BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8551
(581 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 125/283 (44%), Gaps = 36/283 (12%)
Query: 117 RRVEIF--GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV 174
R +EI +N + +I+ F GL +L L L DN+L +VPT +F YL L EL + N
Sbjct: 59 RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 175 FTTLADGAFNGLGRLSALDL-RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK 233
++ AFN + L LDL L IS+ AF GL LR L L L+ IP L+
Sbjct: 119 IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTA 176
Query: 234 LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXX 293
L RLEELE+ N ++ G F+GL+ L++L + A T
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT-------------------- 216
Query: 294 XXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNIL- 351
IE A L +L LNL N S + L + + NP C C++L
Sbjct: 217 ------IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLW 270
Query: 352 ---WLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGA 391
WL+E + T C++PA LK + + L C
Sbjct: 271 LSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTCYAG 313
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 130/335 (38%), Gaps = 84/335 (25%)
Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXX 299
L + +N ++ FK L +L+ L++ + NL R
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQL--SKNLVR------------------------K 73
Query: 300 IEEGALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLV 358
IE GA GLP+L L L +N T+ + +LR + + NPIE
Sbjct: 74 IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE------------- 120
Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 418
S + + SL DLG L IS+ AF GL LR L L L+
Sbjct: 121 ----------SIPSYAFNRVPSLRRLDLG-ELKRLEYISEAAFEGLVNLRYLNLGMCNLK 169
Query: 419 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXX 478
IP L+ L RLEELE+ N ++ G F+GL+ L++L + A T
Sbjct: 170 DIP--NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT----------- 216
Query: 479 XXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENP 537
IE +A L +L LNL N S + L + + NP
Sbjct: 217 ---------------IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261
Query: 538 IECGCNIL----WLREMLVRRNTSAVFCNSPAPLK 568
C C++L WL+E + T C++PA LK
Sbjct: 262 WHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLK 296
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 14/227 (6%)
Query: 30 NLQEANLDVIPSHSNPSIQRL---VLSTNRIKTVD----SAIPIYLSLQHVDLSHTTWLI 82
NLQE ++ VI + + ++ L LS N ++ ++ + +P +L+ D TT
Sbjct: 41 NLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT--- 97
Query: 83 IPIGGFEPQEKLVELQLNHN--KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTA 140
+P FE KL EL L +N + P + S RR+++ R+ I +A FEGL
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN 157
Query: 141 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
LR L L L+ + P+ L L EL + N + G+F GL L L L A +
Sbjct: 158 LRYLNLGMCNLKDI--PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA 215
Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
I NAF L L L L+ N L S+P + L RLE + + N +
Sbjct: 216 TIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW 262
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 125/280 (44%), Gaps = 36/280 (12%)
Query: 117 RRVEIF--GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV 174
R +EI +N + +I+ F GL +L L L DN+L +VPT +F YL L EL + N
Sbjct: 59 RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 175 FTTLADGAFNGLGRLSALDL-RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK 233
++ AFN + L LDL L IS+ AF GL LR L L L+ IP L+
Sbjct: 119 IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTA 176
Query: 234 LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXX 293
L RLEELE+ N ++ G F+GL+ L++L + A T
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT-------------------- 216
Query: 294 XXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNIL- 351
IE A L +L LNL N S + L + + NP C C++L
Sbjct: 217 ------IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLW 270
Query: 352 ---WLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGC 388
WL+E + T C++PA LK + + L C
Sbjct: 271 LSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTC 310
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 130/335 (38%), Gaps = 84/335 (25%)
Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXX 299
L + +N ++ FK L +L+ L++ + NL R
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQL--SKNLVR------------------------K 73
Query: 300 IEEGALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLV 358
IE GA GLP+L L L +N T+ + +LR + + NPIE
Sbjct: 74 IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE------------- 120
Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 418
S + + SL DLG L IS+ AF GL LR L L L+
Sbjct: 121 ----------SIPSYAFNRVPSLRRLDLG-ELKRLEYISEAAFEGLVNLRYLNLGMCNLK 169
Query: 419 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXX 478
IP L+ L RLEELE+ N ++ G F+GL+ L++L + A T
Sbjct: 170 DIP--NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT----------- 216
Query: 479 XXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENP 537
IE +A L +L LNL N S + L + + NP
Sbjct: 217 ---------------IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261
Query: 538 IECGCNIL----WLREMLVRRNTSAVFCNSPAPLK 568
C C++L WL+E + T C++PA LK
Sbjct: 262 WHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLK 296
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 14/227 (6%)
Query: 30 NLQEANLDVIPSHSNPSIQRL---VLSTNRIKTVD----SAIPIYLSLQHVDLSHTTWLI 82
NLQE ++ VI + + ++ L LS N ++ ++ + +P +L+ D TT
Sbjct: 41 NLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT--- 97
Query: 83 IPIGGFEPQEKLVELQLNHN--KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTA 140
+P FE KL EL L +N + P + S RR+++ R+ I +A FEGL
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN 157
Query: 141 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
LR L L L+ + P+ L L EL + N + G+F GL L L L A +
Sbjct: 158 LRYLNLGMCNLKDI--PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA 215
Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
I NAF L L L L+ N L S+P + L RLE + + N +
Sbjct: 216 TIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW 262
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 122/280 (43%), Gaps = 36/280 (12%)
Query: 117 RRVEIF--GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV 174
R +EI +N I I+ F GL L L L DN+L ++P +F+YL L EL + N
Sbjct: 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147
Query: 175 FTTLADGAFNGLGRLSALDL-RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK 233
++ AFN + L LDL L+ IS+ AF GLS LR L L L+ IP L+
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTP 205
Query: 234 LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXX 293
L +L+EL++ N S + G F+GL +L++L + +
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ----------------------- 242
Query: 294 XXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILW 352
IE A L +L +NL N T + L I + NP C C+ILW
Sbjct: 243 ---IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILW 299
Query: 353 L----REMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGC 388
L ++M CN+P LK + + L C
Sbjct: 300 LSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTC 339
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 110/275 (40%), Gaps = 58/275 (21%)
Query: 300 IEEGALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLV 358
IE GA GL NL L L +N T+ + +L+ + + NPIE
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE------------- 149
Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 418
S + + SL DLG L+ IS+ AF GLS LR L L L+
Sbjct: 150 ----------SIPSYAFNRIPSLRRLDLG-ELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198
Query: 419 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXX 478
IP L+ L +L+EL++ N S + G F+GL +L++L + +
Sbjct: 199 EIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-------------- 242
Query: 479 XXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENP 537
+IE +A L +L +NL N T + L I + NP
Sbjct: 243 ------------IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290
Query: 538 IECGCNILWL----REMLVRRNTSAVFCNSPAPLK 568
C C+ILWL ++M CN+P LK
Sbjct: 291 WNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLK 325
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 106/236 (44%), Gaps = 8/236 (3%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRL---VLSTNRIKTVD-SAIPIYLSLQHVD 74
P ST NL E + +I +S ++ L LS N I+T++ A +L ++
Sbjct: 59 PDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118
Query: 75 LSHTTWLIIPIGGFEPQEKLVELQLNHN--KHFPQQIVCSIISPRRVEIFGQNRISRIDQ 132
L IP G F KL EL L +N + P I S RR+++ R+S I +
Sbjct: 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178
Query: 133 ACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSAL 192
FEGL+ LR L L LR + P+ L L EL + N + + G+F GL L L
Sbjct: 179 GAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
Query: 193 DLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
+ + + I NAF L L + L N L +P + L LE + + N ++
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 467
R L L +N++Q I L LE L++ +N +E G F GL+ L LE+ + LT
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-NRLT 125
Query: 468 RVRKGAFA 475
+ GAF
Sbjct: 126 TIPNGAFV 133
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 65/168 (38%), Gaps = 11/168 (6%)
Query: 343 PIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFR 402
P C C+ + + + VR+N V IS + L + I N+F+
Sbjct: 36 PSVCSCSNQFSKVICVRKNLREV----------PDGISTNTRLLNLHENQIQIIKVNSFK 85
Query: 403 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 462
L L L L+ N +++I + L L LE+ N + + G F LS LK L +
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 463 ASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNL 510
+ + + AF I E A GL NL +LNL
Sbjct: 146 -NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 122/276 (44%), Gaps = 36/276 (13%)
Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 181
G+N I +I+ F GL +L L L DN L +P+ +F YL L EL + N ++
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY 165
Query: 182 AFNGLGRLSALDL-RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
AFN + L LDL L IS+ AF GL L+ L L ++ +P L+ L LEEL
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEEL 223
Query: 241 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXI 300
E+ N F + G F GLS LK+L + + I
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ--------------------------VSLI 257
Query: 301 EEGALVGLPNLYHLNLKENAFTSFSESMLAWP--ELRTIDIAENPIECGCNIL----WLR 354
E A GL +L LNL N +S + P L + + NP C C+IL WLR
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFT-PLRYLVELHLHHNPWNCDCDILWLAWWLR 316
Query: 355 EMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAG 390
E + +T C++P ++ + L+ + C+
Sbjct: 317 EYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSA 352
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 135/343 (39%), Gaps = 86/343 (25%)
Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXX 299
L + +N M++A F+ L +L+ L++ S +R+
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNS----IRQ---------------------- 113
Query: 300 IEEGALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLV 358
IE GA GL +L L L +N T + +LR + + NPIE
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE------------- 160
Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 418
S + + SL DLG L IS+ AF GL L+ L L ++
Sbjct: 161 ----------SIPSYAFNRVPSLMRLDLG-ELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209
Query: 419 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXX 478
+P L+ L LEELE+ N F + G F GLS LK+L + +
Sbjct: 210 DMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-------------- 253
Query: 479 XXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWP--ELRTIDIAEN 536
+IE +A GL +L LNL N +S + P L + + N
Sbjct: 254 ------------VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT-PLRYLVELHLHHN 300
Query: 537 PIECGCNIL----WLREMLVRRNTSAVFCNSPAPLKYKSLISL 575
P C C+IL WLRE + +T C++P ++ + L+ +
Sbjct: 301 PWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEV 343
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 106/227 (46%), Gaps = 12/227 (5%)
Query: 30 NLQEANLDVIPSHSNPSIQRL---VLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPI 85
NL E N+ +I + + + L L N I+ ++ A SL ++L +IP
Sbjct: 81 NLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS 140
Query: 86 GGFEPQEKLVELQLNHN--KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRI 143
G FE KL EL L +N + P + S R+++ ++ I + FEGL L+
Sbjct: 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200
Query: 144 LYLDDNQLRSVP--TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
L L ++ +P TP L L EL + N F + G+F+GL L L + + ++
Sbjct: 201 LNLGMCNIKDMPNLTP----LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256
Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
I NAF GL+ L L L N L S+P + L L EL + N ++
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 99/251 (39%), Gaps = 29/251 (11%)
Query: 211 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 270
S R L L +N +Q I L LE L++G+N +E G F GL+ L LE+ +
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-N 133
Query: 271 NLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLA 330
LT + GAF + I A +P+L L+L
Sbjct: 134 WLTVIPSGAF-EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG------------- 179
Query: 331 WPELRTID-IAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCA 389
EL+ ++ I+E E N+ +L + CN L+ L E+L +
Sbjct: 180 --ELKKLEYISEGAFEGLFNLKYL---------NLGMCNIKDMPNLTPLVGL--EELEMS 226
Query: 390 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 449
G I +F GLS L+ L + ++++ I L L EL + N S L F
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286
Query: 450 KGLSYLKRLEI 460
L YL L +
Sbjct: 287 TPLRYLVELHL 297
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 42 HSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLN 100
H S+++L + +++ ++ +A SL ++L+H +P F P LVEL L+
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298
Query: 101 HNKHFPQQIVCSII 114
HN P C I+
Sbjct: 299 HN---PWNCDCDIL 309
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 122/282 (43%), Gaps = 32/282 (11%)
Query: 115 SPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV 174
S +R+ + G NRIS + A F+ L IL+L N L + +F L +L +L + N
Sbjct: 32 SSQRIFLHG-NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNA 90
Query: 175 FTTLAD-GAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK 233
+ D F GLG L L L GL + FRGL+ L+ L L DN LQ++P
Sbjct: 91 QLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRD 150
Query: 234 LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXX 293
L L L + N + F+GL L RL + +++ RV AF D
Sbjct: 151 LGNLTHLFLHGNRIPSVPEHAFRGLHSLDRL-LLHQNHVARVHPHAFRD----------- 198
Query: 294 XXXXXXIEEGALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENPIECGCNI-- 350
L L L L N + +E ++ L+ + + +NP C C
Sbjct: 199 --------------LGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARP 244
Query: 351 LWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDL-GCAGA 391
LW R ++S V CN P L + L L+A DL GCA A
Sbjct: 245 LWAWLQKFRGSSSEVPCNLPQRLAGRDLKRLAASDLEGCAVA 286
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 93/229 (40%), Gaps = 25/229 (10%)
Query: 33 EANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLI------IPIG 86
+ L +P+ S QR+ L NRI V +A S Q WL I
Sbjct: 19 QQGLQAVPTGIPASSQRIFLHGNRISYVPAA-----SFQSCRNLTILWLHSNALAGIDAA 73
Query: 87 GFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQ--------ACFEGL 138
F L +L L+ N ++ P G +D+ F GL
Sbjct: 74 AFTGLTLLEQLDLSDNAQL------RVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGL 127
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
AL+ LYL DN L+++P +F LG L L + N ++ + AF GL L L L
Sbjct: 128 AALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNH 187
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
+ + +AFR L L +L L N L +P + L L L+ L + N +
Sbjct: 188 VARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPW 236
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 78/192 (40%), Gaps = 29/192 (15%)
Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
GL + FRGL+ L+ L L DN LQ++P L L L + N + F+G
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRG 174
Query: 452 LSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLK 511
L L RL + +++ RV AF D L L L L
Sbjct: 175 LHSLDRL-LLHQNHVARVHPHAFRD-------------------------LGRLMTLYLF 208
Query: 512 ENAFTSF-SESMLAWPELRTIDIAENPIECGCNI--LWLREMLVRRNTSAVFCNSPAPLK 568
N + +E ++ L+ + + +NP C C LW R ++S V CN P L
Sbjct: 209 ANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCNLPQRLA 268
Query: 569 YKSLISLSAEDL 580
+ L L+A DL
Sbjct: 269 GRDLKRLAASDL 280
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 51/248 (20%)
Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 273
+ + L NR+ +P L L + N + ++A F GL+ L++L+++ + L
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 274 RVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESML-AWP 332
V F GL +L+ L+L +
Sbjct: 94 VVDPTTFR-------------------------GLGHLHTLHLDRCGLQELGPGLFRGLA 128
Query: 333 ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAG 392
L+ + + +N N A+ N+ ++ L +L+ L G
Sbjct: 129 ALQYLYLQDN------------------NLQALPDNT-----FRDLGNLT--HLFLHGNR 163
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+ ++ ++AFRGL L L+L N + + L RL L + N SML A L
Sbjct: 164 IPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPL 223
Query: 453 SYLKRLEI 460
L+ L +
Sbjct: 224 RSLQYLRL 231
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 467
+ + L NR+ +P L L + N + ++A F GL+ L++L+++ + L
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 468 RVRKGAF 474
V F
Sbjct: 94 VVDPTTF 100
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N++S + F LT LR+LYL+DN+L+++P F L L L V N L G F+
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 244
L L+ L L L ++ F L+ L L L N LQS+P KLT L+EL +
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166
Query: 245 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF 280
N + G F L+ LK L++ + L RV +GAF
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDN-NQLKRVPEGAF 201
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 2/194 (1%)
Query: 73 VDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQ 132
VD S IP K ++LQ N P + ++ R+ N++ +
Sbjct: 21 VDCSSKKLTAIP-SNIPADTKKLDLQSNKLSSLPSKAF-HRLTKLRLLYLNDNKLQTLPA 78
Query: 133 ACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSAL 192
F+ L L L++ DN+L+++P F L LAELR+ N +L F+ L +L+ L
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138
Query: 193 DLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 252
L L ++ F L+ L+ L L +N+L+ +P KLT L+ L++ N +
Sbjct: 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198
Query: 253 GCFKGLSYLKRLEI 266
G F L LK L++
Sbjct: 199 GAFDSLEKLKMLQL 212
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 5/213 (2%)
Query: 53 STNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK--HFPQQIV 110
S+ ++ + S IP + +DL +P F KL L LN NK P I
Sbjct: 24 SSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81
Query: 111 CSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 170
+ + + + N++ + F+ L L L LD NQL+S+P F L L L +
Sbjct: 82 KELKNLETLWV-TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 171 GLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ 230
G N +L G F+ L L L L L + + AF L+ L++L L +N+L+ +P
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200
Query: 231 LSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
L +L+ L++ +N + G +LK+
Sbjct: 201 FDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKK 233
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 95/220 (43%), Gaps = 26/220 (11%)
Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
+ L L N+L S+P+ +F L L L + N TL G F L L L + L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
+ F L L L L N+L+S+P + LT+L L +G N L G F L+ L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 262 KRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAF 321
K L + + L RV +GAF + E + L N + E AF
Sbjct: 160 KELRLYN-NQLKRVPEGAF-----------------DKLTELKTLKLDNNQLKRVPEGAF 201
Query: 322 TSFSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVRR 360
S + L+ + + ENP +C CN I+++ + L ++
Sbjct: 202 DSLEK-------LKMLQLQENPWDCTCNGIIYMAKWLKKK 234
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 86/234 (36%), Gaps = 36/234 (15%)
Query: 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLS 405
C CN N ++V C+S S I + L L+++ AF L+
Sbjct: 12 CSCN----------NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLT 61
Query: 406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT---- 461
LR L L DN+LQ++P +L LE L + N L G F L L L +
Sbjct: 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Query: 462 -------------------GASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGL 502
G + L + KG F D + E A L
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF-DKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 503 PNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCN-ILWLREMLVRR 554
L L L N E + +L+ + + ENP +C CN I+++ + L ++
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKK 234
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 140/335 (41%), Gaps = 35/335 (10%)
Query: 43 SNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNH 101
S P ++ L L+ N + V+ A +L+ + L +IP+G F L +L ++
Sbjct: 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113
Query: 102 NKH--FPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 159
NK + + + + +E+ G N + I F GL +L L L+ L S+PT +
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEV-GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172
Query: 160 IYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL-RGAGLTNISDNAFRGLSGLRSLVL 218
+L L LR+ + D +F L RL L++ L ++ N GL+ L SL +
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSI 231
Query: 219 TDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKG 278
T L ++P + L L L + N S +E L L+ +++ G G
Sbjct: 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG---------G 282
Query: 279 AFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESML-AWPELRTI 337
A +E A GL L LN+ N T+ ES+ + L T+
Sbjct: 283 QLA-----------------VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325
Query: 338 DIAENPIECGCNILWL--REMLVRRNTSAVFCNSP 370
+ NP+ C C +LW+ R + N C +P
Sbjct: 326 ILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 97/400 (24%), Positives = 153/400 (38%), Gaps = 79/400 (19%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L +G N TL F L L+L ++ + AF L LR+L L NRL+ IP
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
+ L+ L +L+I +N +L F+ L LK LE+ G ++L + AF+
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV-GDNDLVYISHRAFS------ 149
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
GL +L L L++ TS L+ G
Sbjct: 150 -------------------GLNSLEQLTLEKCNLTSIPTEALSHLH-------------G 177
Query: 348 CNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGL 407
+L LR + + N+ +K L L ++ L ++ N GL+ L
Sbjct: 178 LIVLRLRHLNI---------NAIRDYSFKRLYRLKVLEIS-HWPYLDTMTPNCLYGLN-L 226
Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 467
SL +T L ++P + L L L + N S +E L L+ +++ G
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG----- 281
Query: 468 RVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESML-AWP 526
G A ++E A GL L LN+ N T+ ES+ +
Sbjct: 282 ----GQLA-----------------VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320
Query: 527 ELRTIDIAENPIECGCNILWL--REMLVRRNTSAVFCNSP 564
L T+ + NP+ C C +LW+ R + N C +P
Sbjct: 321 NLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 132/343 (38%), Gaps = 27/343 (7%)
Query: 75 LSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQAC 134
L H + G + +L++L N K Q S +E+ +N +S ++
Sbjct: 17 LCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELEL-NENIVSAVEPGA 75
Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
F L LR L L N+L+ +P F L L +L + N L D F L L +L++
Sbjct: 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135
Query: 195 RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 254
L IS AF GL+ L L L L SIPT+ LS L L L + + +
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195
Query: 255 FKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHL 314
FK L LK LEI+ L + + A+ L L L
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYG--LNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253
Query: 315 NLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLK 374
NL N ++ SML +L L+E+ + AV P
Sbjct: 254 NLSYNPISTIEGSMLH------------------ELLRLQEIQLVGGQLAVV----EPYA 291
Query: 375 YKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRL 417
++ L L L +G LT + ++ F + L +L+L N L
Sbjct: 292 FRGLNYLRV--LNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI------- 460
R L L NR++++ + + LEELE+ +N S +E G F L L+ L +
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 461 ------TGASNLTRV 469
TG SNLT++
Sbjct: 95 IPLGVFTGLSNLTKL 109
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 125/532 (23%), Positives = 205/532 (38%), Gaps = 85/532 (15%)
Query: 69 SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNH---NKHFPQQIVCSIISPRRVE--IFG 123
SL+ +DLS G F+ KL L LN+ N H +++ C +S ++
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKL-CWELSNTSIQNLSLA 230
Query: 124 QNRISRIDQACFEGL--TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 181
N++ ++ F GL T L L L N L V SF YL L L + N L+
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 182 AFNGLGRLSALDLRGA---------GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 232
+F GL L L L+ A NI D +F+ L L L + DN + S + +
Sbjct: 291 SFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFT 350
Query: 233 KLTRLEELEIGQNGFSM--LEAGCFKGLSYLKRLEITGASN-LTRVRKGAFADXXXXXXX 289
L L+ L + + S+ L F L++ L + N ++++ G F+
Sbjct: 351 GLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRIL 410
Query: 290 XXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN 349
+ GL N++ + L N + S S A
Sbjct: 411 DLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFAL------------------ 452
Query: 350 ILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRS 409
+ L+ +++RR SP+P ++ L +L+ DL + + NI+++ GL L
Sbjct: 453 VPSLQRLMLRRVALKNVDISPSP--FRPLRNLTILDL--SNNNIANINEDLLEGLENLEI 508
Query: 410 LVLTDNRLQSI--------PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
L N L + P L L+ L L + NG + G FK L LK + +
Sbjct: 509 LDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLG 568
Query: 462 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSES 521
+ L ++ F D +L LNL++N TS +
Sbjct: 569 LNN-LNKLEPFIFDDQT-------------------------SLRSLNLQKNLITSVEKD 602
Query: 522 MLAWP--ELRTIDIAENPIECGC-NILWLREMLVRRNT------SAVFCNSP 564
+ P L ++D+ NP +C C +I W + + +T + CN+P
Sbjct: 603 VFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTP 654
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 100/453 (22%), Positives = 165/453 (36%), Gaps = 58/453 (12%)
Query: 141 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
+ +L L NQLR +P +F LA L G N + L L L L+L+ L+
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC------ 254
ISD F + L L L N + I + L +L++ NG S + G
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLEN 146
Query: 255 --------------------FKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXX 294
F G S L++L+++ ++ L G F
Sbjct: 147 LQELLLAKNKILALRSEELEFLGNSSLRKLDLS-SNPLKEFSPGCFQTIGKLFALLLNNA 205
Query: 295 XXXXXIEEGALVGLPN--LYHLNLKENAFTSFSESM---LAWPELRTIDIAENPIECGCN 349
+ E L N + +L+L N + SES L W L +D++ N + N
Sbjct: 206 QLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGN 265
Query: 350 ----------ILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDN 399
L L ++R + F + L+Y SL + + A NI D
Sbjct: 266 GSFSYLPSLRYLSLEYNNIQRLSPRSFY-GLSNLRYLSLKRAFTKQ-SVSLASHPNIDDF 323
Query: 400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM--LEAGCFKGLSYLKR 457
+F+ L L L + DN + S + + L L+ L + + S+ L F L++
Sbjct: 324 SFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPL 383
Query: 458 LEITGASN-LTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFT 516
L + N ++++ G F+ + GL N++ + L N +
Sbjct: 384 LTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYL 443
Query: 517 SFSES-----------MLAWPELRTIDIAENPI 538
S S ML L+ +DI+ +P
Sbjct: 444 QLSTSSFALVPSLQRLMLRRVALKNVDISPSPF 476
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
Query: 118 RVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 177
R G N++ I + + LT L L L NQL+S+P F L L EL + N +
Sbjct: 66 RYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 178 LADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 237
L DG F+ L L+ L+L L ++ F L+ L L L+ N+LQS+P KLT+L
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Query: 238 EELEIGQNGFSMLEAGCFKGLSYLKRL 264
++L + QN + G F L+ L+ +
Sbjct: 184 KDLRLYQNQLKSVPDGVFDRLTSLQYI 210
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 180
I N++ + F+ LT L+ L L +NQL+S+P F L L L + N +L
Sbjct: 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150
Query: 181 GAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
G F+ L L+ LDL L ++ + F L+ L+ L L N+L+S+P +LT L+ +
Sbjct: 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
Query: 241 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
+ N + + C G+ YL I S + R G+ A
Sbjct: 211 WLHDNPW---DCTC-PGIRYLSEW-INKHSGVVRNSAGSVA 246
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 14/194 (7%)
Query: 98 QLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQAC-----------FEGLTALRILYL 146
Q+ + F + I ++ + QN ++ IDQ + L +R L L
Sbjct: 11 QIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLAL 70
Query: 147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206
N+L + + L L L + N +L +G F+ L L L L L ++ D
Sbjct: 71 GGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
F L+ L L L N+LQS+P KLT L EL++ N L G F L+ LK L +
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Query: 267 TGASNLTRVRKGAF 280
+ L V G F
Sbjct: 189 Y-QNQLKSVPDGVF 201
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 78/180 (43%), Gaps = 8/180 (4%)
Query: 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
L G L +IS A + L+ L L+LT N+LQS+P KLT L+EL + +N L
Sbjct: 68 LALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNL 505
G F L+ L L + + L + KG F D + E L L
Sbjct: 126 DGVFDKLTNLTYLNL-AHNQLQSLPKGVF-DKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Query: 506 YHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGC-NILWLREMLVRRNTSAVFCNS 563
L L +N S + + L+ I + +NP +C C I +L E + + S V NS
Sbjct: 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH--SGVVRNS 241
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 24/177 (13%)
Query: 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKH 104
P+++ L L N++ + SA+ +L ++ L+ +P G F+ L EL
Sbjct: 63 PNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL------- 114
Query: 105 FPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM 164
+ +N++ + F+ LT L L L NQL+S+P F L
Sbjct: 115 ----------------VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158
Query: 165 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN 221
L EL + N +L +G F+ L +L L L L ++ D F L+ L+ + L DN
Sbjct: 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 106 PQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD--DNQLRSVPTPSFIYLG 163
P + CS + VE + Q R S G+ A + YLD N L+S+P F L
Sbjct: 2 PSRCSCSGTT---VECYSQGRTSVP-----TGIPA-QTTYLDLETNSLKSLPNGVFDELT 52
Query: 164 MLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRL 223
L +L +G N +L +G FN L L+ L+L L ++ + F L+ L+ L L N+L
Sbjct: 53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL 112
Query: 224 QSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 264
QS+P KLT+L++L + QN + G F L+ L+ +
Sbjct: 113 QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 5/157 (3%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N + + F+ LT+L LYL N+L+S+P F L L L + N +L +G F+
Sbjct: 38 NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD 97
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 244
L +L L L L ++ D F L+ L+ L L N+L+S+P +LT L+ + +
Sbjct: 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157
Query: 245 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
N + + C G+ YL I S + R G+ A
Sbjct: 158 NPW---DCTC-PGIRYLSEW-INKHSGVVRNSAGSVA 189
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 87 GFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYL 146
G Q ++L+ N K P + + S ++ + G N++ + F LT+L L L
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYL-GGNKLQSLPNGVFNKLTSLTYLNL 83
Query: 147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206
NQL+S+P F L L EL + N +L DG F+ L +L L L L ++ D
Sbjct: 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143
Query: 207 FRGLSGLRSLVLTDN 221
F L+ L+ + L DN
Sbjct: 144 FDRLTSLQYIWLHDN 158
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 84/208 (40%), Gaps = 38/208 (18%)
Query: 187 GRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG 246
+ + LDL L ++ + F L+ L L L N+LQS+P +KLT L L + N
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 247 FSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALV 306
L G F L+ LK L + N +++ + +G
Sbjct: 88 LQSLPNGVFDKLTQLKELAL----NTNQLQS----------------------LPDGVFD 121
Query: 307 GLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGC-NILWLREMLVRRNTSA 364
L L L L +N S + + L+ I + +NP +C C I +L E + + S
Sbjct: 122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH--SG 179
Query: 365 VFCNSPAPLKYKSLISLSAEDLGCAGAG 392
V NS S++ + C+G+G
Sbjct: 180 VVRNSAG--------SVAPDSAKCSGSG 199
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 375 YKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 434
+ L SL+ LG G L ++ + F L+ L L L+ N+LQS+P KLT+L+EL
Sbjct: 48 FDELTSLTQLYLG--GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105
Query: 435 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF 474
+ N L G F L+ LK L + + L V G F
Sbjct: 106 ALNTNQLQSLPDGVFDKLTQLKDLRLY-QNQLKSVPDGVF 144
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 28/165 (16%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
L ++ + F L+ L L L N+LQS+P +KLT L L + N L G F L
Sbjct: 40 LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99
Query: 453 SYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKE 512
+ LK L + + L + G F L L L L +
Sbjct: 100 TQLKELALN-TNQLQSLPDGVFDK-------------------------LTQLKDLRLYQ 133
Query: 513 NAFTSFSESMLA-WPELRTIDIAENPIECGC-NILWLREMLVRRN 555
N S + + L+ I + +NP +C C I +L E + + +
Sbjct: 134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS 178
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 104/234 (44%), Gaps = 8/234 (3%)
Query: 17 YEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSA-IPIYLSLQHVDL 75
Y + +T P LQ + IP+ S QR+ L NRI V +A +L + L
Sbjct: 9 YNEPKVTTSCPQQGLQAVPVG-IPAAS----QRIFLHGNRISHVPAASFRACRNLTILWL 63
Query: 76 SHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNR--ISRIDQA 133
I F L +L L+ N + R+ +R + +
Sbjct: 64 HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123
Query: 134 CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALD 193
F GL AL+ LYL DN L+++P +F LG L L + N +++ + AF GL L L
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183
Query: 194 LRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
L + ++ +AFR L L +L L N L ++PT+ L+ L L+ L + N +
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 86/211 (40%), Gaps = 31/211 (14%)
Query: 83 IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF--GQNRISRIDQACFEGLTA 140
+P+G + + L N H P S + R + I N ++RID A F GL
Sbjct: 26 VPVG-IPAASQRIFLHGNRISHVP---AASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 141 LRILYLDDN-QLRSVPTPSFIYLGMLAEL---RVGL---------------------NVF 175
L L L DN QLRSV +F LG L L R GL N
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT 235
L D F LG L+ L L G ++++ + AFRGL L L+L NR+ + L
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
RL L + N S L L L+ L +
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRL 232
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 78/192 (40%), Gaps = 29/192 (15%)
Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
GL + FRGL+ L+ L L DN LQ++P L L L + N S + F+G
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175
Query: 452 LSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLK 511
L L RL + + + V AF D L L L L
Sbjct: 176 LHSLDRL-LLHQNRVAHVHPHAFRD-------------------------LGRLMTLYLF 209
Query: 512 ENAFTSF-SESMLAWPELRTIDIAENPIECGCNI--LWLREMLVRRNTSAVFCNSPAPLK 568
N ++ +E++ L+ + + +NP C C LW R ++S V C+ P L
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA 269
Query: 569 YKSLISLSAEDL 580
+ L L+A DL
Sbjct: 270 GRDLKRLAANDL 281
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/245 (19%), Positives = 83/245 (33%), Gaps = 49/245 (20%)
Query: 216 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV 275
+ L NR+ +P L L + N + ++A F GL+ L++L+++ + L V
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 276 RKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELR 335
F + G GL L +L L++NA + +
Sbjct: 97 DPATF-HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-------- 147
Query: 336 TIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTN 395
++ L +L+ L G +++
Sbjct: 148 --------------------------------------TFRDLGNLT--HLFLHGNRISS 167
Query: 396 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 455
+ + AFRGL L L+L NR+ + L RL L + N S L L L
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227
Query: 456 KRLEI 460
+ L +
Sbjct: 228 QYLRL 232
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 410 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV 469
+ L NR+ +P L L + N + ++A F GL+ L++L+++ + L V
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 470 RKGAF 474
F
Sbjct: 97 DPATF 101
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 104/234 (44%), Gaps = 8/234 (3%)
Query: 17 YEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSA-IPIYLSLQHVDL 75
Y + +T P LQ + IP+ S QR+ L NRI V +A +L + L
Sbjct: 8 YNEPKVTTSCPQQGLQAVPVG-IPAAS----QRIFLHGNRISHVPAASFRACRNLTILWL 62
Query: 76 SHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNR--ISRIDQA 133
I F L +L L+ N + R+ +R + +
Sbjct: 63 HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 122
Query: 134 CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALD 193
F GL AL+ LYL DN L+++P +F LG L L + N +++ + AF GL L L
Sbjct: 123 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 182
Query: 194 LRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
L + ++ +AFR L L +L L N L ++PT+ L+ L L+ L + N +
Sbjct: 183 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 236
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 86/211 (40%), Gaps = 31/211 (14%)
Query: 83 IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF--GQNRISRIDQACFEGLTA 140
+P+G + + L N H P S + R + I N ++RID A F GL
Sbjct: 25 VPVG-IPAASQRIFLHGNRISHVP---AASFRACRNLTILWLHSNVLARIDAAAFTGLAL 80
Query: 141 LRILYLDDN-QLRSVPTPSFIYLGMLAEL---RVGL---------------------NVF 175
L L L DN QLRSV +F LG L L R GL N
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT 235
L D F LG L+ L L G ++++ + AFRGL L L+L NR+ + L
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
RL L + N S L L L+ L +
Sbjct: 201 RLMTLYLFANNLSALPTEALAPLRALQYLRL 231
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 78/192 (40%), Gaps = 29/192 (15%)
Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
GL + FRGL+ L+ L L DN LQ++P L L L + N S + F+G
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 174
Query: 452 LSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLK 511
L L RL + + + V AF D L L L L
Sbjct: 175 LHSLDRL-LLHQNRVAHVHPHAFRD-------------------------LGRLMTLYLF 208
Query: 512 ENAFTSF-SESMLAWPELRTIDIAENPIECGCNI--LWLREMLVRRNTSAVFCNSPAPLK 568
N ++ +E++ L+ + + +NP C C LW R ++S V C+ P L
Sbjct: 209 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA 268
Query: 569 YKSLISLSAEDL 580
+ L L+A DL
Sbjct: 269 GRDLKRLAANDL 280
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/245 (19%), Positives = 83/245 (33%), Gaps = 49/245 (20%)
Query: 216 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV 275
+ L NR+ +P L L + N + ++A F GL+ L++L+++ + L V
Sbjct: 36 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 95
Query: 276 RKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELR 335
F + G GL L +L L++NA + +
Sbjct: 96 DPATF-HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-------- 146
Query: 336 TIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTN 395
++ L +L+ L G +++
Sbjct: 147 --------------------------------------TFRDLGNLT--HLFLHGNRISS 166
Query: 396 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 455
+ + AFRGL L L+L NR+ + L RL L + N S L L L
Sbjct: 167 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 226
Query: 456 KRLEI 460
+ L +
Sbjct: 227 QYLRL 231
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 410 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV 469
+ L NR+ +P L L + N + ++A F GL+ L++L+++ + L V
Sbjct: 36 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 95
Query: 470 RKGAF 474
F
Sbjct: 96 DPATF 100
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
Query: 118 RVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 177
R G N++ I + + LT L L L NQL+S+P F L L EL + N +
Sbjct: 66 RYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 178 LADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 237
L DG F+ L L+ L L L ++ F L+ L L L +N+LQS+P KLT+L
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQL 183
Query: 238 EELEIGQNGFSMLEAGCFKGLSYLKRL 264
++L + N + G F L+ L +
Sbjct: 184 KQLSLNDNQLKSVPDGVFDRLTSLTHI 210
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 180
I N++ + F+ LT L+ L L +NQL+S+P F L L L + N +L
Sbjct: 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPK 150
Query: 181 GAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
G F+ L L+ LDL L ++ + F L+ L+ L L DN+L+S+P +LT L +
Sbjct: 151 GVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210
Query: 241 EIGQNGFSMLEAGCFKGLSYLKR 263
+ N + + C + YL R
Sbjct: 211 WLLNNPW---DCAC-SDILYLSR 229
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 82/194 (42%), Gaps = 14/194 (7%)
Query: 98 QLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQAC-----------FEGLTALRILYL 146
Q+ + F + I ++ + QN ++ IDQ + L +R L L
Sbjct: 11 QIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLAL 70
Query: 147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206
N+L + + L L L + N +L +G F+ L L L L L ++ D
Sbjct: 71 GGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
F L+ L L L N+LQS+P KLT L L++ N L G F L+ LK+L +
Sbjct: 129 FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
Query: 267 TGASNLTRVRKGAF 280
+ L V G F
Sbjct: 189 ND-NQLKSVPDGVF 201
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 74/171 (43%), Gaps = 6/171 (3%)
Query: 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
L G L +IS A + L+ L L+LT N+LQS+P KLT L+EL + +N L
Sbjct: 68 LALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNL 505
G F L+ L L + + L + KG F D + E L L
Sbjct: 126 DGVFDKLTNLTYLYLY-HNQLQSLPKGVF-DKLTNLTRLDLDNNQLQSLPEGVFDKLTQL 183
Query: 506 YHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGC-NILWLREMLVRR 554
L+L +N S + + L I + NP +C C +IL+L + +
Sbjct: 184 KQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWISQH 234
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 24/177 (13%)
Query: 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKH 104
P+++ L L N++ + SA+ +L ++ L+ +P G F+ L EL
Sbjct: 63 PNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL------- 114
Query: 105 FPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM 164
+ +N++ + F+ LT L LYL NQL+S+P F L
Sbjct: 115 ----------------VLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTN 158
Query: 165 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN 221
L L + N +L +G F+ L +L L L L ++ D F L+ L + L +N
Sbjct: 159 LTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 107/461 (23%), Positives = 185/461 (40%), Gaps = 75/461 (16%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSV-PTPSFIYLGMLAELRVGLNVFTTLADGAF 183
N I+ +++ F L L+ L ++ V +F L L L++ N F L GAF
Sbjct: 40 NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99
Query: 184 NGLGRLSALDLRGAGLTN--ISDNAFRGLSGLRSLVLTDNRLQSI-PTKQLSKLTRLEEL 240
NGL L L L L +S N F+ L+ L LVL DN ++ I P + R L
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159
Query: 241 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXI 300
++ F+ +++ C + L + T L R+ D
Sbjct: 160 DLT---FNKVKSICEEDLLNFQGKHFT----LLRLSSITLQDM----------------- 195
Query: 301 EEGALVGLPNLYHLNLKE--NAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLV 358
N Y L ++ N F + S + T+D++ N +E +
Sbjct: 196 ---------NEYWLGWEKCGNPFKNTS--------ITTLDLSGNG---------FKESMA 229
Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDN---AFRGL--SGLRSLVLT 413
+R F ++ A K +SLI ++ ++G + G TN D F+GL SG+++ L+
Sbjct: 230 KR-----FFDAIAGTKIQSLILSNSYNMG-SSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283
Query: 414 DNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGA 473
+++ ++ S T LE+L + QN + ++ F GL++L +L + + N
Sbjct: 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL--SQNFLGSIDSR 341
Query: 474 FADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTID 532
+ + + + +GLPNL L L N S + + L+ I
Sbjct: 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401
Query: 533 IAENPIECGCNIL-----WLREMLVRRNTSAVFCNSPAPLK 568
+ NP +C C + WL + + SA S P++
Sbjct: 402 LHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVR 442
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%)
Query: 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
+++I + ++ F T L L L N++ + +F L L +L + N ++ F
Sbjct: 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343
Query: 184 NGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
L +L LDL + + D +F GL L+ L L N+L+S+P +LT L+++ +
Sbjct: 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403
Query: 244 QN 245
N
Sbjct: 404 TN 405
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%)
Query: 127 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 186
++ + A F GLT L L LD NQL+++ F L L L + N +L G F+ L
Sbjct: 47 LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL 106
Query: 187 GRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG 246
+L L L G L ++ F L+ L+ L L N+LQSIP KLT L+ L + N
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 247 FSMLEAGCFKGLSYLKRLEITG 268
+ G F L L+ + + G
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFG 188
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N++ + F+ LT L L L +NQL S+P F +L L +L +G N +L G F+
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 244
L +L L L L +I AF L+ L++L L+ N+LQS+P +L +L+ + +
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
Query: 245 NGF 247
N F
Sbjct: 189 NQF 191
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 79/197 (40%), Gaps = 5/197 (2%)
Query: 365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ 424
V C + S I E L GL +SD FRGL+ L L L N+LQ++
Sbjct: 19 VDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 425 LSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXX 484
LT L L + N + L G F L+ L +L + G + L + G F D
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL-GGNQLKSLPSGVF-DRLTKLKEL 136
Query: 485 XXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECG-C 542
I A L NL L+L N S +L+TI + N +C C
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196
Query: 543 NILWLREMLVRRNTSAV 559
L+L + +R N++ V
Sbjct: 197 ETLYLSQW-IRENSNKV 212
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
+ Q +LD +PS ++L L + + T+ D+ L ++L + + G F
Sbjct: 20 DCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF 79
Query: 89 EPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYL 146
+ +L L L +N+ P + + ++ G N++ + F+ LT L+ L L
Sbjct: 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKL-YLGGNQLKSLPSGVFDRLTKLKELRL 138
Query: 147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 196
+ NQL+S+P +F L L L + N ++ GAF+ LG+L + L G
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%)
Query: 127 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 186
++ + A F GLT L L LD NQL+++ F L L L + N +L G F+ L
Sbjct: 47 LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL 106
Query: 187 GRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG 246
+L L L G L ++ F L+ L+ L L N+LQSIP KLT L+ L + N
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 247 FSMLEAGCFKGLSYLKRLEITG 268
+ G F L L+ + + G
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFG 188
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N++ + F+ LT L L L +NQL S+P F +L L +L +G N +L G F+
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 244
L +L L L L +I AF L+ L++L L+ N+LQS+P +L +L+ + +
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
Query: 245 NGF 247
N F
Sbjct: 189 NQF 191
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 80/197 (40%), Gaps = 5/197 (2%)
Query: 365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ 424
V C + S I E L GL +SD FRGL+ L L L N+LQ++
Sbjct: 19 VDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 425 LSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXX 484
LT L L + N + L G F L+ L +L + G + L + G F D
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL-GGNQLKSLPSGVF-DRLTKLKEL 136
Query: 485 XXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECG-C 542
I A L NL L+L N S +L+TI + N +C C
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196
Query: 543 NILWLREMLVRRNTSAV 559
IL+L + +R N++ V
Sbjct: 197 EILYLSQW-IRENSNKV 212
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
+ Q +LD +PS ++L L + + T+ D+ L ++L + + G F
Sbjct: 20 DCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF 79
Query: 89 EPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYL 146
+ +L L L +N+ P + + ++ G N++ + F+ LT L+ L L
Sbjct: 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKL-YLGGNQLKSLPSGVFDRLTKLKELRL 138
Query: 147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 196
+ NQL+S+P +F L L L + N ++ GAF+ LG+L + L G
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 9/164 (5%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 180
I N+IS+I F L L LYL NQL+ +P L ELRV N T +
Sbjct: 82 ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK---MPKTLQELRVHENEITKVRK 138
Query: 181 GAFNGLGRLSALDLRGAGL--TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 238
FNGL ++ ++L L + I + AF+G+ L + + D + +IP LT
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT--- 195
Query: 239 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD 282
EL + N + ++A KGL+ L +L ++ S ++ V G+ A+
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLAN 238
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
LDL+ +T I D F+ L L +L+L +N++ I + L +LE L + +N L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXX-XXXXXXXXIEEGALVGLPN 310
K L L+ E + +T+VRK F IE GA G+
Sbjct: 117 EKMPKTLQELRVHE----NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 311 LYHLNLKENAFTSFSESM 328
L ++ + + T+ + +
Sbjct: 173 LSYIRIADTNITTIPQGL 190
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 77/194 (39%), Gaps = 29/194 (14%)
Query: 173 NVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 232
N T + DG F L L L L ++ IS AF L L L L+ N+L+ +P K
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 121
Query: 233 KLT--RLEELEIGQ------NGF---------------SMLEAGCFKGLSYLKRLEITGA 269
L R+ E EI + NG S +E G F+G+ L + I
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD- 180
Query: 270 SNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESML 329
+N+T + +G ++ +L GL NL L L N+ ++ L
Sbjct: 181 TNITTIPQG----LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 330 A-WPELRTIDIAEN 342
A P LR + + N
Sbjct: 237 ANTPHLRELHLNNN 250
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 58/270 (21%)
Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
FR LR + +D L+ +P K L T L L++ N + ++ G FK L L L I
Sbjct: 27 FRCQCHLRVVQCSDLGLEKVP-KDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTL-I 82
Query: 267 TGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSE 326
+ ++++ GAFA LV L LY L +N E
Sbjct: 83 LINNKISKISPGAFA----------------------PLVKLERLY---LSKNQLKELPE 117
Query: 327 SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDL 386
M L+ + + EN I VR++ + L + +L
Sbjct: 118 KMPKT--LQELRVHENEI-----------TKVRKSV------------FNGLNQMIVVEL 152
Query: 387 GCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 446
G + I + AF+G+ L + + D + +IP LT EL + N + ++A
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDA 209
Query: 447 GCFKGLSYLKRLEITGASNLTRVRKGAFAD 476
KGL+ L +L ++ S ++ V G+ A+
Sbjct: 210 ASLKGLNNLAKLGLSFNS-ISAVDNGSLAN 238
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 31 LQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPIGGFE 89
+ + N+ IP PS+ L L N+I VD+A L +L + LS + + G
Sbjct: 178 IADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237
Query: 90 PQEKLVELQLNHNK 103
L EL LN+NK
Sbjct: 238 NTPHLRELHLNNNK 251
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 9/164 (5%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 180
I N+IS+I F L L LYL NQL+ +P L ELRV N T +
Sbjct: 82 ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK---MPKTLQELRVHENEITKVRK 138
Query: 181 GAFNGLGRLSALDLRGAGL--TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 238
FNGL ++ ++L L + I + AF+G+ L + + D + +IP LT
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT--- 195
Query: 239 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD 282
EL + N + ++A KGL+ L +L ++ S ++ V G+ A+
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLAN 238
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
LDL+ +T I D F+ L L +L+L +N++ I + L +LE L + +N L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXX-XXXXXXXXIEEGALVGLPN 310
K L L+ E + +T+VRK F IE GA G+
Sbjct: 117 EKMPKTLQELRVHE----NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 311 LYHLNLKENAFTSFSESM 328
L ++ + + T+ + +
Sbjct: 173 LSYIRIADTNITTIPQGL 190
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 77/194 (39%), Gaps = 29/194 (14%)
Query: 173 NVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 232
N T + DG F L L L L ++ IS AF L L L L+ N+L+ +P K
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 121
Query: 233 KLT--RLEELEIGQ------NGF---------------SMLEAGCFKGLSYLKRLEITGA 269
L R+ E EI + NG S +E G F+G+ L + I
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD- 180
Query: 270 SNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESML 329
+N+T + +G ++ +L GL NL L L N+ ++ L
Sbjct: 181 TNITTIPQG----LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 330 A-WPELRTIDIAEN 342
A P LR + + N
Sbjct: 237 ANTPHLRELHLNNN 250
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 58/270 (21%)
Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
FR LR + +D L+ +P K L T L L++ N + ++ G FK L L L I
Sbjct: 27 FRCQCHLRVVQCSDLGLEKVP-KDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTL-I 82
Query: 267 TGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSE 326
+ ++++ GAFA LV L LY L +N E
Sbjct: 83 LINNKISKISPGAFA----------------------PLVKLERLY---LSKNQLKELPE 117
Query: 327 SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDL 386
M L+ + + EN I VR++ + L + +L
Sbjct: 118 KMPKT--LQELRVHENEI-----------TKVRKSV------------FNGLNQMIVVEL 152
Query: 387 GCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 446
G + I + AF+G+ L + + D + +IP LT EL + N + ++A
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDA 209
Query: 447 GCFKGLSYLKRLEITGASNLTRVRKGAFAD 476
KGL+ L +L ++ S ++ V G+ A+
Sbjct: 210 ASLKGLNNLAKLGLSFNS-ISAVDNGSLAN 238
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 31 LQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPIGGFE 89
+ + N+ IP PS+ L L N+I VD+A L +L + LS + + G
Sbjct: 178 IADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237
Query: 90 PQEKLVELQLNHNK 103
L EL LN+NK
Sbjct: 238 NTPHLRELHLNNNK 251
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 92/229 (40%), Gaps = 52/229 (22%)
Query: 166 AELRVGLNVFTTL-ADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 224
AELR+ N FT L A G F L +L ++ +T+I + AF G SG+ ++LT NRL+
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 225 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXX 284
++ K L L+ L + N + + F GLS ++ L + + +T V GAF
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAF---- 149
Query: 285 XXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
+ H L T+++ NP
Sbjct: 150 -------------------------DTLH-------------------SLSTLNLLANPF 165
Query: 345 ECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGCAGA 391
C C + WL E L ++ T C P LK + ++ +D C A
Sbjct: 166 NCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDA 214
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 51/190 (26%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+T+I + AF G SG+ ++LT NRL+++ K L L+ L + N + + F GL
Sbjct: 69 ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL 128
Query: 453 SYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKE 512
S ++ L + + +T V GAF D L
Sbjct: 129 SSVRLLSLYD-NQITTVAPGAF----------------------DTL------------- 152
Query: 513 NAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYK 570
L T+++ NP C C + WL E L ++ T C P LK
Sbjct: 153 -------------HSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEI 199
Query: 571 SLISLSAEDL 580
+ ++ +D
Sbjct: 200 PIQDVAIQDF 209
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%)
Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 181
F N+I+ I++ FEG + + + L N+L +V F L L L + N T + +
Sbjct: 64 FSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND 123
Query: 182 AFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN 221
+F GL + L L +T ++ AF L L +L L N
Sbjct: 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 144 LYLDDNQLRSV-PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNI 202
L L++N+ + T F L L ++ N T + +GAF G ++ + L L N+
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLK 262
F+GL L++L+L NR+ + L+ + L + N + + G F L L
Sbjct: 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156
Query: 263 RLEI 266
L +
Sbjct: 157 TLNL 160
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 5/161 (3%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSL---QHVDL 75
P + + + L+ IP H L L+ N TV A I+ L + ++
Sbjct: 6 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEF-TVLEATGIFKKLPQLRKINF 64
Query: 76 SHTTWLIIPIGGFEPQEKLVELQLNHNK-HFPQQIVCSIISPRRVEIFGQNRISRIDQAC 134
S+ I G FE + E+ L N+ Q + + + + NRI+ +
Sbjct: 65 SNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS 124
Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVF 175
F GL+++R+L L DNQ+ +V +F L L+ L + N F
Sbjct: 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
T +ILYL DNQ+ + F L L EL +G N L G F+ L +L+ LDL
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
LT + F L L+ L + N+L +P + + +LT L L + QN + G F L
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRL 158
Query: 259 SYLKRLEITG 268
S L + G
Sbjct: 159 SSLTHAYLFG 168
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 89/224 (39%), Gaps = 45/224 (20%)
Query: 340 AENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDN 399
A P +C C+ + V C S + I +A+ L +T +
Sbjct: 11 AACPSQCSCS------------GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPG 58
Query: 400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 459
F L L+ L L N+L ++P LT+L L++G N ++L + F L +LK L
Sbjct: 59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118
Query: 460 ITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFS 519
+ + LT + +G IE L +L HL L +N S
Sbjct: 119 MC-CNKLTELPRG---------------------IER-----LTHLTHLALDQNQLKSIP 151
Query: 520 ESMLAWPELRTIDIAE---NPIECGC-NILWLREMLVRRNTSAV 559
A+ L ++ A NP +C C +I++LR + + A+
Sbjct: 152 HG--AFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAM 193
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 181
G N++ + F+ LT L +L L NQL +P+ F L L EL + N T L G
Sbjct: 71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG 130
Query: 182 AFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN 221
L L+ L L L +I AF LS L L N
Sbjct: 131 -IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 152/361 (42%), Gaps = 68/361 (18%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSV-PTPSFIYLGMLAELRVGLNVFTTLADGAF 183
N I+ +++ F L L+ L ++ V +F L L L++ N F L GAF
Sbjct: 40 NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99
Query: 184 NGLGRLSALDLRGAGLTN--ISDNAFRGLSGLRSLVLTDNRLQSI-PTKQLSKLTRLEEL 240
NGL L L L L +S N F+ L+ L LVL DN ++ I P + R L
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159
Query: 241 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXI 300
++ F+ +++ C + L + T L R+ D
Sbjct: 160 DLT---FNKVKSICEEDLLNFQGKHFT----LLRLSSITLQDM----------------- 195
Query: 301 EEGALVGLPNLYHLNLKE--NAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLV 358
N Y L ++ N F + S + T+D++ N +E +
Sbjct: 196 ---------NEYWLGWEKCGNPFKNTS--------ITTLDLSGNG---------FKESMA 229
Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDN---AFRGL--SGLRSLVLT 413
+R F ++ A K +SLI ++ ++G + G TN D F+GL SG+++ L+
Sbjct: 230 KR-----FFDAIAGTKIQSLILSNSYNMG-SSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283
Query: 414 DNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGA 473
+++ ++ S T LE+L + QN + ++ F GL++LK L + + L V G
Sbjct: 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELAL-DTNQLKSVPDGI 342
Query: 474 F 474
F
Sbjct: 343 F 343
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 123 GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 173
QN I++ID F GLT L+ L LD NQL+SVP F L L ++ + N
Sbjct: 307 AQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 178 LADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 237
L F+ L L L + I DNAF GL+ L+ L L N+L+S+P +LT L
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSL 349
Query: 238 EELEIGQN 245
+++ + N
Sbjct: 350 QKIWLHTN 357
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 384 EDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439
E L A + I DNAF GL+ L+ L L N+L+S+P +LT L+++ + N
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 8/201 (3%)
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
+D RG GLT I N ++ +R L N ++ IP S +L +++ N S L
Sbjct: 16 VDCRGKGLTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNL 311
F+GL L L + G + +T + K F + + A L NL
Sbjct: 73 PDAFQGLRSLNSLVLYG-NKITELPKSLF-EGLFSLQLLLLNANKINXLRVDAFQDLHNL 130
Query: 312 YHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCN 368
L+L +N + ++ + ++T+ +A+NP C C++ WL + L TS C
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCT 190
Query: 369 SPAPLKYKSLISLSAEDLGCA 389
SP L K + + ++ C+
Sbjct: 191 SPRRLANKRIGQIKSKKFRCS 211
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 8/198 (4%)
Query: 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
+ C G GLT I N ++ +R L N ++ IP S +L +++ N S L
Sbjct: 16 VDCRGKGLTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNL 505
F+GL L L + G + +T + K F + + DA L NL
Sbjct: 73 PDAFQGLRSLNSLVLYG-NKITELPKSLF-EGLFSLQLLLLNANKINXLRVDAFQDLHNL 130
Query: 506 YHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCN 562
L+L +N + ++ + ++T+ +A+NP C C++ WL + L TS C
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCT 190
Query: 563 SPAPLKYKSLISLSAEDL 580
SP L K + + ++
Sbjct: 191 SPRRLANKRIGQIKSKKF 208
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 55/124 (44%)
Query: 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
QN I I F LR + L +NQ+ + +F L L L + N T L F
Sbjct: 41 QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100
Query: 184 NGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
GL L L L + + +AF+ L L L L DN+LQ+I S L ++ + +
Sbjct: 101 EGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160
Query: 244 QNGF 247
QN F
Sbjct: 161 QNPF 164
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 4/143 (2%)
Query: 36 LDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKL 94
L IP++ +I + L N IK + A Y L+ +DLS+ + F+ L
Sbjct: 23 LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 95 VELQLNHNK--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLR 152
L L NK P+ + + S ++ + N+I+ + F+ L L +L L DN+L+
Sbjct: 83 NSLVLYGNKITELPKSLFEGLFS-LQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQ 141
Query: 153 SVPTPSFIYLGMLAELRVGLNVF 175
++ +F L + + + N F
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 8/201 (3%)
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
+D RG GLT I N ++ +R L N ++ IP S +L +++ N S L
Sbjct: 16 VDCRGKGLTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNL 311
F+GL L L + G + +T + K F + + A L NL
Sbjct: 73 PDAFQGLRSLNSLVLYG-NKITELPKSLF-EGLFSLQLLLLNANKINCLRVDAFQDLHNL 130
Query: 312 YHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCN 368
L+L +N + ++ + ++T+ +A+NP C C++ WL + L TS C
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCT 190
Query: 369 SPAPLKYKSLISLSAEDLGCA 389
SP L K + + ++ C+
Sbjct: 191 SPRRLANKRIGQIKSKKFRCS 211
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 8/198 (4%)
Query: 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
+ C G GLT I N ++ +R L N ++ IP S +L +++ N S L
Sbjct: 16 VDCRGKGLTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNL 505
F+GL L L + G + +T + K F + + DA L NL
Sbjct: 73 PDAFQGLRSLNSLVLYG-NKITELPKSLF-EGLFSLQLLLLNANKINCLRVDAFQDLHNL 130
Query: 506 YHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCN 562
L+L +N + ++ + ++T+ +A+NP C C++ WL + L TS C
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCT 190
Query: 563 SPAPLKYKSLISLSAEDL 580
SP L K + + ++
Sbjct: 191 SPRRLANKRIGQIKSKKF 208
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 55/124 (44%)
Query: 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
QN I I F LR + L +NQ+ + +F L L L + N T L F
Sbjct: 41 QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100
Query: 184 NGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
GL L L L + + +AF+ L L L L DN+LQ+I S L ++ + +
Sbjct: 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160
Query: 244 QNGF 247
QN F
Sbjct: 161 QNPF 164
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 29/142 (20%)
Query: 62 SAIPIYL--SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK--HFPQQIVCSIISPR 117
+ IP L ++ + L T +IP G F P +KL + L++N+ + S
Sbjct: 24 TEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83
Query: 118 RVEIFGQNRISRIDQACFEG------------------------LTALRILYLDDNQLRS 153
+ ++G N+I+ + ++ FEG L L +L L DN+L++
Sbjct: 84 SLVLYG-NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142
Query: 154 VPTPSFIYLGMLAELRVGLNVF 175
+ +F L + + + N F
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 30/182 (16%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT--PSFIYLGMLAELRVGLNVFTTL 178
+ N+IS+I + F L L+ LY+ N L +P PS L ELR+ N +
Sbjct: 84 VLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS-----SLVELRIHDNRIRKV 138
Query: 179 ADGAFNGLGRLSALDLRGAGLTN--ISDNAFRGLS--------------------GLRSL 216
G F+GL ++ +++ G L N AF GL L L
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL 198
Query: 217 VLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVR 276
L N++Q+I + L + ++L L +G N M+E G L L+ L + + L+RV
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN-NKLSRVP 257
Query: 277 KG 278
G
Sbjct: 258 AG 259
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 108/276 (39%), Gaps = 37/276 (13%)
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
LDL+ ++ + + F+GL L +LVL +N++ I K S L +L++L I +N +
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX-XXXXXXXXXXXXIEEGALVGLPN 310
L L+ + + +V KG F+ E GA GL
Sbjct: 119 PNLPSSLVELR----IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173
Query: 311 LYHLNLKENAFTSFSESMLAWPE-LRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNS 369
L +L + E T + + PE L + + N I+ + L ++
Sbjct: 174 LNYLRISEAKLTGIPKDL---PETLNELHLDHNKIQA----IELEDL------------- 213
Query: 370 PAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT 429
L+Y L LG + I + + L LR L L +N+L +P L L
Sbjct: 214 ---LRYSKLYR-----LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLK 264
Query: 430 RLEELEIGQNGFSMLEAGCFKGLSY-LKRLEITGAS 464
L+ + + N + + F + + +KR G S
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 92 EKLVELQLNHNKHFPQQIVCSIISPRRVEI-FGQNRISRIDQACFEGLTALRILYLDDNQ 150
E L EL L+HNK ++ + + + G N+I I+ L LR L+LD+N+
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 151 LRSVPT--PSF-----IYLGMLAELRVGLNVFTTLADGA----FNGL 186
L VP P +YL +VG+N F + G +NG+
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 107/472 (22%), Positives = 176/472 (37%), Gaps = 83/472 (17%)
Query: 126 RISRIDQACFEGL--TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
++S F GL T L +L L N L V SF +L L + N L +
Sbjct: 243 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 302
Query: 184 NGLGRLSALDLRG---------AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 234
+GL + L+L+ A L I D +F+ L L L + DN + I + + L
Sbjct: 303 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 362
Query: 235 TRLEELEIGQNGFSMLEA---GCFKGLSY--LKRLEITGASNLTRVRKGAFADXXXXXXX 289
L+ L + N F+ L F L++ L L +T + ++++ AF+
Sbjct: 363 INLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLT-KNKISKIESDAFSWLGHLEVL 420
Query: 290 XXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN 349
+ GL N++ + L N + + + A
Sbjct: 421 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL------------------ 462
Query: 350 ILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRS 409
+ L+ +++RR +SP+P ++ L +L+ DL N GL L
Sbjct: 463 VPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIANINDD--MLEGLEKLEI 518
Query: 410 LVLTDNRLQSI--------PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
L L N L + P L L+ L L + NGF + FK L LK +++
Sbjct: 519 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL- 577
Query: 462 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSES 521
G +NL + F + +L LNL++N TS +
Sbjct: 578 GLNNLNTLPASVFNNQV-------------------------SLKSLNLQKNLITSVEKK 612
Query: 522 ML--AWPELRTIDIAENPIECGC-NILWLREMLVRRNT------SAVFCNSP 564
+ A+ L +D+ NP +C C +I W + +T S CN+P
Sbjct: 613 VFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 664
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 89/381 (23%), Positives = 148/381 (38%), Gaps = 47/381 (12%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
T + +L L NQLR +P +F L L VG N + L L L L+L+
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC---- 254
L+ +SD F + L L L N +Q I K L L++ NG S + G
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 154
Query: 255 ------------FKGL----------SYLKRLEITGASNLTRVRKGAFADXXXXXXXXXX 292
+ L S LK+LE++ ++ + G F
Sbjct: 155 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELS-SNQIKEFSPGCFHAIGRLFGLFLN 213
Query: 293 XXXXXXXIEEGALVGLPN--LYHLNLKENAFTSFSESM---LAWPELRTIDIAENPIECG 347
+ E + L N + +L+L + ++ S + L W L +D++ N +
Sbjct: 214 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 273
Query: 348 CN--ILWLREM----LVRRNTSAVFCNSPAPLKYKSLISL--SAEDLGCAGAGLTNISDN 399
N WL ++ L N +F +S L ++L S + A L I D
Sbjct: 274 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 333
Query: 400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA---GCFKGLSY-- 454
+F+ L L L + DN + I + + L L+ L + N F+ L F L++
Sbjct: 334 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSP 392
Query: 455 LKRLEITGASNLTRVRKGAFA 475
L L +T + ++++ AF+
Sbjct: 393 LHILNLT-KNKISKIESDAFS 412
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 77/182 (42%), Gaps = 34/182 (18%)
Query: 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQH---VDLSHTTWLIIPIGGFEPQEKLVELQLNH 101
PS+QRL+L +K VDS+ + L++ +DLS+ I E EKL L L H
Sbjct: 464 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 523
Query: 102 N------KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 155
N KH +P F +GL+ L IL L+ N +P
Sbjct: 524 NNLARLWKH---------ANPGGPIYF------------LKGLSHLHILNLESNGFDEIP 562
Query: 156 TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN----AFRGLS 211
F L L + +GLN TL FN L +L+L+ +T++ AFR L+
Sbjct: 563 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 622
Query: 212 GL 213
L
Sbjct: 623 EL 624
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 14/174 (8%)
Query: 120 EIF-GQNRISRIDQACFEGLTALRILYLDDNQLRSV---PTPSFIYLGMLAELRVGLNVF 175
EI+ N+ ++ + F + +L+ L L L++V P+P F L L L + N
Sbjct: 444 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNI 502
Query: 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNA--------FRGLSGLRSLVLTDNRLQSIP 227
+ D GL +L LDL+ L + +A +GLS L L L N IP
Sbjct: 503 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 562
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
+ L L+ +++G N + L A F LK L + + +T V K F
Sbjct: 563 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ-KNLITSVEKKVFG 615
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 5/131 (3%)
Query: 193 DLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 252
D LT + D+ ++ L LT N+L+ +P ++ ++L L++G N S LE
Sbjct: 20 DCSHLKLTQVPDDLPTNITVLN---LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 76
Query: 253 GCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLY 312
+ L LK L + + L+++ FA I+ V NL
Sbjct: 77 ELCQKLPMLKVLNLQ-HNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVKQKNLI 134
Query: 313 HLNLKENAFTS 323
L+L N +S
Sbjct: 135 TLDLSHNGLSS 145
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 107/472 (22%), Positives = 176/472 (37%), Gaps = 83/472 (17%)
Query: 126 RISRIDQACFEGL--TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
++S F GL T L +L L N L V SF +L L + N L +
Sbjct: 238 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 297
Query: 184 NGLGRLSALDLRG---------AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 234
+GL + L+L+ A L I D +F+ L L L + DN + I + + L
Sbjct: 298 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 357
Query: 235 TRLEELEIGQNGFSMLEA---GCFKGLSY--LKRLEITGASNLTRVRKGAFADXXXXXXX 289
L+ L + N F+ L F L++ L L +T + ++++ AF+
Sbjct: 358 INLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLT-KNKISKIESDAFSWLGHLEVL 415
Query: 290 XXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN 349
+ GL N++ + L N + + + A
Sbjct: 416 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL------------------ 457
Query: 350 ILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRS 409
+ L+ +++RR +SP+P ++ L +L+ DL N GL L
Sbjct: 458 VPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIANINDD--MLEGLEKLEI 513
Query: 410 LVLTDNRLQSI--------PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
L L N L + P L L+ L L + NGF + FK L LK +++
Sbjct: 514 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL- 572
Query: 462 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSES 521
G +NL + F + +L LNL++N TS +
Sbjct: 573 GLNNLNTLPASVFNNQV-------------------------SLKSLNLQKNLITSVEKK 607
Query: 522 ML--AWPELRTIDIAENPIECGC-NILWLREMLVRRNT------SAVFCNSP 564
+ A+ L +D+ NP +C C +I W + +T S CN+P
Sbjct: 608 VFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 659
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 89/381 (23%), Positives = 148/381 (38%), Gaps = 47/381 (12%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
T + +L L NQLR +P +F L L VG N + L L L L+L+
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC---- 254
L+ +SD F + L L L N +Q I K L L++ NG S + G
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 149
Query: 255 ------------FKGL----------SYLKRLEITGASNLTRVRKGAFADXXXXXXXXXX 292
+ L S LK+LE++ ++ + G F
Sbjct: 150 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELS-SNQIKEFSPGCFHAIGRLFGLFLN 208
Query: 293 XXXXXXXIEEGALVGLPN--LYHLNLKENAFTSFSESM---LAWPELRTIDIAENPIECG 347
+ E + L N + +L+L + ++ S + L W L +D++ N +
Sbjct: 209 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 268
Query: 348 CN--ILWLREM----LVRRNTSAVFCNSPAPLKYKSLISL--SAEDLGCAGAGLTNISDN 399
N WL ++ L N +F +S L ++L S + A L I D
Sbjct: 269 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 328
Query: 400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA---GCFKGLSY-- 454
+F+ L L L + DN + I + + L L+ L + N F+ L F L++
Sbjct: 329 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSP 387
Query: 455 LKRLEITGASNLTRVRKGAFA 475
L L +T + ++++ AF+
Sbjct: 388 LHILNLT-KNKISKIESDAFS 407
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 77/182 (42%), Gaps = 34/182 (18%)
Query: 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQH---VDLSHTTWLIIPIGGFEPQEKLVELQLNH 101
PS+QRL+L +K VDS+ + L++ +DLS+ I E EKL L L H
Sbjct: 459 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 518
Query: 102 N------KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 155
N KH +P F +GL+ L IL L+ N +P
Sbjct: 519 NNLARLWKH---------ANPGGPIYF------------LKGLSHLHILNLESNGFDEIP 557
Query: 156 TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN----AFRGLS 211
F L L + +GLN TL FN L +L+L+ +T++ AFR L+
Sbjct: 558 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 617
Query: 212 GL 213
L
Sbjct: 618 EL 619
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 14/174 (8%)
Query: 120 EIF-GQNRISRIDQACFEGLTALRILYLDDNQLRSV---PTPSFIYLGMLAELRVGLNVF 175
EI+ N+ ++ + F + +L+ L L L++V P+P F L L L + N
Sbjct: 439 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNI 497
Query: 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNA--------FRGLSGLRSLVLTDNRLQSIP 227
+ D GL +L LDL+ L + +A +GLS L L L N IP
Sbjct: 498 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 557
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
+ L L+ +++G N + L A F LK L + + +T V K F
Sbjct: 558 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ-KNLITSVEKKVFG 610
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 5/131 (3%)
Query: 193 DLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 252
D LT + D+ ++ L LT N+L+ +P ++ ++L L++G N S LE
Sbjct: 15 DCSHLKLTQVPDDLPTNITVLN---LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 71
Query: 253 GCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLY 312
+ L LK L + + L+++ FA I+ V NL
Sbjct: 72 ELCQKLPMLKVLNLQ-HNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVKQKNLI 129
Query: 313 HLNLKENAFTS 323
L+L N +S
Sbjct: 130 TLDLSHNGLSS 140
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 107/472 (22%), Positives = 176/472 (37%), Gaps = 83/472 (17%)
Query: 126 RISRIDQACFEGL--TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
++S F GL T L +L L N L V SF +L L + N L +
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292
Query: 184 NGLGRLSALDLRG---------AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 234
+GL + L+L+ A L I D +F+ L L L + DN + I + + L
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352
Query: 235 TRLEELEIGQNGFSMLEA---GCFKGLSY--LKRLEITGASNLTRVRKGAFADXXXXXXX 289
L+ L + N F+ L F L++ L L +T + ++++ AF+
Sbjct: 353 INLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLT-KNKISKIESDAFSWLGHLEVL 410
Query: 290 XXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN 349
+ GL N++ + L N + + + A
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL------------------ 452
Query: 350 ILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRS 409
+ L+ +++RR +SP+P ++ L +L+ DL N GL L
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIANINDD--MLEGLEKLEI 508
Query: 410 LVLTDNRLQSI--------PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
L L N L + P L L+ L L + NGF + FK L LK +++
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL- 567
Query: 462 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSES 521
G +NL + F + +L LNL++N TS +
Sbjct: 568 GLNNLNTLPASVFNNQV-------------------------SLKSLNLQKNLITSVEKK 602
Query: 522 ML--AWPELRTIDIAENPIECGC-NILWLREMLVRRNT------SAVFCNSP 564
+ A+ L +D+ NP +C C +I W + +T S CN+P
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 654
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 89/381 (23%), Positives = 148/381 (38%), Gaps = 47/381 (12%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
T + +L L NQLR +P +F L L VG N + L L L L+L+
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC---- 254
L+ +SD F + L L L N +Q I K L L++ NG S + G
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144
Query: 255 ------------FKGL----------SYLKRLEITGASNLTRVRKGAFADXXXXXXXXXX 292
+ L S LK+LE++ ++ + G F
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELS-SNQIKEFSPGCFHAIGRLFGLFLN 203
Query: 293 XXXXXXXIEEGALVGLPN--LYHLNLKENAFTSFSESM---LAWPELRTIDIAENPIECG 347
+ E + L N + +L+L + ++ S + L W L +D++ N +
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263
Query: 348 CN--ILWLREM----LVRRNTSAVFCNSPAPLKYKSLISL--SAEDLGCAGAGLTNISDN 399
N WL ++ L N +F +S L ++L S + A L I D
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323
Query: 400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA---GCFKGLSY-- 454
+F+ L L L + DN + I + + L L+ L + N F+ L F L++
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSP 382
Query: 455 LKRLEITGASNLTRVRKGAFA 475
L L +T + ++++ AF+
Sbjct: 383 LHILNLT-KNKISKIESDAFS 402
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 77/182 (42%), Gaps = 34/182 (18%)
Query: 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQH---VDLSHTTWLIIPIGGFEPQEKLVELQLNH 101
PS+QRL+L +K VDS+ + L++ +DLS+ I E EKL L L H
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513
Query: 102 N------KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 155
N KH +P F +GL+ L IL L+ N +P
Sbjct: 514 NNLARLWKH---------ANPGGPIYF------------LKGLSHLHILNLESNGFDEIP 552
Query: 156 TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN----AFRGLS 211
F L L + +GLN TL FN L +L+L+ +T++ AFR L+
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612
Query: 212 GL 213
L
Sbjct: 613 EL 614
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 14/174 (8%)
Query: 120 EIF-GQNRISRIDQACFEGLTALRILYLDDNQLRSV---PTPSFIYLGMLAELRVGLNVF 175
EI+ N+ ++ + F + +L+ L L L++V P+P F L L L + N
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNI 492
Query: 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNA--------FRGLSGLRSLVLTDNRLQSIP 227
+ D GL +L LDL+ L + +A +GLS L L L N IP
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
+ L L+ +++G N + L A F LK L + + +T V K F
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ-KNLITSVEKKVFG 605
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 5/131 (3%)
Query: 193 DLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 252
D LT + D+ ++ L LT N+L+ +P ++ ++L L++G N S LE
Sbjct: 10 DCSHLKLTQVPDDLPTNITVLN---LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66
Query: 253 GCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLY 312
+ L LK L + + L+++ FA I+ V NL
Sbjct: 67 ELCQKLPMLKVLNLQ-HNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124
Query: 313 HLNLKENAFTS 323
L+L N +S
Sbjct: 125 TLDLSHNGLSS 135
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
L L+ N+L+S+P F L L +L + N +L DG F+ L +L+ L L L ++
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
+ F L+ L+ L L N+L+S+P +LT L+++ + N + + C + + YL R
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW---DCSCPR-IDYLSR 148
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 151 LRSVPT--PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR 208
L SVPT PS L + N +L G F+ L +L+ L L + ++ D F
Sbjct: 19 LTSVPTGIPS-----SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD 73
Query: 209 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 264
L+ L L L +N+LQS+P KLT+L+EL + N + G F L+ L+++
Sbjct: 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 95 VELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSV 154
+EL+ N + P + + ++ + QN+I + F+ LT L ILYL +N+L+S+
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSL-SQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 155 PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
P F L L EL + N ++ DG F+ L L + L
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 166 AELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQS 225
E+R T++ G + RL +L L ++ F L+ L L L+ N++QS
Sbjct: 10 TEIRCNSKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS 66
Query: 226 IPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF 280
+P KLT+L L + +N L G F L+ LK L + + L V G F
Sbjct: 67 LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL-DTNQLKSVPDGIF 120
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 363 SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT 422
+ + CNS + I SA L L ++ F L+ L L L+ N++QS+P
Sbjct: 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69
Query: 423 KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF 474
KLT+L L + +N L G F L+ LK L + + L V G F
Sbjct: 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL-DTNQLKSVPDGIF 120
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+ ++ D F L+ L L L +N+LQS+P KLT+L+EL + N + G F L
Sbjct: 64 IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL 123
Query: 453 SYLKRL 458
+ L+++
Sbjct: 124 TSLQKI 129
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
L ++ + F L+ L+ L L N+L+S+P +LT L+++ + N + + C + +
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW---DCSCPR-I 143
Query: 453 SYLKR 457
YL R
Sbjct: 144 DYLSR 148
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 122/562 (21%), Positives = 215/562 (38%), Gaps = 112/562 (19%)
Query: 34 ANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEK 93
+++D IP H+ +++ L L +N I ++ +P G + K
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIK---------------------LPKGFPTEKLK 156
Query: 94 LVELQLNHNKHFPQQIVCSIISPRRVEI-FGQNRISRIDQACFE----------GLTALR 142
+++ Q N + ++ + S+ + + N I+ I+ F+ G L
Sbjct: 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216
Query: 143 ILY--LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS--ALDLRGAG 198
+++ L ++ ++S ++LG ++ ++ F GL +S +++L+
Sbjct: 217 VIFKGLKNSTIQS------LWLGTFEDMDD-----EDISPAVFEGLCEMSVESINLQKHY 265
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
NIS N F SGL+ L LT L +P+ L L+ L++L + N F L
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNF 324
Query: 259 SYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKE 318
L L I G N R+ G G L L NL
Sbjct: 325 PSLTHLSIKG--NTKRLELGT-----------------------GCLENLENL------- 352
Query: 319 NAFTSFSESMLAWPELRTIDIAENPIECG-CNILWLREMLVRRNTSAVFCNSPAPLK--- 374
R +D++ + IE C L LR + ++ + + N P LK
Sbjct: 353 ----------------RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY-NEPLSLKTEA 395
Query: 375 YKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 434
+K L DL + + + + F+ L L+ L L+ + L + L L+ L
Sbjct: 396 FKECPQLELLDLAFTRLKVKD-AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454
Query: 435 EIGQNGFSMLEAGCFKGLSYLKRLEITGAS--NLTRVRKGAFADXXXXXXXXXXXXXXXX 492
+ N F L L RLEI S +L+ + + AF
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514
Query: 493 IIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCN----ILWL 547
E AL L +Y LNL N + S+L + RTI++ +NP++C C+ + W
Sbjct: 515 SSIE-ALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572
Query: 548 REMLVR-RNTSAVFCNSPAPLK 568
+E + + +T C +P L+
Sbjct: 573 KENMQKLEDTEDTLCENPPLLR 594
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 133/333 (39%), Gaps = 19/333 (5%)
Query: 70 LQHVDLSHTTWLIIPIG--GFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRI 127
LQ +DL+ T +P G G +KLV L N ++ Q + S + I G +
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLV-LSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 128 SRIDQACFEGLTALRILYL--DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 185
+ C E L LR L L DD + L L L + N +L AF
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 186 LGRLSALDLRGAGL-TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 244
+L LDL L + + F+ L L+ L L+ + L + L L+ L +
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458
Query: 245 NGFSMLEAGCFKGLSYLKRLEITGAS--NLTRVRKGAFADXXXXXXXXXXXXXXXXXIEE 302
N F L L RLEI S +L+ + + AF E
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518
Query: 303 GALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCN----ILWLREML 357
AL L +Y LNL N + S+L + RTI++ +NP++C C+ + W +E +
Sbjct: 519 -ALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENM 576
Query: 358 VR-RNTSAVFCNSPAPLKYKSLISLSAEDLGCA 389
+ +T C +P L+ + LS L C+
Sbjct: 577 QKLEDTEDTLCENPPLLRG---VRLSDVTLSCS 606
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 132/327 (40%), Gaps = 33/327 (10%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L NV T+ + F+ L L+ LDL + I ++ F+ L +LVLT N L +
Sbjct: 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE--ITGASNLTRVR--KGAFADX 283
LS L+ L Q G S ++ F L K LE G+++++ ++ KG +
Sbjct: 98 ETALSGPKALKHLFFIQTGISSID---FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154
Query: 284 XXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP 343
+ +L NL LNL N ++++
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213
Query: 344 IECGCNILWLREMLVRRNTSAVFCNS--------PAPLKYKSLISLSAEDLGCAGAGLTN 395
N+L + + L +++ + +P ++ L +S E + N
Sbjct: 214 -----NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268
Query: 396 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML---EAGCFKGL 452
IS N F SGL+ L LT L +P+ L L+ L++L + N F L A F L
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSL 327
Query: 453 SYL------KRLEI-TGA-SNLTRVRK 471
++L KRLE+ TG NL +R+
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRE 354
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 137 GLT-ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
GLT A++ L L +N++ + L L + N T+ + +F+ LG L LDL
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 196 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSI-PTKQLSKLTRLEELEIGQ-NGFSMLEAG 253
L+N+S + F+ LS L L L N +++ T S LT+L+ L +G + F+ ++
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 142
Query: 254 CFKGLSYLKRLEITGA 269
F GL++L+ LEI +
Sbjct: 143 DFAGLTFLEELEIDAS 158
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 2/145 (1%)
Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 181
NRI+ I + + L+ L L N + ++ SF LG L L + N + L+
Sbjct: 33 LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 92
Query: 182 AFNGLGRLSALDLRGAGLTNISDNA-FRGLSGLRSLVLTD-NRLQSIPTKQLSKLTRLEE 239
F L L+ L+L G + + + F L+ L+ L + + + I K + LT LEE
Sbjct: 93 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 152
Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRL 264
LEI + E K + + L
Sbjct: 153 LEIDASDLQSYEPKSLKSIQNVSHL 177
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 94/411 (22%), Positives = 155/411 (37%), Gaps = 44/411 (10%)
Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
+ +LDL +T IS++ + L++LVLT N + +I S L LE L++ N S
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 249 MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGL 308
L + FK LS L L + G T F+ I+ GL
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 147
Query: 309 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 368
L L + + S+ L++I + I + L E+ V TS+V C
Sbjct: 148 TFLEELEIDASDLQSYEPK-----SLKSIQNVSHLILHMKQHILLLEIFVDV-TSSVEC- 200
Query: 369 SPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 428
L+ L + +L G TN F R++ +TD L + K L+++
Sbjct: 201 --LELRDTDLDTFHFSEL---STGETNSLIKKF----TFRNVKITDESLFQV-MKLLNQI 250
Query: 429 TRLEELEIGQ---NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXX 485
+ L ELE NG A + ++E L R F D
Sbjct: 251 SGLLELEFDDCTLNGVGNFRASDNDRVIDPGKVETLTIRRLHIPRFYLFYDLSTLYSLTE 310
Query: 486 XXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESML------------AWPELRTIDI 533
+E + +P L +LK + SE+++ AWP L+T+ +
Sbjct: 311 RVKRIT--VENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLIL 368
Query: 534 AENPI----ECGCNILWLREML---VRRNTSAVF---CNSPAPLKYKSLIS 574
+N + + G +L L+ + + +N+ C P +KY +L S
Sbjct: 369 RQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSS 419
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 106/502 (21%), Positives = 191/502 (38%), Gaps = 73/502 (14%)
Query: 25 RDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV------------------------ 60
R+ C +L+ IPS +++ L LS NRI +
Sbjct: 6 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 65
Query: 61 -DSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQL--NHNKHFPQQIVCSIISPR 117
+ + SL+H+DLS+ + F+P L L L N K + + S ++
Sbjct: 66 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 125
Query: 118 RVEIFGQ-NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 176
++ G + ++I + F GLT L L +D + L+S S + ++ L + +
Sbjct: 126 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 185
Query: 177 TLADGAFNGLGRLSALDLRGAGLTNI--------SDNAFRGLSGLRSLVLTDNRLQSIPT 228
L + + + L+LR L N+ R++ +TD L +
Sbjct: 186 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-M 244
Query: 229 KQLSKLTRLEELEIGQ---NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXX 285
K L++++ L ELE NG A + ++E L R F D
Sbjct: 245 KLLNQISGLLELEFDDCTLNGVGNFRASDNDRVIDPGKVETLTIRRLHIPRFYLFYD--L 302
Query: 286 XXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESML------------AWPE 333
+E + +P L +LK + SE+++ AWP
Sbjct: 303 STLYSLTERVKRITVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPS 362
Query: 334 LRTIDIAENPI----ECGCNILWLREML---VRRNTSAVF---CNSPAPLKYKSLISLSA 383
L+T+ + +N + + G +L L+ + + +N+ C P +KY +L S
Sbjct: 363 LQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRI 422
Query: 384 EDL-GCAGAGL------TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 436
+ GC L N + L L+ L ++ N+L ++P L L L L+I
Sbjct: 423 HSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTLPDASL--LPMLLVLKI 480
Query: 437 GQNGFSMLEAGCFKGLSYLKRL 458
+N + G F L+ L+++
Sbjct: 481 SRNQLKSVPDGIFDRLTSLQKI 502
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 102/478 (21%), Positives = 185/478 (38%), Gaps = 73/478 (15%)
Query: 46 SIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQL--NHN 102
++Q LVL++N I T++ + SL+H+DLS+ + F+P L L L N
Sbjct: 51 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 110
Query: 103 KHFPQQIVCSIISPRRVEIFGQ-NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY 161
K + + S ++ ++ G + ++I + F GLT L L +D + L+S S
Sbjct: 111 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 170
Query: 162 LGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNI--------SDNAFRGLSGL 213
+ ++ L + + L + + + L+LR L N+
Sbjct: 171 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 230
Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ---NGFSMLEAGCFKGLSYLKRLEITGAS 270
R++ +TD L + K L++++ L ELE NG A + ++E
Sbjct: 231 RNVKITDESLFQV-MKLLNQISGLLELEFDDCTLNGVGNFRASDNDRVIDPGKVETLTIR 289
Query: 271 NLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESML- 329
L R F D +E + +P L +LK + SE+++
Sbjct: 290 RLHIPRFYLFYDLSTLYSLTERVKRIT--VENSKVFLVPCLLSQHLKSLEYLDLSENLMV 347
Query: 330 -----------AWPELRTIDIAENPI----ECGCNILWLREML---VRRNTSAVF---CN 368
AWP L+T+ + +N + + G +L L+ + + +N+ C
Sbjct: 348 EEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQ 407
Query: 369 SPAPLKYKSLISLSAEDL-GCAGAGLT----------------------NISDNAFRGLS 405
P +KY +L S + GC L IS N L
Sbjct: 408 WPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTLP 467
Query: 406 G------LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 457
L L ++ N+L+S+P +LT L+++ + N + + C + + YL R
Sbjct: 468 DASLLPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW---DCSCPR-IDYLSR 521
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 382 SAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 441
+ + L + +T IS++ + L++LVLT N + +I S L LE L++ N
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 442 SMLEAGCFKGLSYLKRLEITG 462
S L + FK LS L L + G
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLG 107
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 137 GLT-ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
GLT A++ L L +N++ + L L + N T+ + +F+ LG L LDL
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 196 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSI-PTKQLSKLTRLEELEIGQ-NGFSMLEAG 253
L+N+S + F+ LS L L L N +++ T S LT+L+ L +G + F+ ++
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
Query: 254 CFKGLSYLKRLEITGA 269
F GL++L+ LEI +
Sbjct: 169 DFAGLTFLEELEIDAS 184
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 110/270 (40%), Gaps = 17/270 (6%)
Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
+ +LDL +T IS++ + L++LVLT N + +I S L LE L++ N S
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 249 MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGL 308
L + FK LS L L + G T F+ I+ GL
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173
Query: 309 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 368
L L + + S+ L++I + I + L E+ V TS+V C
Sbjct: 174 TFLEELEIDASDLQSYEP-----KSLKSIQNVSHLILHMKQHILLLEIFVDV-TSSVEC- 226
Query: 369 SPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 428
L+ L + +L G TN F R++ +TD L + K L+++
Sbjct: 227 --LELRDTDLDTFHFSEL---STGETNSLIKKFT----FRNVKITDESLFQV-MKLLNQI 276
Query: 429 TRLEELEIGQNGFSMLEAGCFKGLSYLKRL 458
+ L ELE +N + G F L+ L+++
Sbjct: 277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 107/252 (42%), Gaps = 39/252 (15%)
Query: 47 IQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQL--NHNK 103
+Q LVL++N I T++ + SL+H+DLS+ + F+P L L L N K
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 104 HFPQQIVCSIISPRRVEIFGQ-NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 162
+ + S ++ ++ G + ++I + F GLT L L +D + L+S S +
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197
Query: 163 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLR------------GAGLTN--ISDNAFR 208
++ L + + L + + + L+LR G TN I FR
Sbjct: 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257
Query: 209 G-----------------LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
+SGL L + N+L+S+P +LT L+++ + N + +
Sbjct: 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW---D 314
Query: 252 AGCFKGLSYLKR 263
C + + YL R
Sbjct: 315 CSCPR-IDYLSR 325
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 111/276 (40%), Gaps = 37/276 (13%)
Query: 25 RDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV------------------------ 60
R+ C +L+ IPS +++ L LS NRI +
Sbjct: 32 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91
Query: 61 -DSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQL--NHNKHFPQQIVCSIISPR 117
+ + SL+H+DLS+ + F+P L L L N K + + S ++
Sbjct: 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151
Query: 118 RVEIFGQ-NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 176
++ G + ++I + F GLT L L +D + L+S S + ++ L + +
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211
Query: 177 TLADGAFNGLGRLSALDLRGAGLTNI--------SDNAFRGLSGLRSLVLTDNRLQSIPT 228
L + + + L+LR L N+ R++ +TD L +
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-M 270
Query: 229 KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 264
K L++++ L ELE +N + G F L+ L+++
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 382 SAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 441
+ + L + +T IS++ + L++LVLT N + +I S L LE L++ N
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 442 SMLEAGCFKGLSYLKRLEITG 462
S L + FK LS L L + G
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLG 133
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 382 SAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI-PTKQLSKLTRLEELEIGQ-N 439
S E L + L+N+S + F+ LS L L L N +++ T S LT+L+ L +G +
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160
Query: 440 GFSMLEAGCFKGLSYLKRLEITGA 463
F+ ++ F GL++L+ LEI +
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDAS 184
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
L L N LR + + SF L L + T+ DGA+ L LS L L G + +++
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSY 260
AF GLS L+ LV + L S+ + L L+EL + N F + E F L+
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTN 150
Query: 261 LKRLEITG 268
L+ L+++
Sbjct: 151 LEHLDLSS 158
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 106/292 (36%), Gaps = 78/292 (26%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N L +F L LDL + I D A++ LS L +L+LT N +QS
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 90
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
L G F GLS L++L + +NL
Sbjct: 91 ----------------------LALGAFSGLSSLQKL-VAVETNLAS------------- 114
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFS--ESMLAWPELRTIDIAENPIE 345
+E + L L LN+ N SF E L +D++ N I+
Sbjct: 115 ------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLS 405
+++C L+ + L L + + I AF+ +
Sbjct: 163 ------------------SIYCTD---LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Query: 406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 457
L+ L L N+L+S+P +LT L+++ + N + + C + + YL R
Sbjct: 202 -LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW---DCSCPR-IDYLSR 248
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N + + F L++L L +++++ ++ L L+ L + N +LA GAF+
Sbjct: 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ-LSKLTRLEELEIG 243
GL L L L ++ + L L+ L + N +QS + S LT LE L++
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 244 QN 245
N
Sbjct: 158 SN 159
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+ I D A++ LS L +L+LT N +QS+ S L+ L++L + + LE L
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 453 SYLKRLEITGASNLTRVRK 471
LK L + A NL + K
Sbjct: 124 KTLKELNV--AHNLIQSFK 140
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 32/171 (18%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA- 179
I N I + F GL++L+ L + L S+ +L L EL V N+ +
Sbjct: 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 180 DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSG--------------------------- 212
F+ L L LDL + +I R L
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Query: 213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
L+ L L N+L+S+P +LT L+++ + N + + C + + YL R
Sbjct: 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW---DCSCPR-IDYLSR 248
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 1/139 (0%)
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 438
+ S ++L + L ++ +F L+ L L+ +Q+I L+ L L +
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 439 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDA 498
N L G F GLS L++L + +NL + +
Sbjct: 86 NPIQSLALGAFSGLSSLQKL-VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 499 LVGLPNLYHLNLKENAFTS 517
L NL HL+L N S
Sbjct: 145 FSNLTNLEHLDLSSNKIQS 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
L L N LR + + SF L L + T+ DGA+ L LS L L G + +++
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSY 260
AF GLS L+ LV + L S+ + L L+EL + N F + E F L+
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTN 152
Query: 261 LKRLEITG 268
L+ L+++
Sbjct: 153 LEHLDLSS 160
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N + + F L++L L +++++ ++ L L+ L + N +LA GAF+
Sbjct: 40 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 99
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ-LSKLTRLEELEIG 243
GL L L L ++ + L L+ L + N +QS + S LT LE L++
Sbjct: 100 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
Query: 244 QN 245
N
Sbjct: 160 SN 161
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 106/292 (36%), Gaps = 78/292 (26%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N L +F L LDL + I D A++ LS L +L+LT N +QS
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 92
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
L G F GLS L++L + +NL
Sbjct: 93 ----------------------LALGAFSGLSSLQKL-VAVETNLAS------------- 116
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFS--ESMLAWPELRTIDIAENPIE 345
+E + L L LN+ N SF E L +D++ N I+
Sbjct: 117 ------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLS 405
+++C L+ + L L + + I AF+ +
Sbjct: 165 ------------------SIYCTD---LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 203
Query: 406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 457
L+ L L N+L+S+P +LT L+++ + N + + C + + YL R
Sbjct: 204 -LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW---DCSCPR-IDYLSR 250
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+ I D A++ LS L +L+LT N +QS+ S L+ L++L + + LE L
Sbjct: 66 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 125
Query: 453 SYLKRLEITGASNLTRVRK 471
LK L + A NL + K
Sbjct: 126 KTLKELNV--AHNLIQSFK 142
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 32/171 (18%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA- 179
I N I + F GL++L+ L + L S+ +L L EL V N+ +
Sbjct: 84 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 143
Query: 180 DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSG--------------------------- 212
F+ L L LDL + +I R L
Sbjct: 144 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 203
Query: 213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
L+ L L N+L+S+P +LT L+++ + N + + C + + YL R
Sbjct: 204 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW---DCSCPR-IDYLSR 250
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 1/139 (0%)
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 438
+ S ++L + L ++ +F L+ L L+ +Q+I L+ L L +
Sbjct: 28 LPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 87
Query: 439 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDA 498
N L G F GLS L++L + +NL + +
Sbjct: 88 NPIQSLALGAFSGLSSLQKL-VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 146
Query: 499 LVGLPNLYHLNLKENAFTS 517
L NL HL+L N S
Sbjct: 147 FSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
L L N LR + + SF L L + T+ DGA+ L LS L L G + +++
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSY 260
AF GLS L+ LV + L S+ + L L+EL + N F + E F L+
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTN 151
Query: 261 LKRLEITG 268
L+ L+++
Sbjct: 152 LEHLDLSS 159
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N + + F L++L L +++++ ++ L L+ L + N +LA GAF+
Sbjct: 39 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 98
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ-LSKLTRLEELEIG 243
GL L L L ++ + L L+ L + N +QS + S LT LE L++
Sbjct: 99 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
Query: 244 QN 245
N
Sbjct: 159 SN 160
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 106/292 (36%), Gaps = 78/292 (26%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N L +F L LDL + I D A++ LS L +L+LT N +QS
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 91
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
L G F GLS L++L + +NL
Sbjct: 92 ----------------------LALGAFSGLSSLQKL-VAVETNLAS------------- 115
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFS--ESMLAWPELRTIDIAENPIE 345
+E + L L LN+ N SF E L +D++ N I+
Sbjct: 116 ------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLS 405
+++C L+ + L L + + I AF+ +
Sbjct: 164 ------------------SIYCTD---LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 202
Query: 406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 457
L+ L L N+L+S+P +LT L+++ + N + + C + + YL R
Sbjct: 203 -LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW---DCSCPR-IDYLSR 249
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+ I D A++ LS L +L+LT N +QS+ S L+ L++L + + LE L
Sbjct: 65 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 453 SYLKRLEITGASNLTRVRK 471
LK L + A NL + K
Sbjct: 125 KTLKELNV--AHNLIQSFK 141
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 32/171 (18%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA- 179
I N I + F GL++L+ L + L S+ +L L EL V N+ +
Sbjct: 83 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 142
Query: 180 DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSG--------------------------- 212
F+ L L LDL + +I R L
Sbjct: 143 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 202
Query: 213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
L+ L L N+L+S+P +LT L+++ + N + + C + + YL R
Sbjct: 203 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW---DCSCPR-IDYLSR 249
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 1/139 (0%)
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 438
+ S ++L + L ++ +F L+ L L+ +Q+I L+ L L +
Sbjct: 27 LPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 86
Query: 439 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDA 498
N L G F GLS L++L + +NL + +
Sbjct: 87 NPIQSLALGAFSGLSSLQKL-VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 145
Query: 499 LVGLPNLYHLNLKENAFTS 517
L NL HL+L N S
Sbjct: 146 FSNLTNLEHLDLSSNKIQS 164
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
L L N LR + + SF L L + T+ DGA+ L LS L L G + +++
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSY 260
AF GLS L+ LV + L S+ + L L+EL + N F + E F L+
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTN 151
Query: 261 LKRLEITG 268
L+ L+++
Sbjct: 152 LEHLDLSS 159
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N + + F L++L L +++++ ++ L L+ L + N +LA GAF+
Sbjct: 39 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 98
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ-LSKLTRLEELEIG 243
GL L L L ++ + L L+ L + N +QS + S LT LE L++
Sbjct: 99 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
Query: 244 QN 245
N
Sbjct: 159 SN 160
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 106/292 (36%), Gaps = 78/292 (26%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N L +F L LDL + I D A++ LS L +L+LT N +QS
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 91
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
L G F GLS L++L + +NL
Sbjct: 92 ----------------------LALGAFSGLSSLQKL-VAVETNLAS------------- 115
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFS--ESMLAWPELRTIDIAENPIE 345
+E + L L LN+ N SF E L +D++ N I+
Sbjct: 116 ------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLS 405
+++C L+ + L L + + I AF+ +
Sbjct: 164 ------------------SIYCTD---LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 202
Query: 406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 457
L+ L L N+L+S+P +LT L+++ + N + + C + + YL R
Sbjct: 203 -LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW---DCSCPR-IDYLSR 249
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+ I D A++ LS L +L+LT N +QS+ S L+ L++L + + LE L
Sbjct: 65 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 453 SYLKRLEITGASNLTRVRK 471
LK L + A NL + K
Sbjct: 125 KTLKELNV--AHNLIQSFK 141
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 95/261 (36%), Gaps = 56/261 (21%)
Query: 32 QEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEP 90
+E N IP + S + L LS N ++ + S + + LQ +DLS I G ++
Sbjct: 16 EELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 75
Query: 91 QEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQ 150
L L I N I + F GL++L+ L +
Sbjct: 76 LSHLSTL-----------------------ILTGNPIQSLALGAFSGLSSLQKLVAVETN 112
Query: 151 LRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLSALDLRGAGLTNISDNAFRG 209
L S+ +L L EL V N+ + F+ L L LDL + +I R
Sbjct: 113 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 172
Query: 210 LSG---------------------------LRSLVLTDNRLQSIPTKQLSKLTRLEELEI 242
L L+ L L N+L+S+P +LT L+++ +
Sbjct: 173 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 232
Query: 243 GQNGFSMLEAGCFKGLSYLKR 263
N + + C + + YL R
Sbjct: 233 HTNPW---DCSCPR-IDYLSR 249
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 1/139 (0%)
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 438
+ S ++L + L ++ +F L+ L L+ +Q+I L+ L L +
Sbjct: 27 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 86
Query: 439 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDA 498
N L G F GLS L++L + +NL + +
Sbjct: 87 NPIQSLALGAFSGLSSLQKL-VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 145
Query: 499 LVGLPNLYHLNLKENAFTS 517
L NL HL+L N S
Sbjct: 146 FSNLTNLEHLDLSSNKIQS 164
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 30/178 (16%)
Query: 216 LVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTR 274
L+L DN L I + L +L L +LE+ +N + +E F+G S+++ L++ G + +
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL-GENKIKE 92
Query: 275 VRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTS-FSESMLAWPE 333
+ F +GL L LNL +N + S
Sbjct: 93 ISNKMF-------------------------LGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 334 LRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSAEDLGCA 389
L ++++A NP C C++ W E L ++ N A C +P+ ++ + L + C+
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCS 185
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 33/185 (17%)
Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEA 446
C G GL I + + L+L DN L I + L +L L +LE+ +N + +E
Sbjct: 15 CTGRGLKEIPRDIPLHTT---ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71
Query: 447 GCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLY 506
F+G S+++ L++ G + + + F +GL L
Sbjct: 72 NAFEGASHIQELQL-GENKIKEISNKMF-------------------------LGLHQLK 105
Query: 507 HLNLKENAFTS-FSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNS 563
LNL +N + S L ++++A NP C C++ W E L ++ N A C +
Sbjct: 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA 165
Query: 564 PAPLK 568
P+ ++
Sbjct: 166 PSKVR 170
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 179 ADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 238
+DG F L L L+L+ LT I NAF G S ++ L L +N+++ I K L +L+
Sbjct: 46 SDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK 105
Query: 239 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN 271
L + N S + G F+ L+ L L + ASN
Sbjct: 106 TLNLYDNQISCVMPGSFEHLNSLTSLNL--ASN 136
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 144 LYLDDNQLRSVPTPS-FIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNI 202
L L+DN+L + + F L L +L + N T + AF G + L L + I
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
Query: 203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
S+ F GL L++L L DN++ + L L L + N F+
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVF 175
G+N+I I F GL L+ L L DNQ+ V SF +L L L + N F
Sbjct: 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
L L N LR + + SF L L + T+ DGA+ L LS L L G + +++
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSY 260
AF GLS L+ LV + L S+ + L L+EL + N F + E F L+
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTN 152
Query: 261 LKRLEITG 268
L+ L+++
Sbjct: 153 LEHLDLSS 160
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N + + F L++L L +++++ ++ L L+ L + N +LA GAF+
Sbjct: 40 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 99
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ-LSKLTRLEELEIG 243
GL L L L ++ + L L+ L + N +QS + S LT LE L++
Sbjct: 100 GLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
Query: 244 QN 245
N
Sbjct: 160 SN 161
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 106/292 (36%), Gaps = 78/292 (26%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N L +F L LDL + I D A++ LS L +L+LT N +QS
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 92
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
L G F GLS L++L + +NL
Sbjct: 93 ----------------------LALGAFSGLSSLQKL-VALETNLAS------------- 116
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFS--ESMLAWPELRTIDIAENPIE 345
+E + L L LN+ N SF E L +D++ N I+
Sbjct: 117 ------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLS 405
+++C L+ + L L + + I AF+ +
Sbjct: 165 ------------------SIYCTD---LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 203
Query: 406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 457
L+ L L N+L+S+P +LT L+++ + N + + C + + YL R
Sbjct: 204 -LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW---DCSCPR-IDYLSR 250
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+ I D A++ LS L +L+LT N +QS+ S L+ L++L + + LE L
Sbjct: 66 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHL 125
Query: 453 SYLKRLEITGASNLTRVRK 471
LK L + A NL + K
Sbjct: 126 KTLKELNV--AHNLIQSFK 142
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 32/171 (18%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA- 179
I N I + F GL++L+ L + L S+ +L L EL V N+ +
Sbjct: 84 ILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 143
Query: 180 DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSG--------------------------- 212
F+ L L LDL + +I R L
Sbjct: 144 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 203
Query: 213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
L+ L L N+L+S+P +LT L+++ + N + + C + + YL R
Sbjct: 204 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW---DCSCPR-IDYLSR 250
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 1/139 (0%)
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 438
+ S ++L + L ++ +F L+ L L+ +Q+I L+ L L +
Sbjct: 28 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 87
Query: 439 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDA 498
N L G F GLS L++L + +NL + +
Sbjct: 88 NPIQSLALGAFSGLSSLQKL-VALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 146
Query: 499 LVGLPNLYHLNLKENAFTS 517
L NL HL+L N S
Sbjct: 147 FSNLTNLEHLDLSSNKIQS 165
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 129/330 (39%), Gaps = 64/330 (19%)
Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 181
FG + I DQ F GL + +LD + F++ + VF TL D
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLD-------LSHGFVF-------SLNSRVFETLKD- 291
Query: 182 AFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 241
L L+L + I+D AF GL L+ L L+ N L + + L ++ ++
Sbjct: 292 -------LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 242 IGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIE 301
+ +N ++++ FK L L+ L++ + T + D +
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF---------------LS 389
Query: 302 EGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILW-------LR 354
LV LP + NL N I ++EN +E +IL+ L+
Sbjct: 390 GNKLVTLPKI---NLTANL----------------IHLSENRLE-NLDILYFLLRVPHLQ 429
Query: 355 EMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTD 414
+++ +N + P + SL L + A T + + F GLS L+ L L
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489
Query: 415 NRLQSIPTKQLSKLTRLEELEIGQNGFSML 444
N L S+P S LT L L + N ++L
Sbjct: 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 139/340 (40%), Gaps = 43/340 (12%)
Query: 130 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV---GLNVFTTLADGAFNGL 186
ID+ F L LRIL L +++ + +F L L ELR+ GL+ L DG F L
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD-AVLKDGYFRNL 122
Query: 187 GRLSALDLRGAGLTNISDN-AFRGLSGLRSLVLTDNRLQSIPTKQLSKL--TRLEELEIG 243
L+ LDL + ++ + +F L+ L+S+ + N++ + +L L L +
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 244 QNG-FSMLEAGCFKGLSYLKR--LEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXI 300
N +S + K ++ + LEI S G D I
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSG-----NGWTVDITGNFSNAISKSQAFSLI 237
Query: 301 EEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR 360
++G +H N+K+ +F+ LA +R +D++ V
Sbjct: 238 LAHHIMGAGFGFH-NIKDPDQNTFAG--LARSSVRHLDLSHG--------------FVFS 280
Query: 361 NTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI 420
S VF ++L L L A + I+D AF GL L+ L L+ N L +
Sbjct: 281 LNSRVF---------ETLKDLKV--LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
Query: 421 PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 460
+ L ++ +++ +N ++++ FK L L+ L++
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 179
FEGL+ L++LYL+ N L S+P F +L L L + N T L+
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR 208
N LR + + SF L L + T+ DGA+ L LS L L G + +++ AF
Sbjct: 62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121
Query: 209 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSYLKRLE 265
GLS L+ LV + L S+ + L L+EL + N F + E F L+ L+ L+
Sbjct: 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLD 179
Query: 266 ITG 268
++
Sbjct: 180 LSS 182
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N + + F L++L L +++++ ++ L L+ L + N +LA GAF+
Sbjct: 62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ-LSKLTRLEELEIG 243
GL L L L ++ + L L+ L + N +QS + S LT LE L++
Sbjct: 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181
Query: 244 QN 245
N
Sbjct: 182 SN 183
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+ I D A++ LS L +L+LT N +QS+ S L+ L++L + + LE L
Sbjct: 88 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 147
Query: 453 SYLKRLEITGASNLTRVRK 471
LK L + A NL + K
Sbjct: 148 KTLKELNV--AHNLIQSFK 164
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 1/139 (0%)
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 438
+ S ++L + L ++ +F L+ L L+ +Q+I L+ L L +
Sbjct: 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109
Query: 439 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDA 498
N L G F GLS L++L + +NL + +
Sbjct: 110 NPIQSLALGAFSGLSSLQKL-VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 168
Query: 499 LVGLPNLYHLNLKENAFTS 517
L NL HL+L N S
Sbjct: 169 FSNLTNLEHLDLSSNKIQS 187
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 53/128 (41%), Gaps = 16/128 (12%)
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR 208
N V PS +L + R GL+ + F G L LDL G+ +S N F
Sbjct: 363 NAFSEVDLPSLEFLDLS---RNGLSFKGCCSQSDF-GTISLKYLDLSFNGVITMSSN-FL 417
Query: 209 GLSGLRSLVLTDNRLQSIPTKQLSK------LTRLEELEIGQNGFSMLEAGCFKGLSYLK 262
GL L L + L KQ+S+ L L L+I + G F GLS L+
Sbjct: 418 GLEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 472
Query: 263 RLEITGAS 270
L++ G S
Sbjct: 473 VLKMAGNS 480
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
L L N LR + + SF L L + T+ DGA+ L LS L L G + +++
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSY 260
AF GLS L+ LV + L S+ + L L+EL + N F + E F L+
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTN 150
Query: 261 LKRLEITG 268
L+ L+++
Sbjct: 151 LEHLDLSS 158
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 124/332 (37%), Gaps = 51/332 (15%)
Query: 120 EIFGQNRISRIDQACFEGLTAL-----RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV 174
E + + + D++ EGL L R+ YLD YL + +L
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD------------YYLDDIIDL------ 277
Query: 175 FTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 234
FN L +S+ L + + D ++ G + L L + + PT +L L
Sbjct: 278 --------FNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPTLKLKSL 327
Query: 235 TRLE-ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKG--AFADXXXXXXXXX 291
RL G N FS ++ L LE S KG + +D
Sbjct: 328 KRLTFTSNKGGNAFSEVD---------LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 292 XXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSE--SMLAWPELRTIDIAENPIECGCN 349
+GL L HL+ + + SE L+ L +DI+ N
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 350 ILW--LREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGL 407
++ L + V + F + P + L +L+ DL + L +S AF LS L
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL--SQCQLEQLSPTAFNSLSSL 496
Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439
+ L + N+L+S+P +LT L+++ + N
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N + + F L++L L +++++ ++ L L+ L + N +LA GAF+
Sbjct: 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ-LSKLTRLEELEIG 243
GL L L L ++ + L L+ L + N +QS + S LT LE L++
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 244 QN 245
N
Sbjct: 158 SN 159
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 62 SAIPIYLSLQ---HVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRR 118
S ++LSL+ ++D+SHT + G F L L++ N F + + I + R
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELR 470
Query: 119 VEIF---GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 173
F Q ++ ++ F L++L++L + NQL+SVP F L L ++ + N
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+ I D A++ LS L +L+LT N +QS+ S L+ L++L + + LE L
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 453 SYLKRLEITGASNLTRVRK 471
LK L + A NL + K
Sbjct: 124 KTLKELNV--AHNLIQSFK 140
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 90/246 (36%), Gaps = 39/246 (15%)
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR 208
N V PS +L + R GL+ + F G L LDL G+ +S N F
Sbjct: 339 NAFSEVDLPSLEFLDLS---RNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSSN-FL 393
Query: 209 GLSGLRSLVLTDNRLQSIPTKQLSK------LTRLEELEIGQNGFSMLEAGCFKGLSYLK 262
GL L L + L KQ+S+ L L L+I + G F GLS L+
Sbjct: 394 GLEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 263 RLEITGASN--------LTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHL 314
L++ G S T +R F D + A L +L L
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLD---------LSQCQLEQLSPTAFNSLSSLQVL 499
Query: 315 NLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNIL-----WLREMLVRRNTSAVFCN 368
N+ N S + + L+ I + NP +C C + WL + + SA
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG 559
Query: 369 SPAPLK 374
S P++
Sbjct: 560 SGKPVR 565
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 1/139 (0%)
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 438
+ S ++L + L ++ +F L+ L L+ +Q+I L+ L L +
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 439 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDA 498
N L G F GLS L++L + +NL + +
Sbjct: 86 NPIQSLALGAFSGLSSLQKL-VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 499 LVGLPNLYHLNLKENAFTS 517
L NL HL+L N S
Sbjct: 145 FSNLTNLEHLDLSSNKIQS 163
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
L L N LR + + SF L L + T+ DGA+ L LS L L G + +++
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSY 260
AF GLS L+ LV + L S+ + L L+EL + N F + E F L+
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTN 150
Query: 261 LKRLEITG 268
L+ L+++
Sbjct: 151 LEHLDLSS 158
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N + + F L++L L +++++ ++ L L+ L + N +LA GAF+
Sbjct: 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ-LSKLTRLEELEIG 243
GL L L L ++ + L L+ L + N +QS + S LT LE L++
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 244 QN 245
N
Sbjct: 158 SN 159
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 396 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 455
I D A++ LS L +L+LT N +QS+ S L+ L++L + + LE L L
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 456 KRLEITGASNLTRVRK 471
K L + A NL + K
Sbjct: 127 KELNV--AHNLIQSFK 140
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 53/128 (41%), Gaps = 16/128 (12%)
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR 208
N V PS +L + R GL+ + F G L LDL G+ +S N F
Sbjct: 339 NAFSEVDLPSLEFLDLS---RNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSSN-FL 393
Query: 209 GLSGLRSLVLTDNRLQSIPTKQLSK------LTRLEELEIGQNGFSMLEAGCFKGLSYLK 262
GL L L + L KQ+S+ L L L+I + G F GLS L+
Sbjct: 394 GLEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 263 RLEITGAS 270
L++ G S
Sbjct: 449 VLKMAGNS 456
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 1/139 (0%)
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 438
+ S ++L + L ++ +F L+ L L+ +Q+I L+ L L +
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 439 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDA 498
N L G F GLS L++L + +NL + +
Sbjct: 86 NPIQSLALGAFSGLSSLQKL-VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 499 LVGLPNLYHLNLKENAFTS 517
L NL HL+L N S
Sbjct: 145 FSNLTNLEHLDLSSNKIQS 163
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 62/142 (43%)
Query: 117 RRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 176
+++ F + + ++ A + + +L L+D Q+ + T +F Y + +L +G N
Sbjct: 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106
Query: 177 TLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTR 236
L F + L+ L L L+++ F L +L +++N L+ I T
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166
Query: 237 LEELEIGQNGFSMLEAGCFKGL 258
L+ L++ N + ++ L
Sbjct: 167 LQNLQLSSNRLTHVDLSLIPSL 188
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 85/221 (38%), Gaps = 47/221 (21%)
Query: 46 SIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHT--TWLIIPIGGFEPQEKLVELQLNHN 102
S+Q L LS+NR+ VD S IP SL H ++S+ + L IPI + EL +HN
Sbjct: 166 SLQNLQLSSNRLTHVDLSLIP---SLFHANVSYNLLSTLAIPIA-------VEELDASHN 215
Query: 103 KHFPQQIVCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFI 160
+ + P VE I + D A L + L N+L + F+
Sbjct: 216 S------INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 269
Query: 161 YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTD 220
+ L L + N RL AL+L G + + L+ L L+
Sbjct: 270 KMQRLERLYISNN--------------RLVALNLYG-----------QPIPTLKVLDLSH 304
Query: 221 NRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
N L + Q + RLE L + N L+ L L
Sbjct: 305 NHLLHVERNQ-PQFDRLENLYLDHNSIVTLKLSTHHTLKNL 344
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 399 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 458
+ F+ + L LVL N L S+P +L L + N +E F+ + L+ L
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170
Query: 459 EITGASNLTRV 469
+++ ++ LT V
Sbjct: 171 QLS-SNRLTHV 180
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 107/464 (23%), Positives = 183/464 (39%), Gaps = 65/464 (14%)
Query: 47 IQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKH- 104
+Q L+L ++RI T++ L SL+H+DLS + F P L L L N +
Sbjct: 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
Query: 105 -------FPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP 157
FP + VE F + I RID F GLT+L L + LR+ +
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSE--IRRID---FAGLTSLNELEIKALSLRNYQSQ 166
Query: 158 SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLS------ 211
S + + L + L+ L + + L + L+LR TN++ F L
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD---TNLARFQFSPLPVDEVSS 223
Query: 212 -----GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ---NGFSMLEAGCFKGLSYLKR 263
R VLTD + K L + L E+E NG +S L +
Sbjct: 224 PMKKLAFRGSVLTDESFNEL-LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282
Query: 264 LEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTS 323
+E L + F D +E + +P + +LK F
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT--VENSKVFLVPCSFSQHLKSLEFLD 340
Query: 324 FSESML------------AWPELRTIDIAENPI----ECGCNILWLREML---VRRNTSA 364
SE+++ AWP L+T+ +++N + + G +L L+ + + RNT
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400
Query: 365 VF---CNSPAPLKYKSLISLSAEDLG-CAGAGLT--NISDNAFRGLS----GLRSLVLTD 414
C P +++ +L S + C L ++S+N S L+ L ++
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR 460
Query: 415 NRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 458
N+L+++P L + L ++I +N + G F L+ L+++
Sbjct: 461 NKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRLTSLQKI 502
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 165 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 224
+ L + N T + G L L L+ + + I +AF L L L L+DN L
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 225 SIPTKQLSKLTRLEELEIGQNGFSML-EAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
S+ + L+ L+ L + N + L F L+ L+ L I + +R+ FA
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 83/380 (21%), Positives = 145/380 (38%), Gaps = 43/380 (11%)
Query: 175 FTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 234
FT++ G + +LDL +T I R + L+ L+L +R+ +I L
Sbjct: 17 FTSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73
Query: 235 TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXX 294
LE L++ N S L + F LS LK L + G T F +
Sbjct: 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133
Query: 295 XXXXXIEEGALVGLPNLYHLNLKENAFTSF-SESMLAWPELR--TIDIAENP--IECGCN 349
I GL +L L +K + ++ S+S+ + ++ T+ ++E+ +E +
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193
Query: 350 IL-WLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLR 408
IL +R + +R A F SP P+ +S + L G+ LT D +F L L
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDE---VSSPMKKLAFRGSVLT---DESFNELLKLL 247
Query: 409 SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTR 468
+L +L+ +E + NG +S L ++E L
Sbjct: 248 RYIL--------------ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293
Query: 469 VRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESML----- 523
+ F D +E + +P + +LK F SE+++
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRIT--VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351
Query: 524 -------AWPELRTIDIAEN 536
AWP L+T+ +++N
Sbjct: 352 KNSACKGAWPSLQTLVLSQN 371
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 12/151 (7%)
Query: 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQH---VDLSHTTWLIIPIGGFEPQEKLVELQLNH 101
PS+Q LVLS N ++++ I L+L++ +D+S T+ +P P EK+ L L+
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP-EKMRFLNLSS 419
Query: 102 NKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY 161
++V + I P+ +E+ + + + F L L+ LY+ N+L+++P S
Sbjct: 420 TG---IRVVKTCI-PQTLEVLDVSNNNLDSFSLF--LPRLQELYISRNKLKTLPDASL-- 471
Query: 162 LGMLAELRVGLNVFTTLADGAFNGLGRLSAL 192
+L +++ N ++ DG F+ L L +
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
L L L L NQL+S+P L L L V N T+L GA GLG L L L+G
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
L + L L L +N+L +P L+ L L+ L + +N + G F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L+ LD+ LT++ A RGL L+ L L N L+++P L+ +LE+L + N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
+ L AG GL L L + ++L + KG F
Sbjct: 159 QLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
PL ++L +L+ D+ + LT++ A RGL L+ L L N L+++P L+ +L
Sbjct: 93 PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
E+L + N + L AG GL L L + ++L + KG F
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 6/199 (3%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N+ T + RL+ L+L LT + + L L +L L+ N+LQS+P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
L L L++ N + L G +GL L+ L + G N +
Sbjct: 94 LLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKL 150
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
+ G L GL NL L L+EN+ + + L + NP C
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
Query: 348 CNILWLREMLVRRNTSAVF 366
C IL+ R L + N V+
Sbjct: 211 CEILYFRRWL-QDNAENVY 228
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 70/179 (39%), Gaps = 3/179 (1%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPI-YLSLQHVDLSHTTWLIIPIGGF 88
N + L +P L LS N + T A + Y L ++L + + G
Sbjct: 16 NCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT 75
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
P L L L+HN+ ++ + V NR++ + GL L+ LYL
Sbjct: 76 LP--VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAF 207
N+L+++P L +L + N T L G NGL L L L+ L I F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
L L L L NQL+S+P L L L V N T+L GA GLG L L L+G
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
L + L L L +N+L +P L+ L L+ L + +N + G F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L+ LD+ LT++ A RGL L+ L L N L+++P L+ +LE+L + N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
+ L AG GL L L + ++L + KG F
Sbjct: 159 QLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
PL ++L +L+ D+ + LT++ A RGL L+ L L N L+++P L+ +L
Sbjct: 93 PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
E+L + N + L AG GL L L + ++L + KG F
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 6/199 (3%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N+ T + RL+ L+L LT + + L L +L L+ N+LQS+P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
L L L++ N + L G +GL L+ L + G N +
Sbjct: 94 LLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKL 150
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
+ G L GL NL L L+EN+ + + L + NP C
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
Query: 348 CNILWLREMLVRRNTSAVF 366
C IL+ R L + N V+
Sbjct: 211 CEILYFRRWL-QDNAENVY 228
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 70/179 (39%), Gaps = 3/179 (1%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPI-YLSLQHVDLSHTTWLIIPIGGF 88
N + L +P L LS N + T A + Y L ++L + + G
Sbjct: 16 NCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT 75
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
P L L L+HN+ ++ + V NR++ + GL L+ LYL
Sbjct: 76 LP--VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAF 207
N+L+++P L +L + N T L G NGL L L L+ L I F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
L L L L NQL+S+P L L L V N T+L GA GLG L L L+G
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
L + L L L +N+L +P L+ L L+ L + +N + G F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L+ LD+ LT++ A RGL L+ L L N L+++P L+ +LE+L + N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
+ L AG GL L L + ++L + KG F
Sbjct: 159 QLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
PL ++L +L+ D+ + LT++ A RGL L+ L L N L+++P L+ +L
Sbjct: 93 PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
E+L + N + L AG GL L L + ++L + KG F
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 6/199 (3%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N+ T + RL+ L+L LT + + L L +L L+ N+LQS+P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
L L L++ N + L G +GL L+ L + G N +
Sbjct: 94 LLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKL 150
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
+ G L GL NL L L+EN+ + + L + NP C
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
Query: 348 CNILWLREMLVRRNTSAVF 366
C IL+ R L + N V+
Sbjct: 211 CEILYFRRWL-QDNAENVY 228
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 70/179 (39%), Gaps = 3/179 (1%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPI-YLSLQHVDLSHTTWLIIPIGGF 88
N + L +P L LS N + T A + Y L ++L + + G
Sbjct: 16 NCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT 75
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
P L L L+HN+ ++ + V NR++ + GL L+ LYL
Sbjct: 76 LP--VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAF 207
N+L+++P L +L + N T L G NGL L L L+ L I F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
L L L L NQL+S+P L L L V N T+L GA GLG L L L+G
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
L + L L L +N+L +P L+ L L+ L + +N + G F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L+ LD+ LT++ A RGL L+ L L N L+++P L+ +LE+L + N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
+ L AG GL L L + ++L + KG F
Sbjct: 159 QLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
PL ++L +L+ D+ + LT++ A RGL L+ L L N L+++P L+ +L
Sbjct: 93 PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
E+L + N + L AG GL L L + ++L + KG F
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 6/199 (3%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N+ T + RL+ L+L LT + + L L +L L+ N+LQS+P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
L L L++ N + L G +GL L+ L + G N +
Sbjct: 94 LLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKL 150
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
+ G L GL NL L L+EN+ + + L + NP C
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
Query: 348 CNILWLREMLVRRNTSAVF 366
C IL+ R L + N V+
Sbjct: 211 CEILYFRRWL-QDNAENVY 228
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 70/179 (39%), Gaps = 3/179 (1%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPI-YLSLQHVDLSHTTWLIIPIGGF 88
N + L +P L LS N + T A + Y L ++L + + G
Sbjct: 16 NCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT 75
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
P L L L+HN+ ++ + V NR++ + GL L+ LYL
Sbjct: 76 LP--VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAF 207
N+L+++P L +L + N T L G NGL L L L+ L I F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L+ LD+ LT++ A RGL L+ L L N L+++P L+ +LE+L + N
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 159
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
+ L AG GL L L + ++L + KG F
Sbjct: 160 NLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 194
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
L L L L NQL+S+P L L L V N T+L GA GLG L L L+G
Sbjct: 77 LPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 135
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
L + L L L +N L +P L+ L L+ L + +N + G F
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
PL ++L +L+ D+ + LT++ A RGL L+ L L N L+++P L+ +L
Sbjct: 94 PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 151
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
E+L + N + L AG GL L L + ++L + KG F
Sbjct: 152 EKLSLANNNLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 194
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 6/199 (3%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N+ T + RL+ L+L LT + + L L +L L+ N+LQS+P
Sbjct: 37 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 94
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
L L L++ N + L G +GL L+ L + G N +
Sbjct: 95 LLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKL 151
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
+ G L GL NL L L+EN+ + + L + NP C
Sbjct: 152 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 211
Query: 348 CNILWLREMLVRRNTSAVF 366
C IL+ R L + N V+
Sbjct: 212 CEILYFRRWL-QDNAENVY 229
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 136 EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
+ L AL +L + N+L S+P + LG L EL + N TL G +L L L
Sbjct: 98 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 157
Query: 196 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
LT + GL L +L+L +N L +IP
Sbjct: 158 NNNLTELPAGLLNGLENLDTLLLQENSLYTIP 189
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 27/159 (16%)
Query: 402 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
+ L L L ++ NRL S+P L L L+EL + N L G L++L +
Sbjct: 98 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 157
Query: 462 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSES 521
+NLT + G L GL NL L L+EN+ + +
Sbjct: 158 N-NNLTELPAGL-------------------------LNGLENLDTLLLQENSLYTIPKG 191
Query: 522 MLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF 560
L + NP C C IL+ R L + N V+
Sbjct: 192 FFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAENVY 229
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L+ LD+ LT++ A RGL L+ L L N L+++P L+ +LE+L + N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
+ L AG GL L L + ++L + KG F
Sbjct: 159 NLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
L L L L NQL+S+P L L L V N T+L GA GLG L L L+G
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
L + L L L +N L +P L+ L L+ L + +N + G F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
PL ++L +L+ D+ + LT++ A RGL L+ L L N L+++P L+ +L
Sbjct: 93 PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
E+L + N + L AG GL L L + ++L + KG F
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 6/199 (3%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N+ T + RL+ L+L LT + + L L +L L+ N+LQS+P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
L L L++ N + L G +GL L+ L + G N +
Sbjct: 94 LLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKL 150
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
+ G L GL NL L L+EN+ + + L + NP C
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
Query: 348 CNILWLREMLVRRNTSAVF 366
C IL+ R L + N V+
Sbjct: 211 CEILYFRRWL-QDNAENVY 228
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 136 EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
+ L AL +L + N+L S+P + LG L EL + N TL G +L L L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 196 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
LT + GL L +L+L +N L +IP
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 3/179 (1%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPI-YLSLQHVDLSHTTWLIIPIGGF 88
N + +L +P L LS N + T A + Y L ++L + + G
Sbjct: 16 NCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT 75
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
P L L L+HN+ ++ + V NR++ + GL L+ LYL
Sbjct: 76 LP--VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAF 207
N+L+++P L +L + N T L G NGL L L L+ L I F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 27/159 (16%)
Query: 402 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
+ L L L ++ NRL S+P L L L+EL + N L G L++L +
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 462 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSES 521
+NLT + G L GL NL L L+EN+ + +
Sbjct: 157 N-NNLTELPAGL-------------------------LNGLENLDTLLLQENSLYTIPKG 190
Query: 522 MLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF 560
L + NP C C IL+ R L + N V+
Sbjct: 191 FFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAENVY 228
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L+ LD+ LT++ A RGL L+ L L N L+++P L+ +LE+L + N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
+ L AG GL L L + ++L + KG F
Sbjct: 159 NLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
L L L L NQL+S+P L L L V N T+L GA GLG L L L+G
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
L + L L L +N L +P L+ L L+ L + +N + G F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 6/199 (3%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N+ T + RL+ L+L A LT + + L L +L L+ N+LQS+P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
L L L++ N + L G +GL L+ L + G N +
Sbjct: 94 LLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKL 150
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
+ G L GL NL L L+EN+ + + L + NP C
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
Query: 348 CNILWLREMLVRRNTSAVF 366
C IL+ R L + N V+
Sbjct: 211 CEILYFRRWL-QDNAENVY 228
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
PL ++L +L+ D+ + LT++ A RGL L+ L L N L+++P L+ +L
Sbjct: 93 PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
E+L + N + L AG GL L L + ++L + KG F
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 136 EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
+ L AL +L + N+L S+P + LG L EL + N TL G +L L L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 196 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
LT + GL L +L+L +N L +IP
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 27/159 (16%)
Query: 402 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
+ L L L ++ NRL S+P L L L+EL + N L G L++L +
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 462 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSES 521
+NLT + G L GL NL L L+EN+ + +
Sbjct: 157 N-NNLTELPAGL-------------------------LNGLENLDTLLLQENSLYTIPKG 190
Query: 522 MLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF 560
L + NP C C IL+ R L + N V+
Sbjct: 191 FFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAENVY 228
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 107/464 (23%), Positives = 182/464 (39%), Gaps = 65/464 (14%)
Query: 47 IQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKH- 104
+Q L+L ++RI T++ L SL+H+DLS + F P L L L N +
Sbjct: 78 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
Query: 105 -------FPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP 157
FP + VE F + I RID F GLT+L L + LR+ +
Sbjct: 138 TLGVTSLFPNLTNLQTLRIGNVETFSE--IRRID---FAGLTSLNELEIKALSLRNYQSQ 192
Query: 158 SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLS------ 211
S + + L + L+ L + + L + L+LR TN++ F L
Sbjct: 193 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD---TNLARFQFSPLPVDEVSS 249
Query: 212 -----GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ---NGFSMLEAGCFKGLSYLKR 263
R VLTD + K L + L E+E NG +S L +
Sbjct: 250 PMKKLAFRGSVLTDESFNEL-LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 308
Query: 264 LEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTS 323
+E L + F D +E + +P + +LK F
Sbjct: 309 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT--VENSKVFLVPCSFSQHLKSLEFLD 366
Query: 324 FSESML------------AWPELRTIDIAENPI----ECGCNILWLREML---VRRNTSA 364
SE+++ AWP L+T+ +++N + + G +L L+ + + RNT
Sbjct: 367 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 426
Query: 365 VF---CNSPAPLKYKSLISLSAEDLG-CAGAGLT--NISDNAFRGLS----GLRSLVLTD 414
C P +++ +L S + C L ++S+N S L+ L ++
Sbjct: 427 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR 486
Query: 415 NRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 458
N+L+++P L + L ++I N + G F L+ L+++
Sbjct: 487 NKLKTLPDASLFPV--LLVMKIASNQLKSVPDGIFDRLTSLQKI 528
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 165 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 224
+ L + N T + G L L L+ + + I +AF L L L L+DN L
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 225 SIPTKQLSKLTRLEELEIGQNGFSML-EAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
S+ + L+ L+ L + N + L F L+ L+ L I + +R+ FA
Sbjct: 114 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 171
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 83/380 (21%), Positives = 145/380 (38%), Gaps = 43/380 (11%)
Query: 175 FTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 234
FT++ G + +LDL +T I R + L+ L+L +R+ +I L
Sbjct: 43 FTSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 99
Query: 235 TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXX 294
LE L++ N S L + F LS LK L + G T F +
Sbjct: 100 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 159
Query: 295 XXXXXIEEGALVGLPNLYHLNLKENAFTSF-SESMLAWPELR--TIDIAENP--IECGCN 349
I GL +L L +K + ++ S+S+ + ++ T+ ++E+ +E +
Sbjct: 160 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 219
Query: 350 IL-WLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLR 408
IL +R + +R A F SP P+ +S + L G+ LT D +F L L
Sbjct: 220 ILSSVRYLELRDTNLARFQFSPLPVDE---VSSPMKKLAFRGSVLT---DESFNELLKLL 273
Query: 409 SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTR 468
+L +L+ +E + NG +S L ++E L
Sbjct: 274 RYIL--------------ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 319
Query: 469 VRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESML----- 523
+ F D +E + +P + +LK F SE+++
Sbjct: 320 PQFYLFYDLSTVYSLLEKVKRIT--VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 377
Query: 524 -------AWPELRTIDIAEN 536
AWP L+T+ +++N
Sbjct: 378 KNSACKGAWPSLQTLVLSQN 397
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQH---VDLSHTTWLIIPIGGFEPQEKLVELQLNH 101
PS+Q LVLS N ++++ I L+L++ +D+S T+ +P P EK+ L L+
Sbjct: 387 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP-EKMRFLNLSS 445
Query: 102 NKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY 161
++V + I P+ +E+ + + + F L L+ LY+ N+L+++P S
Sbjct: 446 TG---IRVVKTCI-PQTLEVLDVSNNNLDSFSLF--LPRLQELYISRNKLKTLPDASL-- 497
Query: 162 LGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
+L +++ N ++ DG F+ L L + L
Sbjct: 498 FPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWLH 531
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L+ LD+ LT++ A RGL L+ L L N L+++P L+ +LE+L + N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
+ L AG GL L L + ++L + KG F
Sbjct: 159 NLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
L L L L NQL+S+P L L L V N T+L GA GLG L L L+G
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
L + L L L +N L +P L+ L L+ L + +N + G F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 6/199 (3%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N+ T + RL+ L+L A LT + + L L +L L+ N+LQS+P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
L L L++ N + L G +GL L+ L + G N +
Sbjct: 94 LLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKL 150
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
+ G L GL NL L L+EN+ + + L + NP C
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
Query: 348 CNILWLREMLVRRNTSAVF 366
C IL+ R L + N V+
Sbjct: 211 CEILYFRRWL-QDNAENVY 228
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
PL ++L +L+ D+ + LT++ A RGL L+ L L N L+++P L+ +L
Sbjct: 93 PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
E+L + N + L AG GL L L + ++L + KG F
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 136 EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
+ L AL +L + N+L S+P + LG L EL + N TL G +L L L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 196 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
LT + GL L +L+L +N L +IP
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 27/159 (16%)
Query: 402 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
+ L L L ++ NRL S+P L L L+EL + N L G L++L +
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 462 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSES 521
+NLT + G L GL NL L L+EN+ + +
Sbjct: 157 N-NNLTELPAGL-------------------------LNGLENLDTLLLQENSLYTIPKG 190
Query: 522 MLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF 560
L + NP C C IL+ R L + N V+
Sbjct: 191 FFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAENVY 228
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 62/142 (43%)
Query: 117 RRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 176
+++ F + + ++ A + + +L L+D Q+ + T +F Y + +L +G N
Sbjct: 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112
Query: 177 TLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTR 236
L F + L+ L L L+++ F L +L +++N L+ I T
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172
Query: 237 LEELEIGQNGFSMLEAGCFKGL 258
L+ L++ N + ++ L
Sbjct: 173 LQNLQLSSNRLTHVDLSLIPSL 194
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 90/226 (39%), Gaps = 57/226 (25%)
Query: 46 SIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHT--TWLIIPIGGFEPQEKLVELQLNHN 102
S+Q L LS+NR+ VD S IP SL H ++S+ + L IPI + EL +HN
Sbjct: 172 SLQNLQLSSNRLTHVDLSLIP---SLFHANVSYNLLSTLAIPIA-------VEELDASHN 221
Query: 103 KHFPQQIVCSIISPRRVEI----FGQNRISRIDQAC---FEGLTALRILYLDDNQLRSVP 155
+ + P VE+ N ++ D A + GL + + Y N+L +
Sbjct: 222 S------INVVRGPVNVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSY---NELEKIM 270
Query: 156 TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRS 215
F+ + L L + N RL AL+L G + + L+
Sbjct: 271 YHPFVKMQRLERLYISNN--------------RLVALNLYG-----------QPIPTLKV 305
Query: 216 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
L L+ N L + Q + RLE L + N L+ L L
Sbjct: 306 LDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLKLSTHHTLKNL 350
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 399 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 458
+ F+ + L LVL N L S+P +L L + N +E F+ + L+ L
Sbjct: 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176
Query: 459 EITGASNLTRV 469
+++ ++ LT V
Sbjct: 177 QLS-SNRLTHV 186
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L+ LD+ LT++ A RGL L+ L L N L+++P L+ +LE+L + N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
+ L AG GL L L + ++L + KG F
Sbjct: 159 DLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
L L L L NQL+S+P L L L V N T+L GA GLG L L L+G
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
L + L L L +N L +P L+ L L+ L + +N + G F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
LT++ A RGL L+ L L N L+++P L+ +LE+L + N + L AG GL
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGL 171
Query: 453 SYLKRLEITGASNLTRVRKGAFA 475
L L + ++L + KG F
Sbjct: 172 ENLDTL-LLQENSLYTIPKGFFG 193
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 6/199 (3%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N+ T + RL+ L+L LT + + L L +L L+ N+LQS+P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
L L L++ N + L G +GL L+ L + G N +
Sbjct: 94 LLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKL 150
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
+ G L GL NL L L+EN+ + + L + NP C
Sbjct: 151 EKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
Query: 348 CNILWLREMLVRRNTSAVF 366
C IL+ R L + N V+
Sbjct: 211 CEILYFRRWL-QDNAENVY 228
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 136 EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
+ L AL +L + N+L S+P + LG L EL + N TL G +L L L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 196 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
LT + GL L +L+L +N L +IP
Sbjct: 157 NNDLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 3/179 (1%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPI-YLSLQHVDLSHTTWLIIPIGGF 88
N + +L +P L LS N + T A + Y L ++L + + G
Sbjct: 16 NCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT 75
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
P L L L+HN+ ++ + V NR++ + GL L+ LYL
Sbjct: 76 LP--VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAF 207
N+L+++P L +L + N T L G NGL L L L+ L I F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 165 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 224
+ EL + N FT L + L+ +DL ++ +S+ +F ++ L +L+L+ NRL+
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 225 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 272
IP + L L L + N S++ G F LS L L I GA+ L
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI-GANPL 138
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
++ +S+ +F ++ L +L+L+ NRL+ IP + L L L + N S++ G F L
Sbjct: 66 ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL 125
Query: 453 SYLKRLEITGASNL 466
S L L I GA+ L
Sbjct: 126 SALSHLAI-GANPL 138
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 181
NRIS + F +T L L L N+LR +P +F L L L + N + + +G
Sbjct: 61 LSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG 120
Query: 182 AFNGLGRLSAL 192
AFN L LS L
Sbjct: 121 AFNDLSALSHL 131
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 23/155 (14%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHT 78
P+ + D L V+P + L L N+ V + Y L +DLS+
Sbjct: 5 PTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN 64
Query: 79 TWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGL 138
+ F +L+ L L++N+ + C I PR F+GL
Sbjct: 65 RISTLSNQSFSNMTQLLTLILSYNR-----LRC--IPPRT----------------FDGL 101
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 173
+LR+L L N + VP +F L L+ L +G N
Sbjct: 102 KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 402 RGLSGLRSLVLTD---NRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 458
+ LS + L L D NR+ ++ + S +T+L L + N + F GL L+ L
Sbjct: 48 KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107
Query: 459 EITGASNLTRVRKGAFAD 476
+ G ++++ V +GAF D
Sbjct: 108 SLHG-NDISVVPEGAFND 124
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L+ LD+ LT++ A RGL L+ L L N L+++P L+ +LE+L + N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
+ L AG GL L L + ++L + KG F
Sbjct: 159 NLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
L L L L NQL+S+P L L L V N T+L GA GLG L L L+G
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
L + L L L +N L +P L+ L L+ L + +N + G F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 6/199 (3%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N+ T + RL+ L+L A LT + + L L +L L+ N+LQS+P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
L L L++ N + L G +GL L+ L + G N +
Sbjct: 94 LLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKL 150
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
+ G L GL NL L L+EN+ + + L + NP C
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
Query: 348 CNILWLREMLVRRNTSAVF 366
C IL+ R L + N V+
Sbjct: 211 CEILYFRRWL-QDNAENVY 228
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
PL ++L +L+ D+ + LT++ A RGL L+ L L N L+++P L+ +L
Sbjct: 93 PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
E+L + N + L AG GL L L + ++L + KG F
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 136 EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
+ L AL +L + N+L S+P + LG L EL + N TL G +L L L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 196 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
LT + GL L +L+L +N L +IP
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 27/159 (16%)
Query: 402 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
+ L L L ++ NRL S+P L L L+EL + N L G L++L +
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 462 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSES 521
+NLT + G L GL NL L L+EN+ + +
Sbjct: 157 N-NNLTELPAGL-------------------------LNGLENLDTLLLQENSLYTIPKG 190
Query: 522 MLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF 560
L + NP C C IL+ R L + N V+
Sbjct: 191 FFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAENVY 228
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 141/359 (39%), Gaps = 22/359 (6%)
Query: 46 SIQRLVLSTNRIKTVDSA-IPIYLSLQHVDLSHTTWLIIPIG--GFEPQEKLVELQLNHN 102
S++ L L +R + S + LQ +DL+ T +P G G +KLV L +NH
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLV-LSVNHF 310
Query: 103 KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY- 161
Q + S + I G + + C E L L+ L L N + + S
Sbjct: 311 DQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLK 370
Query: 162 -LGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL-TNISDNAFRGLSGLRSLVLT 219
L L L + N L AF +L LDL L N + F+ L L+ L LT
Sbjct: 371 NLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLT 430
Query: 220 DNRLQSIPTKQLSKLTRLEELEIGQNGF---SMLEAGCFKGLSYLKRLEITGASNLTRVR 276
L + L+ L L L + N F ++ + + + L+ L I + L +
Sbjct: 431 YCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVL-ILSSCGLLSID 489
Query: 277 KGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLA-WPELR 335
+ AF + +L L +Y LNL N+ S +L +
Sbjct: 490 QQAFHSLGKMSHVDLSHNSLTCDSID-SLSHLKGIY-LNLAANSINIISPRLLPILSQQS 547
Query: 336 TIDIAENPIECGCN----ILWLREMLVR-RNTSAVFCNSPAPLKYKSLISLSAEDLGCA 389
TI+++ NP++C C+ + W +E L + + C +P L+ + LS L C
Sbjct: 548 TINLSHNPLDCTCSNIHFLTWYKENLHKLEGSEETTCANPPSLRG---VKLSDVKLSCG 603
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 98/442 (22%), Positives = 158/442 (35%), Gaps = 54/442 (12%)
Query: 116 PRRVEI--FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 173
P E F N + I F L L L L Q+ + +F L+ L + N
Sbjct: 29 PNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGN 88
Query: 174 VFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI------P 227
+A+ + NG L L L G++N+ L L SL L N + SI P
Sbjct: 89 PLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFP 148
Query: 228 TKQLSKLT---------------RLEE-----LEIGQNGFSMLEAGCFKGLSYLKRLEIT 267
+ L L LE+ L N +E G F + + L
Sbjct: 149 ARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAFDS-TIFQSLNFG 207
Query: 268 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLY--HLNLKENAFTSFS 325
G NL+ + G I L GL + LNL+E+ F+ S
Sbjct: 208 GTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDIS 267
Query: 326 ESML-AWPELRTIDIAENPIEC------GCNILWLREMLVRRNTSAVFCNSPAPLKYKSL 378
+ + +L+ +D+ ++ G N+L +++++ N C A + SL
Sbjct: 268 STTFQCFTQLQELDLTATHLKGLPSGMKGLNLL--KKLVLSVNHFDQLCQISAA-NFPSL 324
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQS--IPTKQLSKLTRLEELEI 436
L ++ L L++L L+ N +++ + QL L+ L+ L +
Sbjct: 325 THLYIR----GNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNL 380
Query: 437 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIE- 495
N L++ FK L+ L++ TR+ A ++
Sbjct: 381 SHNEPLGLQSQAFKECPQLELLDLA----FTRLHINAPQSPFQNLHFLQVLNLTYCFLDT 436
Query: 496 --EDALVGLPNLYHLNLKENAF 515
+ L GLP L HLNLK N F
Sbjct: 437 SNQHLLAGLPVLRHLNLKGNHF 458
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 121/558 (21%), Positives = 216/558 (38%), Gaps = 104/558 (18%)
Query: 34 ANLDVIPSHSNPSIQRLVLSTNRIKTVD--SAIPIYLSLQHVDLSHTTWLIIPIGGFEPQ 91
+NL+ IP H+ +++ L L +N I ++ P +L+ +D + I
Sbjct: 115 SNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPAR-NLKVLDFQNNAIHYISREDMRSL 173
Query: 92 EKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQL 151
E+ + L LN N + + + +E+ G + F G L +++ N L
Sbjct: 174 EQAINLSLNFNGN----------NVKGIEL-GAFDSTIFQSLNFGGTPNLSVIF---NGL 219
Query: 152 RSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS--ALDLRGAGLTNISDNAFRG 209
++ T S ++LG ++ ++ GL +S +L+L+ ++IS F+
Sbjct: 220 QNSTTQS-LWLGTFEDIDD-----EDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQC 273
Query: 210 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 269
+ L+ L LT L+ +P+ + L L++L + N F L L L I G
Sbjct: 274 FTQLQELDLTATHLKGLPSG-MKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRG- 331
Query: 270 SNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKEN---AFTSFSE 326
N+ ++ G G L L NL L+L N A S
Sbjct: 332 -NVKKLHLGV-----------------------GCLEKLGNLQTLDLSHNDIEASDCCSL 367
Query: 327 SMLAWPELRTIDIAEN-PIECG------CNILWLREMLVRRNTSAVFCNSPAPLKYKSLI 379
+ L+T++++ N P+ C L L ++ R + N+P +++L
Sbjct: 368 QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR----LHINAPQS-PFQNLH 422
Query: 380 SLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQS---IPTKQLSKLTRLEELEI 436
L +L +N + GL LR L L N Q T L + LE L +
Sbjct: 423 FLQVLNLTYCFLDTSN--QHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLIL 480
Query: 437 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEE 496
G ++ F L + ++++ S LT D
Sbjct: 481 SSCGLLSIDQQAFHSLGKMSHVDLSHNS-LT-------CDSI------------------ 514
Query: 497 DALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCN----ILWLREML 551
D+L L +Y LNL N+ S +L + TI+++ NP++C C+ + W +E L
Sbjct: 515 DSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSNIHFLTWYKENL 573
Query: 552 VR-RNTSAVFCNSPAPLK 568
+ + C +P L+
Sbjct: 574 HKLEGSEETTCANPPSLR 591
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
+ + N L +F+ L LDL + I D A+ GL L +L+LT N +QS
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
S LT LE L + + LE+ L LK+L +
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR 208
N L+ + + SF L L + T+ D A++GL LS L L G + + S +F
Sbjct: 42 NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101
Query: 209 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
GL+ L +LV + +L S+ + + +L L++L + N
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 2/138 (1%)
Query: 130 IDQACFEGLTALRILYLDDNQLRSVPTPS-FIYLGMLAELRVGLNVFTTLADGAFNGLGR 188
I A F GL L+ L + L+ V S F+ L L L + DG F GL
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449
Query: 189 LSALDLRGAGLT-NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
L+ L + G N N F + L L L+ +L+ I L RL+ L + N
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
Query: 248 SMLEAGCFKGLSYLKRLE 265
L++ + L L L+
Sbjct: 510 LFLDSSHYNQLYSLSTLD 527
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 396 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 455
I D A+ GL L +L+LT N +QS S LT LE L + + LE+ L L
Sbjct: 71 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130
Query: 456 KRLEI 460
K+L +
Sbjct: 131 KKLNV 135
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
+ + N L +F+ L LDL + I D A+ GL L +L+LT N +QS
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
S LT LE L + + LE+ L LK+L +
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 130
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR 208
N L+ + + SF L L + T+ D A++GL LS L L G + + S +F
Sbjct: 37 NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 96
Query: 209 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
GL+ L +LV + +L S+ + + +L L++L + N
Sbjct: 97 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 2/138 (1%)
Query: 130 IDQACFEGLTALRILYLDDNQLRSVPTPS-FIYLGMLAELRVGLNVFTTLADGAFNGLGR 188
I A F GL L+ L + L+ V S F+ L L L + DG F GL
Sbjct: 385 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 444
Query: 189 LSALDLRGAGLT-NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
L+ L + G N N F + L L L+ +L+ I L RL+ L + N
Sbjct: 445 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 504
Query: 248 SMLEAGCFKGLSYLKRLE 265
L++ + L L L+
Sbjct: 505 LFLDSSHYNQLYSLSTLD 522
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 396 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 455
I D A+ GL L +L+LT N +QS S LT LE L + + LE+ L L
Sbjct: 66 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 125
Query: 456 KRLEI 460
K+L +
Sbjct: 126 KKLNV 130
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 113 IISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 172
I + +V NRI++++ F+ LT L L LD+NQL +P F L L +L +
Sbjct: 28 IPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87
Query: 173 NVFTTLADGAFNGLGRLSAL 192
N ++ GAF+ L L+ +
Sbjct: 88 NQLKSIPRGAFDNLRSLTHI 107
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 151 LRSVPT--PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR 208
L SVPT P+ + L + R+ T L G F+ L +L+ LDL LT + F
Sbjct: 21 LASVPTGIPTTTQVLYLYDNRI-----TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75
Query: 209 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
L+ L L L DN+L+SIP L L + + N + + C L YL R
Sbjct: 76 KLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPW---DCACSDIL-YLSR 126
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 377 SLISLSAEDLGCAGAGLTNISDNAFRGL-SGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 435
S S S + C+G L ++ G+ + + L L DNR+ + +LT+L L+
Sbjct: 5 SQCSCSGTTVDCSGKSLASVP----TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLD 60
Query: 436 IGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF 474
+ N ++L AG F L+ L +L + + L + +GAF
Sbjct: 61 LDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAF 98
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
T ++LYL DN++ + F L L L + N T L G F+ L +L+ L L
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 199 LTNISDNAFRGLSGLRSLVLTDN 221
L +I AF L L + L +N
Sbjct: 90 LKSIPRGAFDNLRSLTHIWLLNN 112
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 216 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV 275
L L DNR+ + +LT+L L++ N ++L AG F L+ L +L + + L +
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSI 93
Query: 276 RKGAF 280
+GAF
Sbjct: 94 PRGAF 98
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
+T + F L+ L L L +N+L +P KLT+L +L + N + G F L
Sbjct: 42 ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 101
Query: 259 SYLKRLEI 266
L + +
Sbjct: 102 RSLTHIWL 109
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+T + F L+ L L L +N+L +P KLT+L +L + N + G F L
Sbjct: 42 ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 101
Query: 453 SYLKRLEI 460
L + +
Sbjct: 102 RSLTHIWL 109
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLS-LQHVDLSH 77
PS+ S + + +L +P+ + Q L L NRI ++ + L+ L +DL +
Sbjct: 4 PSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDN 63
Query: 78 TTWLIIPIGGFEPQEKLVELQLNHNK 103
++P G F+ +L +L LN N+
Sbjct: 64 NQLTVLPAGVFDKLTQLTQLSLNDNQ 89
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N+I++++ F+ L L+ LY + N+L ++PT F L L +L + N ++ GAF+
Sbjct: 43 NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD 102
Query: 185 GLGRLSALDL 194
L L+ + L
Sbjct: 103 NLKSLTHIYL 112
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
L+L++NQ+ + F +L L +L N T + G F+ L +L+ LDL L +I
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 204 DNAFRGLSGLRSLVLTDN 221
AF L L + L +N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
+T + F L L+ L N+L +IPT KLT+L +L++ N + G F L
Sbjct: 45 ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL 104
Query: 259 SYLKRL 264
L +
Sbjct: 105 KSLTHI 110
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+T + F L L+ L N+L +IPT KLT+L +L++ N + G F L
Sbjct: 45 ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL 104
Query: 453 SYLKRL 458
L +
Sbjct: 105 KSLTHI 110
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 30/73 (41%)
Query: 173 NVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 232
N T L G F+ L L L LT I F L+ L L L DN L+SIP
Sbjct: 43 NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD 102
Query: 233 KLTRLEELEIGQN 245
L L + + N
Sbjct: 103 NLKSLTHIYLYNN 115
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSH 77
PS+ S N Q L +P+ QRL L+ N+I ++ + +L +LQ + +
Sbjct: 7 PSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS 66
Query: 78 TTWLIIPIGGFEPQEKLVELQLNHN 102
IP G F+ +L +L LN N
Sbjct: 67 NKLTAIPTGVFDKLTQLTQLDLNDN 91
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 168
F N+++ I F+ LT L L L+DN L+S+P +F L L +
Sbjct: 64 FNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 113 IISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 172
I + +V N+I++++ F+ LT L L LD+NQL +P F L L +L +
Sbjct: 28 IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87
Query: 173 NVFTTLADGAFNGLGRLSAL 192
N ++ GAF+ L L+ +
Sbjct: 88 NQLKSIPRGAFDNLKSLTHI 107
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
T ++LYL DNQ+ + F L L L + N T L G F+ L +L+ L L
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 199 LTNISDNAFRGLSGLRSLVLTDN 221
L +I AF L L + L +N
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 377 SLISLSAEDLGCAGAGLTNISDNAFRGL-SGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 435
S S S + C+G L ++ G+ + + L L DN++ + +LT+L L+
Sbjct: 5 SQCSCSGTTVDCSGKSLASVP----TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLD 60
Query: 436 IGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF 474
+ N ++L AG F L+ L +L + + L + +GAF
Sbjct: 61 LDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAF 98
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 216 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV 275
L L DN++ + +LT+L L++ N ++L AG F L+ L +L + + L +
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSI 93
Query: 276 RKGAF 280
+GAF
Sbjct: 94 PRGAF 98
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
+T + F L+ L L L +N+L +P KLT+L +L + N + G F L
Sbjct: 42 ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 101
Query: 259 SYLKRL 264
L +
Sbjct: 102 KSLTHI 107
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+T + F L+ L L L +N+L +P KLT+L +L + N + G F L
Sbjct: 42 ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 101
Query: 453 SYLKRL 458
L +
Sbjct: 102 KSLTHI 107
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLS-LQHVDLSH 77
PS+ S + + +L +P+ + Q L L N+I ++ + L+ L +DL +
Sbjct: 4 PSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN 63
Query: 78 TTWLIIPIGGFEPQEKLVELQLNHNK 103
++P G F+ +L +L LN N+
Sbjct: 64 NQLTVLPAGVFDKLTQLTQLSLNDNQ 89
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 113 IISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 172
I + +V N+I++++ F+ LT L L LD+NQL +P F L L +L +
Sbjct: 36 IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 95
Query: 173 NVFTTLADGAFNGLGRLSAL 192
N ++ GAF+ L L+ +
Sbjct: 96 NQLKSIPRGAFDNLKSLTHI 115
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
T ++LYL DNQ+ + F L L L + N T L G F+ L +L+ L L
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 199 LTNISDNAFRGLSGLRSLVLTDN 221
L +I AF L L + L +N
Sbjct: 98 LKSIPRGAFDNLKSLTHIWLLNN 120
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 173 NVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 232
N T L G F+ L +L+ LDL LT + F L+ L L L DN+L+SIP
Sbjct: 48 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 107
Query: 233 KLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
L L + + N + + C L YL R
Sbjct: 108 NLKSLTHIWLLNNPW---DCACSDIL-YLSR 134
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 377 SLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 436
S S S + C+G L ++ + + L L DN++ + +LT+L L++
Sbjct: 13 SQCSCSGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDL 69
Query: 437 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF 474
N ++L AG F L+ L +L + + L + +GAF
Sbjct: 70 DNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAF 106
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 216 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV 275
L L DN++ + +LT+L L++ N ++L AG F L+ L +L + + L +
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSI 101
Query: 276 RKGAF 280
+GAF
Sbjct: 102 PRGAF 106
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
+T + F L+ L L L +N+L +P KLT+L +L + N + G F L
Sbjct: 50 ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 109
Query: 259 SYLKRL 264
L +
Sbjct: 110 KSLTHI 115
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+T + F L+ L L L +N+L +P KLT+L +L + N + G F L
Sbjct: 50 ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 109
Query: 453 SYLKRL 458
L +
Sbjct: 110 KSLTHI 115
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLS-LQHVDLSH 77
PS+ S + + +L +P+ + Q L L N+I ++ + L+ L +DL +
Sbjct: 12 PSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN 71
Query: 78 TTWLIIPIGGFEPQEKLVELQLNHNK 103
++P G F+ +L +L LN N+
Sbjct: 72 NQLTVLPAGVFDKLTQLTQLSLNDNQ 97
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 23/195 (11%)
Query: 85 IGGFEPQEKLVELQLNHN-KHFPQ------QIVC-SIISPRRVEIFGQNRISRIDQACFE 136
+ GF PQ + E+ N N K+F ++C S ISP F N ++ FE
Sbjct: 287 VFGF-PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT---DTVFE 342
Query: 137 G---LTALRILYLDDNQLRSVPTPSFIYLGM--LAELRVGLN-VFTTLADGAFNGLGRLS 190
LT L L L NQL+ + + + M L +L + N V G + L
Sbjct: 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402
Query: 191 ALDLRGAGLTNISDNAFRGLSG-LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 249
+L++ LT D FR L ++ L L N+++SIP KQ+ KL L+EL + N
Sbjct: 403 SLNMSSNILT---DTIFRCLPPRIKVLDLHSNKIKSIP-KQVVKLEALQELNVASNQLKS 458
Query: 250 LEAGCFKGLSYLKRL 264
+ G F L+ L+++
Sbjct: 459 VPDGIFDRLTSLQKI 473
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 396 ISDNAFRGLSG-LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 454
++D FR L ++ L L N+++SIP KQ+ KL L+EL + N + G F L+
Sbjct: 411 LTDTIFRCLPPRIKVLDLHSNKIKSIP-KQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469
Query: 455 LKRL 458
L+++
Sbjct: 470 LQKI 473
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 178 LADGAFNGLG-RLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTR 236
L D F L R+ LDL + +I + L L+ L + N+L+S+P +LT
Sbjct: 411 LTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLTS 469
Query: 237 LEELEIGQNGFSMLEAGCFKGLSYLKR 263
L+++ + N + + C + + YL R
Sbjct: 470 LQKIWLHTNPW---DCSCPR-IDYLSR 492
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 81/207 (39%), Gaps = 40/207 (19%)
Query: 175 FTTLADGAFNGLGRLSA------------LDLRGAGLTNISDNAFRGLSGLRSLVLTDNR 222
+T L D + N L RL A L L L IS AF + LR L L+ N
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99
Query: 223 LQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD 282
L ++ S L LE L + N +++ F+ ++ L++L ++ + ++R
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS-QNQISRF------- 151
Query: 283 XXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFS----ESMLAWPELRTID 338
I++G LP L L+L N + + AW + +
Sbjct: 152 -------------PVELIKDGN--KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK-NGLY 195
Query: 339 IAENPIECGCNILWLREMLVRRNTSAV 365
+ NP+EC C + L R S+V
Sbjct: 196 LHNNPLECDCKLYQLFSHWQYRQLSSV 222
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 15/199 (7%)
Query: 368 NSPAPL-KYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 426
N P L Y +L+ LS +L A T L+ L SL+L+ N L I ++
Sbjct: 32 NVPQSLPSYTALLDLSHNNLSRLRAEWTPTR------LTNLHSLLLSHNHLNFISSEAFV 85
Query: 427 KLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXX 486
+ L L++ N L+ F L L+ L + +++ V + AF D
Sbjct: 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLS 144
Query: 487 XXXXXXIIEEDALVG--LPNLYHLNLKENAFTSFS----ESMLAWPELRTIDIAENPIEC 540
E G LP L L+L N + + AW + + + NP+EC
Sbjct: 145 QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK-NGLYLHNNPLEC 203
Query: 541 GCNILWLREMLVRRNTSAV 559
C + L R S+V
Sbjct: 204 DCKLYQLFSHWQYRQLSSV 222
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 11/117 (9%)
Query: 41 SHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLN 100
SH+N S R + R+ + S + LSH I F P L L L+
Sbjct: 47 SHNNLSRLRAEWTPTRLTNLHSLL----------LSHNHLNFISSEAFVPVPNLRYLDLS 96
Query: 101 HNK-HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT 156
N H + + S + V + N I +D+ FE + L+ LYL NQ+ P
Sbjct: 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 33/180 (18%)
Query: 395 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 454
NI+ L GL+ T RL IP L+ + L LE+ N + + F L
Sbjct: 113 NITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLEN 171
Query: 455 LKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENA 514
L+ +E G++ L ++ +G F +P L LNL N
Sbjct: 172 LESIEF-GSNKLRQMPRGIFGK-------------------------MPKLKQLNLASNQ 205
Query: 515 FTSFSESML-AWPELRTIDIAENPIECGCNIL-----WLREMLVRRNTSAVFCNSPAPLK 568
S + + L+ I + NP +C C + WL + + SA S P++
Sbjct: 206 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVR 265
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 143 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNI 202
+++ DN ++ L L R T + + LS L+LR A + +
Sbjct: 103 LIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELR-ANIEEM 161
Query: 203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLK 262
+ F L L S+ N+L+ +P K+ +L++L + N + G F L+ L+
Sbjct: 162 PSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQ 221
Query: 263 RL 264
++
Sbjct: 222 KI 223
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 20/154 (12%)
Query: 141 LRILYLDDNQLRSVPTPSFI-------YLGMLAEL-------RVGLNVFTTLADGAFNGL 186
LRI +D Q+R P YLG+++ +G+N+ D +GL
Sbjct: 67 LRIGEVDRVQMRRCMLPGHTPIASILDYLGIVSPTTLIFESDNLGMNITRQHLD-RLHGL 125
Query: 187 GRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG 246
R R LT+I N + L L L N ++ +P+ L LE +E G N
Sbjct: 126 KRFRFTTRR---LTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNK 181
Query: 247 FSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF 280
+ G F + LK+L + ++ L V G F
Sbjct: 182 LRQMPRGIFGKMPKLKQLNL-ASNQLKSVPDGIF 214
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 5/151 (3%)
Query: 113 IISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 172
I+SP + N I + + L L+ +L +P + L+ L +
Sbjct: 97 IVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRA 156
Query: 173 NVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 232
N+ + F+ L L +++ L + F + L+ L L N+L+S+P
Sbjct: 157 NI-EEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFD 215
Query: 233 KLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
+LT L+++ + N + + C + + YL R
Sbjct: 216 RLTSLQKIWLHTNPW---DCSCPR-IDYLSR 242
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
LT+I N + L L L N ++ +P+ L LE +E G N + G F +
Sbjct: 135 LTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKM 193
Query: 453 SYLKRLEITGASNLTRVRKGAF 474
LK+L + ++ L V G F
Sbjct: 194 PKLKQLNL-ASNQLKSVPDGIF 214
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%)
Query: 391 AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK 450
A + + + F L L S+ N+L+ +P K+ +L++L + N + G F
Sbjct: 156 ANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFD 215
Query: 451 GLSYLKRL 458
L+ L+++
Sbjct: 216 RLTSLQKI 223
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N+I++++ F+ LT L L L NQL ++P F L L L + +N ++ G F+
Sbjct: 50 NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFD 109
Query: 185 GLGRLSALDL 194
L L+ + L
Sbjct: 110 NLKSLTHIYL 119
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + +N T L G F+ L +L+ L+L LT + F L+ L L L N+L+SIP
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIP 104
Query: 228 TKQLSKLTRLEELEIGQN 245
L L + + N
Sbjct: 105 MGVFDNLKSLTHIYLFNN 122
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLS-LQHVDLSH 77
PS+ S + N QE +L +P+ + Q L L N+I ++ + L+ L +++L+
Sbjct: 14 PSQCSCSGTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAV 73
Query: 78 TTWLIIPIGGFEPQEKLVELQLNHN--KHFPQQIVCSIISPRRVEIF 122
+P+G F+ KL L L+ N K P + ++ S + +F
Sbjct: 74 NQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLF 120
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 38/83 (45%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
T ++L+L NQ+ + F L L L + +N T L G F+ L +L+ L L
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQ 99
Query: 199 LTNISDNAFRGLSGLRSLVLTDN 221
L +I F L L + L +N
Sbjct: 100 LKSIPMGVFDNLKSLTHIYLFNN 122
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+T + F L+ L L L N+L ++P KLT+L L + N + G F L
Sbjct: 52 ITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNL 111
Query: 453 SYLKRL 458
L +
Sbjct: 112 KSLTHI 117
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 128/579 (22%), Positives = 215/579 (37%), Gaps = 90/579 (15%)
Query: 29 CNLQEANLDVIPSHSNPSIQRLVLSTNR-IKTVDSAIPIYLSLQHVDLSHT---TWLIIP 84
C + + D SH + +VL+ N I ++++ L+H+ L+ T IP
Sbjct: 66 CQINWVHEDTFQSHH--QLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIP 123
Query: 85 IGGFEPQEKLVELQLNH------NKHFPQQIVCSIISPRRVEIFGQN---RISRIDQACF 135
+ E E L L NH ++FP Q + +V F N ISR D
Sbjct: 124 VHNLENLESL-HLGSNHISSINLPENFPTQNL-------KVLDFQNNAIHYISRKDTNSL 175
Query: 136 EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG--LNVFTTLADGAFNGLGRLSALD 193
E T L L + N ++ + +FI + L+ G LN+F F GL +
Sbjct: 176 EQATNLS-LNFNGNDIKGIEPGAFIS-KIFQSLKFGGSLNLFII-----FKGLQNSTLQS 228
Query: 194 LRGAGLTNISDN-----AFRGLSGL--RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG 246
L + D F GL + S+ L +R + + TR++EL++
Sbjct: 229 LWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAH 288
Query: 247 FSMLEAGCFKGLSYLKRLEITGAS--NLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGA 304
+ L +G +G++ LK+L + S L ++ +F
Sbjct: 289 LNGLPSG-IEGMNSLKKLVLNANSFDQLCQINAASF------------------------ 323
Query: 305 LVGLPNLYHLNLKEN--AFTSFSESMLAWPELRTIDIAENPIECG-CNILWLREMLVRRN 361
P+L L +K N + + L+ +D++ + IE C L L+ + R+
Sbjct: 324 ----PSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNL---RH 376
Query: 362 TSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNA----FRGLSGLRSLVLTDNRL 417
+ + PL + L T++ A F+ L LR L L+ L
Sbjct: 377 LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLL 436
Query: 418 QSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT--GASNLTRVRKGAFA 475
+ L+ L L L + N F L + LEI + NL + + AF
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFH 496
Query: 476 DXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESML-AWPELRTIDIA 534
DAL L LY LN+ N +L A + I+++
Sbjct: 497 GLRNVNHLDLSHNSLTGD-SMDALSHLKGLY-LNMASNNIRIIPPHLLPALSQQSIINLS 554
Query: 535 ENPIECGCN----ILWLREMLVR-RNTSAVFCNSPAPLK 568
NP++C C+ I W +E L + ++ C +P L+
Sbjct: 555 HNPLDCTCSNIHFITWYKENLHKLEDSEETTCANPPSLR 593
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L N T+ + F+ L L LDL + + ++ F+ L ++VLT N L +
Sbjct: 37 LEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMA 96
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV 275
L+ L+ L + Q G S LE L L+ L + G+++++ +
Sbjct: 97 ETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHL-GSNHISSI 143
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 102/474 (21%), Positives = 170/474 (35%), Gaps = 52/474 (10%)
Query: 116 PRRVEI--FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 173
P E+ F N + I F L L L L Q+ V +F L + + N
Sbjct: 31 PNTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGN 90
Query: 174 VFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI------P 227
+A+ + G L L L G++N+ L L SL L N + SI P
Sbjct: 91 PLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFP 150
Query: 228 TKQLSKL---------------TRLEE-----LEIGQNGFSMLEAGCFKGLSYLKRLEIT 267
T+ L L LE+ L N +E G F + L+
Sbjct: 151 TQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFNGNDIKGIEPGAFIS-KIFQSLKFG 209
Query: 268 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLY--HLNLKENAFTSFS 325
G+ NL + KG + GL ++ +NL+++ F+ S
Sbjct: 210 GSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLS 269
Query: 326 ESML-AWPELRTIDIAE---NPIECGCNIL-WLREMLVRRNTSAVFCNSPAPLKYKSLIS 380
S + ++ +D+ N + G + L+++++ N+ C A + SL
Sbjct: 270 SSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAA-SFPSL-- 326
Query: 381 LSAEDLGCAGAGLT-NISDNAFRGLSGLRSLVLTDNRLQSIP--TKQLSKLTRLEELEIG 437
DL G ++ L L+ L L+ + +++ QL L L+ L +
Sbjct: 327 ---RDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLS 383
Query: 438 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEED 497
N LE FK L+ L++ + F + +
Sbjct: 384 YNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTS-NQH 442
Query: 498 ALVGLPNLYHLNLKENAFT--SFSESMLAWPELRTIDIAENPIECGCNILWLRE 549
L GL +L HLNL+ N+F S S++ L L+ + E I CN+L + +
Sbjct: 443 LLAGLQDLRHLNLQGNSFQDGSISKTNL----LQMVGSLEILILSSCNLLSIDQ 492
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 112/278 (40%), Gaps = 52/278 (18%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L+ ++ LT+I+ + L+ L +++ +N++ I L+ LT L L + N
Sbjct: 62 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 117
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGAL 305
+ ++ K L+ L RLE++ +D AL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSS---------NTISDI-------------------SAL 147
Query: 306 VGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP---IECGCNILWLREMLVRRNT 362
GL +L LN N T + + L +DI+ N I + L ++ N
Sbjct: 148 SGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 206
Query: 363 SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT 422
+ PL I + ++L G L +I L+ L L L +N++ ++
Sbjct: 207 ISDIT----PLG----ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNL-- 254
Query: 423 KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 460
LS LT+L EL++G N S + GL+ L LE+
Sbjct: 255 APLSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 290
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 38/232 (16%)
Query: 102 NKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY 161
N FP + + I ++ N + QA +G+T L + V Y
Sbjct: 10 NVIFPDPALANAI---KIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQ-----Y 61
Query: 162 LGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN 221
L L L + N T LA L +++ L+L G L N+S A GL +++L LT
Sbjct: 62 LNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTST 117
Query: 222 RLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA--------SNLT 273
++ + L+ L+ L+ L + N + + GL+ L+ L I A +NL+
Sbjct: 118 QITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLS 173
Query: 274 RVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFS 325
++ D + L LPNL ++LK N + S
Sbjct: 174 KLTTLKADDNKIS--------------DISPLASLPNLIEVHLKNNQISDVS 211
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 33/156 (21%)
Query: 93 KLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLR 152
K+ EL+L+ N P + V +I + ++ D GL+ L++LYLD NQ+
Sbjct: 86 KITELELSGN---PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT 142
Query: 153 SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSG 212
++ GL L L + A +++++ LS
Sbjct: 143 NI--------------------------SPLAGLTNLQYLSIGNAQVSDLT--PLANLSK 174
Query: 213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
L +L DN++ I L+ L L E+ + N S
Sbjct: 175 LTTLKADDNKISDI--SPLASLPNLIEVHLKNNQIS 208
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 20/151 (13%)
Query: 371 APLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTR 430
APLK + I+ +L +G L N+S A GL +++L LT ++ + L+ L+
Sbjct: 79 APLKNLTKIT----ELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDV--TPLAGLSN 130
Query: 431 LEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA--SNLTRVRKGAFADXXXXXXXXXXXX 488
L+ L + N + + GL+ L+ L I A S+LT +
Sbjct: 131 LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLAN--------LSKLTTLKA 180
Query: 489 XXXXIIEEDALVGLPNLYHLNLKENAFTSFS 519
I + L LPNL ++LK N + S
Sbjct: 181 DDNKISDISPLASLPNLIEVHLKNNQISDVS 211
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG-FSMLEA 446
C + +T I + R LR VLT +L+ I S LE++EI QN ++EA
Sbjct: 16 CQESKVTEIPSDLPRNAIELR-FVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72
Query: 447 GCFKGLSYLKRLEITGASNLTRVRKGAFAD 476
F L L + I A+NL + AF +
Sbjct: 73 DVFSNLPKLHEIRIEKANNLLYINPEAFQN 102
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 95/240 (39%), Gaps = 35/240 (14%)
Query: 197 AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG-FSMLEAGCF 255
+ +T I + R LR VLT +L+ I S LE++EI QN ++EA F
Sbjct: 19 SKVTEIPSDLPRNAIELR-FVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75
Query: 256 KGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLN 315
L L + I A+NL + AF + I + LP+++ ++
Sbjct: 76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL---------ISNTGIKHLPDVHKIH 126
Query: 316 LKENAFTSFSESMLAWPELRTIDIAENPIECGCN----ILWLREMLVRRNTSAVFCNSPA 371
S + +L + I E G + ILWL + ++ ++ F +
Sbjct: 127 -------SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT-- 177
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
L L+ D L + ++ F G SG L ++ R+ S+P+ L L +L
Sbjct: 178 -----QLDELNLSD----NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 31/143 (21%)
Query: 167 ELRVGLNVFTTLADGAFNGLGRLSALDL--------------------------RGAGLT 200
ELR L + GAF+G G L +++ + L
Sbjct: 34 ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93
Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEE--LEIGQN-GFSMLEAGCFKG 257
I+ AF+ L L+ L++++ ++ +P + K+ L++ L+I N +E F G
Sbjct: 94 YINPEAFQNLPNLQYLLISNTGIKHLP--DVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 258 LSYLKRLEITGASNLTRVRKGAF 280
LS+ + + + + AF
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAF 174
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 147 DDNQLRSVPTPSFIYLGMLAE-LRVGLNVFTTLADGAFNGLGRLSALDLR-GAGLTNISD 204
D+ + ++ SF+ L + L + N + + AFNG +L L+L L + +
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPN 195
Query: 205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 237
+ F G SG L ++ R+ S+P+ L L +L
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
+GL L+ L L+ +RS+P S L L L++ + + L A + L +L LDL
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDL 236
Query: 195 RGAGLTNISDNAFRGLSGLRSLVLTD-NRLQSIPTKQLSKLTRLEELEI 242
RG F G + L+ L+L D + L ++P + +LT+LE+L++
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDL 284
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG-FSMLEA 446
C + +T I + R LR VLT +L+ I S LE++EI QN ++EA
Sbjct: 16 CQESKVTEIPSDLPRNAIELR-FVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72
Query: 447 GCFKGLSYLKRLEITGASNLTRVRKGAFAD 476
F L L + I A+NL + AF +
Sbjct: 73 DVFSNLPKLHEIRIEKANNLLYINPEAFQN 102
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 94/240 (39%), Gaps = 35/240 (14%)
Query: 197 AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG-FSMLEAGCF 255
+ +T I + R LR VLT +L+ I S LE++EI QN ++EA F
Sbjct: 19 SKVTEIPSDLPRNAIELR-FVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75
Query: 256 KGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLN 315
L L + I A+NL + AF + I + LP+++ ++
Sbjct: 76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL---------ISNTGIKHLPDVHKIH 126
Query: 316 LKENAFTSFSESMLAWPELRTIDIAENPIECGCN----ILWLREMLVRRNTSAVFCNSPA 371
S + +L + I E G + ILWL + ++ + F +
Sbjct: 127 -------SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT-- 177
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
L L+ D L + ++ F G SG L ++ R+ S+P+ L L +L
Sbjct: 178 -----QLDELNLSD----NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 97/260 (37%), Gaps = 41/260 (15%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHT 78
PSR S L +P+ S RL L +N++++
Sbjct: 2 PSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS------------------- 42
Query: 79 TWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRID------- 131
+P G F+ +L +L L+ N + CS FG + +D
Sbjct: 43 ----LPHGVFDKLTQLTKLSLSSNG-LSFKGCCS------QSDFGTTSLKYLDLSFNGVI 91
Query: 132 --QACFEGLTALRILYLDDNQLRSVPTPS-FIYLGMLAELRVGLNVFTTLADGAFNGLGR 188
+ F GL L L + L+ + S F+ L L L + +G FNGL
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 189 LSALDLRGAGLT-NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
L L + G N + F L L L L+ +L+ + + L+ L+ L + N F
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 248 SMLEAGCFKGLSYLKRLEIT 267
L+ +K L+ L+ L+ +
Sbjct: 212 FSLDTFPYKCLNSLQVLDYS 231
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLN--VFTTLADGAFNGLGRLSALDLRGAGLTN 201
L L+ N+L+S+P F L L +L + N F + G L LDL G+
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92
Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK------LTRLEELEIGQNGFSMLEAGCF 255
+S N F GL L L + L KQ+S+ L L L+I + G F
Sbjct: 93 MSSN-FLGLEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146
Query: 256 KGLSYLKRLEITGAS 270
GLS L+ L++ G S
Sbjct: 147 NGLSSLEVLKMAGNS 161
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 377 SLISLSAEDLGCAGAGLTNISDNAFRGL-SGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 435
S S S ++ C GLT++ G+ S L L N+LQS+P KLT+L +L
Sbjct: 3 SRCSCSGTEIRCNSKGLTSVP----TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLS 58
Query: 436 IGQNGFSMLEAGCFK----GLSYLKRLEIT 461
+ NG S GC G + LK L+++
Sbjct: 59 LSSNGLSF--KGCCSQSDFGTTSLKYLDLS 86
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 63/173 (36%), Gaps = 35/173 (20%)
Query: 402 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI-GQNGFSMLEAGCFKGLSYLKRLEI 460
G SGLR D L S+ L L EL I Q LE +GL L+
Sbjct: 8 HGSSGLR--CTRDGALDSL--HHLPGAENLTELYIENQQHLQHLELRDLRGLGELR---- 59
Query: 461 TGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSE 520
NLT V+ G + DA P L LNL NA S S
Sbjct: 60 ----NLTIVKSG------------------LRFVAPDAFHFTPRLSRLNLSFNALESLSW 97
Query: 521 SMLAWPELRTIDIAENPIECGCNILWLR----EMLVRRNTSAVFCNSPAPLKY 569
+ L+ + ++ NP+ C C + WL+ E L + C+ PL +
Sbjct: 98 KTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAH 150
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 309 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLR----EMLVRRNTSA 364
P L LNL NA S S + L+ + ++ NP+ C C + WL+ E L
Sbjct: 80 PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQK 139
Query: 365 VFCNSPAPLKY 375
+ C+ PL +
Sbjct: 140 LQCHGQGPLAH 150
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 244
GLG L L + +GL ++ +AF L L L+ N L+S+ K + L+ L+EL +
Sbjct: 54 GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112
Query: 245 NGFSMLEAGCFKGLSYLKRLEITG 268
N C L +L+R E G
Sbjct: 113 NPLH-----CSCALRWLQRWEEEG 131
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 137 GLTALRILYLDDNQ-LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
G L LY+++ Q L+ + LG L L + + +A AF+ RLS L+L
Sbjct: 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88
Query: 196 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
L ++S +GLS L+ LVL+ N L + L L R EE +G
Sbjct: 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC--SCALRWLQRWEEEGLG 133
>pdb|4GT6|A Chain A, Crystal Structure Of A Leucine Rich Cell Surface Protein
(Faepraa2165_01021) From Faecalibacterium Prausnitzii
A2-165 At 1.80 A Resolution
Length = 394
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N ++RI+ F+ L + D+ + S+ T +F L ++ + T L + F
Sbjct: 251 NGVARIETHAFDSCAYLASVKXPDS-VVSIGTGAFXNCPALQDIEFSSRI-TELPESVFA 308
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 241
G L ++D+ G+T I D+AF G L + + + + IP S T L +E
Sbjct: 309 GCISLKSIDIP-EGITQILDDAFAGCEQLERIAIP-SSVTKIPESAFSNCTALNNIE 363
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 73/182 (40%), Gaps = 38/182 (20%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
L L DNQ+ + TP L + EL + N ++ A GL + LDL +T+++
Sbjct: 74 LELKDNQITDL-TP-LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVT 129
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
GLS L+ L L N++ +I L+ LT L+ L IG N + L LS L
Sbjct: 130 --PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNNQVNDLTP--LANLSKLTT 183
Query: 264 LEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTS 323
L R +D L LPNL ++LK+N +
Sbjct: 184 L---------RADDNKISDI-------------------SPLASLPNLIEVHLKDNQISD 215
Query: 324 FS 325
S
Sbjct: 216 VS 217
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Query: 93 KLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLR 152
K+ EL+L+ N P + V +I + ++ D GL+ L++LYLD NQ+
Sbjct: 92 KITELELSGN---PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT 148
Query: 153 SV-PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLS 211
++ P L L+ +N T LA+ L +L+ L +++IS L
Sbjct: 149 NISPLAGLTNLQYLSIGNNQVNDLTPLAN-----LSKLTTLRADDNKISDIS--PLASLP 201
Query: 212 GLRSLVLTDNRLQSI-PTKQLSKL 234
L + L DN++ + P LS L
Sbjct: 202 NLIEVHLKDNQISDVSPLANLSNL 225
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 313 HLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF----C 367
L L N T+ +L A P LRT + NP C C ++ LR L R A + C
Sbjct: 35 ELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRC 94
Query: 368 NSPAPLKYKSLISLSAEDL--GCAGAGLTN 395
+P L+ + L L+ ++L CA L++
Sbjct: 95 VAPPALRGRLLPYLAEDELRAACAPGPLSS 124
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 507 HLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF----C 561
L L N T+ +L A P LRT + NP C C ++ LR L R A + C
Sbjct: 35 ELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRC 94
Query: 562 NSPAPLKYKSLISLSAEDL 580
+P L+ + L L+ ++L
Sbjct: 95 VAPPALRGRLLPYLAEDEL 113
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 112/278 (40%), Gaps = 52/278 (18%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L+ ++ LT+I+ + L+ L +++ +N++ I L+ LT L L + N
Sbjct: 62 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 117
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGAL 305
+ ++ K L+ L RLE++ +D AL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSS---------NTISDI-------------------SAL 147
Query: 306 VGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP---IECGCNILWLREMLVRRNT 362
GL +L L+ N T + + L +DI+ N I + L ++ N
Sbjct: 148 SGLTSLQQLSFSSNQVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 206
Query: 363 SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT 422
+ PL I + ++L G L +I L+ L L L +N++ ++
Sbjct: 207 ISDIT----PLG----ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNL-- 254
Query: 423 KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 460
LS LT+L EL++G N S + GL+ L LE+
Sbjct: 255 APLSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 290
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 112/278 (40%), Gaps = 52/278 (18%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L+ ++ LT+I+ + L+ L +++ +N++ I L+ LT L L + N
Sbjct: 62 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 117
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGAL 305
+ ++ K L+ L RLE++ +D AL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSS---------NTISDI-------------------SAL 147
Query: 306 VGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP---IECGCNILWLREMLVRRNT 362
GL +L L+ N T + + L +DI+ N I + L ++ N
Sbjct: 148 SGLTSLQQLSFSSNQVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 206
Query: 363 SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT 422
+ PL I + ++L G L +I L+ L L L +N++ ++
Sbjct: 207 ISDIT----PLG----ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNL-- 254
Query: 423 KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 460
LS LT+L EL++G N S + GL+ L LE+
Sbjct: 255 APLSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 290
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 383 AEDLGCAGAG---LTNISDN-----AFRGLS-GLRSLVLTDNRLQSIPTKQLSKLTRLEE 433
A D CA A + N+S N FR L ++ L L +NR+ SIP K ++ L L+E
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIP-KDVTHLQALQE 477
Query: 434 LEIGQNGFSMLEAGCFKGLSYLKRL 458
L + N + G F L+ L+ +
Sbjct: 478 LNVASNQLKSVPDGVFDRLTSLQYI 502
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 10/148 (6%)
Query: 122 FGQNRIS-RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGM--LAELRVGLNVFTTL 178
F QN + + Q C L L+ L L N L++ + + M L L V LN +
Sbjct: 360 FTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418
Query: 179 A-DGAFNGLGRLSALDLRGAGLTNISDNAFRGLS-GLRSLVLTDNRLQSIPTKQLSKLTR 236
A D + L+L LT + FR L ++ L L +NR+ SIP K ++ L
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTG---SVFRCLPPKVKVLDLHNNRIMSIP-KDVTHLQA 474
Query: 237 LEELEIGQNGFSMLEAGCFKGLSYLKRL 264
L+EL + N + G F L+ L+ +
Sbjct: 475 LQELNVASNQLKSVPDGVFDRLTSLQYI 502
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
+ L L N + + P +L L LR+ N +L F L LD+ L N
Sbjct: 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN 114
Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLE 251
IS ++ LR L L+ N +P K+ LT+L L + F L+
Sbjct: 115 ISCCP---MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD 162
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 304 ALVGLP-NLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRN 361
AL LP L L N TS P+LRT + NP C C++ +LR L R
Sbjct: 24 ALPALPARTTELVLTGNNLTSVPPGAFDHLPQLRTAHLGANPWRCDCSLTYLRLWLEDRP 83
Query: 362 TSAVF----CNSPAPLKYKSLISLSAEDL--GCAGAGLTN 395
A + C +P L+ + L L+ ++L CA L++
Sbjct: 84 ERAPYRDLRCVAPPALRGRLLPYLAEDELRAACAPGPLSS 123
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 498 ALVGLP-NLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRN 555
AL LP L L N TS P+LRT + NP C C++ +LR L R
Sbjct: 24 ALPALPARTTELVLTGNNLTSVPPGAFDHLPQLRTAHLGANPWRCDCSLTYLRLWLEDRP 83
Query: 556 TSAVF----CNSPAPLKYKSLISLSAEDL 580
A + C +P L+ + L L+ ++L
Sbjct: 84 ERAPYRDLRCVAPPALRGRLLPYLAEDEL 112
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L++LD + +T+++ L+GL L+ T N +I T LS+ T L L N
Sbjct: 41 LATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSN---NITTLDLSQNTNLTYLACDSN 95
Query: 246 GFSMLEAGCFKGLSYL 261
+ L+ L+YL
Sbjct: 96 KLTNLDVTPLTKLTYL 111
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 112/278 (40%), Gaps = 53/278 (19%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L+ ++ LT+I+ + L+ L +++ +N++ I L+ LT L L + N
Sbjct: 62 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 117
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGAL 305
+ ++ K L+ L RLE++ +D AL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSS---------NTISDI-------------------SAL 147
Query: 306 VGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP---IECGCNILWLREMLVRRNT 362
GL +L LN N T + + L +DI+ N I + L ++ N
Sbjct: 148 SGLTSLQQLNFG-NQVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 205
Query: 363 SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT 422
+ PL I + ++L G L +I L+ L L L +N++ ++
Sbjct: 206 ISDIT----PLG----ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNL-- 253
Query: 423 KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 460
LS LT+L EL++G N S + GL+ L LE+
Sbjct: 254 APLSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 289
>pdb|3G04|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
pdb|2XWT|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Blocking Type Tshr Autoantibody
Length = 239
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN-GFSMLEAGCFKGLSYLKRLEITGASNL 272
++L L + L++IP+ S L + + + + LE+ F LS + +EI NL
Sbjct: 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93
Query: 273 TRVRKGAFAD 282
T + A +
Sbjct: 94 TYIDPDALKE 103
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN-GFSMLEAGCFKGLSYLKRLEITGASNL 466
++L L + L++IP+ S L + + + + LE+ F LS + +EI NL
Sbjct: 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93
Query: 467 TRVRKGAFAD 476
T + A +
Sbjct: 94 TYIDPDALKE 103
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 112/278 (40%), Gaps = 53/278 (19%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L+ ++ LT+I+ + L+ L +++ +N++ I L+ LT L L + N
Sbjct: 62 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 117
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGAL 305
+ ++ K L+ L RLE++ +D AL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSS---------NTISDI-------------------SAL 147
Query: 306 VGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP---IECGCNILWLREMLVRRNT 362
GL +L LN N T + + L +DI+ N I + L ++ N
Sbjct: 148 SGLTSLQQLNFG-NQVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 205
Query: 363 SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT 422
+ PL I + ++L G L +I L+ L L L +N++ ++
Sbjct: 206 ISDIT----PLG----ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNL-- 253
Query: 423 KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 460
LS LT+L EL++G N S + GL+ L LE+
Sbjct: 254 APLSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 289
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 384 EDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 443
++L G L +I L+ L L L +N++ ++ LS LT+L EL++G N S
Sbjct: 224 DELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISN 279
Query: 444 LEAGCFKGLSYLKRLEI 460
+ GL+ L LE+
Sbjct: 280 ISP--LAGLTALTNLEL 294
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 384 EDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 443
++L G L +I L+ L L L +N++ ++ LS LT+L EL++G N S
Sbjct: 223 DELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISN 278
Query: 444 LEAGCFKGLSYLKRLEI 460
+ GL+ L LE+
Sbjct: 279 ISP--LAGLTALTNLEL 293
>pdb|3SB4|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
pdb|3SB4|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
Length = 329
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 9/172 (5%)
Query: 60 VDSAIPIYLSLQHVDLSH--TTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPR 117
DS I++ L D W EP E +Q+ +I + + PR
Sbjct: 145 ADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE--TTIQVGAXGKLEDEIXKAGLQPR 202
Query: 118 RVEIFGQNRISRIDQACFEGLTAL--RILYLDDNQLRSVPTPSFIYLGMLAELRVGL-NV 174
+ ++D A F+ + ++ LD ++ + P F + L++ L +
Sbjct: 203 DINFLTIE--GKLDNADFKLIRDYXPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN 260
Query: 175 FTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI 226
T+ F+ GRL+ A +T I AF G LR ++ T +++ ++
Sbjct: 261 LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFXGCDNLRYVLATGDKITTL 312
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 106/256 (41%), Gaps = 49/256 (19%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
N+ E+ L +P I LV+ N + ++ + P +L+ T+ ++P G
Sbjct: 46 NVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPG--- 102
Query: 90 PQEKLVELQLNHNK--HFPQ--QIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILY 145
L+EL + N H P +C ++ IFG N+++ + GL L +
Sbjct: 103 ----LLELSIFSNPLTHLPALPSGLC------KLWIFG-NQLTSLP-VLPPGLQELSV-- 148
Query: 146 LDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD 204
DNQL S+P PS L +L N T+L +GL LS D + A L +
Sbjct: 149 -SDNQLASLPALPS-----ELCKLWAYNNQLTSLP-MLPSGLQELSVSDNQLASLPTLPS 201
Query: 205 NAFRGL-------------SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFS 248
++ SGL+ L+++ NRL S+P + L+EL + N
Sbjct: 202 ELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP----SELKELMVSGNRLTSLP 257
Query: 249 MLEAGCFKGLSYLKRL 264
ML +G Y +L
Sbjct: 258 MLPSGLLSLSVYRNQL 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,007,488
Number of Sequences: 62578
Number of extensions: 570729
Number of successful extensions: 1957
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 973
Number of HSP's gapped (non-prelim): 631
length of query: 581
length of database: 14,973,337
effective HSP length: 104
effective length of query: 477
effective length of database: 8,465,225
effective search space: 4037912325
effective search space used: 4037912325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)