RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8550
(332 letters)
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 81.4 bits (199), Expect = 3e-18
Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 3/229 (1%)
Query: 107 CPPDCDCNDET-LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQ-H 163
CP C C +E + +C + L +P+ + + QR+ L NRI V ++ + +L
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61
Query: 164 VDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLP 223
S+ ++ +L SV+ TF GL L L+L L++L
Sbjct: 62 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121
Query: 224 DRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 283
LF L+ L+ L L N + + F L L L+L N++ SVP +F L L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 284 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332
L + N + AF LGRL L L L+ + ++A L ++
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230
Score = 57.1 bits (136), Expect = 5e-10
Identities = 46/159 (28%), Positives = 67/159 (42%), Gaps = 3/159 (1%)
Query: 156 QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215
+ ++LQ++ L N L +P F L L L+ N++SSV + F GL SL L L
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185
Query: 216 GNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 275
N + + F L L L L N +S + L AL+ L L+DN +
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RAR 244
Query: 276 IYLGMLAELRVGLNVFTTLADGAFNG--LGRLSALDLRG 312
L + R + G L RL+A DL+G
Sbjct: 245 PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 76.2 bits (186), Expect = 2e-16
Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 33/228 (14%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
CP C C+ V C + L+ +P L P L DL
Sbjct: 4 CPFRCQCHLRV--VQCSDLGLEKVPKDLPPDTALL-----------------------DL 38
Query: 167 SHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRL 226
+N++ I F+ + L L L +NK+S ++ F L L+ L L N L++LP+++
Sbjct: 39 QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 98
Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP--SFIYLGMLAEL 284
L L + N I+++ ++ F GL + ++ L N L+S +F + L+ +
Sbjct: 99 PKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155
Query: 285 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALGDYLHWI 332
R+ TT+ G L+ L L G +T + S+ + L +
Sbjct: 156 RIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKL 200
Score = 59.3 bits (142), Expect = 1e-10
Identities = 49/264 (18%), Positives = 98/264 (37%), Gaps = 15/264 (5%)
Query: 58 IIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDET 117
I + + L L I + S +S L+ L L +Q E
Sbjct: 46 IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 105
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV---DSAIQFYSSLQHVDLSHNQLVNI 174
V + + + + L N +K+ + A Q L ++ ++ + I
Sbjct: 106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 165
Query: 175 PIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
P L EL L+ NK++ V+ + GL +L L L N + + + A HL
Sbjct: 166 PQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 222
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR--VGLNV-- 290
EL L N++ ++ ++++YL +N + ++ + F G + G+++
Sbjct: 223 ELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281
Query: 291 ----FTTLADGAFNGLGRLSALDL 310
+ + F + +A+ L
Sbjct: 282 NPVQYWEIQPSTFRCVYVRAAVQL 305
Score = 51.2 bits (121), Expect = 6e-08
Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 10/217 (4%)
Query: 55 SLLIIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCN 114
L +P ++ + + + S + ++ L ++S
Sbjct: 90 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 115 DETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVDLSHNQLVN 173
+ + + N+ IP L PS+ L L N+I VD ++++ ++L + LS N +
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209
Query: 174 IPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAP---- 229
+ L EL LN+NKL V K ++V+ L N + + F P
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYN 268
Query: 230 --LSHLEELDLGQNRIS--RIDQACFEGLTALRILYL 262
+ + L N + I + F + + L
Sbjct: 269 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 65.0 bits (157), Expect = 2e-12
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 13/185 (7%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D+ P+ + ++ L L N++K + + + ++L +DL++NQ+ N+ KL E
Sbjct: 211 DITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLA--PLSGLTKLTE 267
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L+L N++S+++ GL +L L L N + L +L L L N IS I
Sbjct: 268 LKLGANQISNISP--LAGLTALTNLELNENQ--LEDISPISNLKNLTYLTLYFNNISDIS 323
Query: 248 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 307
LT L+ L+ +N++ V S L + L G N + L L R++
Sbjct: 324 P--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLT--PLANLTRITQ 377
Query: 308 LDLRG 312
L L
Sbjct: 378 LGLND 382
Score = 62.7 bits (151), Expect = 1e-11
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 9/138 (6%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
++ P++ + L L N+I + +L N+ I + L
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQLEDISPISNLKNLTY 311
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L N +S ++ L L+ L N + D+ A L+++ L G N+IS +
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLT 367
Query: 248 QACFEGLTALRILYLDDN 265
LT + L L+D
Sbjct: 368 --PLANLTRITQLGLNDQ 383
Score = 39.6 bits (91), Expect = 4e-04
Identities = 10/79 (12%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 183 EKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNR 242
+ ++ L ++ + L + L ++ + L++L +++ N+
Sbjct: 22 AEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQ 77
Query: 243 ISRIDQACFEGLTALRILY 261
++ I + LT L +
Sbjct: 78 LTDITP--LKNLTKLVDIL 94
Score = 37.7 bits (86), Expect = 0.001
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D + T + L IK++D +++ ++L ++ S+NQL +I + KLV+
Sbjct: 36 DTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVD 92
Query: 188 LQLNHN 193
+ +N+N
Sbjct: 93 ILMNNN 98
Score = 35.0 bits (79), Expect = 0.010
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 205 GLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDD 264
L L + D + L + L + I ID E L L + +
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSN 75
Query: 265 NQLRSVP 271
NQL +
Sbjct: 76 NQLTDIT 82
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 61.3 bits (147), Expect = 2e-11
Identities = 49/207 (23%), Positives = 74/207 (35%), Gaps = 7/207 (3%)
Query: 109 PDCDCNDET--LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVD-SAIQFYSSLQHVD 165
P C+ + L V C + NL +P L L L N + T + + Y+ L ++
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 166 LSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDR 225
L +L + + G P + + L +L VL++ N L LP
Sbjct: 62 LDRAELTKLQVDGTLPV---LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 226 LFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 285
L L+EL L N + + L L L +N L +P L L L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 286 VGLNVFTTLADGAFNGLGRLSALDLRG 312
+ N T+ G F L L G
Sbjct: 179 LQENSLYTIPKGFFG-SHLLPFAFLHG 204
Score = 38.9 bits (89), Expect = 5e-04
Identities = 30/161 (18%), Positives = 50/161 (31%), Gaps = 2/161 (1%)
Query: 58 IIPFEVRILNKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCNDET 117
+ +L D + + +L T L Q+
Sbjct: 46 FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105
Query: 118 LVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL-SHNQLVNIPI 176
V + +L + + +Q L LK N +KT+ + + ++N L +P
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165
Query: 177 RGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGN 217
E L L L N L ++ F G L L GN
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205
Score = 28.9 bits (63), Expect = 0.78
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 132 ITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQL 171
+ ++ L+L+ N + T+ L L N
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 58.7 bits (140), Expect = 5e-11
Identities = 47/164 (28%), Positives = 64/164 (39%), Gaps = 5/164 (3%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKT--VDSAIQFYSSLQHV 164
CP C C T V C L IP + L+L N + D L +
Sbjct: 2 CPAMCHCEGTT--VDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKL 59
Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
+L NQL I FE + ELQL NK+ ++NK F+GL LK LNL N + +
Sbjct: 60 ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
Query: 225 RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR 268
F L+ L L+ + + LR L+ R
Sbjct: 120 GSFEHLNSLTSLN-LASNPFNCNCHLAWFAEWLRKKSLNGGAAR 162
Score = 33.6 bits (75), Expect = 0.019
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISR-IDQACFEGLTALRILYLDDNQ 266
++ G L+++P + H EL L N + R F L L L L NQ
Sbjct: 9 EGTTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65
Query: 267 LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNMMGHSMALG 326
L + +F + EL++G N +++ F GL +L L+L ++ +M S
Sbjct: 66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 327 DYLHWI 332
+ L +
Sbjct: 126 NSLTSL 131
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 57.9 bits (138), Expect = 4e-10
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ 248
N S+ SL+ LN+ N L +LP LE L N ++ +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVP- 320
Query: 249 ACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 286
E L+ L+++ N LR P + +LR+
Sbjct: 321 ---ELPQNLKQLHVEYNPLREFPD----IPESVEDLRM 351
Score = 53.3 bits (126), Expect = 1e-08
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 155 IQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL 214
SL+ +++S+N+L+ +P +L L + N L+ V ++LK L++
Sbjct: 280 CDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL----PQNLKQLHV 331
Query: 215 RGNFLEDLPDRLFAPLSHLEELDL 238
N L + PD +E+L +
Sbjct: 332 EYNPLREFPDI----PESVEDLRM 351
Score = 42.9 bits (99), Expect = 3e-05
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 207 KSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQ 266
+ L L L LP+ HLE L N ++ + E +L+ L +D+N
Sbjct: 38 RQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELP----ELPQSLKSLLVDNNN 89
Query: 267 LRSVP 271
L+++
Sbjct: 90 LKALS 94
Score = 41.3 bits (95), Expect = 9e-05
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 126 NLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
L +P P ++RL+ +N + V Q +L+ + + +N L P + E +
Sbjct: 295 KLIELPALP-PRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFP----DIPESV 346
Query: 186 VELQLN 191
+L++N
Sbjct: 347 EDLRMN 352
Score = 35.6 bits (80), Expect = 0.006
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 182 QEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQN 241
+ EL+LN+ LSS+ L+ L N L +LP+ L+ L + N
Sbjct: 37 DRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPEL----PQSLKSLLVDNN 88
Query: 242 RISRIDQAC 250
+ +
Sbjct: 89 NLKALSDLP 97
Score = 32.1 bits (71), Expect = 0.090
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 130 IPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQ 189
+ L+ L L + ++ L+ + S N L +P E + L L
Sbjct: 32 LRDCLDRQAHELELNNLGLSSLPELP---PHLESLVASCNSLTELP----ELPQSLKSLL 84
Query: 190 LNHNKLSSVNN 200
+++N L ++++
Sbjct: 85 VDNNNLKALSD 95
Score = 31.7 bits (70), Expect = 0.12
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
DC + L +P P ++ LV N + + SL+ + +
Sbjct: 31 RLRDCLDRQAH-ELELNNLGLSSLPELP-PHLESLVASCNSLTELPELP---QSLKSLLV 85
Query: 167 SHNQLVNIP 175
+N L +
Sbjct: 86 DNNNLKALS 94
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 46.6 bits (110), Expect = 3e-07
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 165 DLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPD 224
L+H L + E + L L+HN+L ++ L+ L+VL N LE++
Sbjct: 4 HLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG 60
Query: 225 RLFAPLSHLEELDLGQNRISRIDQ-ACFEGLTALRILYLDDNQLRSVP 271
P L+EL L NR+ + L +L L N L
Sbjct: 61 VANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106
Score = 44.3 bits (104), Expect = 2e-06
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 136 PSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
+ L L +NR++ + A+ L+ + S N L N+ G +L EL L +N+L
Sbjct: 20 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRL 77
Query: 196 SSVNN-KTFIGLKSLKVLNLRGNFL---EDLPDRLFAPLSHLEEL 236
+ + L +LNL+GN L E + +RL L + +
Sbjct: 78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
Score = 41.6 bits (97), Expect = 2e-05
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 139 QRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSV 198
+ L L + + + ++ + H+DLSHN+L L LQ + N L +V
Sbjct: 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENV 58
Query: 199 NNKTFIGLKSLKVLNLRGNFLEDLPD-RLFAPLSHLEELDLGQNRISRID 247
+ + L+ L L N L+ + L L+L N + + +
Sbjct: 59 DGVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106
Score = 38.2 bits (88), Expect = 2e-04
Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 6/110 (5%)
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRID 247
L L H L+ + + L + L+L N L LP A L LE L N + +D
Sbjct: 3 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59
Query: 248 QACFEGLTALRILYLDDNQLRSVPTP-SFIYLGMLAELRVGLNVFTTLAD 296
+ L L +N+L+ + L L + N
Sbjct: 60 GVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 47.1 bits (111), Expect = 3e-07
Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 5/144 (3%)
Query: 143 LKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKT 202
LK +++ + + L L + P Q V L + +++
Sbjct: 4 LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP--DLVAQNIDVVLNRRSSMAATLRI-I 60
Query: 203 FIGLKSLKVLNLRGNFLEDLPD--RLFAPLSHLEELDLGQNRISRIDQACFEGLTALRIL 260
+ L LNL N L L D + +L+ L+L N + + L L
Sbjct: 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 120
Query: 261 YLDDNQLRSVPTPSFIYLGMLAEL 284
+LD N L Y+ + E
Sbjct: 121 WLDGNSLSDTFRDQSTYISAIRER 144
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 46.1 bits (107), Expect = 2e-06
Identities = 40/218 (18%), Positives = 69/218 (31%), Gaps = 8/218 (3%)
Query: 59 IPFEVRIL----NKLRIFINDSVLFSSVSDITMWSLLVTTALLLLVHQASAFCPPDCDCN 114
+P L KLR+ + FS D+ + L ++ + P +
Sbjct: 27 LPRNAIELRFVLTKLRVIQKGA--FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 84
Query: 115 DETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNI 174
E + + + V L + + N
Sbjct: 85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 144
Query: 175 PIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLE 234
+ V L LN N + ++N F G + ++ N LE+LP+ +F S
Sbjct: 145 RNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 204
Query: 235 ELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT 272
LD+ + RI + E L LR L+ +PT
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT 240
Score = 44.1 bits (102), Expect = 8e-06
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 107 CP-PDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTV-DSAIQFYSSLQHV 164
C C C++ C+E+ + IP L + L +++ + A + L+ +
Sbjct: 1 CHHRICHCSNRV--FLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKI 58
Query: 165 DLSHNQ 170
++S N
Sbjct: 59 EISQND 64
Score = 35.7 bits (80), Expect = 0.005
Identities = 14/73 (19%), Positives = 27/73 (36%)
Query: 212 LNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 271
L L N ++++ + F E N + + F G + IL + ++ S+P
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217
Query: 272 TPSFIYLGMLAEL 284
+ L L
Sbjct: 218 SYGLENLKKLRAR 230
Score = 33.7 bits (75), Expect = 0.020
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNL 214
S + +++ IP +EL+ KL + F G L+ + +
Sbjct: 9 SNRVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 60
Score = 25.6 bits (54), Expect = 9.1
Identities = 6/49 (12%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 232 HLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM 280
+++++ I L +LR + +F G
Sbjct: 9 SNRVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGD 54
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 46.5 bits (108), Expect = 3e-06
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 10/102 (9%)
Query: 160 SLQHVDLSHNQLVNIPIRGFEPQ-EKLVELQLNHNKLSSVNNKTFI----GLKSLKVLNL 214
+Q +D+ +L + P ++ ++L+ L+ K +L LNL
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 215 RGNFLED-----LPDRLFAPLSHLEELDLGQNRISRIDQACF 251
R N L D + L P +++L L ++
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104
Score = 45.0 bits (104), Expect = 8e-06
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 15/99 (15%)
Query: 179 FEPQEKLVELQLNHNKLSSVNNK----TFIGLKSLKVLNLRGNFLED-----LPDRLFAP 229
+P L L L +S + T + SL+ L+L N L D L + + P
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 230 LSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLR 268
LE+L L S E L+ L D LR
Sbjct: 425 GCLLEQLVLYDIYWSE------EMEDRLQALEKDKPSLR 457
Score = 44.2 bits (102), Expect = 1e-05
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 185 LVELQLNHNKLSSVNNKTFI-GLKSLKVLNLRGNFLEDLPDRLFAP----LSHLEELDLG 239
+ L + +LS + L+ +V+ L L + + + L EL+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 240 QNRIS-----RIDQACFEGLTALRILYLDDNQ 266
N + + Q ++ L L +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
Score = 36.1 bits (81), Expect = 0.004
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 14/92 (15%)
Query: 135 NPSIQRLVLKYNRI-----KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGF-----EPQEK 184
++ L L + ++ + + SL+ +DLS+N L + I +P
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427
Query: 185 LVELQLNHNKLSSVNNKTFIGLK----SLKVL 212
L +L L S L+ SL+V+
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 34.2 bits (76), Expect = 0.021
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 132 ITLNPSIQRLVLKYNRI-----KTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLV 186
+ L Q + L + K + SA++ +L ++L N+L ++ + +
Sbjct: 23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82
Query: 187 ELQLNHNKLSSVNN 200
++ L +
Sbjct: 83 SCKIQKLSLQNCCL 96
Score = 33.0 bits (73), Expect = 0.043
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 10/101 (9%)
Query: 233 LEELDLGQNRISRID-QACFEGLTALRILYLDDNQLRSVP----TPSFIYLGMLAELRVG 287
++ LD+ +S L +++ LDD L + + LAEL +
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 288 LNVFT-----TLADGAFNGLGRLSALDLRGAGLTNMMGHSM 323
N + G ++ L L+ LT +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104
Score = 30.7 bits (67), Expect = 0.25
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 132 ITLNPSIQRLVLKYNRIKT------VDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKL 185
+ N S++ L L N + V+S Q L+ + L E +++L
Sbjct: 393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW------SEEMEDRL 446
Query: 186 VELQLNHNKLS 196
L+ + L
Sbjct: 447 QALEKDKPSLR 457
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 40.0 bits (92), Expect = 2e-04
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 156 QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215
LS + KL L+ + NK+S ++ L +L ++L+
Sbjct: 146 PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLK 203
Query: 216 GNFLEDLPDRLFAPLSHLEELDL 238
N + D+ A S+L + L
Sbjct: 204 NNQISDVSP--LANTSNLFIVTL 224
Score = 32.3 bits (72), Expect = 0.065
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 205 GLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDD 264
L + + + + D A L + L ++ I+ + L L L L D
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKD 72
Query: 265 NQLRSVPTPSFIYLGML 281
NQ+ + +
Sbjct: 73 NQITDLAPLKNLTKITE 89
Score = 30.8 bits (68), Expect = 0.18
Identities = 29/182 (15%), Positives = 49/182 (26%), Gaps = 41/182 (22%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
D + I L + T+ +Q+ ++L ++L NQ+ ++ + +E
Sbjct: 33 DTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELE 91
Query: 188 LQLNHNKLSSVNNKTFIGLKSLKVLNL--------------------------------- 214
L N K S
Sbjct: 92 LSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT 151
Query: 215 -----RGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRS 269
+ A LS L L N+IS I L L ++L +NQ+
Sbjct: 152 NLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISD 209
Query: 270 VP 271
V
Sbjct: 210 VS 211
Score = 30.4 bits (67), Expect = 0.26
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 3/96 (3%)
Query: 97 LLLVHQASAFCPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQ 156
L L P + + D+ P+ + L N+I + S +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI-SPLA 192
Query: 157 FYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNH 192
+L V L +NQ+ ++ L + L +
Sbjct: 193 SLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN 226
Score = 26.1 bits (56), Expect = 5.5
Identities = 7/68 (10%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 128 DVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVE 187
+ P + ++ + + + + + + I G + L+
Sbjct: 11 VIFPDPALANAIKIAAGKSNVTDTVTQADL-DGITTLSAFGTGVTTIE--GVQYLNNLIG 67
Query: 188 LQLNHNKL 195
L+L N++
Sbjct: 68 LELKDNQI 75
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 40.2 bits (92), Expect = 2e-04
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 189 QLNHNKLSS------VNNKTFIGLKSLKVLNLRGNFLED-----LPDRLFAPLSHLEELD 237
LN LS+ V+ + + L+ L L+ N +E L + + L L+
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308
Query: 238 LGQNRISRIDQACFE 252
L NR S D E
Sbjct: 309 LNGNRFSEEDDVVDE 323
Score = 36.0 bits (81), Expect = 0.004
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 178 GFEPQEKLVELQLNHNKLS-----SVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSH 232
L L+L +N++ ++ + L L L GN + D +
Sbjct: 268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327
Query: 233 LEELDLGQ 240
G+
Sbjct: 328 FSTRGRGE 335
Score = 35.2 bits (79), Expect = 0.008
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 213 NLRGNFLEDLPDRL-FAPLSHLEELDLGQNRISR-----IDQACFEGLTALRILYLDDNQ 266
L + D L+ L L N I + E + L L L+ N+
Sbjct: 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313
Query: 267 LRSVP 271
Sbjct: 314 FSEED 318
Score = 32.5 bits (72), Expect = 0.056
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 159 SSLQHVDLSHNQL-----VNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLN 213
LQ + L +N++ + E L+ L+LN N+ S + ++ +
Sbjct: 273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE-EDDVVDEIREVFSTR 331
Query: 214 LRGNFLE 220
RG E
Sbjct: 332 GRGELDE 338
Score = 31.4 bits (69), Expect = 0.14
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 25/121 (20%)
Query: 137 SIQRLVLKYNRIKTVD-----SAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLN 191
SI+ LK + I T D + + S++ + LS N + R
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS----------- 52
Query: 192 HNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACF 251
+ K L++ F + D + L L + L ++ + +
Sbjct: 53 ---------ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103
Query: 252 E 252
Sbjct: 104 A 104
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 38.6 bits (88), Expect = 7e-04
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLE-DLPDRLFAPLSHLEELDLGQNR 242
L +N++ + LK L LN+ N L ++P L + N+
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302
Score = 35.1 bits (79), Expect = 0.010
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 156 QFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLR 215
+L +DL +N++ +G + L L ++ N L L+ V
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-EIPQGGNLQRFDVSAYA 299
Query: 216 GN 217
N
Sbjct: 300 NN 301
Score = 32.4 bits (72), Expect = 0.063
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 213 NLRGNFLEDLPDRLFAPLSHLEELDLGQNRIS-RIDQACFEGLTALRILYLDDNQ-LRSV 270
+LR N + + L L L++ N + I Q L + +N+ L
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGS 307
Query: 271 PTPS 274
P P+
Sbjct: 308 PLPA 311
Score = 31.3 bits (69), Expect = 0.14
Identities = 15/59 (25%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 231 SHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 289
+L LDL NRI L L L + N L P L N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQGGNLQRFDVSAYANN 301
Score = 28.2 bits (61), Expect = 1.3
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 143 LKYNRIK-TVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKL 195
L+ NRI T+ + L +++S N L I ++ +NK
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-EIPQGGNLQRFDVSAYANNKC 303
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 37.5 bits (85), Expect = 7e-04
Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 5/152 (3%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVL---KYNRIKTVDS-AIQFYSSLQ 162
CP C + + + C L + L ++ ++ ++ L+
Sbjct: 1 CPDACCPHGSS-GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELR 59
Query: 163 HVDLSHNQLVNIPIRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDL 222
++ + + L + F +L L L+ N L S++ KT GL +++
Sbjct: 60 NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSC 119
Query: 223 PDRLFAPLSHLEELDLGQNRISRIDQACFEGL 254
R + + ++ Q +
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHM 151
Score = 34.8 bits (78), Expect = 0.005
Identities = 19/94 (20%), Positives = 32/94 (34%)
Query: 208 SLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDDNQL 267
L + D L + E Q + ++ GL LR L + + L
Sbjct: 9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68
Query: 268 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 301
R V +F + L+ L + N +L+ G
Sbjct: 69 RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 37.7 bits (86), Expect = 8e-04
Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 45/194 (23%)
Query: 109 PDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSH 168
D + K++ D + SI +++ + IK+V IQ+ ++ + L+
Sbjct: 19 SDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNG 77
Query: 169 NQLVNIPIRGFEPQEKLVELQLNHNKLSSV------------------------------ 198
N+L +I + L N K S
Sbjct: 78 NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137
Query: 199 ----------NNKTFIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQ 248
+ L L L+L N + D+ A L+ L+ L L +N IS +
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR- 194
Query: 249 ACFEGLTALRILYL 262
GL L +L L
Sbjct: 195 -ALAGLKNLDVLEL 207
Score = 30.0 bits (66), Expect = 0.30
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 107 CPPDCDCNDETLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDL 166
+ D++P+ +Q L L N I + A+ +L ++L
Sbjct: 149 ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 207
Query: 167 SHNQ 170
+Q
Sbjct: 208 F-SQ 210
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 36.8 bits (84), Expect = 0.001
Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 5/142 (3%)
Query: 130 IPITLNPS-IQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVEL 188
N + L L+ +I +++ +D S N++ + GF +L L
Sbjct: 11 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTL 68
Query: 189 QLNHNKLSSVNNKTFIGLKSLKVLNLRGNFLEDLPDRLF-APLSHLEELDLGQNRISRID 247
+N+N++ + L L L L N L +L D A L L L + +N ++
Sbjct: 69 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128
Query: 248 QACFEGLTALRIL-YLDDNQLR 268
+ + + LD +++
Sbjct: 129 HYRLYVIYKVPQVRVLDFQKVK 150
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 35.8 bits (81), Expect = 0.003
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 195 LSSVNNKTFIGLKSLKVLNLRGNF--LEDLPDRLFAPLSHLEELDLGQNRISRIDQACFE 252
+ + + + + L G +E + L + L + L L N I +I
Sbjct: 11 IRIFEERKSVVATEAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKIS--SLS 67
Query: 253 GLTALRILY 261
G+ LRIL
Sbjct: 68 GMENLRILS 76
Score = 28.9 bits (63), Expect = 0.65
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 141 LVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPIRGFEPQEKLVELQLNHN 193
L I+ +D+ + + +H+ LS N + I E L L L N
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN 80
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 32.3 bits (72), Expect = 0.044
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 203 FIGLKSLKVLNLRGNFLEDLPDRLFAPLSHLEEL 236
L +L+ L++ N + D+ A L++LE L
Sbjct: 168 LANLTTLERLDISSNKVSDISV--LAKLTNLESL 199
Score = 31.6 bits (70), Expect = 0.097
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 227 FAPLSHLEELDLGQNRISRIDQACFEGLTALRIL 260
A L+ LE LD+ N++S I LT L L
Sbjct: 168 LANLTTLERLDISSNKVSDIS--VLAKLTNLESL 199
Score = 29.2 bits (64), Expect = 0.56
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 205 GLKSLKVLNLRGNFLEDLPDRLFAPLSHLEELDLGQNRISRIDQACFEGLTALRILYLDD 264
L L + D + L + L + I ID E L L + +
Sbjct: 16 ALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSN 71
Query: 265 NQ 266
NQ
Sbjct: 72 NQ 73
Score = 25.8 bits (55), Expect = 7.4
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 153 SAIQFYSSLQHVDLSHNQLVNIPI 176
+ ++L+ +D+S N++ +I +
Sbjct: 166 KPLANLTTLERLDISSNKVSDISV 189
Score = 25.4 bits (54), Expect = 8.8
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 176 IRGFEPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVL 212
++ L L ++ NK+S + L +L+ L
Sbjct: 165 LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL 199
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 32.0 bits (71), Expect = 0.089
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 117 TLVVTCKEANLDVIPITLNPSIQRLVLKYNRIKTVDSAIQFYSSLQHVDLSHNQLVNIPI 176
TL +T K + DV L+ + + + + +QH+DLS++ + +
Sbjct: 4 TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63
Query: 177 RGF-EPQEKLVELQLNHNKLSSVNNKTFIGLKSLKVLN 213
G KL L L +LS T +L LN
Sbjct: 64 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101
>d1fepa_ f.4.3.3 (A:) Ferric enterobactin receptor FepA {Escherichia
coli [TaxId: 562]}
Length = 714
Score = 28.1 bits (60), Expect = 1.9
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 115 DETLVVTCKEANLDVIPITLNPSI-QRLVLKYNRIKTVDSAIQFYSSLQHVDLSHN---- 169
D+T+VVT E NL ++ +I + K + V I+ + S +
Sbjct: 1 DDTIVVTAAEQNLQAPGVS---TITADEIRKNPVARDVSKIIRTMPGVNLTGNSTSGQRG 57
Query: 170 QLVNIPIRGFEPQEKLV 186
I IRG P+ L+
Sbjct: 58 NNRQIDIRGMGPENTLI 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.412
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,195,292
Number of extensions: 53816
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 89
Length of query: 332
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,226,816
Effective search space: 301796736
Effective search space used: 301796736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)