = 6e-31
Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 11/180 (6%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
L + ++L PS+ + YN + T+ I +++ +D SHN + + +L
Sbjct: 176 RLTHVDLSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPVN---VEL 228
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
L+L HN L+ + L ++L N LE + F + LE L + NR+
Sbjct: 229 TILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286
Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305
++ + + L++L L N L V + L L + N TL + L L
Sbjct: 287 LNLY-GQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 344
Score = 112 bits (281), Expect = 3e-28
Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 14/177 (7%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
S+Q L L NR+ VD ++ SL H ++S+N L + + EL +HN +
Sbjct: 165 TSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSI 217
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
+ V L +L L+ N L D L E+DL N + +I F +
Sbjct: 218 NVVRGPVN---VELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272
Query: 256 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
L LY+ +N+L ++ + L L + N + RL L L
Sbjct: 273 RLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDH 327
Score = 110 bits (278), Expect = 8e-28
Identities = 46/183 (25%), Positives = 69/183 (37%), Gaps = 14/183 (7%)
Query: 136 PSIQRLVLKYNRIKTVDSAI-QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
P + LVL+ N + ++ I L + +S+N L I F+ L LQL+ N+
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
L+ V+ SL N+ N L L +EELD N I+ + L
Sbjct: 177 LTHVDLSLI---PSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVEL 228
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 314
T IL L N L + L E+ + N + F + RL L +
Sbjct: 229 T---ILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 315 LTN 317
L
Sbjct: 284 LVA 286
Score = 102 bits (257), Expect = 5e-25
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 6/143 (4%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
+++V+ +N + L L++N + + + Y L VDLS+N+L I F ++L
Sbjct: 216 SINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
L +++N+L ++N + +LKVL+L N L + LE L L N I
Sbjct: 275 ERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVT 332
Query: 246 IDQACFEGLTALRILYLDDNQLR 268
+ L+ L L N
Sbjct: 333 LK---LSTHHTLKNLTLSHNDWD 352
Score = 50.4 bits (121), Expect = 3e-07
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 126 NLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE 183
L + + P+++ L L +N + V+ + L+++ L HN +V + +
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH---H 339
Query: 184 KLVELQLNHNKLSSVNNKT-FIGLKSLKVLNL 214
L L L+HN + + F + V +
Sbjct: 340 TLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 128 bits (323), Expect = 3e-33
Identities = 30/195 (15%), Positives = 71/195 (36%), Gaps = 15/195 (7%)
Query: 111 CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQ 170
C ++ + ++D+ + + + L ++ + V ++
Sbjct: 18 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL---------------NNQKIVTFKNST 62
Query: 171 LVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPL 230
+ +P + ++ L LN ++ ++ F +++ L + N + LP +F +
Sbjct: 63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122
Query: 231 SHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV 290
L L L +N +S + + F L L + +N L + +F L L++ N
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182
Query: 291 FTTLADGAFNGLGRL 305
T + L
Sbjct: 183 LTHVDLSLIPSLFHA 197
Score = 120 bits (302), Expect = 2e-30
Identities = 32/166 (19%), Positives = 60/166 (36%)
Query: 147 RIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGL 206
K +DS +Q+ V + + ++ + +
Sbjct: 15 EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 74
Query: 207 KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ 266
+ +++LNL +E++ FA +++L +G N I + F+ + L +L L+ N
Sbjct: 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134
Query: 267 LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
L S+P F L L + N + D F L L L
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180
Score = 118 bits (297), Expect = 8e-30
Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 11/180 (6%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
L + ++L PS+ + YN + T+ I +++ +D SHN + + +L
Sbjct: 182 RLTHVDLSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPVN---VEL 234
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
L+L HN L+ + L ++L N LE + F + LE L + NR+
Sbjct: 235 TILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292
Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305
++ + + L++L L N L V + L L + N TL + L L
Sbjct: 293 LNLY-GQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 350
Score = 111 bits (279), Expect = 2e-27
Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 14/183 (7%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
S+Q L L NR+ VD + SL H ++S+N L + + EL +HN +
Sbjct: 171 TSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSI 223
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
+ V L +L L+ N L D L E+DL N + +I F +
Sbjct: 224 NVVRGPVN---VELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278
Query: 256 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315
L LY+ +N+L ++ + L L + N + RL L L +
Sbjct: 279 RLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSI 336
Query: 316 TNM 318
+
Sbjct: 337 VTL 339
Score = 109 bits (273), Expect = 1e-26
Identities = 46/184 (25%), Positives = 70/184 (38%), Gaps = 14/184 (7%)
Query: 136 PSIQRLVLKYNRIKTVDSAI-QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
P + LVL+ N + ++ I L + +S+N L I F+ L LQL+ N+
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
L+ V+ SL N+ N L L +EELD N I+ + L
Sbjct: 183 LTHVDLSLI---PSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVEL 234
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 314
T IL L N L + L E+ + N + F + RL L +
Sbjct: 235 T---ILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289
Query: 315 LTNM 318
L +
Sbjct: 290 LVAL 293
Score = 54.5 bits (131), Expect = 2e-08
Identities = 25/177 (14%), Positives = 55/177 (31%), Gaps = 13/177 (7%)
Query: 126 NLDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE 183
L + + P+++ L L +N + V+ + L+++ L HN +V + +
Sbjct: 289 RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH---H 345
Query: 184 KLVELQLNHNKLSSVNNKT-FIGLKSLKVLNLRGNFLEDLP-------DRLFAPLSHLEE 235
L L L+HN + + F + V + + D P
Sbjct: 346 TLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLL 405
Query: 236 LDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
+ + Q +A + + + + L +L +N
Sbjct: 406 QYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELR 462
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 127 bits (320), Expect = 1e-32
Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 12/205 (5%)
Query: 125 ANLDVIPITLNPSIQRLVLKYNRIKTVDSAI---QFYSSLQHVDLSHNQLVNIPIRGFEP 181
+ + L I ++ IK D SS++H+DLSH + ++ R FE
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288
Query: 182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
+ L L L +NK++ + ++ F GL +L+VLNL N L +L F L + +DL +N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 242 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 301
I+ I F+ L L+ L L DN L ++ ++ + ++ + N TL
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLT- 402
Query: 302 LGRLSALDLRGAGLTNMMGHSMALG 326
+ + L L N+ L
Sbjct: 403 ---ANLIHLSENRLENLDILYFLLR 424
Score = 111 bits (278), Expect = 4e-27
Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 39/237 (16%)
Query: 113 CNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS------------------- 153
C+ + + + NL +P L + +RL+L +N I+TV +
Sbjct: 2 CSFDGRIAFYRFCNLTQVPQVL-NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60
Query: 154 -------AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSS--VNNKTFI 204
A + +L+ +DL +++ + F+ L EL+L LS + + F
Sbjct: 61 PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120
Query: 205 GLKSLKVLNLRGNFLEDLPDR-LFAPLSHLEELDLGQNRISRIDQACFEGLTA--LRILY 261
LK+L L+L N + L F L+ L+ +D N+I + + E L L
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 262 LDDNQLRSVPTPSFIYLGM------LAELRVGLNVFTTLADGAF-NGLGRLSALDLR 311
L N L S + + L L V N +T G F N + + A L
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237
Score = 106 bits (267), Expect = 1e-25
Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 12/178 (6%)
Query: 132 ITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQ-EKLVELQL 190
I PSI + L N++ T+ + + LS N+L N+ I F + L L L
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPK---INLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433
Query: 191 NHNKLSSV-NNKTFIGLKSLKVLNLRGNFLED-----LPDRLFAPLSHLEELDLGQNRIS 244
N N+ SS ++T SL+ L L N L+ L +F LSHL+ L L N ++
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493
Query: 245 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 302
+ F LTALR L L+ N+L + L L + N F L
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSL 549
Score = 102 bits (256), Expect = 3e-24
Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 8/164 (4%)
Query: 158 YSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
+ L +P + L L+ N + +V +F L+ L++L L
Sbjct: 3 SFDGRIAFYRFCNLTQVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58
Query: 218 FLE-DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS--VPTPS 274
+ + F L +L LDLG ++I + F+GL L L L L +
Sbjct: 59 YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118
Query: 275 FIYLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLRGAGLTN 317
F L L L + N +L +F L L ++D +
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162
Score = 101 bits (253), Expect = 7e-24
Identities = 49/190 (25%), Positives = 76/190 (40%), Gaps = 17/190 (8%)
Query: 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
P + + L+ N I + +F LQ +DL N L I + ++ L+ NK
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNK 392
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLF-APLSHLEELDLGQNRISRID-QACFE 252
L ++ + +++L N LE+L F + HL+ L L QNR S
Sbjct: 393 LVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448
Query: 253 GLTALRILYLDDNQLR-----SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
+L L+L +N L+ + F L L L + N +L G F+ L L
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508
Query: 308 LDLRGAGLTN 317
L L LT
Sbjct: 509 LSLNSNRLTV 518
Score = 99.5 bits (248), Expect = 4e-23
Identities = 41/191 (21%), Positives = 82/191 (42%), Gaps = 14/191 (7%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
++ L L YN+I + FY +LQ ++LS+N L + F K+ + L N
Sbjct: 290 KDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
++ + ++TF L+ L+ L+LR N L + + + ++ L N++ + +
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLPKINL-- 401
Query: 254 LTALRILYLDDNQLRSVPTPSFI-YLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLR 311
+++L +N+L ++ F+ + L L + N F++ D + L L L
Sbjct: 402 --TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459
Query: 312 GAGLTNMMGHS 322
L
Sbjct: 460 ENMLQLAWETE 470
Score = 93.3 bits (232), Expect = 3e-21
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 17/191 (8%)
Query: 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
++Q L L YN + + S + ++DL N + I + F+ EKL L L N
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID-QACFEG 253
L++++ + S+ + L GN L LP + L +NR+ +D
Sbjct: 374 LTTIHF-----IPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLR 424
Query: 254 LTALRILYLDDNQLRSVPTPS-FIYLGMLAELRVGLNVF-----TTLADGAFNGLGRLSA 307
+ L+IL L+ N+ S L +L +G N+ T L F GL L
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484
Query: 308 LDLRGAGLTNM 318
L L L ++
Sbjct: 485 LYLNHNYLNSL 495
Score = 82.9 bits (205), Expect = 1e-17
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 126 NLDVIPITLN-PSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQL-----VNIPIR 177
NLD++ L P +Q L+L NR + SL+ + L N L +
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474
Query: 178 GFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELD 237
FE L L LNHN L+S+ F L +L+ L+L N L L ++LE LD
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILD 532
Query: 238 LGQNRISRIDQACFEGLTALRILYLDDNQL 267
+ +N++ + + +L +L + N+
Sbjct: 533 ISRNQLLAPNP---DVFVSLSVLDITHNKF 559
Score = 72.5 bits (178), Expect = 4e-14
Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 29/139 (20%)
Query: 190 LNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR-IDQ 248
L+ V L + + L L N++ + F L L+ L+LG ID+
Sbjct: 11 YRFCNLTQV----PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66
Query: 249 ACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSAL 308
F L LRIL L +++ + AF GL L L
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLH------------------------PDAFQGLFHLFEL 102
Query: 309 DLRGAGLTNMMGHSMALGD 327
L GL++ + +
Sbjct: 103 RLYFCGLSDAVLKDGYFRN 121
Score = 66.0 bits (161), Expect = 4e-12
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 133 TLNPSIQRLVLKYNRIKTVD------SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLV 186
+ NPS+++L L N ++ + S LQ + L+HN L ++P F L
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507
Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
L LN N+L+ +++ +L++L++ N L +F L LD+ N+
Sbjct: 508 GLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFI 560
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 124 bits (314), Expect = 7e-32
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 4/178 (2%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
S + + ++ V + +++ ++L+HNQL +P F +L L + N +S
Sbjct: 5 SHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA 256
+ + L LKVLNL+ N L L D+ FA ++L EL L N I +I F
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122
Query: 257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG--RLSALDLRG 312
L L L N L S + + L L EL + N L + L L+L
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Score = 119 bits (301), Expect = 4e-30
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 8/189 (4%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
P ++ L L++N + + D F ++L + L N + I F Q+ L+ L L+HN
Sbjct: 73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFA--PLSHLEELDLGQNRISRIDQACFE 252
LSS T + L++L+ L L N ++ L S L++L+L N+I CF
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192
Query: 253 GLTALRILYLDDNQLRSVPTPSF---IYLGMLAELRVGLNVFTTLADGAFNGLG--RLSA 307
+ L L+L++ QL T + + L + + +T ++ F GL L+
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252
Query: 308 LDLRGAGLT 316
LDL L
Sbjct: 253 LDLSYNNLN 261
Score = 117 bits (295), Expect = 2e-29
Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 8/191 (4%)
Query: 136 PSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHN--QLVNIPIRGFE--PQEKLVELQL 190
++ L ++ N I + + +L+++ LS++ L + F L L L
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388
Query: 191 NHNKLSSVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAPLSHLEELDLGQNRISRIDQA 249
NK+S + + F L L+VL+L N + +L + + L ++ E+ L N+ ++ +
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448
Query: 250 CFEGLTALRILYLDDNQLRSVP--TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
F + +L+ L L L++V F L L L + N + D GL +L
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508
Query: 308 LDLRGAGLTNM 318
LDL+ L +
Sbjct: 509 LDLQHNNLARL 519
Score = 116 bits (292), Expect = 6e-29
Identities = 52/193 (26%), Positives = 80/193 (41%), Gaps = 15/193 (7%)
Query: 135 NPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE---KLVELQL 190
N S+++L L N+IK L + L++ QL + + L L
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229
Query: 191 NHNKLSSVNNKTFIGLK--SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ 248
++++LS+ +N TF+GLK +L +L+L N L + + FA L LE L N I +
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289
Query: 249 ACFEGLTALRILYLDDN---------QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 299
GL +R L L + L + SF +L L L + N + F
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349
Query: 300 NGLGRLSALDLRG 312
GL L L L
Sbjct: 350 TGLINLKYLSLSN 362
Score = 115 bits (291), Expect = 9e-29
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 12/189 (6%)
Query: 136 PSIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRG--FEPQEKLVELQLNH 192
+I + L YN+ + + SLQ + L L N+ F+P L L L++
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489
Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDL--------PDRLFAPLSHLEELDLGQNRIS 244
N ++++N+ GL+ L++L+L+ N L L P LSHL L+L N
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549
Query: 245 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF-NGLG 303
I F+ L L+I+ L N L ++P F L L + N+ T++ F
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609
Query: 304 RLSALDLRG 312
L+ LD+R
Sbjct: 610 NLTELDMRF 618
Score = 112 bits (283), Expect = 9e-28
Identities = 55/170 (32%), Positives = 80/170 (47%), Gaps = 12/170 (7%)
Query: 135 NPSIQRLVLKYNRIKTVD---SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191
PS+QRL+L+ +K VD S Q +L +DLS+N + NI E EKL L L
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512
Query: 192 HNKLSSVNNKTFIG--------LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
HN L+ + G L L +LNL N +++P +F L L+ +DLG N +
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572
Query: 244 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY-LGMLAELRVGLNVFT 292
+ + + F +L+ L L N + SV F L EL + N F
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
Score = 112 bits (283), Expect = 1e-27
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 8/190 (4%)
Query: 136 PSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
++ L L N I+ + + +L +DLSHN L + + E L EL L++NK
Sbjct: 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156
Query: 195 LSSVNNKTF--IGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQA--- 249
+ ++ ++ SLK L L N +++ F + L L L ++
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216
Query: 250 CFEGLTALRILYLDDNQLRSVPTPSFIYLGM--LAELRVGLNVFTTLADGAFNGLGRLSA 307
T++R L L ++QL + +F+ L L L + N + + +F L +L
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276
Query: 308 LDLRGAGLTN 317
L + +
Sbjct: 277 FFLEYNNIQH 286
Score = 107 bits (270), Expect = 4e-26
Identities = 43/193 (22%), Positives = 81/193 (41%), Gaps = 15/193 (7%)
Query: 135 NPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
++ L L YN + V + + + L++ L +N + ++ + L L +
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306
Query: 194 ---------KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
L +++ +F LK L+ LN+ N + + +F L +L+ L L + S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Query: 245 --RIDQACFEGL--TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT-LADGAF 299
+ F L + L IL L N++ + + +F +LG L L +GLN L +
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426
Query: 300 NGLGRLSALDLRG 312
GL + + L
Sbjct: 427 RGLENIFEIYLSY 439
Score = 78.9 bits (195), Expect = 2e-16
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
S +V + L +PD L +++ L+L N++ R+ A F + L L + N +
Sbjct: 5 SHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
+ L ML L + N + L+D F L+ L L +
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 118 bits (298), Expect = 8e-32
Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 3/186 (1%)
Query: 107 CPPD--CDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQH 163
C C CN+ V C+ +LD +P + ++L L+ + T+ + + L
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTW 63
Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
++L +NQL + F+ +L L L +N+L+S+ F L L L L GN L+ LP
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
+F L+ L+EL L N++ I F+ LT L+ L L NQL+SVP +F LG L
Sbjct: 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183
Query: 284 LRVGLN 289
+ + N
Sbjct: 184 ITLFGN 189
Score = 97.1 bits (242), Expect = 9e-24
Identities = 47/130 (36%), Positives = 68/130 (52%)
Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
+L L L+++++ TF GL L LNL N L+ L +F L+ L L L N+++ +
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 247 DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 306
F+ LT L LYL NQL+S+P+ F L L ELR+ N ++ GAF+ L L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 307 ALDLRGAGLT 316
L L L
Sbjct: 159 TLSLSTNQLQ 168
Score = 74.3 bits (183), Expect = 1e-15
Identities = 35/103 (33%), Positives = 52/103 (50%)
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
+ L+L+ L L D F L+ L L+L N++ + F+ LT L L L +NQL S
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
+P F +L L +L +G N +L G F+ L +L L L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 115 bits (290), Expect = 1e-30
Identities = 45/236 (19%), Positives = 83/236 (35%), Gaps = 35/236 (14%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDS-AIQFYSSLQHVD 165
P C+C+ E ++ IP +L PS Q L L ++T+ S A ++ +
Sbjct: 4 SSPPCECHQEE-DFRVTCKDIQRIP-SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIY 61
Query: 166 LSHN-QLVNIPIRGFEPQEKLVELQLNHNK-LSSVNNKTFIGLKSLKVLNLRGN------ 217
+S + L + F K+ +++ + + L+ ++ L LK L +
Sbjct: 62 VSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP 121
Query: 218 --------------------FLEDLPDRLFAPL-SHLEELDLGQNRISRIDQACFEGLTA 256
++ +P F L + L L N + + F G
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK- 180
Query: 257 LRILYLDDNQ-LRSVPTPSFIYLG-MLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
L +YL+ N+ L + +F + + L V T L L L A +
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
Score = 99.3 bits (248), Expect = 1e-24
Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 9/164 (5%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
+ ++ + IP L+L L ++ + F L ++ + + +
Sbjct: 11 HQEEDFRVTCKDIQRIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66
Query: 219 -LEDLPDRLFAPLSHLEELDLGQNR-ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFI 276
L+ L F LS + +++ R ++ ID + L L+ L + + L+ P + +
Sbjct: 67 TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126
Query: 277 Y-LGMLAELRVGLNVF-TTLADGAFNGLGRLSA-LDLRGAGLTN 317
Y + L + N + T++ AF GL + L L G T+
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170
Score = 65.4 bits (160), Expect = 1e-12
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN-Q 266
+ + ++ +P + L L + + I F L + +Y+ +
Sbjct: 12 QEEDFRVTCKDIQRIPS----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67
Query: 267 LRSVPTPSFIYLGMLAELRVGLN-VFTTLADGAFNGLGRLSALDLRGAGLTNM 318
L+ + + SF L + + + T + A L L L + GL
Sbjct: 68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF 120
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 113 bits (286), Expect = 2e-29
Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 12/184 (6%)
Query: 136 PSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
+ + + +K S Q +++ +DLS N L I P KL L L+ N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
L + L +L+ L+L N++++L +E L N ISR+ + +G
Sbjct: 70 LYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRGQG- 121
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG-LGRLSALDLRGA 313
+ +YL +N++ + + L + LN T+ L L+L+
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 314 GLTN 317
+ +
Sbjct: 180 FIYD 183
Score = 112 bits (283), Expect = 4e-29
Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 10/165 (6%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
+ + ++ + L + + EL L+ N LS ++ L++LNL N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 278
L + D LS L LDL N + + ++ L+ +N + V
Sbjct: 70 LYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQ-- 120
Query: 279 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSM 323
+ + N T L D R+ LDL+ + + +
Sbjct: 121 -GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Score = 111 bits (279), Expect = 2e-28
Identities = 35/182 (19%), Positives = 79/182 (43%), Gaps = 8/182 (4%)
Query: 132 ITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191
+ + PSI+ L N I V + +++ L++N++ + + ++ L L
Sbjct: 95 LLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152
Query: 192 HNKLSSVNNKTFIG-LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC 250
N++ +VN +L+ LNL+ NF+ D+ ++ + L+ LDL N+++ +
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE- 209
Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA-FNGLGRLSALD 309
F+ + + L +N+L + + + L + N F F+ R+ +
Sbjct: 210 FQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268
Query: 310 LR 311
+
Sbjct: 269 KQ 270
Score = 109 bits (275), Expect = 7e-28
Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 13/183 (7%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
++ L L N + ++ S+L+ +DL++N + + + L +N +
Sbjct: 58 TKLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNI 111
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID-QACFEGL 254
S V+ + K + L N + L D S ++ LDL N I ++
Sbjct: 112 SRVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 314
L L L N + V L L + N + F ++ + LR
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK 225
Query: 315 LTN 317
L
Sbjct: 226 LVL 228
Score = 109 bits (274), Expect = 9e-28
Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 14/179 (7%)
Query: 136 PSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
+++ L L N + + + + ++ L+ ++LS N L E L L LN+N
Sbjct: 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNY 91
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
+ + S++ L+ N + + + + L N+I+ +
Sbjct: 92 VQELLV-----GPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDEGCR 143
Query: 255 TALRILYLDDNQLRSVPTPSFI-YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
+ ++ L L N++ +V L L + N + +L LDL
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSS 200
Score = 106 bits (267), Expect = 1e-26
Identities = 32/176 (18%), Positives = 59/176 (33%), Gaps = 7/176 (3%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQ-E 183
N+ + + + + L N+I + D S +Q++DL N++ + +
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169
Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
L L L +N + V + LK L+L N L + F + + + L N++
Sbjct: 170 TLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL 226
Query: 244 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 299
I++A L L N F + V L
Sbjct: 227 VLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNE 280
Score = 79.6 bits (197), Expect = 4e-17
Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 7/110 (6%)
Query: 203 FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL 262
K+ + + L+ L +++ELDL N +S+I A T L +L L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 263 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
N L L L L + N L + L
Sbjct: 66 SSNVLYET--LDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN 108
Score = 62.3 bits (152), Expect = 3e-11
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
+ + + + + + + + + ++ L L N L + L L
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLRG 312
+ NV D L L LDL
Sbjct: 65 LSSNVLYETLD--LESLSTLRTLDLNN 89
Score = 60.8 bits (148), Expect = 1e-10
Identities = 20/138 (14%), Positives = 46/138 (33%), Gaps = 3/138 (2%)
Query: 126 NLDVIPITLN-PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184
+ + + ++ L L N++ + Q + + + L +N+LV I + +
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE-KALRFSQN 238
Query: 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
L L N + F K+ +V + ++ L + + G
Sbjct: 239 LEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297
Query: 245 RIDQACFEGLTALRILYL 262
+ + L AL +
Sbjct: 298 DLPAPFADRLIALGHHHH 315
Score = 44.2 bits (105), Expect = 3e-05
Identities = 10/67 (14%), Positives = 22/67 (32%)
Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
+ +I + D+ L+ + EL + N + ++ +L L+L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 311 RGAGLTN 317
L
Sbjct: 66 SSNVLYE 72
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 116 bits (292), Expect = 5e-29
Identities = 35/205 (17%), Positives = 78/205 (38%), Gaps = 19/205 (9%)
Query: 126 NLDVIPITLN----PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEP 181
NL+ P + + + L +N+++ +++ L + L +NQ+ IP
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAF 617
Query: 182 QEKLVELQLNHNKLSSVNNKTFIG-LKSLKVLNLRGNFLEDLPDRLFAPLS-----HLEE 235
+++ L +HNKL + N + + ++ N + + + +
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677
Query: 236 LDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP-------TPSFIYLGMLAELRVGL 288
+ L N I + F + + + L +N + S+P ++ +L + +
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737
Query: 289 NVFTTL-ADGAFNGLGRLSALDLRG 312
N T+L D L LS +D+
Sbjct: 738 NKLTSLSDDFRATTLPYLSNMDVSY 762
Score = 105 bits (263), Expect = 3e-25
Identities = 25/210 (11%), Positives = 65/210 (30%), Gaps = 21/210 (10%)
Query: 127 LDVIPITLN--PSIQRLVLK-YNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE 183
+ ++ + + + L + + + LQ ++++ N+ ++ +
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539
Query: 184 ---------KLVELQLNHNKLSSVNNKTFIG-LKSLKVLNLRGNFLEDLPDRLFAPLSHL 233
K+ + +N L + + L +L+ N + L F L
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKL 597
Query: 234 EELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY-LGMLAELRVGLNVFT 292
+L L N+I I + + L N+L+ +P + ++ + N
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657
Query: 293 TLADGAFNGLG-----RLSALDLRGAGLTN 317
+ + S + L +
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQK 687
Score = 98.4 bits (245), Expect = 8e-23
Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 19/195 (9%)
Query: 134 LNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
++ ++ NRI + AIQ + LQ + +++ + ++
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN-----IAVDWEDANSDYA 477
Query: 194 KLSSVNNKTFIGLKSLKVLNLRG-NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC-- 250
K ++ LK L + L + LPD L+ L L+ L++ NR Q
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKAD 536
Query: 251 -------FEGLTALRILYLDDNQLRSVPTPSFI-YLGMLAELRVGLNVFTTLADGAFNGL 302
+ ++I Y+ N L P + + + L L N L AF
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTN 594
Query: 303 GRLSALDLRGAGLTN 317
+L+ L L +
Sbjct: 595 VKLTDLKLDYNQIEE 609
Score = 92.6 bits (230), Expect = 6e-21
Identities = 37/202 (18%), Positives = 68/202 (33%), Gaps = 19/202 (9%)
Query: 137 SIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE-------KLVEL 188
+ + L YN I+ S + + LS+N + +IP +P++ L +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733
Query: 189 QLNHNKLSSV-NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDL------GQN 241
L NKL+S+ ++ L L +++ N P + S L+ + N
Sbjct: 734 DLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN-SSQLKAFGIRHQRDAEGN 792
Query: 242 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 301
RI R +L L + N +R V L L + N ++ +
Sbjct: 793 RILRQWPTGITTCPSLIQLQIGSNDIRKVD-EKL--TPQLYILDIADNPNISIDVTSVCP 849
Query: 302 LGRLSALDLRGAGLTNMMGHSM 323
L ++ G
Sbjct: 850 YIEAGMYVLLYDKTQDIRGCDA 871
Score = 73.4 bits (180), Expect = 2e-14
Identities = 27/215 (12%), Positives = 59/215 (27%), Gaps = 37/215 (17%)
Query: 133 TLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
L P + R+ + + L DL + + P +P +K + L
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP--EMKPIKKDSRISLKD 427
Query: 193 NKLSSVNNK------TFIGLKSLKVLNLRGNFLEDLPDRL-------------------F 227
++ ++ N+ L L+++ + + +
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487
Query: 228 APLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP---------TPSFIYL 278
+ L L +++L L L+ L + N+ S
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547
Query: 279 GMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLRG 312
+ +G N A + + +L LD
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582
Score = 49.1 bits (117), Expect = 1e-06
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 127 LDVIPITLN--PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184
L P + PS+ +L + N I+ VD + L +D++ N ++I + P +
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIE 852
Query: 185 LVELQLNHNKLSSVNNKTFIGLK 207
L ++K + +G++
Sbjct: 853 AGMYVLLYDKTQDIRGCDALGIE 875
Score = 46.0 bits (109), Expect = 1e-05
Identities = 13/111 (11%), Positives = 33/111 (29%), Gaps = 4/111 (3%)
Query: 206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265
+ L+L G + L+ L+ L G + + + + + +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381
Query: 266 QLRSVPTPSFI----YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
++R F+ L + L+ +N + + L +
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 112 bits (281), Expect = 7e-28
Identities = 33/186 (17%), Positives = 73/186 (39%), Gaps = 12/186 (6%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
+ + + +++ L L N ++ + S++ + ++N + + +
Sbjct: 72 ETLDLESLSTLRTLDLNNNYVQE----LLVGPSIETLHAANNNISRVSCSRG---QGKKN 124
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR-LFAPLSHLEELDLGQNRISRI 246
+ L +NK++ + + ++ L+L+ N ++ + L A LE L+L N I +
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184
Query: 247 DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 306
L+ L L N+L + P F + + + N + + A L
Sbjct: 185 KGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLE 240
Query: 307 ALDLRG 312
DLRG
Sbjct: 241 HFDLRG 246
Score = 110 bits (277), Expect = 3e-27
Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 12/186 (6%)
Query: 134 LNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
+ + + +K S Q +++ +DLS N L I P KL L L+
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
N L + L +L+ L+L N++++L +E L N ISR+ + +
Sbjct: 68 NVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRGQ 120
Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF-NGLGRLSALDLR 311
G + +YL +N++ + + L + LN T+ L L+L+
Sbjct: 121 G---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 312 GAGLTN 317
+ +
Sbjct: 178 YNFIYD 183
Score = 109 bits (275), Expect = 5e-27
Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 7/189 (3%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQ-E 183
N+ + + + + L N+I + D S +Q++DL N++ + +
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169
Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
L L L +N + V + LK L+L N L + F + + + L N++
Sbjct: 170 TLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL 226
Query: 244 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG 303
I++A L L N F V L
Sbjct: 227 VLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECT 284
Query: 304 RLSALDLRG 312
+
Sbjct: 285 VPTLGHYGA 293
Score = 106 bits (266), Expect = 7e-26
Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 14/179 (7%)
Query: 136 PSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
+++ L L N + + + + ++ L+ ++LS N L E L L LN+N
Sbjct: 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNY 91
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
+ + S++ L+ N + + + + L N+I+ +
Sbjct: 92 VQELLV-----GPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDEGCR 143
Query: 255 TALRILYLDDNQLRSVPTPSFI-YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
+ ++ L L N++ +V L L + N + +L LDL
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSS 200
Score = 93.4 bits (232), Expect = 3e-21
Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 7/185 (3%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYS--SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
+Q L LK N I TV+ A S +L+H++L +N + ++ + + L L L+ N
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK--LKTLDLSSN 201
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
KL+ + F + ++LR N L + +LE DL N F
Sbjct: 202 KLAFM-GPEFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDF-F 258
Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 313
R+ + ++ + + + G L + L L +
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318
Query: 314 GLTNM 318
Sbjct: 319 SGQGS 323
Score = 87.6 bits (217), Expect = 2e-19
Identities = 26/199 (13%), Positives = 61/199 (30%), Gaps = 9/199 (4%)
Query: 126 NLDVIPITLN-PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEK 184
+ + + ++ L L N++ + Q + + + L +N+LV I + +
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE-KALRFSQN 238
Query: 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS 244
L L N + F K+ +V + ++ L + + G
Sbjct: 239 LEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297
Query: 245 RIDQACFEGLTALR-----ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 299
+ + L AL+ +L ++ + E+ + T+ D
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECERE-NQARQREIDALKEQYRTVIDQVT 356
Query: 300 NGLGRLSALDLRGAGLTNM 318
L+ + L
Sbjct: 357 LRKQAKITLEQKKKALDEQ 375
Score = 77.6 bits (191), Expect = 5e-16
Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 7/110 (6%)
Query: 203 FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYL 262
K+ + + L+ L +++ELDL N +S+I A T L +L L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 263 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
N L L L L + N L + L
Sbjct: 66 SSNVLYET--LDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN 108
Score = 61.0 bits (148), Expect = 2e-10
Identities = 10/215 (4%), Positives = 41/215 (19%), Gaps = 28/215 (13%)
Query: 132 ITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191
+ + +++ L+ N F + + ++ + + + E
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292
Query: 192 HNKLSSVNNKTFIGLK----------------------------SLKVLNLRGNFLEDLP 223
+ L + ++ +
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVI 352
Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
D++ L+ + + L + + +
Sbjct: 353 DQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLL 412
Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNM 318
+ + + D+ T +
Sbjct: 413 RAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL 447
Score = 60.6 bits (147), Expect = 2e-10
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
+ + + + + + + + + ++ L L N L + L L
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLRG 312
+ NV D L L LDL
Sbjct: 65 LSSNVLYETLD--LESLSTLRTLDLNN 89
Score = 55.6 bits (134), Expect = 8e-09
Identities = 14/146 (9%), Positives = 40/146 (27%), Gaps = 2/146 (1%)
Query: 127 LDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLV 186
D + L + + + ++ + + + +D Q + + ++ +
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363
Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS-R 245
L+ L + L + +L S L+ L R
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQ-HATEEQSPLQLLRAIVKRYEEM 422
Query: 246 IDQACFEGLTALRILYLDDNQLRSVP 271
+ A+R + ++ +
Sbjct: 423 YVEQQSVQNNAIRDWDMYQHKETQLA 448
Score = 35.2 bits (81), Expect = 0.030
Identities = 9/115 (7%), Positives = 35/115 (30%), Gaps = 1/115 (0%)
Query: 135 NPSIQRLVLKYNRIKTVDSAIQFY-SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
+ + + +TV + + ++ L G +L
Sbjct: 335 QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV 394
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ 248
+ + T + + + E ++ + + + D+ Q++ +++ +
Sbjct: 395 GQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 105 bits (264), Expect = 1e-26
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 5/192 (2%)
Query: 120 VTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGF 179
+T + P + LK + +S+ + +++ + ++ G
Sbjct: 3 ITVSTPIKQIFPDDAFAETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ--GI 59
Query: 180 EPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLG 239
+ + L L NKL + L +L L L GN L+ LP+ +F L++L+EL L
Sbjct: 60 QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 240 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 299
+N++ + F+ LT L L L NQL+S+P F L L EL + N +L +G F
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 300 NGLGRLSALDLR 311
+ L +L L L
Sbjct: 178 DKLTQLKDLRLY 189
Score = 97.0 bits (242), Expect = 1e-23
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 127 LDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLV 186
+ I N ++ L L N++ + SA++ ++L ++ L+ NQL ++P F+ L
Sbjct: 56 VQGIQYLPN--VRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112
Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
EL L N+L S+ + F L +L LNL N L+ LP +F L++L ELDL N++ +
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
Query: 247 DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
+ F+ LT L+ L L NQL+SVP F L L
Sbjct: 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
Score = 72.0 bits (177), Expect = 1e-14
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
+ L ++ T L S+ + + ++ + L ++ L LG N++ I
Sbjct: 23 KANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDI 78
Query: 247 DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 306
+ + LT L L L NQL+S+P F L L EL + N +L DG F+ L L+
Sbjct: 79 --SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 307 ALDLRGAGLT 316
L+L L
Sbjct: 137 YLNLAHNQLQ 146
Score = 56.6 bits (137), Expect = 2e-09
Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 139 QRLVLKYNRIKTVDSAIQFYS--SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
+ LVL N+++++ + F +L +++L+HNQL ++P F+ L EL L++N+L
Sbjct: 112 KELVLVENQLQSLPDGV-FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170
Query: 197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
S+ F L LK L L N L+ +PD +F L+ L+ + L N
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 99.4 bits (248), Expect = 4e-25
Identities = 55/175 (31%), Positives = 75/175 (42%), Gaps = 25/175 (14%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
CP C C+ T V C +P + L L+ N
Sbjct: 1 CPSRCSCSGTT--VECYSQGRTSVPTGIPAQTTYLDLETN-------------------- 38
Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
L ++P F+ L +L L NKL S+ N F L SL LNL N L+ LP+ +
Sbjct: 39 ---SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95
Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
F L+ L+EL L N++ + F+ LT L+ L L NQL+SVP F L L
Sbjct: 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Score = 87.8 bits (218), Expect = 8e-21
Identities = 49/154 (31%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
S V+ ++P L L N L S+ N F L SL L L GN
Sbjct: 7 CSGTTVECYSQGRTSVPTGIPAQTTYL---DLETNSLKSLPNGVFDELTSLTQLYLGGNK 63
Query: 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 278
L+ LP+ +F L+ L L+L N++ + F+ LT L+ L L+ NQL+S+P F L
Sbjct: 64 LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL 123
Query: 279 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
L +LR+ N ++ DG F+ L L + L
Sbjct: 124 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 97.8 bits (244), Expect = 1e-24
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
CP +C C D V C L V+P + + L L N+ V + Y L +DL
Sbjct: 4 CPTECTCLDTV--VRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL 61
Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
S+N++ + + F +L+ L L++N+L + +TF GLKSL++L+L GN + +P+
Sbjct: 62 SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121
Query: 227 FAPLSHLEELDLGQN 241
F LS L L +G N
Sbjct: 122 FNDLSALSHLAIGAN 136
Score = 66.6 bits (163), Expect = 3e-13
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
L L GN +P + HL +DL NRIS + F +T L L L N+LR
Sbjct: 34 TELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
+P +F L L L + N + + +GAFN L LS L +
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 101 bits (254), Expect = 3e-24
Identities = 43/211 (20%), Positives = 81/211 (38%), Gaps = 8/211 (3%)
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVNIPI 176
+V + L +P L+ L + N I + S I S L+ + +SHN++ + I
Sbjct: 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEE 235
F+ ++L L L+HNKL ++ +LK L+L N + LP + F +S L+
Sbjct: 63 SVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119
Query: 236 LDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP---SFIYLGMLAELRVGLNVFT 292
L L + + L ++L + P L + F
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179
Query: 293 TLADGAFNGLGRLSALDLRGAGLTNMMGHSM 323
+ D + + L +++ N + +
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFL 210
Score = 89.2 bits (221), Expect = 7e-20
Identities = 50/255 (19%), Positives = 91/255 (35%), Gaps = 9/255 (3%)
Query: 40 NNPKSNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLL 99
NN ++ + S IL+ + ++ +++ S ++ +L + ++
Sbjct: 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ-VVSD 286
Query: 100 VHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPS-IQRLVLKYNRIKTV-DSAIQF 157
V + N T + + S L N +
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH 346
Query: 158 YSSLQHVDLSHNQLVNIPIRG--FEPQEKLVELQLNHNKL-SSVNNKTFIGLKSLKVLNL 214
+ L+ + L NQL + + L +L ++ N + KSL LN+
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406
Query: 215 RGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPS 274
N L D R ++ LDL N+I I + + L AL+ L + NQL+SVP
Sbjct: 407 SSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGI 463
Query: 275 FIYLGMLAELRVGLN 289
F L L ++ + N
Sbjct: 464 FDRLTSLQKIWLHTN 478
Score = 84.1 bits (208), Expect = 3e-18
Identities = 40/295 (13%), Positives = 89/295 (30%), Gaps = 24/295 (8%)
Query: 31 LYKLHPGFQNNPKSNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSL 90
+ L+ E + L E + +L SV + L
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194
Query: 91 LVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKT 150
+L + A L P N ++ + +N
Sbjct: 195 SNIKCVLEDNKCSYFLSIL---------------AKLQTNPKLSNLTLNNIETTWNSFIR 239
Query: 151 VDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQ-----EKLVELQLNHNKLSSVNNKTFIG 205
+ + +++++ + +S+ +L + L Q+ + + +
Sbjct: 240 I-LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298
Query: 206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265
++ + N + + + +S LD N ++ LT L L L N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358
Query: 266 QLRSVPTPSFIYLGM--LAELRVGLNVFT-TLADGAFNGLGRLSALDLRGAGLTN 317
QL+ + + + M L +L + N + G + L +L++ LT+
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413
Score = 79.1 bits (195), Expect = 2e-16
Identities = 32/136 (23%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQF---YSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLN 191
++ L+L+ N++K + + SLQ +D+S N + +G + L+ L ++
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407
Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF 251
N L+ + +KVL+L N ++ +P ++ L L+EL++ N++ + F
Sbjct: 408 SNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIF 464
Query: 252 EGLTALRILYLDDNQL 267
+ LT+L+ ++L N
Sbjct: 465 DRLTSLQKIWLHTNPW 480
Score = 58.7 bits (142), Expect = 8e-10
Identities = 26/205 (12%), Positives = 51/205 (24%), Gaps = 23/205 (11%)
Query: 137 SIQRLVLKYNRI----KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
+Q + I I S +L + + + + +L
Sbjct: 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218
Query: 193 N-------------------KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHL 233
N ++ + T + S+ + L+G D L L
Sbjct: 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278
Query: 234 EELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
+ + +E + + I + R V + L N+ T
Sbjct: 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338
Query: 294 LADGAFNGLGRLSALDLRGAGLTNM 318
L L L L+ L +
Sbjct: 339 TVFENCGHLTELETLILQMNQLKEL 363
Score = 43.3 bits (102), Expect = 6e-05
Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 10/200 (5%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYS--SLQHVDLSHNQLVNIPIRGFEPQE 183
L I +++ L L +N + +F + L+ + LS L +
Sbjct: 80 KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139
Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
L + + GL+ +L F + +S +L + I
Sbjct: 140 ISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197
Query: 244 SRIDQACFEGLTALRILYLDDNQ------LRSVPTPSFIYLGMLAELRVGLNVFTTLADG 297
+ + + L N L ++ T ++ +L + + ++++
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257
Query: 298 AFNGLGRLSALDLRGAGLTN 317
G D G L
Sbjct: 258 KLQGQLDFRDFDYSGTSLKA 277
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 100 bits (250), Expect = 2e-23
Identities = 38/207 (18%), Positives = 79/207 (38%), Gaps = 21/207 (10%)
Query: 126 NLDVIPITLN--PSIQRLVLKYNRIKTVD---------SAIQFYSSLQHVDLSHNQLVNI 174
NL +P L P +Q + + NR + + + +Q + + +N L
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320
Query: 175 PI-RGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHL 233
P+ + +KL L+ +N+L F L LNL N + ++P +
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQV 379
Query: 234 EELDLGQNRISRI-DQACFEGLTALRILYLDDNQLRSVPT-------PSFIYLGMLAELR 285
E L N++ I + + ++ + + N++ SV P+ ++ +
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLRG 312
+ N + F+ LS+++L G
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMG 466
Score = 100 bits (250), Expect = 2e-23
Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 16/191 (8%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
+ L YN+++ A L ++L++NQ+ IP E++ L HNKL
Sbjct: 330 KKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389
Query: 196 SSVNNKTFIG-LKSLKVLNLRGNFLEDLPDRLFAP-------LSHLEELDLGQNRISRID 247
+ N + + ++ N + + + F P ++ ++L N+IS+
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449
Query: 248 QACFEGLTALRILYLDDNQLRSVPT-------PSFIYLGMLAELRVGLNVFTTL-ADGAF 299
+ F + L + L N L +P +F +L + + N T L D
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509
Query: 300 NGLGRLSALDL 310
L L +DL
Sbjct: 510 TTLPYLVGIDL 520
Score = 84.3 bits (209), Expect = 3e-18
Identities = 30/211 (14%), Positives = 60/211 (28%), Gaps = 41/211 (19%)
Query: 132 ITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQ-------E 183
++ + L N+I S L ++L N L IP + +
Sbjct: 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488
Query: 184 KLVELQLNHNKLSSV-NNKTFIGLKSLKVLNLRGNFLEDLPDRL---------------- 226
L + L NKL+ + ++ L L ++L N P +
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD 548
Query: 227 -------------FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP 273
L +L +G N I ++++ + +L + DN S+
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISIDLS 605
Query: 274 SFIYLGMLAELRVGLNVFTTLADGAFNGLGR 304
+ + + + R
Sbjct: 606 YVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636
Score = 67.8 bits (166), Expect = 1e-12
Identities = 18/196 (9%), Positives = 59/196 (30%), Gaps = 16/196 (8%)
Query: 127 LDVIPITLNPSIQRLVLKYNR-IKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
+D P + + + + K++ + + + N + + + KL
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS-KAVMRLTKL 208
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
+ + ++ + N ++ + D + L L ++++
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTE-----DLKWDNLKDLTDVEVYNCPNLT 263
Query: 246 IDQACFEGLTALRILYLDDNQLRSVPT--------PSFIYLGMLAELRVGLNVFTTL-AD 296
+ L ++++ + N+ S + + +G N T +
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323
Query: 297 GAFNGLGRLSALDLRG 312
+ + +L L+
Sbjct: 324 TSLQKMKKLGMLECLY 339
Score = 62.4 bits (152), Expect = 5e-11
Identities = 24/190 (12%), Positives = 54/190 (28%), Gaps = 15/190 (7%)
Query: 135 NPSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE--KLVELQLN 191
N + L L+ V AI + L+ + L + + R F P+ + +
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE-KVNERLFGPKGISANMSDEQK 138
Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP-----LSHLEELDLGQNRISRI 246
+L + + P + ++ N I+ +
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198
Query: 247 DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 306
+A LT LR Y+ ++ + + D ++ L L+
Sbjct: 199 SKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ-----QYKTEDLKWDNLKDLT 252
Query: 307 ALDLRGAGLT 316
+++
Sbjct: 253 DVEVYNCPNL 262
Score = 43.1 bits (102), Expect = 9e-05
Identities = 11/89 (12%), Positives = 20/89 (22%), Gaps = 1/89 (1%)
Query: 230 LSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY-LGMLAELRVGL 288
+ L L S LT L +L L + + +
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139
Query: 289 NVFTTLADGAFNGLGRLSALDLRGAGLTN 317
+ + R DL + +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINS 168
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 95.5 bits (238), Expect = 2e-23
Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 27/181 (14%)
Query: 101 HQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSS 160
H ++A CP C C+ T V C+ +P + + Q L L N
Sbjct: 8 HHSAA-CPSQCSCSGTT--VDCRSKRHASVPAGIPTNAQILYLHDN-------------- 50
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
Q+ + F+ L EL L N+L ++ F L L VL+L N L
Sbjct: 51 ---------QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 221 DLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM 280
LP +F L HL+EL + N+++ + + E LT L L LD NQL+S+P +F L
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 281 L 281
L
Sbjct: 161 L 161
Score = 61.6 bits (150), Expect = 3e-11
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
++L L N + L +F L +L+EL LG N++ + F+ LT L +L L NQL
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 311
+P+ F L L EL + N T L G L L+ L L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALD 143
Score = 38.9 bits (91), Expect = 0.001
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 258 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
+ILYL DNQ+ + F L L EL +G N L G F+ L +L+ LDL
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97
Score = 33.1 bits (76), Expect = 0.084
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 138 IQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
++ L + N++ + I+ + L H+ L NQL +IP F+ L L N
Sbjct: 114 LKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 29.3 bits (66), Expect = 1.7
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 283 ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
L + N T L G F+ L L L L L
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG 77
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 97.6 bits (244), Expect = 3e-23
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 11/185 (5%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P++ + L + +++K V + I + L + L++NQ+ +I L
Sbjct: 147 DLSPLSNMTGLNYLTVTESKVKDV-TPIANLTDLYSLSLNYNQIEDIS--PLASLTSLHY 203
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
N+++ + + L L + N + DL A LS L L++G N+IS I+
Sbjct: 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN 259
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
+ LT L++L + NQ+ + L L L + N GL L+
Sbjct: 260 A--VKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315
Query: 308 LDLRG 312
L L
Sbjct: 316 LFLSQ 320
Score = 96.1 bits (240), Expect = 9e-23
Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 12/191 (6%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
+ P R VL+ + V + S+ + ++ ++ +I G E L
Sbjct: 14 QIFPDADLAEGIRAVLQKASVTDV-VTQEELESITKLVVAGEKVASIQ--GIEYLTNLEY 70
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L LN N+++ ++ L L L + N + D+ L++L EL L ++ IS I
Sbjct: 71 LNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDIS 126
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
LT + L L N S +P + L L V + + L L +
Sbjct: 127 --PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVT--PIANLTDLYS 181
Query: 308 LDLRGAGLTNM 318
L L + ++
Sbjct: 182 LSLNYNQIEDI 192
Score = 95.3 bits (238), Expect = 2e-22
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 11/185 (5%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
DV PI + L L YN+I+ + S + +SL + NQ+ +I +L
Sbjct: 169 DVTPIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDIT--PVANMTRLNS 225
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L++ +NK++ ++ L L L + N + D+ L+ L+ L++G N+IS I
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDIS 281
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
L+ L L+L++NQL + L L L + N T + L ++ +
Sbjct: 282 V--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDS 337
Query: 308 LDLRG 312
D
Sbjct: 338 ADFAN 342
Score = 94.5 bits (236), Expect = 3e-22
Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 12/190 (6%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ + L L N + S + + L ++ ++ +++ ++ L
Sbjct: 124 DISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYS 181
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L LN+N++ ++ L SL N + D+ A ++ L L +G N+I+ +
Sbjct: 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
L+ L L + NQ+ + + L L L VG N + ++ N L +L++
Sbjct: 238 --PLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNS 291
Query: 308 LDLRGAGLTN 317
L L L N
Sbjct: 292 LFLNNNQLGN 301
Score = 91.8 bits (229), Expect = 3e-21
Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 9/162 (5%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ S+ N+I + + + + L + + +N++ ++ +L
Sbjct: 191 DISPLASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKITDLS--PLANLSQLTW 247
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L++ N++S +N L LK+LN+ N + D+ LS L L L N++ D
Sbjct: 248 LEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNED 303
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
GLT L L+L N + + L +
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQ 343
Score = 91.4 bits (228), Expect = 4e-21
Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 7/141 (4%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ + L + N+I + S + S L +++ NQ+ +I + KL
Sbjct: 213 DITPVANMTRLNSLKIGNNKITDL-SPLANLSQLTWLEIGTNQISDIN--AVKDLTKLKM 269
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L + N++S ++ L L L L N L + + L++L L L QN I+ I
Sbjct: 270 LNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327
Query: 248 QACFEGLTALRILYLDDNQLR 268
L+ + + ++
Sbjct: 328 P--LASLSKMDSADFANQVIK 346
Score = 79.5 bits (197), Expect = 7e-17
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ + L + N+I + +A++ + L+ +++ NQ+ +I +L
Sbjct: 235 DLSPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNS 291
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
L LN+N+L + + + GL +L L L N + D+ A LS ++ D I +
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347
Score = 33.7 bits (78), Expect = 0.080
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Query: 233 LEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
L I++I L L + V T L + +L V
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57
Query: 293 TLADGAFNGLGRLSALDLRGAGLTNM 318
++ L L L+L G +T++
Sbjct: 58 SIQ--GIEYLTNLEYLNLNGNQITDI 81
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 99.2 bits (247), Expect = 3e-23
Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 8/204 (3%)
Query: 113 CNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQL 171
N+ +V NL +P L P + L L N I + I F S L+ + LSHN++
Sbjct: 29 SNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88
Query: 172 VNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPL 230
++ F + L L ++HN+L ++ + + SL+ L+L N + LP + F L
Sbjct: 89 RSLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNL 145
Query: 231 SHLEELDLGQNRISRIDQACFEGL-TALRILYLDDNQLRSVPTPSFIYLG--MLAELRVG 287
+ L L L + ++D L + +L L ++ T S +L +
Sbjct: 146 TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205
Query: 288 LNVFTTLADGAFNGLGRLSALDLR 311
++F+ + + N LG L +++
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIK 229
Score = 81.8 bits (202), Expect = 2e-17
Identities = 43/161 (26%), Positives = 62/161 (38%), Gaps = 11/161 (6%)
Query: 137 SIQRLVLKYNRIKTVDS-AIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
S L N LQ + L N L N + + L+ L
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSL 412
Query: 196 SS----VNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPL-SHLEELDLGQNRISRIDQAC 250
+S ++T +S+ VLNL N L +F L ++ LDL NRI I +
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSN---MLTGSVFRCLPPKVKVLDLHNNRIMSIPKD- 468
Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVF 291
L AL+ L + NQL+SVP F L L + + N +
Sbjct: 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Score = 78.4 bits (193), Expect = 3e-16
Identities = 36/276 (13%), Positives = 83/276 (30%), Gaps = 26/276 (9%)
Query: 66 LNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEA 125
L+ I ++ + + TT L L+ H S F + +
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228
Query: 126 NLDVIP----------ITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP 175
L+ +T P++ + L++ T +++ + + + + N+
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIET-TWKCSVKLFQFFWPRPVEYLNIYNLT 287
Query: 176 IRGFEPQEK----------LVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
I +E+ L+ + + + + + L + +
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
S L+ QN + L L+ L L N L++ + + ++ L
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM-TKNMSSLE 406
Query: 286 VGLNVFTTLADGAFNGL----GRLSALDLRGAGLTN 317
+L A++ + L+L LT
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442
Score = 71.8 bits (176), Expect = 5e-14
Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEP----QEKLVELQLN 191
+Q L+L+ N +K ++ ++ L ++ ++ E ++ L L+
Sbjct: 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436
Query: 192 HNKLSSVNNKTFIGL-KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC 250
N L+ F L +KVL+L N + +P L L+EL++ N++ +
Sbjct: 437 SNMLTGS---VFRCLPPKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGV 492
Query: 251 FEGLTALRILYLDDN 265
F+ LT+L+ ++L DN
Sbjct: 493 FDRLTSLQYIWLHDN 507
Score = 68.4 bits (167), Expect = 7e-13
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
K L+L N + +L + LS L L L NRI +D F L L + N+L
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGA-FNGLGRLSALDLRGAGLTN 317
+++ + L L + N F L F L +L+ L L A
Sbjct: 113 QNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160
Score = 63.0 bits (153), Expect = 4e-11
Identities = 34/184 (18%), Positives = 70/184 (38%), Gaps = 15/184 (8%)
Query: 66 LNKLRIFINDS-VLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKE 124
+N + I+D+ + T L + + C + +
Sbjct: 331 MNIKMLSISDTPFIHMVCPPS----PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386
Query: 125 ANLDVIPIT--LNPSIQRLVLKYNRIKTV-----DSAIQFYSSLQHVDLSHNQLVNIPIR 177
L + ++ L + ++ D + S+ ++LS N L R
Sbjct: 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446
Query: 178 GFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELD 237
P+ + L L++N++ S+ K L++L+ LN+ N L+ +PD +F L+ L+ +
Sbjct: 447 CLPPK--VKVLDLHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503
Query: 238 LGQN 241
L N
Sbjct: 504 LHDN 507
Score = 49.5 bits (118), Expect = 9e-07
Identities = 27/232 (11%), Positives = 61/232 (26%), Gaps = 43/232 (18%)
Query: 127 LDVIPITLNPSIQRLVLKYNRIKTVDSAIQFY--SSLQHVDLSHNQLVNIPIRGFEP-QE 183
L I S++ L L +N + +F + L + LS + + +
Sbjct: 112 LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171
Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRI 243
+ L L + ++ VL+L + ++ ++ L L L ++
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230
Query: 244 SRIDQACFEGL----------------------------------TALRILYLDDNQLRS 269
+ + + L + + +
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290
Query: 270 VP-----TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
T S L L V VF + ++ ++ L +
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 95.8 bits (238), Expect = 4e-22
Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 26/229 (11%)
Query: 88 WSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNR 147
W AL + +C N + + NL +P L P I L + N
Sbjct: 33 WDKWEKQALPGENRNEAVSLLKECLINQFS-ELQLNRLNLSSLPDNLPPQITVLEITQNA 91
Query: 148 IKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLK 207
+ ++ +SL+++D N+L +P E L L +++N+L+ +
Sbjct: 92 LISLPELP---ASLEYLDACDNRLSTLP----ELPASLKHLDVDNNQLTMLPE----LPA 140
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
L+ +N N L LP+ + LE L + N+++ + E +L L + N L
Sbjct: 141 LLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLTFLP----ELPESLEALDVSTNLL 192
Query: 268 RSVPTPSFIYLGMLAELRVGLNV----FTTLADGAFNGLGRLSALDLRG 312
S+P + E + T + + + L + L
Sbjct: 193 ESLP-AVPVRNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILED 239
Score = 80.0 bits (197), Expect = 9e-17
Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 16/172 (9%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
L +P S++ L + N++ + + L++++ +NQL +P E L
Sbjct: 111 RLSTLPELP-ASLKHLDVDNNQLTMLPELP---ALLEYINADNNQLTMLP----ELPTSL 162
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD---RLFAPLSHLEELDLGQNR 242
L + +N+L+ + +SL+ L++ N LE LP R +NR
Sbjct: 163 EVLSVRNNQLTFLPE----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR 218
Query: 243 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
I+ I L + L+DN L S S + F+
Sbjct: 219 ITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS 269
Score = 73.5 bits (180), Expect = 1e-14
Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 20/155 (12%)
Query: 165 DLSHNQLVNIP---IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLED 221
+ +N + ++ EK N N+ S+ + + L L L
Sbjct: 16 NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLSS 73
Query: 222 LPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
LPD L + L++ QN + + E +L L DN+L ++P L
Sbjct: 74 LPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE----LPASL 122
Query: 282 AELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
L V N T L + L ++ LT
Sbjct: 123 KHLDVDNNQLTMLPE----LPALLEYINADNNQLT 153
Score = 34.6 bits (79), Expect = 0.049
Identities = 22/164 (13%), Positives = 41/164 (25%), Gaps = 7/164 (4%)
Query: 134 LNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
+ + NRI + I + L N L + Q+
Sbjct: 205 SEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL-SQQTAQPDYHGPR 263
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
S+++ L + F E+ + E + + +D+
Sbjct: 264 IYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDR--LSD 321
Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 297
+ R Q+ + L AELR A
Sbjct: 322 TVSARNTSGFREQVAAWLE----KLSASAELRQQSFAVAADATE 361
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 94.6 bits (236), Expect = 8e-22
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%)
Query: 127 LDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLV 186
D+ P+ +++RL + N++ + S + ++L+ + ++NQ+ +I L
Sbjct: 168 TDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT--PLGILTNLD 224
Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
EL LN N+L + L +L L+L N + +L + L+ L EL LG N+IS I
Sbjct: 225 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280
Query: 247 DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 306
GLTAL L L++NQL + L L L + N + ++ + L +L
Sbjct: 281 S--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQ 334
Query: 307 ALDLRGAGLTN 317
L +++
Sbjct: 335 RLFFYNNKVSD 345
Score = 92.3 bits (230), Expect = 5e-21
Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D + T + L IK++ +++ ++L ++ S+NQL +I + KLV+
Sbjct: 38 DTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVD 94
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
+ +N+N+++ + L +L L L N + D+ L++L L+L N IS I
Sbjct: 95 ILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS 150
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
GLT+L+ L + P L L L + N + ++ L L +
Sbjct: 151 --ALSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDIS--VLAKLTNLES 203
Query: 308 LDLRGAGLTN 317
L +++
Sbjct: 204 LIATNNQISD 213
Score = 89.6 bits (223), Expect = 4e-20
Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 14/191 (7%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
+ T + VL + S + + + +I G E L +
Sbjct: 16 QIFTDTALAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSID--GVEYLNNLTQ 72
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
+ ++N+L+ + L L + + N + D+ A L++L L L N+I+ ID
Sbjct: 73 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
+ LT L L L N + + + L L +L G V L L
Sbjct: 129 --PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTDLK---PLANLTTLER 181
Query: 308 LDLRGAGLTNM 318
LD+ ++++
Sbjct: 182 LDISSNKVSDI 192
Score = 89.3 bits (222), Expect = 6e-20
Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 14/190 (7%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ ++ RL L N I + SA+ +SLQ + + P+ L
Sbjct: 126 DIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLT---TLER 181
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L ++ NK+S ++ L +L+ L N + D+ L++L+EL L N++ I
Sbjct: 182 LDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG 237
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
LT L L L +NQ+ ++ L L EL++G N + ++ GL L+
Sbjct: 238 T--LASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS--PLAGLTALTN 291
Query: 308 LDLRGAGLTN 317
L+L L +
Sbjct: 292 LELNENQLED 301
Score = 76.9 bits (190), Expect = 7e-16
Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 9/167 (5%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
++ P+ ++ L L N+++ + S I +L ++ L N + +I KL
Sbjct: 279 NISPLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQR 335
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L +NK+S V++ L ++ L+ N + DL A L+ + +L L +
Sbjct: 336 LFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
++ + L + T S G E + N+ +
Sbjct: 392 VNYKANVSIPNTVKNVTGALIAPATISD--GGSYTEPDITWNLPSYT 436
Score = 70.0 bits (172), Expect = 1e-13
Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 11/158 (6%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFL 219
L ++ + +N I + ++ L ++ + L + L +
Sbjct: 2 PLGSATITQDTPINQ-IFTDTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGI 58
Query: 220 EDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG 279
+ + L++L +++ N+++ I + LT L + +++NQ+ + L
Sbjct: 59 KSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLT 112
Query: 280 MLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
L L + N T + L L+ L+L +++
Sbjct: 113 NLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISD 148
Score = 37.6 bits (88), Expect = 0.004
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 23/113 (20%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE---- 183
DV + +I L +N+I + + + + + + L+ N P+
Sbjct: 345 DVSSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403
Query: 184 ------------------KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
E + N S N ++ + + + F
Sbjct: 404 VKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTF 456
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 89.1 bits (222), Expect = 1e-21
Identities = 23/160 (14%), Positives = 50/160 (31%), Gaps = 7/160 (4%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
P +L Y + + +A+ + + +L + + +LQ + +L
Sbjct: 4 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQEL 62
Query: 196 SSVNNKTFIG-LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
+ + K +G L L L L + L +L ++ + A L
Sbjct: 63 TRL--KAAVGELPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTELK-AAVGEL 118
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
L +L + + L ++ + T L
Sbjct: 119 PEKSKLQEIYQELTQLK-AAVGELPDQSKQQQIYQELTDL 157
Score = 63.2 bits (155), Expect = 2e-12
Identities = 21/111 (18%), Positives = 32/111 (28%), Gaps = 4/111 (3%)
Query: 206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265
L L L L + L +L ++R+ A L L
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTRLKAA-VGELPEKSKLQEIYQ 60
Query: 266 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
+L + + L ++L+ T L A L S L LT
Sbjct: 61 ELTRLK-AAVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELT 109
Score = 57.9 bits (141), Expect = 2e-10
Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 2/89 (2%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
P +L Y + + +A+ + + +L + + +LQ + +L
Sbjct: 73 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELK-AAVGELPEKSKLQEIYQEL 131
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
+ + L L DL
Sbjct: 132 TQL-KAAVGELPDQSKQQQIYQELTDLKT 159
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 92.6 bits (230), Expect = 6e-21
Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 28/208 (13%)
Query: 109 PDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSH 168
C N V+ E+ L +P L I LV+ N + ++ + L+ +++S
Sbjct: 35 RACLNNGNA-VLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALP---PELRTLEVSG 90
Query: 169 NQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFA 228
NQL ++P+ +L L ++ L L + GN L LP
Sbjct: 91 NQLTSLPV-LPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPVL--- 139
Query: 229 PLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 288
L+EL + N+++ + + L L+ +NQL S+P L EL V
Sbjct: 140 -PPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTSLPM----LPSGLQELSVSD 190
Query: 289 NVFTTLADGAFNGLGRLSALDLRGAGLT 316
N +L L L LT
Sbjct: 191 NQLASLPT----LPSELYKLWAYNNRLT 214
Score = 83.8 bits (207), Expect = 5e-18
Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 28/192 (14%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
NL +P P ++ L + N++ ++ L L +P L
Sbjct: 72 NLTSLPALP-PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP-------SGL 123
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
+L + N+L+S+ L+ L++ N L LP S L +L N+++
Sbjct: 124 CKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLTS 175
Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305
+ + L+ L + DNQL S+PT L +L N T+L L
Sbjct: 176 LP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP----ALPSGL 223
Query: 306 SALDLRGAGLTN 317
L + G LT+
Sbjct: 224 KELIVSGNRLTS 235
Score = 81.1 bits (200), Expect = 5e-17
Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 17/156 (10%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
L +P+ +Q L + N++ ++ + S L + +N+L ++P L
Sbjct: 172 QLTSLPMLP-SGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLP----ALPSGL 223
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
EL ++ N+L+S+ LK L + GN L LP S L L + +N+++R
Sbjct: 224 KELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLPMLP----SGLLSLSVYRNQLTR 275
Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
+ ++ L++ + L+ N L + +
Sbjct: 276 LPES-LIHLSSETTVNLEGNPLSERTLQALREITSA 310
Score = 63.0 bits (153), Expect = 4e-11
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Query: 206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265
VLN+ + L LPD L +H+ L + N ++ + LR L + N
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLP----ALPPELRTLEVSGN 91
Query: 266 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
QL S+P L L+ L L L L + G LT+
Sbjct: 92 QLTSLP-VLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTS 135
Score = 60.7 bits (147), Expect = 2e-10
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 12/142 (8%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
L +P ++ L++ NR+ ++ S L+ + +S N+L ++P+ P L
Sbjct: 212 RLTSLPALP-SGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPM---LPS-GL 263
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
+ L + N+L+ + + I L S +NL GN L + + ++ I R
Sbjct: 264 LSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS---GPIIR 319
Query: 246 IDQACFEGLTALRILYLDDNQL 267
D A R L+L
Sbjct: 320 FDMAGASAPRETRALHLAAADW 341
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 89.4 bits (222), Expect = 1e-20
Identities = 39/210 (18%), Positives = 80/210 (38%), Gaps = 31/210 (14%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP------------ 175
D + I L + T+ +Q+ ++L ++L NQ+ ++
Sbjct: 33 DTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELE 91
Query: 176 --------IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLF 227
+ + + L L +++ V GL +L+VL L N + ++
Sbjct: 92 LSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--L 147
Query: 228 APLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG 287
A L++L+ L +G ++S + L+ L L DDN++ + L L E+ +
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLK 203
Query: 288 LNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
N + ++ L + L +TN
Sbjct: 204 NNQISDVS--PLANTSNLFIVTLTNQTITN 231
Score = 89.0 bits (221), Expect = 2e-20
Identities = 36/191 (18%), Positives = 75/191 (39%), Gaps = 13/191 (6%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
+ P + ++ + + + + + I G + L+
Sbjct: 11 VIFPDPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIG 67
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L+L N+++ + L + L L GN L+++ A L ++ LDL +I+ +
Sbjct: 68 LELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVT 123
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
GL+ L++LYLD NQ+ ++ L L L +G + L L +L+
Sbjct: 124 P--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTT 177
Query: 308 LDLRGAGLTNM 318
L ++++
Sbjct: 178 LKADDNKISDI 188
Score = 84.7 bits (210), Expect = 7e-19
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 9/144 (6%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
+V I SI+ L L +I V + + S+LQ + L NQ+ NI L
Sbjct: 99 NVSAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQY 155
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L + + ++S + L L L N + D+ A L +L E+ L N+IS +
Sbjct: 156 LSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211
Query: 248 QACFEGLTALRILYLDDNQLRSVP 271
+ L I+ L + + + P
Sbjct: 212 --PLANTSNLFIVTLTNQTITNQP 233
Score = 69.7 bits (171), Expect = 9e-14
Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
DV P+ ++Q L L N+I + S + ++LQ++ + + Q+ ++ KL
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTT 177
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L+ + NK+S ++ L +L ++L+ N + D+ A S+L + L I+
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233
Query: 248 QACFEGLTALRILYLDDNQL 267
L ++
Sbjct: 234 VFYNNNLVVPNVVKGPSGAP 253
Score = 34.3 bits (79), Expect = 0.046
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ P++ + LK N+I V S + S+L V L++ + N P+ F +V
Sbjct: 187 DISPLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQPV--FYNNNLVVP 243
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
+ + + T + NL N + +
Sbjct: 244 NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 90.4 bits (225), Expect = 2e-20
Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 18/185 (9%)
Query: 133 TLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
L P ++ L + N+++ + +Q S L+ +D+ +N L +P + L + +
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGN 182
Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
N+L + L L + N L+ LPD LE + G N + + + +
Sbjct: 183 NQLEELPE--LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAGNNILEELPE--LQ 234
Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
L L +Y D+N L+++P L L V N T L + L L +
Sbjct: 235 NLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLPE-LPQSLTFLDVSENIF 289
Query: 313 AGLTN 317
+GL+
Sbjct: 290 SGLSE 294
Score = 88.9 bits (221), Expect = 6e-20
Identities = 40/192 (20%), Positives = 74/192 (38%), Gaps = 22/192 (11%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
L +P P ++ LV N + + Q SL + + L ++P L
Sbjct: 82 GLSSLPELP-PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP-------PLL 133
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
L +++N+L + LK++++ N L+ LPD LE + G N++
Sbjct: 134 EYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEE 187
Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305
+ + + L L +Y D+N L+ +P L + G N+ L + L L
Sbjct: 188 LPE--LQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEELPE--LQNLPFL 239
Query: 306 SALDLRGAGLTN 317
+ + L
Sbjct: 240 TTIYADNNLLKT 251
Score = 75.4 bits (186), Expect = 2e-15
Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 29/187 (15%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
L +P PS++ L ++ N + + Q SL +D+S N + E L
Sbjct: 248 LLKTLPDLP-PSLEALNVRDNYLTDLPELPQ---SLTFLDVSENIFSGLS----ELPPNL 299
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
L + N++ S+ + SL+ LN+ N L +LP LE L N ++
Sbjct: 300 YYLNASSNEIRSLCDL----PPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAE 351
Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305
+ E L+ L+++ N LR P + +LR+ + + L
Sbjct: 352 VP----ELPQNLKQLHVEYNPLREFPDI----PESVEDLRMN-SHLAEV----PELPQNL 398
Query: 306 SALDLRG 312
L +
Sbjct: 399 KQLHVET 405
Score = 71.6 bits (176), Expect = 5e-14
Identities = 36/180 (20%), Positives = 73/180 (40%), Gaps = 24/180 (13%)
Query: 133 TLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
L P++ L N I+++ SL+ +++S+N+L+ +P +L L +
Sbjct: 294 ELPPNLYYLNASSNEIRSLCDLP---PSLEELNVSNNKLIELP----ALPPRLERLIASF 346
Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
N L+ V ++LK L++ N L + PD +E+L + + ++ + E
Sbjct: 347 NHLAEVPE----LPQNLKQLHVEYNPLREFPDIP----ESVEDLRMN-SHLAEV----PE 393
Query: 253 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
L+ L+++ N LR P + +LR+ + A +L
Sbjct: 394 LPQNLKQLHVETNPLREFPDI----PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449
Score = 68.1 bits (167), Expect = 6e-13
Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 26/147 (17%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
PS++ L + N++ + + L+ + S N L +P PQ L +L + +N L
Sbjct: 317 PSLEELNVSNNKLIELPALP---PRLERLIASFNHLAEVPE---LPQ-NLKQLHVEYNPL 369
Query: 196 SSV-------------NNKTFI--GLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ 240
++ + ++LK L++ N L + PD +E+L +
Sbjct: 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP----ESVEDLRMNS 425
Query: 241 NRISRIDQACFEGLTALRILYLDDNQL 267
R+ + E L + +
Sbjct: 426 ERVVDPYEFAHETTDKLEDDVFEHHHH 452
Score = 65.4 bits (160), Expect = 5e-12
Identities = 27/198 (13%), Positives = 53/198 (26%), Gaps = 35/198 (17%)
Query: 135 NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
N +Q + + + + + S + ++ G Q ++ +L
Sbjct: 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
+ L L L LP+ HLE L N ++ + + + L
Sbjct: 70 D-----------RQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPEL-PQSL 113
Query: 255 TALRILYLDDNQLRSVPT---------------PSFIYLGMLAELRVGLNVFTTLADGAF 299
+L + + L +P P L + V N L
Sbjct: 114 KSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL----P 169
Query: 300 NGLGRLSALDLRGAGLTN 317
+ L + L
Sbjct: 170 DLPPSLEFIAAGNNQLEE 187
Score = 53.5 bits (129), Expect = 3e-08
Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 23/134 (17%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP---------- 175
L +P L P ++RL+ +N + V +L+ + + +N L P
Sbjct: 328 KLIELP-ALPPRLERLIASFNHLAEVPELP---QNLKQLHVEYNPLREFPDIPESVEDLR 383
Query: 176 -----IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPL 230
E + L +L + N L + +S++ L + + D +
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPLREFPDI----PESVEDLRMNSERVVDPYEFAHETT 439
Query: 231 SHLEELDLGQNRIS 244
LE+ +
Sbjct: 440 DKLEDDVFEHHHHH 453
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 85.8 bits (213), Expect = 3e-20
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 187 ELQLNHNKLSSV-NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
EL LN N+L + ++ F L L L L+ N L + F SH++EL LG+N+I
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
I F GL L+ L L DNQ+ V SF +L L L + N
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 85.8 bits (213), Expect = 4e-20
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 24/159 (15%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
CP C C T V C L IP + L+L N + + S F
Sbjct: 2 CPAMCHCEGTT--VDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLF--------- 50
Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
+L + LV+L+L N+L+ + F G ++ L L N ++++ +++
Sbjct: 51 --GRLPH-----------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97
Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265
F L L+ L+L N+IS + FE L +L L L N
Sbjct: 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 57.7 bits (140), Expect = 3e-10
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 234 EELDLGQNRISRID-QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
EL L N + RI F L L L L NQL + +F + EL++G N
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 293 TLADGAFNGLGRLSALDLR 311
+++ F GL +L L+L
Sbjct: 92 EISNKMFLGLHQLKTLNLY 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 87.4 bits (217), Expect = 5e-20
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 9/174 (5%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ ++ L L N++K + S+++ L+ + L HN + +I G +L
Sbjct: 82 DIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLES 138
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L +NK++ + L L L+L N + D+ A L+ L+ L L +N IS +
Sbjct: 139 LYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR 194
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 301
GL L +L L + + P L + ++ T + +G
Sbjct: 195 --ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 246
Score = 74.3 bits (183), Expect = 2e-15
Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 13/183 (7%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
P + IK + + ++ +L + + + ++ N++ +
Sbjct: 2 PLGSETITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDI 58
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
SV L ++ L L GN L D+ A L +L L L +N++ + + L
Sbjct: 59 KSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLK 112
Query: 256 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315
L+ L L+ N + + ++L L L +G N T + + L +L L L +
Sbjct: 113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQI 168
Query: 316 TNM 318
+++
Sbjct: 169 SDI 171
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 89.0 bits (221), Expect = 6e-20
Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 18/197 (9%)
Query: 121 TCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFE 180
+ D I ++ L + I + I+ + L + + N + + +
Sbjct: 27 AFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLDLSQN- 84
Query: 181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ 240
L L + NKL++++ L L LN N L L + L L+ +
Sbjct: 85 --TNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCAR 136
Query: 241 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 300
N ++ ID T L L N+ + L L N T L +
Sbjct: 137 NTLTEID---VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVS 188
Query: 301 GLGRLSALDLRGAGLTN 317
L+ L+ +T
Sbjct: 189 QNKLLNRLNCDTNNITK 205
Score = 84.0 bits (208), Expect = 3e-18
Identities = 35/196 (17%), Positives = 67/196 (34%), Gaps = 18/196 (9%)
Query: 122 CKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEP 181
C L I ++ N + L N+ T + + L +D S N++ + + +
Sbjct: 134 CARNTLTEIDVSHNTQLTELDCHLNKKITK-LDVTPQTQLTTLDCSFNKITELDVSQNK- 191
Query: 182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
L L + N ++ ++ L L+ N L ++ PL+ L D N
Sbjct: 192 --LLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVN 243
Query: 242 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 301
++ +D L+ L L+ L + L + +
Sbjct: 244 PLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-----AEGCRKIKELDVTH 295
Query: 302 LGRLSALDLRGAGLTN 317
+L LD + AG+T
Sbjct: 296 NTQLYLLDCQAAGITE 311
Score = 79.0 bits (195), Expect = 2e-16
Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 30/166 (18%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
N+ + + N + L N++ +D + + L + D S N L + + KL
Sbjct: 202 NITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLS---KL 256
Query: 186 VELQLNHNKLSSV---------------NNK----TFIGLKSLKVLNLRGNFLEDLPDRL 226
L L + K L +L+ + + +L
Sbjct: 257 TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD--- 313
Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT 272
+ L L L ++ +D T L+ L + ++ +
Sbjct: 314 LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSS 356
Score = 77.8 bits (192), Expect = 4e-16
Identities = 37/192 (19%), Positives = 64/192 (33%), Gaps = 19/192 (9%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
+ + +T + L +N+I +D + L ++ N + + + +L
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLDLNQNI---QL 214
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR 245
L + NKL+ ++ L L + N L +L + LS L L Q +
Sbjct: 215 TFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLE 268
Query: 246 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL 305
ID T L +Y R + + L L T L + +L
Sbjct: 269 ID---LTHNTQL--IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKL 320
Query: 306 SALDLRGAGLTN 317
L L LT
Sbjct: 321 VYLYLNNTELTE 332
Score = 72.8 bits (179), Expect = 2e-14
Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 29/169 (17%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRG------- 178
L I +T + N + +D + S L + L+ I +
Sbjct: 223 KLTEIDVTPLTQLTYFDCSVNPLTELDVSTL--SKLTTLHCIQTDLLEIDLTHNTQLIYF 280
Query: 179 ------------FEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
+L L ++ ++ L L L L +L
Sbjct: 281 QAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD--- 334
Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
+ + L+ L I + AL + + Q ++P +
Sbjct: 335 VSHNTKLKSLSCVNAHIQDFS--SVGKIPALNNNFEAEGQTITMPKETL 381
Score = 62.4 bits (152), Expect = 4e-11
Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 14/135 (10%)
Query: 183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNR 242
V ++ + L +L L+ + + D+ L+ L +L N
Sbjct: 21 ASEVAAAFEMQATDTI---SEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75
Query: 243 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 302
I+ +D T L L D N+L ++ L L L N T L +
Sbjct: 76 ITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKL---DVSQN 126
Query: 303 GRLSALDLRGAGLTN 317
L+ L+ LT
Sbjct: 127 PLLTYLNCARNTLTE 141
Score = 46.6 bits (111), Expect = 6e-06
Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 8/122 (6%)
Query: 196 SSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLT 255
+ + + + ++ L+ L LD + I+ + E LT
Sbjct: 7 QTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLT 64
Query: 256 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 315
L L N + ++ L L N T L L +L+ L+ L
Sbjct: 65 GLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKL 118
Query: 316 TN 317
T
Sbjct: 119 TK 120
Score = 43.9 bits (104), Expect = 4e-05
Identities = 16/123 (13%), Positives = 43/123 (34%), Gaps = 6/123 (4%)
Query: 122 CKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEP 181
C+ A + + ++ NP + L L + +D + + L+ + + + + G P
Sbjct: 304 CQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIP 361
Query: 182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
L + ++ +T + + + + L+ + + D N
Sbjct: 362 --ALNNNFEAEGQTITMPKETL--TNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATN 417
Query: 242 RIS 244
I+
Sbjct: 418 TIT 420
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 84.3 bits (209), Expect = 4e-19
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 12/167 (7%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D++ +Q + I+++ + +QF+++L+ + LSHNQ+ ++ + KL E
Sbjct: 33 DLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLS--PLKDLTKLEE 89
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L +N N+L ++N I L L L N L D L +LE L + N++ I
Sbjct: 90 LSVNRNRLKNLNG---IPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV 144
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL 294
L+ L +L L N++ + L + + +
Sbjct: 145 --MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187
Score = 69.3 bits (170), Expect = 1e-13
Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 32/192 (16%)
Query: 141 LVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIP--------------------IRGFE 180
+ + I V ++ +L + ++ + G +
Sbjct: 2 SIQRPTPINQV-FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQ 60
Query: 181 PQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQ 240
L EL L+HN++S ++ L L+ L++ N L++L P + L L L
Sbjct: 61 FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDN 115
Query: 241 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 300
N + D L L IL + +N+L+S+ +L L L + N T
Sbjct: 116 NELRDTD--SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNTGG--LT 169
Query: 301 GLGRLSALDLRG 312
L +++ +DL G
Sbjct: 170 RLKKVNWIDLTG 181
Score = 64.3 bits (157), Expect = 4e-12
Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 15/153 (9%)
Query: 166 LSHNQLVNI-PIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
+ + P G V+ L ++ + + L ++ N + ++ L
Sbjct: 4 QRPTPINQVFPDPGLA---NAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLAG 58
Query: 225 RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 284
++L+EL L N+IS + + LT L L ++ N+L+++ + I L+ L
Sbjct: 59 --MQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNL---NGIPSACLSRL 111
Query: 285 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
+ N L L L +R L +
Sbjct: 112 FLDNNELRDTDS--LIHLKNLEILSIRNNKLKS 142
Score = 64.3 bits (157), Expect = 4e-12
Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 8/140 (5%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ ++ L + NR+K + + I + L + L +N+L + + L
Sbjct: 77 DLSPLKDLTKLEELSVNRNRLKNL-NGIPS-ACLSRLFLDNNELRDTD--SLIHLKNLEI 132
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L + +NKL S+ L L+VL+L GN + + L + +DL +
Sbjct: 133 LSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEP 188
Query: 248 QACFEGLTALRILYLDDNQL 267
L + D +
Sbjct: 189 VKYQPELYITNTVKDPDGRW 208
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 84.8 bits (209), Expect = 3e-18
Identities = 34/181 (18%), Positives = 70/181 (38%), Gaps = 13/181 (7%)
Query: 138 IQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSS 197
+ + IK + ++ +L + + + ++ N++ + S
Sbjct: 1 MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS 57
Query: 198 VNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTAL 257
V L ++ L L GN L D+ L +L L L +N+I + + L L
Sbjct: 58 VQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKL 111
Query: 258 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 317
+ L L+ N + + ++L L L +G N T + + L +L L L +++
Sbjct: 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISD 167
Query: 318 M 318
+
Sbjct: 168 I 168
Score = 82.1 bits (202), Expect = 2e-17
Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 7/147 (4%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ + ++ L L++N I + + + L+ + L +N++ +I KL
Sbjct: 101 DLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDT 157
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L N++S + GL L+ L L N + DL A L +L+ L+L
Sbjct: 158 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 213
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPS 274
L + D L + S
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIIS 240
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 80.5 bits (199), Expect = 4e-18
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 6/129 (4%)
Query: 140 RLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVN 199
L I+ +D+ + + +H+ LS N + I E L L L N + +
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKIE 86
Query: 200 NKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALR 258
N + +L+ L + N + L L +L L + N+I+ + L L
Sbjct: 87 NLDAV-ADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143
Query: 259 ILYLDDNQL 267
L L N L
Sbjct: 144 DLLLAGNPL 152
Score = 55.5 bits (134), Expect = 2e-09
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
+++ L L N IK +++ +L+ + +S+NQ+ + + G E L L +++NK+
Sbjct: 70 ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKI 127
Query: 196 SSVNN-KTFIGLKSLKVLNLRGNFLEDLPD----------RLFAPLSHLEELD 237
++ L L+ L L GN L + + L +L++LD
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
Score = 50.5 bits (121), Expect = 1e-07
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 7/119 (5%)
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEG 253
+ + ++ L+ +E + L + L + L L N I +I G
Sbjct: 13 IFEERKSVVATEAEKVE-LHGMIPPIEKMDATL-STLKACKHLALSTNNIEKISS--LSG 68
Query: 254 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
+ LRIL L N ++ + L EL + N +L+ L L L +
Sbjct: 69 MENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSN 124
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 82.5 bits (203), Expect = 5e-18
Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 24/138 (17%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
CP C + + + C + +L + +
Sbjct: 1 CPDACCPHGSS-GLRCTRDGALDSL---------------------HHLPGAENLTELYI 38
Query: 167 SHNQ-LVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
+ Q L ++ +R +L L + + L V F L LNL N LE L +
Sbjct: 39 ENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98
Query: 226 LFAPLSHLEELDLGQNRI 243
LS L+EL L N +
Sbjct: 99 TVQGLS-LQELVLSGNPL 115
Score = 80.6 bits (198), Expect = 3e-17
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK-LSSVNNKTFIGLKSLKVLNLRGN 217
+ + + ++ E L EL + + + L + + GL L+ L + +
Sbjct: 8 HGSSGLRCTRDGALDSL-HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR 268
L + F L L+L N + + +GL+ L+ L L N L
Sbjct: 67 GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116
Score = 73.6 bits (180), Expect = 7e-15
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRIDQAC 250
+ + G ++L L + L+ L R L L L + ++ + +
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 251 FEGLTALRILYLDDNQLRSVPTPSFIYL 278
F L L L N L S+ + L
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGL 103
Score = 72.5 bits (177), Expect = 1e-14
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDL-GQNRISRIDQACFEGLTALRILYLDDNQLR 268
+ R L+ L +L EL + Q + ++ GL LR L + + LR
Sbjct: 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69
Query: 269 SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 316
V +F + L+ L + N +L+ GL L L L G L
Sbjct: 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116
Score = 30.9 bits (69), Expect = 0.65
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLV 172
P + RL L +N ++++ SLQ + LS N L
Sbjct: 80 PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 81.9 bits (203), Expect = 7e-18
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 15/195 (7%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D++ P L L+ + S LQH+ + L+ +P + L
Sbjct: 73 DLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLET 131
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRG-NFLEDLPDRL--------FAPLSHLEELDL 238
L L N L ++ + L L+ L++R L +LP+ L L +L+ L L
Sbjct: 132 LTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190
Query: 239 GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV-GLNVFTTLADG 297
I + A L L+ L + ++ L ++ P+ +L L EL + G
Sbjct: 191 EWTGIRSLP-ASIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRNYPPI 248
Query: 298 AFNGLGRLSALDLRG 312
F G L L L+
Sbjct: 249 -FGGRAPLKRLILKD 262
Score = 58.0 bits (141), Expect = 9e-10
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH-NKL 195
++Q L L++ I+++ ++I +L+ + + ++ L + KL EL L L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTAL 242
Query: 196 SSVNNKTFIGLKSLKVLNLRG-NFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ--ACFE 252
+ F G LK L L+ + L LP + L+ LE+LDL + + +
Sbjct: 243 RNYPP-IFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGC--VNLSRLPSLIA 298
Query: 253 GLTALRILYLDDNQLRSVP 271
L A I+ + + +
Sbjct: 299 QLPANCIILVPPHLQAQLD 317
Score = 37.6 bits (88), Expect = 0.004
Identities = 18/132 (13%), Positives = 27/132 (20%), Gaps = 23/132 (17%)
Query: 206 LKSLKVLNLRG-NFLEDLPDRL-------------------FAPLSHLEELDLGQNRISR 245
+ L +G L D L A ++ + +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70
Query: 246 IDQACFEG-LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR 304
+ L L L P L L + + L D
Sbjct: 71 TADLLEDATQPGRVALELRSVPLPQFP-DQAFRLSHLQHMTIDAAGLMELPD-TMQQFAG 128
Query: 305 LSALDLRGAGLT 316
L L L L
Sbjct: 129 LETLTLARNPLR 140
Score = 35.7 bits (83), Expect = 0.014
Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 2/82 (2%)
Query: 146 NRIKTVDSAIQFYSSLQHVDLSH-NQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFI 204
++ + L+ + L + L+ +P +L +L L S
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Query: 205 GLKSLKVLNLRGNFLEDLPDRL 226
L + ++ + + L
Sbjct: 299 QLPANCIILVPPHLQAQLDQHR 320
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 78.8 bits (195), Expect = 7e-18
Identities = 37/94 (39%), Positives = 52/94 (55%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L+L NKL S+ + F L L L+L N ++ LPD +F L+ L L L +N++ +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 281
F+ LT L+ L LD NQL+SVP F L L
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126
Score = 75.4 bits (186), Expect = 1e-16
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 25/160 (15%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
CP C C+ + C L +P + S RL L+ N
Sbjct: 1 CPSRCSCSGTE--IRCNSKGLTSVPTGIPSSATRLELESN-------------------- 38
Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
+L ++P F+ +L +L L+ N++ S+ + F L L +L L N L+ LP+ +
Sbjct: 39 ---KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV 95
Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ 266
F L+ L+EL L N++ + F+ LT+L+ ++L N
Sbjct: 96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135
Score = 68.1 bits (167), Expect = 6e-14
Identities = 38/103 (36%), Positives = 54/103 (52%)
Query: 210 KVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
L L N L+ LP +F L+ L +L L QN+I + F+ LT L ILYL +N+L+S
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 270 VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
+P F L L EL + N ++ DG F+ L L + L
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133
Score = 40.3 bits (95), Expect = 3e-04
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 310
++ L L+ N+L+S+P F L L +L + N +L DG F+ L +L+ L L
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 81.7 bits (201), Expect = 2e-17
Identities = 43/221 (19%), Positives = 73/221 (33%), Gaps = 19/221 (8%)
Query: 52 ILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDC 111
+ L V L+ + + W LL L+ +
Sbjct: 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL------- 399
Query: 112 DCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQL 171
ETL +D + ++ L N + Y+ ++ + L+H L
Sbjct: 400 -YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL-----KMEYADVRVLHLAHKDL 453
Query: 172 VNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLS 231
+ E + L L+HN+L ++ L+ L+VL N LE++ A L
Sbjct: 454 TVLC--HLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVDG--VANLP 508
Query: 232 HLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVP 271
L+EL L NR+ + L +L L N L
Sbjct: 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549
Score = 77.1 bits (189), Expect = 1e-15
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 5/120 (4%)
Query: 130 IPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQ 189
+ ++ L L + + + ++ + H+DLSHN+L +P L LQ
Sbjct: 435 VLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQ 492
Query: 190 LNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEELDLGQNRISRIDQ 248
+ N L +V+ L L+ L L N L+ + L L+L N + + +
Sbjct: 493 ASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550
Score = 69.0 bits (168), Expect = 4e-13
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
+ L L +NR++ + A+ L+ + S N L N+ G +L EL L +N+L
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRL 520
Query: 196 SSVNN-KTFIGLKSLKVLNLRGNFLEDLPD---RLFAPLSHLEELD 237
+ + L +LNL+GN L RL L + +
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566
Score = 59.8 bits (144), Expect = 4e-10
Identities = 38/223 (17%), Positives = 68/223 (30%), Gaps = 27/223 (12%)
Query: 112 DCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQL 171
+ + V+ + + R L + + S ++ LQ ++ +
Sbjct: 325 SDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWC 384
Query: 172 VNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGL---------------------KSLK 210
+ I + L+ + S++ + ++
Sbjct: 385 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR 444
Query: 211 VLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSV 270
VL+L L L L + LDL NR+ + L L +L DN L +V
Sbjct: 445 VLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 501
Query: 271 PTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRG 312
L L EL + N A RL L+L+G
Sbjct: 502 --DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 76.5 bits (189), Expect = 7e-17
Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 6/144 (4%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ I +I+ L + + I S+L+ + + + + I L
Sbjct: 58 DLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGN-FLEDLPDRLFAPLSHLEELDLGQNRISRI 246
L ++H+ L + ++L N + D+ L L+ L++ + +
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY 174
Query: 247 DQACFEGLTALRILYLDDNQLRSV 270
E L LY +
Sbjct: 175 R--GIEDFPKLNQLYAFSQTIGGK 196
Score = 70.0 bits (172), Expect = 2e-14
Identities = 28/176 (15%), Positives = 61/176 (34%), Gaps = 9/176 (5%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
+ +L + + A +SL ++ L++ + ++ G E + +L +N+ +
Sbjct: 24 AYLNGLLGQSSTANITEA--QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHAT 79
Query: 197 SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTA 256
+ N GL +L+ L + G + + L+ L LD+ + L
Sbjct: 80 NYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137
Query: 257 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 312
+ + L N + P L L L + + +L+ L
Sbjct: 138 VNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFS 190
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 78.0 bits (193), Expect = 4e-16
Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 15/189 (7%)
Query: 130 IPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLV-NIPIRGFEPQEKLVEL 188
+ ++ +++ L + N T + S+LQH+D+S N+L + R +L L
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLL 252
Query: 189 QLNHNKLS----SVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAPLSHLEELDLGQNRI 243
++ N+ + LKSL+ L+L N ++PD L L LDL N
Sbjct: 253 NISSNQFVGPIPPLP------LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 244 SRIDQACFEGLTALRILYLDDNQLR-SVPTPSFIYLGMLAELRVGLNVFT-TLADGAFNG 301
F + L L L N +P + + + L L + N F+ L + N
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Query: 302 LGRLSALDL 310
L LDL
Sbjct: 367 SASLLTLDL 375
Score = 70.3 bits (173), Expect = 2e-13
Identities = 52/195 (26%), Positives = 74/195 (37%), Gaps = 18/195 (9%)
Query: 130 IPITLNPSIQRLVLKYNRIK-TVDSAIQFY-SSLQHVDLSHNQLV-NIPIRGFEPQEKLV 186
IP S+Q L L N+ + + +L +DLS N +P F L
Sbjct: 263 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLE 321
Query: 187 ELQLNHNKLS-SVNNKTFIGLKSLKVLNLRGNFLED-LPDRLFAPLSHLEELDLGQNRIS 244
L L+ N S + T + ++ LKVL+L N LP+ L + L LDL N S
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 245 -RI-DQACFEGLTALRILYLDDNQLR-SVPTPSFIYLGMLAELRVGLNVFTTLADGA--- 298
I C L+ LYL +N +P P+ L L + N + G
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYLS----GTIPS 436
Query: 299 -FNGLGRLSALDLRG 312
L +L L L
Sbjct: 437 SLGSLSKLRDLKLWL 451
Score = 69.6 bits (171), Expect = 3e-13
Identities = 39/188 (20%), Positives = 62/188 (32%), Gaps = 11/188 (5%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLV-NIPIRGFEPQ-EKLVELQLNHN 193
++ L L + I S + +SL +DLS N L + L L ++ N
Sbjct: 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136
Query: 194 KLS-SVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAP--LSHLEELDLGQNRIS-RIDQ 248
L + L SL+VL+L N + L+ L + N+IS +D
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD- 195
Query: 249 ACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSAL 308
L L + N S P L L + N + A + L L
Sbjct: 196 --VSRCVNLEFLDVSSNNF-STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Query: 309 DLRGAGLT 316
++
Sbjct: 253 NISSNQFV 260
Score = 63.4 bits (155), Expect = 3e-11
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 7/161 (4%)
Query: 136 PSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLV-NIPIRGFEPQEKLVELQLNHN 193
++Q L L+ N + + S L + LS N L IP KL +L+L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLN 452
Query: 194 KLSSVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
L + + +K+L+ L L N L ++P L ++L + L NR++
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIG 511
Query: 253 GLTALRILYLDDNQLR-SVPTPSFIYLGMLAELRVGLNVFT 292
L L IL L +N ++P L L + N+F
Sbjct: 512 RLENLAILKLSNNSFSGNIP-AELGDCRSLIWLDLNTNLFN 551
Score = 49.9 bits (120), Expect = 6e-07
Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 17/146 (11%)
Query: 132 ITLNPSIQRLVLKYNRIK---TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE----- 183
I + + N ++ + S+ +++ G
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY-----GGHTSPTFDNNG 632
Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAPLSHLEELDLGQNR 242
++ L +++N LS K + L +LNL N + +PD L L LDL N+
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNK 691
Query: 243 IS-RIDQACFEGLTALRILYLDDNQL 267
+ RI QA LT L + L +N L
Sbjct: 692 LDGRIPQA-MSALTMLTEIDLSNNNL 716
Score = 48.8 bits (117), Expect = 1e-06
Identities = 37/195 (18%), Positives = 62/195 (31%), Gaps = 23/195 (11%)
Query: 128 DVIPITL--NPSIQRLVLKYNRIK-TVDSAIQFYSSLQHVDLSHNQLV-NIPIRGFEPQE 183
IP + ++ L L N + + + SL +DL+ N IP Q
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP-AAMFKQS 562
Query: 184 KLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE---DLPDRLFAPLSHLEELDLGQ 240
+ N ++ K + GN LE ++L LS ++
Sbjct: 563 GK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITS 617
Query: 241 NRISRIDQACFEGLTALRILYLDDNQLR-SVPTPSFIYLGMLAELRVGLNVFTTLADG-- 297
F+ ++ L + N L +P + L L +G N + G
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP-KEIGSMPYLFILNLGHNDIS----GSI 672
Query: 298 --AFNGLGRLSALDL 310
L L+ LDL
Sbjct: 673 PDEVGDLRGLNILDL 687
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 76.1 bits (187), Expect = 6e-16
Identities = 37/196 (18%), Positives = 65/196 (33%), Gaps = 18/196 (9%)
Query: 130 IPITLNPSIQRLVLKYNRIKTVDSAIQ-----FYSSLQHVDLSHNQLVNIPIRGFEPQEK 184
+ P + L L+ T D+ + L+ + ++ +N
Sbjct: 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174
Query: 185 LVELQLNHNKLSS----VNNKTFIGLKSLKVLNLRGNFLEDLPD---RLFAPLSHLEELD 237
L L L+ N ++ + +L+VL LR +E L A L+ LD
Sbjct: 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234
Query: 238 LGQNRISRI-DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 296
L N + + + L L L L+ VP L+ L + N
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPS 291
Query: 297 GAFNGLGRLSALDLRG 312
+ L ++ L L+G
Sbjct: 292 --PDELPQVGNLSLKG 305
Score = 74.9 bits (184), Expect = 2e-15
Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 14/175 (8%)
Query: 127 LDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE-- 183
L + L P ++ L + ++ + +L +DLS N +
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199
Query: 184 --KLVELQLNHNKLSSVN---NKTFIGLKSLKVLNLRGNFLEDLPDRL-FAPLSHLEELD 237
L L L + + + + + L+ L+L N L D S L L+
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259
Query: 238 LGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
L + ++ + L +L L N+L P+P L + L + N F
Sbjct: 260 LSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPSPDE--LPQVGNLSLKGNPFL 309
Score = 67.2 bits (164), Expect = 7e-13
Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 18/198 (9%)
Query: 137 SIQRLVLKYNRI--KTVDSAIQF--YSSLQHVDLSHNQLV-NIPIRGFEPQ-EKLVELQL 190
S++RL ++ RI + + A++ S LQ + L + ++ P E L L L
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 191 NHNKLSSVNNKT----FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR- 245
+ ++ + LKVL++ + L LDL N
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188
Query: 246 ---IDQACFEGLTALRILYLDDNQLRSVPTP---SFIYLGMLAELRVGLNVFTTL-ADGA 298
I C L++L L + + + L L + N +
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248
Query: 299 FNGLGRLSALDLRGAGLT 316
+ +L++L+L GL
Sbjct: 249 CDWPSQLNSLNLSFTGLK 266
Score = 53.7 bits (129), Expect = 2e-08
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 24/110 (21%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFY----SSLQHVDLSHNQLVNIPIR-GFEPQEKLVELQL 190
P++Q L L+ ++T LQ +DLSHN L + + +L L L
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260
Query: 191 NHNKLSSV--------------NNK-----TFIGLKSLKVLNLRGNFLED 221
+ L V N+ + L + L+L+GN D
Sbjct: 261 SFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 68.9 bits (169), Expect = 2e-14
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 147 RIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRG-FEPQEKLVELQLNHNKLSSVNNKTFIG 205
R ++ + S ++ + L +++ + G + E+L L + L+S+ N
Sbjct: 5 RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPK 62
Query: 206 LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDD 264
L LK L L N + + L +L L+L N+I + + L L+ L L +
Sbjct: 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122
Query: 265 N 265
Sbjct: 123 C 123
Score = 60.1 bits (146), Expect = 2e-11
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 137 SIQRLVLKYNRIK--TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK 194
++ LVL +R ++ + L+ + + L +I KL +L+L+ N+
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLELSDNR 75
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEELDLGQNRISRID 247
+S +L LNL GN ++DL L +L+ LDL ++ ++
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129
Score = 57.0 bits (138), Expect = 3e-10
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 183 EKLVELQLNHNKLSSVNNKTFIG-LKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
+ EL L++++ + + + L+ L+ L + + L+ L++L+L N
Sbjct: 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDN 74
Query: 242 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 286
R+S + E L L L N+++ + T L L L+
Sbjct: 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLST--IEPLKKLENLKS 117
Score = 44.7 bits (106), Expect = 6e-06
Identities = 27/116 (23%), Positives = 40/116 (34%), Gaps = 5/116 (4%)
Query: 198 VNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTAL 257
+ N+T +K L + N R N + L LE L ++ I L L
Sbjct: 11 LRNRTPSDVKELVLDNSRSNEGKLE--GLTDEFEELEFLSTINVGLTSIAN--LPKLNKL 66
Query: 258 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRG 312
+ L L DN++ L L + N L+ L L +LDL
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 67.8 bits (166), Expect = 7e-14
Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 7/123 (5%)
Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
V L+ + + + EL L K+ + N L ++ N + L
Sbjct: 2 VKLTAELIEQAA--QYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLD 58
Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
F L L+ L + NRI RI + + L L L L +N L + L L
Sbjct: 59 G--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD--LDPLASLKS 114
Query: 284 LRV 286
L
Sbjct: 115 LTY 117
Score = 66.6 bits (163), Expect = 2e-13
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 137 SIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLS 196
+ L L+ +I +++ +D S N++ + GF +L L +N+N++
Sbjct: 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVNNNRIC 77
Query: 197 SVNNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEELDLGQNRISRID 247
+ L L L L N L +L D A L L L + +N ++
Sbjct: 78 RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129
Score = 65.4 bits (160), Expect = 5e-13
Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNF 218
+ +DL ++ I G ++ + + N++ ++ F L+ LK L + N
Sbjct: 19 VRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNR 75
Query: 219 LEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVP 271
+ + + L L L EL L N + + L +L L + N + +
Sbjct: 76 ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129
Score = 55.0 bits (133), Expect = 2e-09
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
++L + + + L+LRG + + + L A L + +D N I ++D
Sbjct: 2 VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD 58
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLS 306
F L L+ L +++N++ + L L EL + N L D L L+
Sbjct: 59 --GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116
Query: 307 ALDLRG 312
L +
Sbjct: 117 YLCILR 122
Score = 50.8 bits (122), Expect = 6e-08
Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 5/118 (4%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
+ N I+ +D L+ + +++N++ I + L EL L +N L
Sbjct: 42 DQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100
Query: 196 SSVNN-KTFIGLKSLKVLNLRGNFLEDLPD---RLFAPLSHLEELDLGQNRISRIDQA 249
+ + LKSL L + N + + + + + LD + ++ +A
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEA 158
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 65.9 bits (161), Expect = 3e-13
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 156 QFYSSLQHVDLSHNQLVNIPIRGF-EPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL 214
+ ++++ + L + + + I G L L L + L SV+N L LK L L
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLEL 78
Query: 215 RGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVP 271
N + D L L +L L+L N++ I + L L+ L L + ++ ++
Sbjct: 79 SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136
Score = 65.1 bits (159), Expect = 5e-13
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 141 LVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNN 200
L + ++ + +L+ + L + L+++ KL +L+L+ N++ +
Sbjct: 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS--NLPKLPKLKKLELSENRIFGGLD 88
Query: 201 KTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEELDLGQNRISRID---QACFEGLTA 256
L +L LNL GN L+D+ L L+ LDL ++ ++ ++ F+ L
Sbjct: 89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148
Query: 257 LRIL 260
L L
Sbjct: 149 LTYL 152
Score = 55.9 bits (135), Expect = 1e-09
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 6/129 (4%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIG-LKSLKVLNLRGN 217
S + + +++ +R P + EL L++ K + + +L+ L+L
Sbjct: 1 GSSGSSGMDMKRRIHLELRNRTPAA-VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV 59
Query: 218 FLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY 277
L + + L L++L+L +NRI E L L L L N+L+ + T
Sbjct: 60 GLISVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST--LEP 115
Query: 278 LGMLAELRV 286
L L L+
Sbjct: 116 LKKLECLKS 124
Score = 47.0 bits (112), Expect = 1e-06
Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 5/126 (3%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
+ + + N+T ++ L VL+ + + L A +LE L L + +
Sbjct: 8 MDMKRRIHLELRNRTPAAVREL-VLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISVS 65
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLS 306
L L+ L L +N++ L L L + N ++ L L
Sbjct: 66 --NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123
Query: 307 ALDLRG 312
+LDL
Sbjct: 124 SLDLFN 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 60.7 bits (148), Expect = 2e-11
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
+ +VL L N + L +F L+ L LDL N+++ + F+ LT L L L+DNQL
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 268 RSVPTPSFIYLGML 281
+S+P +F L L
Sbjct: 91 KSIPRGAFDNLKSL 104
Score = 56.9 bits (138), Expect = 5e-10
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRI 246
L L N+++ + F L L L+L N L LP +F L+ L +L L N++ I
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 247 DQACFEGLTALRILYLDDN 265
+ F+ L +L ++L +N
Sbjct: 94 PRGAFDNLKSLTHIWLLNN 112
Score = 55.7 bits (135), Expect = 1e-09
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 25/135 (18%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
CP C C+ T V C +L +P + I ++ Q + L
Sbjct: 3 CPSQCSCSGTT--VDCSGKSLASVP---------------------TGIP--TTTQVLYL 37
Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
NQ+ + F+ +L L L++N+L+ + F L L L+L N L+ +P
Sbjct: 38 YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97
Query: 227 FAPLSHLEELDLGQN 241
F L L + L N
Sbjct: 98 FDNLKSLTHIWLLNN 112
Score = 53.0 bits (128), Expect = 1e-08
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 234 EELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
+ L L N+I++++ F+ LT L L LD+NQL +P F L L +L + N +
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 294 LADGAFNGLGRLSALDLRG 312
+ GAF+ L L+ + L
Sbjct: 93 IPRGAFDNLKSLTHIWLLN 111
Score = 42.6 bits (101), Expect = 4e-05
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 311
T ++LYL DNQ+ + F L L L + N T L G F+ L +L+ L L
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 60.3 bits (147), Expect = 3e-11
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
+ L L N + L +F L +L++L N+++ I F+ LT L L L+DN L
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Query: 268 RSVPTPSFIYLGML 281
+S+P +F L L
Sbjct: 94 KSIPRGAFDNLKSL 107
Score = 56.1 bits (136), Expect = 9e-10
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 26/141 (18%)
Query: 101 HQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSS 160
H ++ CP C C+ V C+ L +P + I +
Sbjct: 1 HHSAG-CPSQCSCDQTL--VNCQNIRLASVP---------------------AGIP--TD 34
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE 220
Q + L++NQ+ + F+ L +L N NKL+++ F L L L+L N L+
Sbjct: 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 221 DLPDRLFAPLSHLEELDLGQN 241
+P F L L + L N
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNN 115
Score = 51.9 bits (125), Expect = 2e-08
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 234 EELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
+ L L N+I++++ F+ L L+ LY + N+L ++PT F L L +L + N +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 294 LADGAFNGLGRLSALDLRG 312
+ GAF+ L L+ + L
Sbjct: 96 IPRGAFDNLKSLTHIYLYN 114
Score = 42.6 bits (101), Expect = 4e-05
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 311
T + L+L++NQ+ + F +L L +L N T + G F+ L +L+ LDL
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 61.5 bits (150), Expect = 1e-10
Identities = 45/208 (21%), Positives = 73/208 (35%), Gaps = 46/208 (22%)
Query: 135 NPSIQRLVLKYNRIKTVD-----SAIQFYSSLQHVDLSHNQLVNIPIRGF-----EPQEK 184
+ IQ+L L+ + S ++ +LQ + LS N L + ++ +PQ +
Sbjct: 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143
Query: 185 LVELQLNHNKLSSVNNKTF----IGLKSLKVLNLRGNFLED-----LPDRLFAPLSHLEE 235
L +LQL + LS+ + + K L + N + + L L LE
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203
Query: 236 LDLGQNRISRIDQAC------FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
L L ++ C +LR L L N+L V GM
Sbjct: 204 LKLESCGVT--SDNCRDLCGIVASKASLRELALGSNKLGDV--------GMAE------- 246
Query: 290 VFTTLADGAFNGLGRLSALDLRGAGLTN 317
L G + RL L + G+T
Sbjct: 247 ----LCPGLLHPSSRLRTLWIWECGITA 270
Score = 60.4 bits (147), Expect = 2e-10
Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 23/156 (14%)
Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGF-----EPQEK 184
Q + L + K + SA++ +L ++L N+L ++ + P K
Sbjct: 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86
Query: 185 LVELQLNHNKLSSVNNK----TFIGLKSLKVLNLRGNFLED-----LPDRLFAPLSHLEE 235
+ +L L + L+ T L +L+ L+L N L D L + L P LE+
Sbjct: 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146
Query: 236 LDLGQNRISRID-QACFEGL---TALRILYLDDNQL 267
L L +S + L + L + +N +
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Score = 58.4 bits (142), Expect = 9e-10
Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 23/156 (14%)
Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGF-----EPQEK 184
++ L L+ + + + + +SL+ + L N+L ++ + P +
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257
Query: 185 LVELQLNHNKLSSVNNKTF----IGLKSLKVLNLRGNFLED-----LPDRLFAPLSHLEE 235
L L + +++ +SLK L+L GN L D L + L P LE
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317
Query: 236 LDLGQNRISRID-QACFEGL---TALRILYLDDNQL 267
L + + L L L + +N+L
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353
Score = 52.7 bits (127), Expect = 7e-08
Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 23/149 (15%)
Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGF-----EPQEK 184
++ L +K S + L + +S+N+L + +R +P
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371
Query: 185 LVELQLNHNKLSSVNNKTF----IGLKSLKVLNLRGNFLED-----LPDRLFAPLSHLEE 235
L L L +S + + + SL+ L+L N L D L + + P LE+
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 431
Query: 236 LDLGQNRISRIDQACFEGL----TALRIL 260
L L S + + L +LR++
Sbjct: 432 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 460
Score = 48.8 bits (117), Expect = 1e-06
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 18/125 (14%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQ-EKLVELQLNHNKLSSVN----NKTFIGLKSLKVLN 213
+Q +D+ +L + P ++ ++L+ L+ + +L LN
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 214 LRGNFLED-----LPDRLFAPLSHLEELDLGQNRISRIDQAC------FEGLTALRILYL 262
LR N L D + L P +++L L ++ C L L+ L+L
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT--GAGCGVLSSTLRTLPTLQELHL 120
Query: 263 DDNQL 267
DN L
Sbjct: 121 SDNLL 125
Score = 44.2 bits (105), Expect = 3e-05
Identities = 32/151 (21%), Positives = 49/151 (32%), Gaps = 35/151 (23%)
Query: 132 ITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191
+ S++ L L N + + A +L P +L L +
Sbjct: 280 LRAKESLKELSLAGNEL-GDEGARLLCETLLE-----------------PGCQLESLWVK 321
Query: 192 HNKLSSVNNKTFIGL----KSLKVLNLRGNFLED-----LPDRLFAPLSHLEELDLGQNR 242
++ F + + L L + N LED L L P S L L L
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381
Query: 243 ISRIDQAC------FEGLTALRILYLDDNQL 267
+S D +C +LR L L +N L
Sbjct: 382 VS--DSSCSSLAATLLANHSLRELDLSNNCL 410
Score = 30.7 bits (70), Expect = 0.60
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGF-----EPQEK 184
++ L L + ++ + + SL+ +DLS+N L + I +P
Sbjct: 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 428
Query: 185 LVELQLNHNKLSSVNNKTFIGL----KSLKVLN 213
L +L L S L SL+V++
Sbjct: 429 LEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.0 bits (147), Expect = 2e-10
Identities = 61/378 (16%), Positives = 121/378 (32%), Gaps = 132/378 (34%)
Query: 11 KVQGQLD-EIFWI---------DILD-VTYILYKLHPGFQNNPK--SNFKSPTEILKSLL 57
KVQ ++D +IFW+ +L+ + +LY++ P + + SN K +++
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-- 232
Query: 58 IIPFEVRILNKLRIFINDSVLFSSVSDITMWS-------LLVTT-------AL------- 96
E+R L K + + N ++ +V + W+ +L+TT L
Sbjct: 233 ----ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 97 LLLVHQASAFCPPDCDCNDETL-----VVTCKEANL-----DVIPITLNPSIQRLV---- 142
+ L H + P DE + C+ +L P L+ I +
Sbjct: 289 ISLDHHSMTLTP------DEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-IIAESIRDGL 341
Query: 143 -----LKYNRIKTVDSAIQ-FYSSLQHVDLSHN--QL------VNIPIR----------G 178
K+ + + I+ + L+ + +L +IP
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 179 FEPQEKLVELQLNHNK-LSSVNNKTF-IGLKSL------KVLNLRG---------NFLED 221
+ + +L H L K I + S+ K+ N N +
Sbjct: 402 SDVMVVVNKL---HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 222 LPDRLFAPLS-----------HLEELDLGQNRISRIDQACFEGLTALRILYLD----DNQ 266
P HL+ ++ + +T R+++LD + +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPER------------MTLFRMVFLDFRFLEQK 506
Query: 267 LRSVPTPSFIYLGMLAEL 284
+R T +L L
Sbjct: 507 IRHDSTAWNASGSILNTL 524
Score = 31.0 bits (69), Expect = 0.65
Identities = 33/196 (16%), Positives = 60/196 (30%), Gaps = 71/196 (36%)
Query: 187 ELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELD--LGQ-NRI 243
E Q + + SV F+ + +D+ D + LS EE+D + + +
Sbjct: 13 EHQYQYKDILSVFEDAFV--DNFDC--------KDVQDMPKSILSK-EEIDHIIMSKDAV 61
Query: 244 SRID--------------QACFEGL-------------------TALRILYLD------- 263
S Q E + + + +Y++
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 264 DNQL---RSVPTPS-FIYL-GMLAELRVGLNVFTTLADGAFNGLGR--LSALDLRGAGLT 316
DNQ+ +V ++ L L ELR NV DG G G+ ++ +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---DGVL-GSGKTWVALDVCLSYKVQ 177
Query: 317 NMMGHSMALGDYLHWI 332
M + W+
Sbjct: 178 CKMDFKI------FWL 187
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 54.7 bits (132), Expect = 1e-08
Identities = 37/230 (16%), Positives = 68/230 (29%), Gaps = 49/230 (21%)
Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQFYSSLQHVDLSHNQLVNIPIR----GFEPQEKL 185
SI+ LK + I K+V + + S++ + LS N + R ++ L
Sbjct: 3 RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62
Query: 186 VELQLNHNKLSSVNNKTFIGLK----------SLKVLNLRGNFLEDLPDRLFAPL----S 231
+ + V ++ L+ L + L N +
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122
Query: 232 HLEELDLGQNRIS-------------RIDQACFEGLTALRILYLDDNQLRSVPTPS---- 274
LE L L N + + LR + N+L +
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182
Query: 275 FIYLGMLAELRVGLNVFTTLADGAFNGLGR-------LSALDLRGAGLTN 317
F +L +++ N +G + L L LDL+ T+
Sbjct: 183 FQSHRLLHTVKMVQNGIR--PEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230
Score = 49.7 bits (119), Expect = 6e-07
Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 27/160 (16%)
Query: 135 NPSIQRLVLKYNRI------KTVDSAIQFYSSLQHVDLSHNQLVNIPIR----GFEPQEK 184
+ + + + N I + + + L+ +DL N ++ +
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245
Query: 185 LVELQLNHNKLSSVNNKTFI-GLK-----SLKVLNLRGNFLED-----LPDRLFAPLSHL 233
L EL LN LS+ + L+ L L+ N +E L + + L
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305
Query: 234 EELDLGQNRISRIDQAC------FEGLTALRILYLDDNQL 267
L+L NR S D F + LDD +
Sbjct: 306 LFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEE 345
Score = 44.7 bits (106), Expect = 2e-05
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 39/174 (22%)
Query: 132 ITLNPSIQRLVLKYNRI--------------KTVDSAIQFYSSLQHVDLSHNQLVNIPIR 177
++ + ++ L L N + V+ + L+ + N+L N ++
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177
Query: 178 ----GFEPQEKLVELQLNHNKLSSVNNKTFIGL-----KSLKVLNLRGNFLED-----LP 223
F+ L +++ N + + + + LKVL+L+ N L
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237
Query: 224 DRLFAPLSHLEELDLGQNRISRIDQAC---FEGL-----TALRILYLDDNQLRS 269
L +L EL L +S + + L+ L L N++
Sbjct: 238 IAL-KSWPNLRELGLNDCLLS--ARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 53.6 bits (129), Expect = 3e-08
Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 19/127 (14%)
Query: 159 SSLQHVDLSHNQLVNIPIRGF-----EPQEKLVELQLNHNKLSSVNNKTFI-GLKSLKVL 212
SSL+ ++L+ ++ + + L E+ L +L +T + + L
Sbjct: 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131
Query: 213 NLRGNFLED-----LPDRLFAPLSHLEELDLGQNRISRIDQAC---FEGL---TALRILY 261
L+ N L L D L + L L N ++ EGL T++ L
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT--AAGVAVLMEGLAGNTSVTHLS 189
Query: 262 LDDNQLR 268
L L
Sbjct: 190 LLHTGLG 196
Score = 35.5 bits (82), Expect = 0.018
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 20/130 (15%)
Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQFYSSLQHVDLSHNQL----VNIPIRGFEPQEKL 185
I L L N + + + +S+ H+ L H L + + + +L
Sbjct: 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL 213
Query: 186 VELQLNHNKLSSVNNKTF-IGLK---SLKVLNLRGNFLED-----LPDRLFA--PLSHLE 234
EL + +N + SL++L+L N L L D A + +
Sbjct: 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVV 273
Query: 235 ELDLGQNRIS 244
+S
Sbjct: 274 VSLTEGTAVS 283
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 53.3 bits (129), Expect = 3e-08
Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 15/121 (12%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQE----KLVELQLNHNKLSSVNNKTFIGLKSLKVLNL 214
+ +S N+L G P L + L+ N L + F K+ + ++L
Sbjct: 174 KLFTSMTISRNRLT-----GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 215 RGNFLE-DLPDRLFAPLSHLEELDLGQNRIS-RIDQACFEGLTALRILYLDDNQLR-SVP 271
N L DL +L LDL NRI + Q L L L + N L +P
Sbjct: 229 AKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIP 285
Query: 272 T 272
Sbjct: 286 Q 286
Score = 45.2 bits (108), Expect = 1e-05
Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 31/161 (19%)
Query: 159 SSLQHVDLSHNQLV-NIP------------------IRGFEPQE-----KLVELQLNHNK 194
+ L ++ ++H + IP + G P LV + + N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 195 LSSVNNKTFIGLKSL-KVLNLRGNFLE-DLPDRLFAPLSHLEELDLGQNRIS-RIDQACF 251
+S ++ L + + N L +P +L +DL +N + F
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVL-F 217
Query: 252 EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 292
+ ++L N L + L L + N
Sbjct: 218 GSDKNTQKIHLAKNSL-AFDLGKVGLSKNLNGLDLRNNRIY 257
Score = 42.9 bits (102), Expect = 8e-05
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 7/114 (6%)
Query: 184 KLVELQLNHNKLS-SVNNKTFIG-LKSLKVLNLRG-NFLE-DLPDRLFAPLSHLEELDLG 239
++ L L+ L + + L L L + G N L +P + L+ L L +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYIT 109
Query: 240 QNRISRIDQACFEGLTALRILYLDDNQLR-SVPTPSFIYLGMLAELRVGLNVFT 292
+S + L L N L ++P PS L L + N +
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRIS 162
Score = 31.0 bits (71), Expect = 0.45
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 130 IPITL--NPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLV-NIPIRGFEPQEKLV 186
+ + + Q++ L N + + +L +DL +N++ +P +G + L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLH 271
Query: 187 ELQLNHNKLS 196
L ++ N L
Sbjct: 272 SLNVSFNNLC 281
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 49.7 bits (119), Expect = 5e-07
Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 30/161 (18%)
Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQFY-SSLQHVDLSHNQLVNIPIRGF-----EPQE 183
S+ L L N + + + +++ ++LS N L
Sbjct: 50 PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF 109
Query: 184 KLVELQLNHNKLSSVNNKTFIGL-----KSLKVLNLRGNFLED-----LPDRLFAPLSHL 233
+ L L N SS ++ F S+ LNLRGN L L L A +++
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169
Query: 234 EELDLGQNRISRIDQACF---EGL----TALRILYLDDNQL 267
L+L N ++ + C + L ++ L L N L
Sbjct: 170 NSLNLRGNNLA--SKNCAELAKFLASIPASVTSLDLSANLL 208
Score = 49.3 bits (118), Expect = 7e-07
Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 29/163 (17%)
Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQ-FYSSLQHVDLSHNQLVNIPIRGF-----EPQE 183
+I L L +N A +S+ ++L N L
Sbjct: 108 PFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167
Query: 184 KLVELQLNHNKLSSVNNKTFIGL-----KSLKVLNLRGNFLED-----LPDRLFAPLSHL 233
+ L L N L+S N S+ L+L N L L + +H+
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227
Query: 234 EELDLGQNRISRIDQAC------FEGLTALRILYLDDNQLRSV 270
L+L N + + + L L+ +YLD + ++++
Sbjct: 228 VSLNLCLNCLH--GPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268
Score = 45.5 bits (108), Expect = 1e-05
Identities = 32/131 (24%), Positives = 47/131 (35%), Gaps = 24/131 (18%)
Query: 159 SSLQHVDLSHNQLVNIPIRGF-----EPQEKLVELQLNHNKLSSVNNKTFI-GLKS---- 208
+ +DLS N L +I + L L+ N L N+ + L +
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 209 LKVLNLRGNFLED-----LPDRLFAPLSHLEELDLGQNRISRIDQAC---FEGL----TA 256
+ LNL GNFL L L A + LDLG N S ++ + +
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS--SKSSSEFKQAFSNLPAS 139
Query: 257 LRILYLDDNQL 267
+ L L N L
Sbjct: 140 ITSLNLRGNDL 150
Score = 44.7 bits (106), Expect = 2e-05
Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 22/134 (16%)
Query: 133 TLNPSIQRLVLKYNRIKTV------DSAIQFYSSLQHVDLSHNQLVNIPIRGF-----EP 181
+ ++ L L+ N + + +S+ +DLS N L
Sbjct: 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223
Query: 182 QEKLVELQLNHNKLSSVNNKTFIGL----KSLKVLNLRGNFLEDLPDRLFAPL------- 230
+V L L N L + + L K L+ + L + ++++ L
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283
Query: 231 SHLEELDLGQNRIS 244
+ +D I
Sbjct: 284 QKIILVDKNGKEIH 297
Score = 33.1 bits (76), Expect = 0.097
Identities = 16/163 (9%), Positives = 49/163 (30%), Gaps = 29/163 (17%)
Query: 133 TLNPSIQRLVLKYNRI-----KTVDSAIQFY-SSLQHVDLSHNQLVNIPIR----GFEPQ 182
++ S+ L L N + + + + ++L N L + +
Sbjct: 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252
Query: 183 EKLVELQLNHNKLSSVNNKTFIGL-------KSLKVLNLRGNFLED-----LPDRLFAPL 230
+ L + L+++ + +++ + L + + +++ G + + + +
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELS 312
Query: 231 SHLEELDLGQNRISRIDQACFEGLTALRI------LYLDDNQL 267
+ L + Q + L I L
Sbjct: 313 GKADVPSLLNQCLIFA-QKHQTNIEDLNIPDELRESIQTCKPL 354
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 1e-06
Identities = 58/390 (14%), Positives = 109/390 (27%), Gaps = 133/390 (34%)
Query: 13 QGQLDEIFWIDILDVTYILYKLHPGFQNNPKSNFKSPTEILKSLLIIPFEVRILNKLRIF 72
QG D+ ++ ++ D LY+ + K E L L+ +
Sbjct: 163 QGNTDD-YFEELRD----LYQTYHVL---VGDLIKFSAETLSELIRTTLDA--------- 205
Query: 73 INDSVLFSSVSDITMW----------SLLVTTAL---LLLVHQASAFCPPDCDCNDETLV 119
+F+ +I W L++ + L+ V Q + +
Sbjct: 206 ---EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV------------ 250
Query: 120 VTCKEANLDVIPITLNPSIQRLVLKYNRI----------------KTVDSAIQ--FYSSL 161
VT K P L ++ + +V AI F+ +
Sbjct: 251 VTAKLLGFT--PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 162 Q------HVDLSHNQLV-------NIP-----IRGFEPQEKLVELQLNHNKLSSVNNKTF 203
+ + L + L +P I QE++ + N +
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN-LTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 204 IGLKSLKVLNLRGNF-LEDLPDRLFAPLSHLEEL----DLGQNRI---SR--IDQACFEG 253
I L N N + P L+ L + L Q+RI R F
Sbjct: 368 ISLV-----NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-- 420
Query: 254 LTALRI------LYLD---DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR 304
L + L D + + + + ++++ V+ T DG+
Sbjct: 421 ---LPVASPFHSHLLVPASDLINKDLVKNNVSFNA--KDIQI--PVYDT-FDGS------ 466
Query: 305 LSALDLRGAGLTNMMGHS---MALGDYLHW 331
DLR L+ + + + W
Sbjct: 467 ----DLR--VLSGSISERIVDCIIRLPVKW 490
Score = 48.9 bits (116), Expect = 2e-06
Identities = 66/332 (19%), Positives = 106/332 (31%), Gaps = 100/332 (30%)
Query: 27 VTYILYKLHPGFQNNPKSNFKSPTEILKSLLIIPFEVRILNKLRIFINDSVLFSSVSDIT 86
VT L PG +S K T + L+ +V +
Sbjct: 251 VTAKLLGFTPG---ELRSYLKGATGHSQGLVT-----------------AVAIAETDSWE 290
Query: 87 MWSLLVTTALLLL------VHQASAFC--PP----DCDCNDET-----LVVTCKEANLDV 129
+ + V A+ +L ++A PP D N+E L ++ NL
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS----NLT- 345
Query: 130 IPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL--SHNQLVNIPIRGFEPQEKL-- 185
+Q V K N + + L LV + G P + L
Sbjct: 346 -----QEQVQDYVNKTNSHLPAGKQV-------EISLVNGAKNLV---VSG--PPQSLYG 388
Query: 186 VELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPL--SHLEE------LD 237
+ L L K S +++ I K L FL P + +P L D
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERK-LKFSNRFL---P--VASPFHSHLLVPASDLINKD 442
Query: 238 LGQNRISRIDQACFEGLTALRI-LY--LDDNQLRSVP---TPSFIYLGMLAELRV---GL 288
L +N +S F ++I +Y D + LR + + + + L V
Sbjct: 443 LVKNNVS------FNA-KDIQIPVYDTFDGSDLRVLSGSISERIVD--CIIRLPVKWETT 493
Query: 289 NVF--TTLAD---GAFNGLGRLSALDLRGAGL 315
F T + D G +GLG L+ + G G+
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKDGTGV 525
Score = 32.7 bits (74), Expect = 0.20
Identities = 29/234 (12%), Positives = 67/234 (28%), Gaps = 83/234 (35%)
Query: 3 PTRKYVK------RKVQGQLDEIFWIDILDVTYILYKLHPGFQNNPKS-NFKSPTEILKS 55
P + ++++ + + I+D K+ + S F+S +L +
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 56 -------LLIIPFEVRILNKLR---IFINDSVL-------FSSVSDITMWSLLVTTA--- 95
L ++ E L+ + D+ +++ L + A
Sbjct: 1729 TQFTQPALTLM--EKAAFEDLKSKGLIPADATFAGHSLGEYAA---------LASLADVM 1777
Query: 96 ----LLLLVHQ----ASAFCPPD---------CDCNDETLVVTCKEANLDVI-------- 130
L+ +V P D N + + + L +
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 131 -----PITLN-PSIQ-----------RL--VLKYNRIKTVD-SAIQFYSSLQHV 164
+ N + Q + VL + +++ +D +Q SL+ V
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 28.5 bits (63), Expect = 3.7
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 25/102 (24%)
Query: 188 LQLNHNKLS---SVNNKTFIGLKSLKVLNLRGNFLEDLPDR---------------LFAP 229
L L+H L V +F L+ F + LP+ L
Sbjct: 9 LTLSHGSLEHVLLVPTASFF-----IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 230 -LSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSV 270
L ++ L + +++ + DQ LT YL+ N + ++
Sbjct: 64 FLGYVSSL-VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 42.1 bits (99), Expect = 3e-05
Identities = 21/135 (15%), Positives = 32/135 (23%), Gaps = 37/135 (27%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
CP C C V C L ++ +A + L
Sbjct: 2 CPAPCSCAGTL--VDCGRRGL-------------------TWASLPTAF--PVDTTELVL 38
Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKL--------------SSVNNKTFIGLKSLKVL 212
+ N L +P + L L N + L+ +
Sbjct: 39 TGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAPP 98
Query: 213 NLRGNFLEDLPDRLF 227
LRG L L +
Sbjct: 99 ALRGRLLPYLAEDEL 113
Score = 40.2 bits (94), Expect = 2e-04
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 215 RGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR 268
RG LP EL L N ++ + + L ALR +L N R
Sbjct: 18 RGLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68
Score = 37.1 bits (86), Expect = 0.002
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
L L GN L LP L L L LG N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 34.4 bits (79), Expect = 0.015
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 255 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
L L N L ++P L L +G N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 42.2 bits (98), Expect = 1e-04
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 16/102 (15%)
Query: 159 SSLQHVDL---SHNQLVNIPIRGFEP------QEKLVELQLNHNKLSSVNNKTFIG---L 206
+L+ + L + + + F P L L + + +V + F+ L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278
Query: 207 KSLKVLNLRGNFLEDLPDRLFA----PLSHLEELDLGQNRIS 244
L+ +++ L D RL + HL+ +++ N +S
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
Score = 35.3 bits (80), Expect = 0.025
Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 22/157 (14%)
Query: 189 QLNHNKLSSVNNKTFIGLKS--LKVLNLRGNFL--EDLPDRLFAPLSHLEELDLGQNRIS 244
LN+ K+ NN + LK L + L + D L + L +LE+L L
Sbjct: 173 LLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED 232
Query: 245 RIDQACFEGLTA---------LRILYLDDNQLRSVPTPSFIYLGMLAELRV---GLNVFT 292
L+ L + D + ++V F+ +L +L V T
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292
Query: 293 -----TLADGAFNGLGRLSALDLRGAGLTNMMGHSMA 324
L D + + L ++++ L++ M +
Sbjct: 293 DEGARLLLD-HVDKIKHLKFINMKYNYLSDEMKKELQ 328
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 37.3 bits (86), Expect = 0.005
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 123 KEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQF----YSSLQHVDLSHNQLVNI-PIR 177
+ +L + + Q + + NR + + ++ L ++LS+N+L + +
Sbjct: 130 QALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMS 189
Query: 178 G-FEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
+ L L L+ N+L S I L+ L L GN
Sbjct: 190 SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 230
Score = 34.6 bits (79), Expect = 0.034
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 206 LKSLKVLNLRGNFLEDLPD--RLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYL 262
+ L LNL N L L D + +L+ L+L N + + +GL L L+L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWL 227
Query: 263 DDNQL 267
D N L
Sbjct: 228 DGNSL 232
Score = 34.2 bits (78), Expect = 0.037
Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 179 FEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDL 238
++ ++ ++L+ + V + L + +E+ + L L+L
Sbjct: 125 YDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEEN-------IPELLSLNL 177
Query: 239 GQNRISRIDQ--ACFEGLTALRILYLDDNQLRSV 270
NR+ R+D + + L+IL L N+L+S
Sbjct: 178 SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 36.4 bits (84), Expect = 0.006
Identities = 17/121 (14%), Positives = 43/121 (35%), Gaps = 7/121 (5%)
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRG-NFLEDLPDRLFAPLSH--- 232
G + K+ + + + S+ GL+ ++ + L +++ED + L +
Sbjct: 55 TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK 114
Query: 233 -LEELDLGQN-RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG-MLAELRVGLN 289
+ E+++ ++ L+ L+L D L L + L+
Sbjct: 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKLD 174
Query: 290 V 290
+
Sbjct: 175 L 175
Score = 27.5 bits (61), Expect = 4.7
Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 25/119 (21%)
Query: 161 LQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNK---------LSSVNNKTFIGLKSLKV 211
+Q +D + + +++I E + + +++L LS + N KS+
Sbjct: 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQ----KSMLE 118
Query: 212 LNLRGNF------LEDLPDRLFAPLSHLEELDLGQ-NRISRIDQACFEGLTALRILYLD 263
+ + + L +L+ L L + ++ T+L L L
Sbjct: 119 MEIISCGNVTDKGIIAL-----HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 33.8 bits (77), Expect = 0.086
Identities = 25/199 (12%), Positives = 56/199 (28%), Gaps = 13/199 (6%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQE-- 183
L P ++ V L+ V + ++ +
Sbjct: 79 KLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARAD 138
Query: 184 KLVELQLNH-NKLSSVNNKTFI-GLKSLKVLNLRGNFLEDLPDRLFAPLS----HLEELD 237
L L+L+ + ++ + + + +K L + + + + L+ LE L+
Sbjct: 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN 198
Query: 238 LGQNRISRIDQACFE----GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 293
++I E +L + + D ++ + F L E G
Sbjct: 199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDI 257
Query: 294 LADGAFNGLGRLSALDLRG 312
+ L L G
Sbjct: 258 GMPEKYMNLVFPRKLCRLG 276
Score = 28.0 bits (62), Expect = 4.6
Identities = 30/218 (13%), Positives = 59/218 (27%), Gaps = 37/218 (16%)
Query: 73 INDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPI 132
I+ L + + + +L + + + + +
Sbjct: 207 ISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266
Query: 133 TLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
+ RL L Y + F + ++ +DL + L E L
Sbjct: 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET---------EDHCTLIQKC 317
Query: 193 NKLSSVNNKTFIG----------LKSLKVLNLRGNFLEDLPDRLFAPLS----------- 231
L + + IG K LK L + E + +S
Sbjct: 318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377
Query: 232 -HLEELDLGQNRIS-----RIDQACFEGLTALRILYLD 263
LE + + + I+ I + L R++ LD
Sbjct: 378 QELEYMAVYVSDITNESLESIGTYL-KNLCDFRLVLLD 414
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 31.4 bits (71), Expect = 0.27
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 207 KSLKVLNLRGNFLEDLPDRLFAPL-------SHLEELDLGQNRISRID-QACFEGL---T 255
LK +N+ N ++ + L H+E+ L IS + + E +
Sbjct: 41 TDLKEVNI--NNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP 98
Query: 256 ALRILYLDDNQL 267
+LR+L ++ N L
Sbjct: 99 SLRVLNVESNFL 110
Score = 27.1 bits (60), Expect = 6.4
Identities = 16/102 (15%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 135 NPSIQRLVLKYNRIKTVDS-----AIQFYSSLQHVDLSHNQL----VNIPIRGFEPQEKL 185
+ I++ L I ++ I+ SL+ +++ N L + +R + +
Sbjct: 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSI 128
Query: 186 VELQLNHNKLSSVNNKTFIGL-------KSLKVLNLRGNFLE 220
VE + ++ + S + N+ + + +SL + + +E
Sbjct: 129 VEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 31.8 bits (72), Expect = 0.38
Identities = 32/183 (17%), Positives = 55/183 (30%), Gaps = 45/183 (24%)
Query: 159 SSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVN------NKTFIGL------ 206
+L+ +DL + + ++ L + L S+N +F L
Sbjct: 156 RNLKELDLRESDVDDVSGHW------LSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209
Query: 207 -KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDN 265
+LK L L + L LEEL G + + + GL+
Sbjct: 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT-AEVRPDVYSGLSVA-------- 260
Query: 266 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF----NGLGRLSALDLRGAGLTNMMGH 321
L ELR L+ F + RL+ L+L A + +
Sbjct: 261 ------------LSGCKELRC-LSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307
Query: 322 SMA 324
+
Sbjct: 308 KLL 310
Score = 27.9 bits (62), Expect = 4.9
Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 22/148 (14%)
Query: 139 QRLVLKYNRIKTVDSAIQFYSSLQHVDLSH------NQLVNIPIRGFEPQ---------E 183
+++ + + + I+ + ++ V+L LV G+
Sbjct: 46 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105
Query: 184 KLVELQLNHNKLSSVNNKTFI-GLKSLKVLNLRG--NFLEDLPDRLFAPLSHLEELDLGQ 240
L E++L ++ + K+ KVL L F D + A +L+ELDL +
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165
Query: 241 NRISRID----QACFEGLTALRILYLDD 264
+ + + + T+L L +
Sbjct: 166 SDVDDVSGHWLSHFPDTYTSLVSLNISC 193
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 29.8 bits (67), Expect = 1.3
Identities = 33/202 (16%), Positives = 70/202 (34%), Gaps = 16/202 (7%)
Query: 122 CKEANLDVIPITLNPSIQRLVLKYNRI---KTVDSAIQFYSSLQHVDLSH-NQLVNIPIR 177
+ ++ V + N ++ RL L + + + S L ++LS ++
Sbjct: 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187
Query: 178 GFEPQ--EKLVELQLNHNKLSSVNNKTFI----GLKSLKVLNLRG-NFLEDLPDRLFAPL 230
E + +L L+ + ++ +L L+L L++ + F L
Sbjct: 188 VAVAHVSETITQLNLSGYR-KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 246
Query: 231 SHLEELDLGQNRISRIDQACFEGLTALRIL-YLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
++L+ L L +R I L + L L + T + L L++ +
Sbjct: 247 NYLQHLSL--SRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA-LPHLQINCS 303
Query: 290 VFTTLADGAFNGLGRLSALDLR 311
FTT+A ++
Sbjct: 304 HFTTIARPTIGNKKNQEIWGIK 325
Score = 28.3 bits (63), Expect = 3.6
Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 1/108 (0%)
Query: 132 ITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191
+ + S+ + + + D + S ++ P+ ++ + L+
Sbjct: 42 LASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS 101
Query: 192 HNKLSSVNNKTFI-GLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDL 238
++ + + L+ L+L G L D A S+L L+L
Sbjct: 102 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 28.8 bits (65), Expect = 1.6
Identities = 16/143 (11%), Positives = 44/143 (30%), Gaps = 36/143 (25%)
Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQFYSSLQHVDLSHNQL-----VNIPIRGFEPQEK 184
N +++ + R + ++ ++L+ +++ N + + + + +
Sbjct: 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL-VEALQSNTS 122
Query: 185 LVELQLNHNKLSSVNNKTFIGLKSLKVLN--LRGNFLEDLPDRLFAPLSHLEELDLGQNR 242
L+EL+++ N +G + L N + L + +
Sbjct: 123 LIELRID-------NQSQPLGNNVEMEIANMLEKN-------------TTLLKFGYHFTQ 162
Query: 243 IS---RIDQACFEGLTALRILYL 262
R A +R L
Sbjct: 163 QGPRLRASNAMMNNNDLVRKRRL 185
Score = 27.3 bits (61), Expect = 6.3
Identities = 21/150 (14%), Positives = 40/150 (26%), Gaps = 38/150 (25%)
Query: 135 NPSIQRLVL-KYNRI-----KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVEL 188
+P ++ + L I K A++ + ++ + + L E+
Sbjct: 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS------NDPVAFALAEM 88
Query: 189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPL----SHLEELDLGQNRIS 244
L N +LK LN+ NF+ + L EL +
Sbjct: 89 -LKVNN-------------TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQS-Q 133
Query: 245 RIDQACFEGL-------TALRILYLDDNQL 267
+ + T L Q
Sbjct: 134 PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163
>3fqi_A Protein DOM3Z, DOM-3 homolog Z; hydrolase, protein binding; HET:
EPE; 2.01A {Mus musculus} PDB: 3fqj_A*
Length = 417
Score = 27.8 bits (61), Expect = 4.9
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 146 NRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL-------VELQLNHNKLSSV 198
+ V++ + + S L+ +H L + + PQ VEL+ + S
Sbjct: 225 DPSGEVNTNVAYCSVLRSRLGNHPLLFSGEVDCLNPQAPCTQPPSCYVELKTSKEMHSPG 284
Query: 199 NNKTFIGLKSLK 210
++F K LK
Sbjct: 285 QWRSFYRHKLLK 296
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 27.8 bits (62), Expect = 6.1
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 193 NKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
+ L + F +LK +L + LP F + +EE+ L + I F
Sbjct: 166 STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFL 223
Query: 253 GLTALRILYLDDN 265
+ L+ + + +N
Sbjct: 224 KTSQLKTIEIPEN 236
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.412
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,953,490
Number of extensions: 290604
Number of successful extensions: 3391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 932
Number of HSP's successfully gapped: 435
Length of query: 332
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 238
Effective length of database: 4,077,219
Effective search space: 970378122
Effective search space used: 970378122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)