Query psy8551
Match_columns 581
No_of_seqs 254 out of 3396
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 21:46:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 1.3E-55 4.6E-60 471.5 42.4 533 11-577 2-603 (606)
2 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-53 4.3E-58 456.2 38.5 520 17-579 7-603 (606)
3 1ziw_A TOLL-like receptor 3; i 100.0 4E-54 1.4E-58 466.2 34.8 553 17-580 2-670 (680)
4 4g8a_A TOLL-like receptor 4; l 100.0 4E-49 1.4E-53 424.5 40.1 525 10-577 20-623 (635)
5 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-49 3.9E-54 439.2 30.6 538 16-578 1-605 (844)
6 2z63_A TOLL-like receptor 4, v 100.0 4.3E-48 1.5E-52 410.7 34.5 511 16-565 2-561 (570)
7 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-46 5E-51 396.8 26.6 501 32-574 13-545 (549)
8 3rgz_A Protein brassinosteroid 100.0 5.4E-45 1.8E-49 397.9 32.9 471 46-548 78-560 (768)
9 3rgz_A Protein brassinosteroid 100.0 5.6E-43 1.9E-47 382.0 34.6 410 45-463 100-548 (768)
10 3t6q_A CD180 antigen; protein- 100.0 1.1E-41 3.6E-46 363.9 43.8 486 47-564 14-564 (606)
11 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-44 5.5E-49 378.3 20.2 452 25-565 3-511 (520)
12 3v47_A TOLL-like receptor 5B a 100.0 1.1E-42 3.7E-47 358.4 31.2 420 11-565 2-438 (455)
13 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.4E-43 1.5E-47 370.3 27.8 475 10-579 21-558 (562)
14 1ziw_A TOLL-like receptor 3; i 100.0 2.3E-41 7.9E-46 366.2 41.4 465 48-540 7-574 (680)
15 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-41 7.9E-46 361.3 35.7 456 46-540 12-535 (606)
16 2id5_A Lingo-1, leucine rich r 100.0 1.2E-40 4.1E-45 344.9 30.4 370 11-578 1-374 (477)
17 2z63_A TOLL-like receptor 4, v 100.0 2.2E-39 7.7E-44 343.7 34.6 435 46-541 8-509 (570)
18 4eco_A Uncharacterized protein 100.0 1.5E-39 5.3E-44 346.7 27.9 448 25-541 63-602 (636)
19 3j0a_A TOLL-like receptor 5; m 100.0 2.8E-39 9.6E-44 356.4 29.9 478 48-543 7-543 (844)
20 4ecn_A Leucine-rich repeat pro 100.0 5.4E-38 1.8E-42 339.9 31.3 434 45-541 323-842 (876)
21 2z81_A CD282 antigen, TOLL-lik 100.0 2.8E-37 9.7E-42 325.8 25.3 452 49-541 9-488 (549)
22 2z7x_B TOLL-like receptor 1, v 100.0 7.8E-38 2.7E-42 327.6 16.2 431 48-540 3-458 (520)
23 4eco_A Uncharacterized protein 100.0 2.3E-36 7.9E-41 322.3 23.7 399 77-543 192-630 (636)
24 4ecn_A Leucine-rich repeat pro 100.0 1.5E-35 5.1E-40 320.8 26.6 400 78-544 435-871 (876)
25 4g8a_A TOLL-like receptor 4; l 100.0 2.7E-34 9.3E-39 308.9 36.0 456 48-542 34-558 (635)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.6E-35 2.6E-39 307.4 23.1 432 46-540 32-487 (562)
27 3o6n_A APL1; leucine-rich repe 100.0 1E-33 3.4E-38 284.9 26.5 339 138-569 44-383 (390)
28 1o6v_A Internalin A; bacterial 100.0 3.2E-33 1.1E-37 287.7 30.6 348 45-521 46-393 (466)
29 3oja_B Anopheles plasmodium-re 100.0 1.8E-33 6.2E-38 298.3 25.6 120 404-553 253-372 (597)
30 1jl5_A Outer protein YOPM; leu 100.0 4.9E-33 1.7E-37 283.6 27.2 246 45-344 11-269 (454)
31 3v47_A TOLL-like receptor 5B a 100.0 1.9E-32 6.4E-37 281.9 29.4 353 48-540 13-385 (455)
32 1o6v_A Internalin A; bacterial 100.0 1.8E-32 6E-37 282.2 28.9 346 66-540 44-389 (466)
33 1jl5_A Outer protein YOPM; leu 100.0 2.6E-31 8.9E-36 270.9 28.4 383 32-542 19-432 (454)
34 3o6n_A APL1; leucine-rich repe 100.0 5.5E-31 1.9E-35 264.9 27.7 262 45-344 45-307 (390)
35 4fmz_A Internalin; leucine ric 100.0 5E-31 1.7E-35 261.0 26.3 306 136-539 41-346 (347)
36 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-30 1.2E-34 262.8 32.4 350 44-506 41-402 (457)
37 3zyj_A Leucine-rich repeat-con 100.0 1.6E-30 5.5E-35 265.5 28.2 304 9-389 31-340 (440)
38 3zyj_A Leucine-rich repeat-con 100.0 3.8E-30 1.3E-34 262.8 29.2 288 212-580 44-337 (440)
39 3zyi_A Leucine-rich repeat-con 100.0 4.1E-30 1.4E-34 263.5 29.5 304 9-390 42-352 (452)
40 3bz5_A Internalin-J, INLJ; leu 100.0 1E-29 3.5E-34 259.3 31.9 334 132-546 35-394 (457)
41 2id5_A Lingo-1, leucine rich r 100.0 9E-31 3.1E-35 270.8 23.1 300 31-356 39-344 (477)
42 4fmz_A Internalin; leucine ric 100.0 6.9E-30 2.4E-34 252.8 28.0 300 45-463 44-343 (347)
43 3oja_B Anopheles plasmodium-re 100.0 6.7E-30 2.3E-34 270.9 29.2 262 45-344 51-313 (597)
44 1xku_A Decorin; proteoglycan, 100.0 5.4E-30 1.9E-34 251.5 26.4 299 7-342 19-329 (330)
45 3zyi_A Leucine-rich repeat-con 100.0 1.2E-29 4.2E-34 259.9 28.7 266 236-579 76-347 (452)
46 2z66_A Variable lymphocyte rec 100.0 6.2E-30 2.1E-34 248.3 24.7 284 214-577 10-304 (306)
47 2ft3_A Biglycan; proteoglycan, 100.0 5.8E-30 2E-34 251.4 23.1 297 9-343 23-331 (332)
48 2ft3_A Biglycan; proteoglycan, 100.0 4.7E-29 1.6E-33 244.9 27.3 256 32-345 12-277 (332)
49 1xku_A Decorin; proteoglycan, 100.0 1.7E-28 5.7E-33 240.9 28.6 244 45-345 31-276 (330)
50 1ozn_A Reticulon 4 receptor; N 100.0 9.8E-29 3.4E-33 237.1 25.6 245 284-580 32-281 (285)
51 2z80_A TOLL-like receptor 2, v 100.0 5.8E-30 2E-34 253.7 15.9 300 11-360 22-330 (353)
52 2z80_A TOLL-like receptor 2, v 100.0 2.4E-29 8.2E-34 249.2 18.7 306 137-565 29-344 (353)
53 1ozn_A Reticulon 4 receptor; N 100.0 1.1E-28 3.8E-33 236.8 22.1 234 12-269 1-235 (285)
54 2z66_A Variable lymphocyte rec 100.0 1.4E-28 4.8E-33 238.7 22.9 267 13-358 1-274 (306)
55 1ogq_A PGIP-2, polygalacturona 99.9 6.9E-27 2.4E-31 226.9 17.6 251 45-346 50-305 (313)
56 2xwt_C Thyrotropin receptor; s 99.9 5.1E-27 1.7E-31 218.9 15.0 226 10-269 1-236 (239)
57 1z7x_W Ribonuclease inhibitor; 99.9 7.8E-30 2.7E-34 262.9 -5.4 388 44-543 2-444 (461)
58 2o6q_A Variable lymphocyte rec 99.9 2.1E-25 7.3E-30 211.8 24.1 237 285-580 17-262 (270)
59 1z7x_W Ribonuclease inhibitor; 99.9 1.8E-29 6.3E-34 260.1 -6.8 355 139-541 3-413 (461)
60 1p9a_G Platelet glycoprotein I 99.9 2.6E-25 8.7E-30 212.9 22.3 216 281-554 7-223 (290)
61 2o6q_A Variable lymphocyte rec 99.9 4.3E-25 1.5E-29 209.7 20.1 209 15-249 10-219 (270)
62 2z62_A TOLL-like receptor 4, v 99.9 2.8E-25 9.7E-30 211.9 17.9 227 16-269 2-234 (276)
63 1ogq_A PGIP-2, polygalacturona 99.9 1.7E-25 5.7E-30 217.1 14.8 254 211-544 50-309 (313)
64 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-24 4.4E-29 228.0 22.3 270 11-346 29-298 (622)
65 2z62_A TOLL-like receptor 4, v 99.9 2.2E-24 7.6E-29 205.7 20.6 228 285-565 29-267 (276)
66 2v9t_B SLIT homolog 2 protein 99.9 1.4E-24 4.7E-29 198.9 17.4 191 386-581 16-209 (220)
67 3ogk_B Coronatine-insensitive 99.9 7.6E-27 2.6E-31 248.5 -1.3 326 161-540 162-527 (592)
68 3m19_A Variable lymphocyte rec 99.9 2.2E-23 7.4E-28 195.6 20.8 210 310-572 15-240 (251)
69 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-24 6.6E-29 210.2 14.1 248 213-549 12-260 (317)
70 3ogk_B Coronatine-insensitive 99.9 4E-27 1.4E-31 250.6 -5.8 393 66-536 110-548 (592)
71 3g06_A SSPH2 (leucine-rich rep 99.9 6.4E-23 2.2E-27 215.2 25.7 268 45-452 40-307 (622)
72 4ay9_X Follicle-stimulating ho 99.9 1.8E-23 6.2E-28 206.3 17.6 247 13-293 2-255 (350)
73 2v70_A SLIT-2, SLIT homolog 2 99.9 4.9E-23 1.7E-27 188.6 16.9 190 386-580 16-209 (220)
74 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-23 5.2E-28 203.9 13.9 244 47-352 12-257 (317)
75 1p9a_G Platelet glycoprotein I 99.9 3.3E-22 1.1E-26 191.3 22.9 218 135-360 6-223 (290)
76 3m19_A Variable lymphocyte rec 99.9 4.8E-23 1.7E-27 193.2 15.7 186 12-223 3-191 (251)
77 4fcg_A Uncharacterized protein 99.9 1E-23 3.4E-28 205.8 10.1 241 26-294 58-311 (328)
78 1wwl_A Monocyte differentiatio 99.9 5.3E-24 1.8E-28 206.7 6.6 244 45-345 43-309 (312)
79 3oja_A Leucine-rich immune mol 99.9 1.5E-22 5.2E-27 208.2 17.6 226 234-548 33-259 (487)
80 3oja_A Leucine-rich immune mol 99.9 1E-22 3.5E-27 209.5 13.9 149 69-250 35-184 (487)
81 2p1m_B Transport inhibitor res 99.9 4.3E-25 1.5E-29 235.0 -4.9 417 49-538 47-518 (594)
82 2wfh_A SLIT homolog 2 protein 99.9 5E-22 1.7E-26 177.6 15.1 168 408-581 13-183 (193)
83 4fcg_A Uncharacterized protein 99.9 4.7E-22 1.6E-26 193.9 15.0 224 66-319 79-311 (328)
84 2o6s_A Variable lymphocyte rec 99.9 4.5E-22 1.6E-26 181.0 12.6 188 13-235 1-189 (208)
85 3rfs_A Internalin B, repeat mo 99.9 4.9E-21 1.7E-25 181.8 20.3 195 305-553 37-233 (272)
86 2xot_A Amphoterin-induced prot 99.9 1.8E-21 6.1E-26 192.8 16.8 207 312-571 21-241 (361)
87 2p1m_B Transport inhibitor res 99.9 2E-25 7E-30 237.6 -12.5 414 45-536 66-541 (594)
88 1wwl_A Monocyte differentiatio 99.9 5E-23 1.7E-27 199.8 4.6 228 40-322 58-309 (312)
89 2v9t_B SLIT homolog 2 protein 99.9 2.6E-21 8.8E-26 177.1 15.0 162 11-200 3-165 (220)
90 2xwt_C Thyrotropin receptor; s 99.9 2.2E-21 7.7E-26 180.5 14.4 207 56-294 22-236 (239)
91 3rfs_A Internalin B, repeat mo 99.9 6.2E-21 2.1E-25 181.1 17.4 221 46-302 20-240 (272)
92 1w8a_A SLIT protein; signaling 99.9 8.4E-21 2.9E-25 169.7 16.0 168 408-580 11-182 (192)
93 2xot_A Amphoterin-induced prot 99.9 1.4E-21 4.8E-26 193.5 11.6 192 8-248 7-202 (361)
94 3e6j_A Variable lymphocyte rec 99.9 1.6E-20 5.6E-25 173.0 17.2 185 386-580 24-223 (229)
95 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-20 3.5E-25 173.1 15.4 162 11-200 3-166 (220)
96 4fs7_A Uncharacterized protein 99.8 1.3E-18 4.3E-23 174.5 28.2 335 80-531 59-393 (394)
97 4fs7_A Uncharacterized protein 99.8 1.5E-18 5.2E-23 174.0 27.9 318 126-536 58-376 (394)
98 4ay9_X Follicle-stimulating ho 99.8 8E-20 2.7E-24 180.2 18.1 240 48-318 12-255 (350)
99 1h6u_A Internalin H; cell adhe 99.8 6.3E-20 2.2E-24 177.3 16.9 188 44-269 40-227 (308)
100 1h6u_A Internalin H; cell adhe 99.8 3.6E-19 1.2E-23 171.9 16.9 197 256-520 38-234 (308)
101 2ast_B S-phase kinase-associat 99.8 3E-20 1E-24 182.7 4.5 250 45-326 47-310 (336)
102 3e6j_A Variable lymphocyte rec 99.8 1.8E-18 6.1E-23 159.3 15.4 159 13-200 13-172 (229)
103 2o6s_A Variable lymphocyte rec 99.8 1.4E-18 4.7E-23 157.9 14.3 179 47-257 9-187 (208)
104 2wfh_A SLIT homolog 2 protein 99.8 1.1E-18 3.9E-23 155.7 12.6 138 11-176 2-139 (193)
105 2ca6_A RAN GTPase-activating p 99.8 3.3E-20 1.1E-24 185.8 2.0 267 52-355 16-327 (386)
106 4glp_A Monocyte differentiatio 99.8 1.1E-18 3.6E-23 169.2 12.1 227 46-322 65-307 (310)
107 3goz_A Leucine-rich repeat-con 99.8 6.1E-20 2.1E-24 182.0 3.0 254 49-347 2-299 (362)
108 3goz_A Leucine-rich repeat-con 99.8 4.7E-20 1.6E-24 182.8 2.0 202 122-345 5-238 (362)
109 3sb4_A Hypothetical leucine ri 99.8 1.1E-18 3.7E-23 170.5 10.6 265 138-485 48-328 (329)
110 4glp_A Monocyte differentiatio 99.8 7.8E-19 2.7E-23 170.1 9.4 197 45-269 91-304 (310)
111 1h6t_A Internalin B; cell adhe 99.8 4.4E-18 1.5E-22 162.8 14.3 171 45-251 46-216 (291)
112 4fdw_A Leucine rich hypothetic 99.8 1E-16 3.5E-21 159.7 24.7 261 138-462 112-379 (401)
113 4fdw_A Leucine rich hypothetic 99.8 1.4E-16 4.8E-21 158.7 25.0 270 159-488 109-380 (401)
114 2ast_B S-phase kinase-associat 99.8 2.2E-19 7.4E-24 176.5 4.1 57 188-248 48-106 (336)
115 3sb4_A Hypothetical leucine ri 99.8 1.7E-18 6E-23 169.1 10.1 260 44-339 24-328 (329)
116 4gt6_A Cell surface protein; l 99.7 3.7E-16 1.3E-20 156.5 26.1 322 127-538 51-390 (394)
117 1w8a_A SLIT protein; signaling 99.7 8.4E-18 2.9E-22 150.2 11.8 137 12-176 1-139 (192)
118 3cvr_A Invasion plasmid antige 99.7 4.4E-17 1.5E-21 168.8 16.5 179 46-252 60-247 (571)
119 1h6t_A Internalin B; cell adhe 99.7 1.3E-17 4.4E-22 159.5 10.3 186 46-269 25-210 (291)
120 2o6r_A Variable lymphocyte rec 99.7 8.1E-17 2.8E-21 142.0 14.7 153 407-564 9-166 (177)
121 1m9s_A Internalin B; cell inva 99.7 5.4E-17 1.9E-21 170.1 15.8 179 44-258 42-220 (605)
122 2ca6_A RAN GTPase-activating p 99.7 2.6E-18 8.9E-23 172.0 4.7 119 281-445 184-319 (386)
123 2o6r_A Variable lymphocyte rec 99.7 5.5E-17 1.9E-21 143.1 12.6 136 13-176 1-137 (177)
124 4gt6_A Cell surface protein; l 99.7 1.9E-15 6.6E-20 151.4 25.5 314 125-515 73-390 (394)
125 3cvr_A Invasion plasmid antige 99.7 2.4E-16 8.3E-21 163.2 18.8 181 69-301 60-247 (571)
126 1xeu_A Internalin C; cellular 99.7 1.2E-17 4.1E-22 157.1 8.2 171 45-252 19-189 (263)
127 3g39_A Variable lymphocyte rec 99.7 1.5E-16 5.2E-21 138.8 12.8 141 407-580 11-163 (170)
128 1m9s_A Internalin B; cell inva 99.7 6.7E-17 2.3E-21 169.4 10.5 188 45-270 21-208 (605)
129 4ezg_A Putative uncharacterize 99.7 9E-17 3.1E-21 144.3 8.9 154 65-249 41-195 (197)
130 4ezg_A Putative uncharacterize 99.7 5.1E-17 1.7E-21 145.9 5.7 150 45-224 44-194 (197)
131 2r9u_A Variable lymphocyte rec 99.7 7.8E-16 2.7E-20 134.7 12.9 140 408-580 15-169 (174)
132 1xeu_A Internalin C; cellular 99.6 9.7E-16 3.3E-20 144.0 11.3 162 32-228 27-189 (263)
133 4h09_A Hypothetical leucine ri 99.6 3E-13 1E-17 134.8 28.9 300 127-504 57-357 (379)
134 1dce_A Protein (RAB geranylger 99.6 3.8E-18 1.3E-22 177.8 -7.0 199 44-265 348-566 (567)
135 4h09_A Hypothetical leucine ri 99.6 8.4E-13 2.9E-17 131.5 29.3 300 137-525 44-355 (379)
136 2ell_A Acidic leucine-rich nuc 99.6 1.8E-15 6.2E-20 132.1 7.7 136 39-199 18-159 (168)
137 2ifg_A High affinity nerve gro 99.6 6.5E-15 2.2E-19 145.0 12.6 140 409-575 12-156 (347)
138 3g39_A Variable lymphocyte rec 99.6 5.2E-15 1.8E-19 129.0 9.9 115 12-154 2-117 (170)
139 2r9u_A Variable lymphocyte rec 99.6 7.1E-15 2.4E-19 128.5 10.4 117 11-155 4-121 (174)
140 2je0_A Acidic leucine-rich nuc 99.5 1.6E-14 5.6E-19 123.2 6.9 126 44-194 16-147 (149)
141 2ell_A Acidic leucine-rich nuc 99.5 4.2E-14 1.4E-18 123.3 9.4 136 66-227 22-163 (168)
142 1a9n_A U2A', U2A'; complex (nu 99.5 7E-14 2.4E-18 122.9 8.2 136 400-540 14-154 (176)
143 1a9n_A U2A', U2A'; complex (nu 99.5 6.2E-14 2.1E-18 123.2 6.9 90 135-224 60-153 (176)
144 2je0_A Acidic leucine-rich nuc 99.4 1.8E-13 6.3E-18 116.6 8.4 128 137-267 15-148 (149)
145 1dce_A Protein (RAB geranylger 99.4 4.7E-15 1.6E-19 154.5 -3.2 121 406-533 442-567 (567)
146 4b8c_D Glucose-repressible alc 99.4 9.5E-14 3.3E-18 149.3 2.5 155 45-227 173-332 (727)
147 4b8c_D Glucose-repressible alc 99.4 7.8E-14 2.7E-18 150.0 1.8 165 48-245 204-369 (727)
148 3rfe_A Platelet glycoprotein I 99.4 1.2E-12 4.3E-17 107.2 7.8 95 482-580 12-113 (130)
149 2ifg_A High affinity nerve gro 99.3 1.1E-11 3.7E-16 121.9 11.0 111 13-153 1-117 (347)
150 1ds9_A Outer arm dynein; leuci 99.2 8E-14 2.7E-18 125.1 -7.3 129 46-202 24-155 (198)
151 1ds9_A Outer arm dynein; leuci 99.2 5.7E-14 1.9E-18 126.0 -11.2 87 135-224 66-153 (198)
152 3un9_A NLR family member X1; l 99.0 2.7E-11 9.3E-16 119.3 -0.9 111 140-250 127-254 (372)
153 3un9_A NLR family member X1; l 99.0 1.4E-11 4.8E-16 121.4 -4.0 89 137-225 153-253 (372)
154 3e4g_A ATP synthase subunit S, 98.5 8E-09 2.7E-13 88.1 -1.4 85 430-514 62-150 (176)
155 2ra8_A Uncharacterized protein 98.5 5.6E-08 1.9E-12 94.8 3.6 135 402-540 169-321 (362)
156 3rfe_A Platelet glycoprotein I 98.5 1.3E-07 4.5E-12 77.2 4.8 65 12-81 1-68 (130)
157 3e4g_A ATP synthase subunit S, 98.4 2.5E-08 8.7E-13 85.1 0.2 90 405-494 61-155 (176)
158 1io0_A Tropomodulin; LRR prote 98.3 2.1E-07 7.1E-12 81.7 1.7 120 399-540 30-165 (185)
159 2ra8_A Uncharacterized protein 98.2 4.2E-07 1.4E-11 88.6 3.5 66 185-250 250-322 (362)
160 1io0_A Tropomodulin; LRR prote 98.0 6.1E-07 2.1E-11 78.7 0.1 117 132-248 29-164 (185)
161 3rw6_A Nuclear RNA export fact 97.7 8.5E-06 2.9E-10 75.1 1.4 65 136-201 167-234 (267)
162 3rw6_A Nuclear RNA export fact 97.6 7.2E-06 2.5E-10 75.6 -1.0 63 186-249 169-234 (267)
163 1pgv_A TMD-1, tropomodulin TMD 96.8 0.0012 3.9E-08 57.4 4.8 42 135-176 66-111 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00089 3E-08 58.1 3.2 63 136-198 95-168 (197)
165 2lz0_A Uncharacterized protein 91.8 0.34 1.2E-05 36.6 5.9 49 390-439 5-53 (100)
166 2lz0_A Uncharacterized protein 87.5 1.6 5.5E-05 32.9 6.6 45 199-244 8-52 (100)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-55 Score=471.45 Aligned_cols=533 Identities=22% Similarity=0.310 Sum_probs=437.1
Q ss_pred hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCCCC
Q psy8551 11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFE 89 (581)
Q Consensus 11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~~~ 89 (581)
+.|+..|.|.. ..+.+.| .+.+++.+|..+++++++|+|++|.++.++ ..|.++++|++|++++|.++.+.+.+|.
T Consensus 2 ~~~~~~C~~~~-~~~~~~c--~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 78 (606)
T 3t6q_A 2 TSSDQKCIEKE-VNKTYNC--ENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ 78 (606)
T ss_dssp ----CCCEEEE-TTTEEEC--TTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT
T ss_pred ccccCceeccc-CCceEEC--CCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc
Confidence 57888999875 4467899 999999999999999999999999999884 5899999999999999999999889999
Q ss_pred CCCcccEEeCCCCCCCCcccccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcE
Q psy8551 90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 167 (581)
Q Consensus 90 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~ 167 (581)
++++|++|++++|.+. .-.+..+...++|+ +++.|.++.+.+..++++++|++|++++|.+..++...+..+++|++
T Consensus 79 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157 (606)
T ss_dssp TCTTCCEEECTTCCCS-EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred CccccCeeeCCCCccc-ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence 9999999999999862 22223445567777 77889999988888999999999999999999876556666999999
Q ss_pred EECCCCcceeccCCcCCCCCCCc--EEEcCCCCccccCccccCCC-----------------------------------
Q psy8551 168 LRVGLNVFTTLADGAFNGLGRLS--ALDLRGAGLTNISDNAFRGL----------------------------------- 210 (581)
Q Consensus 168 L~L~~n~~~~~~~~~l~~l~~L~--~L~L~~~~l~~~~~~~l~~~----------------------------------- 210 (581)
|++++|.++++.+..+..+++|+ .|++++|.++.+.+..+...
T Consensus 158 L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~ 237 (606)
T 3t6q_A 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237 (606)
T ss_dssp EECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTT
T ss_pred EEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcc
Confidence 99999999988777788888888 88999998887665443321
Q ss_pred ----------------CCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCcee
Q psy8551 211 ----------------SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTR 274 (581)
Q Consensus 211 ----------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 274 (581)
.+|+.|++++|.++.+++..+..+++|++|++++|.++.++. .+..+++|+.|++.+| .+..
T Consensus 238 ~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n-~l~~ 315 (606)
T 3t6q_A 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSAN-KFEN 315 (606)
T ss_dssp SCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTC-CCSB
T ss_pred ccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccC-CcCc
Confidence 167888889999998888889999999999999999886655 4788899999999986 5566
Q ss_pred ecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccc---cccccCCCCcceEEccCCCCccCCchh
Q psy8551 275 VRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSF---SESMLAWPELRTIDIAENPIECGCNIL 351 (581)
Q Consensus 275 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~ 351 (581)
+.+..+..+++|++|++++|...+.++...+..+++|++|++++|.++.. +..+..+++|++|++++|.+....+.
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~- 394 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE- 394 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH-
Confidence 66677888899999999999655577777788999999999999998866 45677889999999999876422110
Q ss_pred hHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCcccc-CccccCCCCCCCEEEcCCCcCCccChhhhcCCCC
Q psy8551 352 WLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNI-SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTR 430 (581)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i-~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 430 (581)
.......+... ....+.+... ....|.++++|++|++++|.+++..+..+..+++
T Consensus 395 ----------------------~~~~l~~L~~L--~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 395 ----------------------AFKECPQLELL--DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp ----------------------TTTTCTTCSEE--ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred ----------------------HhcCCccCCeE--ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 01111222222 2223333333 2345778999999999999999988888999999
Q ss_pred CcEeecCCCcceee---ccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccE
Q psy8551 431 LEELEIGQNGFSML---EAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYH 507 (581)
Q Consensus 431 L~~L~l~~~~i~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 507 (581)
|++|++++|.+.+. .+..+..+++|++|++++| .++.+.+..|.++++|++|++++| .+..+++..+.++++| +
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~ 527 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-Y 527 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-E
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-E
Confidence 99999999998762 3356889999999999984 788888889999999999999999 7777778889999999 9
Q ss_pred EEcCCCcceeec-cccccCCcceEEecCCCcccccCchhHHHHHHhhc-----CCCceeeCCCcccccccccccCc
Q psy8551 508 LNLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREMLVRR-----NTSAVFCNSPAPLKYKSLISLSA 577 (581)
Q Consensus 508 L~l~~n~l~~l~-~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~-----~~~~~~c~~~~~~~~~~~~~~~~ 577 (581)
|++++|.++.++ ..+..+++|++|++++||+.|+|+..||.+|.+.. +...+.|..|..++|+++.+++.
T Consensus 528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~ 603 (606)
T 3t6q_A 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603 (606)
T ss_dssp EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGGGCCC
T ss_pred EECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeeeeeec
Confidence 999999999775 45678899999999999999999999999999874 34556899999999999999875
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-53 Score=456.18 Aligned_cols=520 Identities=21% Similarity=0.250 Sum_probs=386.1
Q ss_pred CCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCccc
Q psy8551 17 YEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLV 95 (581)
Q Consensus 17 c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~ 95 (581)
|.|.. ..+++.| .+.+++.+|..+++++++|+|++|.++.++. .|.++++|++|++++|.++.+++.+|.++++|+
T Consensus 7 c~~~~-~~~~~~c--~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~ 83 (606)
T 3vq2_A 7 CIEVV-PNITYQC--MDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83 (606)
T ss_dssp CEEEE-TTTEEEC--TTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred ceecC-CCCceEc--cCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence 55532 4467999 9999999999999999999999999998876 899999999999999999999888999999999
Q ss_pred EEeCCCCCCCCcccccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccC-CcccccCccCcEEECCC
Q psy8551 96 ELQLNHNKHFPQQIVCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP-TPSFIYLGMLAELRVGL 172 (581)
Q Consensus 96 ~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~L~~ 172 (581)
+|++++|.+ ..-.+..+..+++|+ +++.|.++.+.+..++++++|++|++++|.+..+. +..+.++++|++|++++
T Consensus 84 ~L~Ls~n~l-~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 84 NLILTGNPI-QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp EEECTTCCC-CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred EeECCCCcc-cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence 999999986 222233455567777 77889999988788999999999999999998633 44789999999999999
Q ss_pred CcceeccCCcCCCCCCCc----EEEcCCCCccccCccccCCCCCCcEEECCCCcCC------------------------
Q psy8551 173 NVFTTLADGAFNGLGRLS----ALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ------------------------ 224 (581)
Q Consensus 173 n~~~~~~~~~l~~l~~L~----~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~------------------------ 224 (581)
|.++++++..+..+++|+ .+++++|.++.+.+..+... +|+.|++++|.++
T Consensus 163 n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~ 241 (606)
T 3vq2_A 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241 (606)
T ss_dssp SCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred CcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccc
Confidence 999988776676665544 78888888887766555443 6777777666542
Q ss_pred ----------------------------------ccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCC
Q psy8551 225 ----------------------------------SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 270 (581)
Q Consensus 225 ----------------------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 270 (581)
+..+. +..+++|++|+++++.+..++ .+..+++|+.|++.+|.
T Consensus 242 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~ 318 (606)
T 3vq2_A 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQ 318 (606)
T ss_dssp TTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCC
T ss_pred ccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh--hccccccCCEEEccccc
Confidence 11111 445567777777777766555 46667777777777764
Q ss_pred CceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccc---cccccCCCCcceEEccCCCCccC
Q psy8551 271 NLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSF---SESMLAWPELRTIDIAENPIECG 347 (581)
Q Consensus 271 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~~ 347 (581)
. ..++ .+ .+++|+.|++++|...... .+..+++|+.|++++|.++.. +..+..+++|++|++++|.+...
T Consensus 319 l-~~lp--~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 391 (606)
T 3vq2_A 319 L-KQFP--TL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM 391 (606)
T ss_dssp C-SSCC--CC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE
T ss_pred C-cccc--cC-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc
Confidence 3 4444 23 6667777777776434333 355667777777777766654 45556667777777777654321
Q ss_pred CchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCc-cccCCCCCCCEEEcCCCcCCccChhhhc
Q psy8551 348 CNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISD-NAFRGLSGLRSLVLTDNRLQSIPTKQLS 426 (581)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 426 (581)
. .....+..+.. +....+.+..+.. ..|.++++|+.|++++|.+++..+..+.
T Consensus 392 ~------------------------~~~~~l~~L~~--L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 445 (606)
T 3vq2_A 392 S------------------------ANFMGLEELQH--LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445 (606)
T ss_dssp C------------------------CCCTTCTTCCE--EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred h------------------------hhccCCCCCCe--eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence 0 00011111111 1122223333333 5677899999999999999988888899
Q ss_pred CCCCCcEeecCCCccee-eccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCc
Q psy8551 427 KLTRLEELEIGQNGFSM-LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL 505 (581)
Q Consensus 427 ~l~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L 505 (581)
.+++|++|++++|.+++ ..+..+..+++|++|++++| .++...+..+.++++|++|++++| .+..+.+..+.++++|
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTC
T ss_pred CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcC
Confidence 99999999999999987 57888999999999999985 788888889999999999999999 6777767889999999
Q ss_pred cEEEcCCCcceeeccccccCC-cceEEecCCCcccccCchhHHHHHHhhc-----CCCceeeCCCcccccccccccCccc
Q psy8551 506 YHLNLKENAFTSFSESMLAWP-ELRTIDIAENPIECGCNILWLREMLVRR-----NTSAVFCNSPAPLKYKSLISLSAED 579 (581)
Q Consensus 506 ~~L~l~~n~l~~l~~~~~~~~-~L~~L~l~~np~~c~c~~~~~~~~~~~~-----~~~~~~c~~~~~~~~~~~~~~~~~~ 579 (581)
++|++++|+++.+|..+..++ +|++|++++||+.|+|+++||.+|.+.. ....+.|..|..++|+++.++++++
T Consensus 524 ~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~~ 603 (606)
T 3vq2_A 524 STLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNST 603 (606)
T ss_dssp CEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSSGGGCCCC-----------------
T ss_pred CEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccccCCccceeCCChHhCCCEeeeccccc
Confidence 999999999999999888887 5999999999999999999999999774 3345689999999999999998764
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4e-54 Score=466.16 Aligned_cols=553 Identities=22% Similarity=0.279 Sum_probs=359.0
Q ss_pred CCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCccc
Q psy8551 17 YEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLV 95 (581)
Q Consensus 17 c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~ 95 (581)
|.|.. ..+.| ++.+++.||..+++++++|+|++|.++.++. .|.++++|++|++++|.++.+++.+|.++++|+
T Consensus 2 C~~~~---~~~~c--s~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 76 (680)
T 1ziw_A 2 CTVSH---EVADC--SHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76 (680)
T ss_dssp --CBS---SEEEC--CSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCC
T ss_pred ceeEC---CeeEC--CCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcC
Confidence 55554 56889 9999999999999999999999999998875 689999999999999999998888899999999
Q ss_pred EEeCCCCCC--CCcccccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECC
Q psy8551 96 ELQLNHNKH--FPQQIVCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG 171 (581)
Q Consensus 96 ~L~l~~n~~--~~~~~~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~ 171 (581)
+|++++|.+ ++... +..+++|+ +++.|.++.+.+..|+++++|++|++++|.++..+...+..+++|++|+++
T Consensus 77 ~L~L~~n~l~~l~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 77 VLNLQHNELSQLSDKT---FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp EEECCSSCCCCCCTTT---TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC
T ss_pred EEECCCCccCccChhh---hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc
Confidence 999999876 33333 34446666 667788888888888889999999999988888777677788888888888
Q ss_pred CCcceeccCCcC--CCCCCCcEEEcCCCCccccCcc--------------------------------------------
Q psy8551 172 LNVFTTLADGAF--NGLGRLSALDLRGAGLTNISDN-------------------------------------------- 205 (581)
Q Consensus 172 ~n~~~~~~~~~l--~~l~~L~~L~L~~~~l~~~~~~-------------------------------------------- 205 (581)
+|.++++++..+ ..+++|+.|++++|.++...+.
T Consensus 154 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233 (680)
T ss_dssp SSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred CCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence 887766554332 2345666666666655544433
Q ss_pred -------ccCCCC--CCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCC------
Q psy8551 206 -------AFRGLS--GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS------ 270 (581)
Q Consensus 206 -------~l~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~------ 270 (581)
.+..++ +|+.|++++|+++.+++..+..+++|++|++++|.+....+..+..+++|+.+++.++.
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 313 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence 222222 36666666666666655556666666666666666666655556666666666665432
Q ss_pred --CceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCC----------------------------
Q psy8551 271 --NLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENA---------------------------- 320 (581)
Q Consensus 271 --~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------------- 320 (581)
.+..+....+..+++|++|++++| .+..++...|..+++|++|++++|.
T Consensus 314 ~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~ 392 (680)
T 1ziw_A 314 LASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392 (680)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred cccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC
Confidence 112233334555666666666666 4555554455555555555555543
Q ss_pred Cccc-cccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceee--cCCCcccccccccCCccccccCCCCccccC
Q psy8551 321 FTSF-SESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFC--NSPAPLKYKSLISLSAEDLGCAGAGLTNIS 397 (581)
Q Consensus 321 l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 397 (581)
++.+ +..+..+++|++|++++|.+.+..+...+.............+ ....+..+.....+....+...........
T Consensus 393 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 472 (680)
T 1ziw_A 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred CCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC
Confidence 2222 1233444555555555555432111111000000000000000 000000011111222222211111111233
Q ss_pred ccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeecc--------ccccCCccccEEeecCCCCeeEe
Q psy8551 398 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA--------GCFKGLSYLKRLEITGASNLTRV 469 (581)
Q Consensus 398 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~--------~~~~~~~~L~~L~l~~~~~l~~~ 469 (581)
...|.++++|+.|++++|.++++++..+..+++|++|++++|.++.+.. ..+..+++|++|++++ +.++.+
T Consensus 473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i 551 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEI 551 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCC
T ss_pred CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCC
Confidence 4567788999999999999999988889999999999999999887533 2378899999999998 577788
Q ss_pred cCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecccc-c-cCCcceEEecCCCcccccCch-hH
Q psy8551 470 RKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-L-AWPELRTIDIAENPIECGCNI-LW 546 (581)
Q Consensus 470 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~-~~~~L~~L~l~~np~~c~c~~-~~ 546 (581)
+...|.++++|++|++++| .++.+++..+.++++|++|++++|+++.++... . .+++|+++++++|||.|+|+. +|
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~ 630 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW 630 (680)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSS
T ss_pred CHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHH
Confidence 8888999999999999999 888998888999999999999999999887653 3 689999999999999999996 99
Q ss_pred HHHHHhhcC------CCceeeCCCcccccccccccCcccc
Q psy8551 547 LREMLVRRN------TSAVFCNSPAPLKYKSLISLSAEDL 580 (581)
Q Consensus 547 ~~~~~~~~~------~~~~~c~~~~~~~~~~~~~~~~~~~ 580 (581)
|.+|..... ...++|+.|..++|+++.++++++.
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~ 670 (680)
T 1ziw_A 631 FVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC 670 (680)
T ss_dssp EECCSSCC--------------------------------
T ss_pred HHHHHHhcCcccccccCCcEECCchHHCCCcccccChhhc
Confidence 999986642 3467899999999999999998865
No 4
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4e-49 Score=424.51 Aligned_cols=525 Identities=19% Similarity=0.227 Sum_probs=335.8
Q ss_pred hhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCC
Q psy8551 10 RSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGF 88 (581)
Q Consensus 10 ~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~ 88 (581)
.|.|+.+|.+.. ..+++.| ++.++++||..+|+++++|+|++|+|+.++. .|.++++|++|||++|+|+.+++.+|
T Consensus 20 ~p~~~~~c~~~~-~~~~~~c--~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f 96 (635)
T 4g8a_A 20 IPESWEPCVEVV-PNITYQC--MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 96 (635)
T ss_dssp -----CCSEEEE-TTTEEEC--TTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred CCCCCCCccccC-CCCEEEC--CCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh
Confidence 455556676654 4467899 9999999999999999999999999999975 79999999999999999999999999
Q ss_pred CCCCcccEEeCCCCCC--CCcccccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccC-CcccccCc
Q psy8551 89 EPQEKLVELQLNHNKH--FPQQIVCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP-TPSFIYLG 163 (581)
Q Consensus 89 ~~l~~L~~L~l~~n~~--~~~~~~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~ 163 (581)
.++++|++|+|++|.+ ++...+..+ .+|+ +++.|.++.+++..|+++++|++|++++|.+..+. +..+..++
T Consensus 97 ~~L~~L~~L~Ls~N~l~~l~~~~f~~L---~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~ 173 (635)
T 4g8a_A 97 QSLSHLSTLILTGNPIQSLALGAFSGL---SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 173 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECGGGGTTC---TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred cCCCCCCEEEccCCcCCCCCHHHhcCC---CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch
Confidence 9999999999999975 222222222 2333 34444555554444555555555555555544332 12334445
Q ss_pred cCcEEECCCCcceeccCCcCCCCCC----CcEEEcCCCCccccCccccCCCCCCcEEECCCCcCC-ccCccc--------
Q psy8551 164 MLAELRVGLNVFTTLADGAFNGLGR----LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ-SIPTKQ-------- 230 (581)
Q Consensus 164 ~L~~L~L~~n~~~~~~~~~l~~l~~----L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~-------- 230 (581)
+|++|++++|.++++.+..+..+.+ ...++++.+.++.+.+..+. ...+..+++.+|... .+....
T Consensus 174 ~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~ 252 (635)
T 4g8a_A 174 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 252 (635)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCE
T ss_pred hhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccc
Confidence 5555555555554444333332222 22344444444433322111 111222222222111 000000
Q ss_pred -------------------------------------------------cCCCCCCCEEECCCCcccccCCcccCCCccc
Q psy8551 231 -------------------------------------------------LSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261 (581)
Q Consensus 231 -------------------------------------------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 261 (581)
+..+.+++.+.+..+.+..... +.....+
T Consensus 253 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L 330 (635)
T 4g8a_A 253 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGW 330 (635)
T ss_dssp EEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCC
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccchhh
Confidence 1111122222222222222111 2233445
Q ss_pred ceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCcc---ccccccCCCCcceEE
Q psy8551 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTS---FSESMLAWPELRTID 338 (581)
Q Consensus 262 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---~~~~~~~~~~L~~L~ 338 (581)
+.+++.++. +..+ ....+..|+.+.+..+. ..... ....+++|+.++++.|.+.. .+.......+|++++
T Consensus 331 ~~L~l~~~~-~~~~---~~~~l~~L~~l~l~~n~-~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 403 (635)
T 4g8a_A 331 QHLELVNCK-FGQF---PTLKLKSLKRLTFTSNK-GGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLD 403 (635)
T ss_dssp SEEEEESCE-ESSC---CCCBCTTCCEEEEESCC-SCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEE
T ss_pred hhhhccccc-ccCc---Ccccchhhhhccccccc-CCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhh
Confidence 555555432 1111 12234567777776662 33222 23456777777777777653 223444566777777
Q ss_pred ccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCC
Q psy8551 339 IAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 418 (581)
Q Consensus 339 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~ 418 (581)
+..+....... .......+....+... ..........|..++.++.++++.|.+.
T Consensus 404 ~~~~~~~~~~~------------------------~~~~l~~L~~l~l~~~-~~~~~~~~~~~~~l~~l~~l~ls~n~l~ 458 (635)
T 4g8a_A 404 LSFNGVITMSS------------------------NFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTR 458 (635)
T ss_dssp CCSCSEEEECS------------------------CCTTCTTCCEEECTTS-EEESTTSSCTTTTCTTCCEEECTTSCCE
T ss_pred ccccccccccc------------------------cccccccccchhhhhc-cccccccccccccccccccccccccccc
Confidence 77664321100 0001111111111000 0111223456777899999999999999
Q ss_pred ccChhhhcCCCCCcEeecCCCcc-eeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCC
Q psy8551 419 SIPTKQLSKLTRLEELEIGQNGF-SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED 497 (581)
Q Consensus 419 ~~~~~~l~~l~~L~~L~l~~~~i-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 497 (581)
...+..+..++.|+.|++++|.+ ....+..+..+++|++|++++ +.++.+.+..|.++++|++|++++| .+..+++.
T Consensus 459 ~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~-N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~ 536 (635)
T 4g8a_A 459 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTF 536 (635)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCG
T ss_pred cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC-CccCCcChHHHcCCCCCCEEECCCC-cCCCCChh
Confidence 88888899999999999999974 456788899999999999998 4899999999999999999999999 88889888
Q ss_pred ccCCCCCccEEEcCCCcceeec-cccccC-CcceEEecCCCcccccCchhHHHHHHhhcC-----CCceeeCCCcccccc
Q psy8551 498 ALVGLPNLYHLNLKENAFTSFS-ESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRN-----TSAVFCNSPAPLKYK 570 (581)
Q Consensus 498 ~~~~l~~L~~L~l~~n~l~~l~-~~~~~~-~~L~~L~l~~np~~c~c~~~~~~~~~~~~~-----~~~~~c~~~~~~~~~ 570 (581)
.+.++++|++|++++|+|++++ ..+..+ ++|++|++++|||.|+|+++||.+|+++.. ...++|+.|..++|+
T Consensus 537 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~ 616 (635)
T 4g8a_A 537 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 616 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTC
T ss_pred HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCC
Confidence 8999999999999999999875 456666 689999999999999999999999998743 345789999999999
Q ss_pred cccccCc
Q psy8551 571 SLISLSA 577 (581)
Q Consensus 571 ~~~~~~~ 577 (581)
+|.+++.
T Consensus 617 ~l~~~~~ 623 (635)
T 4g8a_A 617 PVLSLNI 623 (635)
T ss_dssp BGGGCCC
T ss_pred Eeeeecc
Confidence 9999853
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-49 Score=439.22 Aligned_cols=538 Identities=24% Similarity=0.295 Sum_probs=399.8
Q ss_pred CCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccc-cccccCCCcccEEEcCCC-ceeecCCCCCCCCCc
Q psy8551 16 PYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHT-TWLIIPIGGFEPQEK 93 (581)
Q Consensus 16 ~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l-~~~~~~~~~L~~L~ls~~-~l~~~~~~~~~~l~~ 93 (581)
.|++.. ..+.| ....++.||. +++++++|+|++|.|+.+ +..|.++++|++|++++| .+..+++.+|.++++
T Consensus 1 ~C~~~~---~~~dc--s~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~ 74 (844)
T 3j0a_A 1 SCSFDG---RIAFY--RFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74 (844)
T ss_dssp CCBTTT---EEEEE--SCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTT
T ss_pred CceEec---eEEEc--cCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCC
Confidence 367765 67888 9999999999 999999999999999987 468999999999999999 566787889999999
Q ss_pred ccEEeCCCCCCCCcccccccCCccccc--ccCcccccccch--hhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcEE
Q psy8551 94 LVELQLNHNKHFPQQIVCSIISPRRVE--IFGQNRISRIDQ--ACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAEL 168 (581)
Q Consensus 94 L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~~~l~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L 168 (581)
|++|++++|.+ ..-.+..+..+++|+ +++.|.+++..+ ..++++++|++|++++|.+..+.. ..+.++++|++|
T Consensus 75 L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 75 LRILDLGSSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp CCEEECTTCCC-CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCEEECCCCcC-cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 99999999986 222233445556777 777888887433 348899999999999999987754 468899999999
Q ss_pred ECCCCcceeccCCcCCCC--CCCcEEEcCCCCccccCccccCCCCC------CcEEECCCCcCCccCcc-----------
Q psy8551 169 RVGLNVFTTLADGAFNGL--GRLSALDLRGAGLTNISDNAFRGLSG------LRSLVLTDNRLQSIPTK----------- 229 (581)
Q Consensus 169 ~L~~n~~~~~~~~~l~~l--~~L~~L~L~~~~l~~~~~~~l~~~~~------L~~L~l~~n~l~~~~~~----------- 229 (581)
++++|.+++..+..+..+ ++|+.|++++|.+....+..+..+.+ |+.|++++|.++...+.
T Consensus 154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l 233 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233 (844)
T ss_dssp EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred ECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence 999999887766666655 77888888888777655555554444 78888887765422111
Q ss_pred -------------------------ccCC--CCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCC
Q psy8551 230 -------------------------QLSK--LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD 282 (581)
Q Consensus 230 -------------------------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 282 (581)
.+.. .++|++|++++|.+....+..+..+++|+.|++.+| .+..+.+..|..
T Consensus 234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~ 312 (844)
T 3j0a_A 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYG 312 (844)
T ss_dssp SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEECTTTTTT
T ss_pred cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCCChHHhcC
Confidence 1111 257888888888888777777888888888888875 566676777788
Q ss_pred CCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcC
Q psy8551 283 NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRN 361 (581)
Q Consensus 283 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 361 (581)
+++|++|++++| .++.+....+..+++|+.|++++|.+..+++ .+..+++|++|++++|.+........+..+....+
T Consensus 313 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 313 LDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN 391 (844)
T ss_dssp CSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESC
T ss_pred CCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCC
Confidence 888888888888 5666666678888888888888888876665 46677888888888887753222111100000000
Q ss_pred CCceeecCCCcccccccccCCccccccCCCCccccCc-cccCCCCCCCEEEcCCCcCCccChh-hhcCCCCCcEeecCCC
Q psy8551 362 TSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISD-NAFRGLSGLRSLVLTDNRLQSIPTK-QLSKLTRLEELEIGQN 439 (581)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~-~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~~ 439 (581)
... ..+.. ......+....+.+..+.. ..+.++++|+.|++++|.+++.++. .+..+++|++|++++|
T Consensus 392 ~l~---~l~~~-------~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 392 KLV---TLPKI-------NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp CCC---CCCCC-------CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred Ccc---ccccc-------ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence 000 00000 0111112222333333322 1234688999999999998865532 4566899999999999
Q ss_pred ccee-----eccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCc
Q psy8551 440 GFSM-----LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA 514 (581)
Q Consensus 440 ~i~~-----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 514 (581)
.+.. ..+..+..+++|+.|++++ +.++.+.+..|.++++|++|++++| .++.+++..+. ++|+.|++++|.
T Consensus 462 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~--~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 462 MLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP--ANLEILDISRNQ 537 (844)
T ss_dssp CCSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC--SCCCEEEEEEEC
T ss_pred ccccccccccchhhhcCcccccEEECCC-CcccccChhHccchhhhheeECCCC-CCCccChhhhh--ccccEEECCCCc
Confidence 8873 3445678899999999998 4788888888999999999999999 78888776665 899999999999
Q ss_pred ceeeccccccCCcceEEecCCCcccccCchhHHHHHHhhc------CCCceeeCCCcccccccccccCcc
Q psy8551 515 FTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR------NTSAVFCNSPAPLKYKSLISLSAE 578 (581)
Q Consensus 515 l~~l~~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~------~~~~~~c~~~~~~~~~~~~~~~~~ 578 (581)
++++++.. +++|+.+++++||+.|+|++.||.+|.... .+..+.|..|...+|.++.+++.+
T Consensus 538 l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~ 605 (844)
T 3j0a_A 538 LLAPNPDV--FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE 605 (844)
T ss_dssp CCCCCSCC--CSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCC
T ss_pred CCCCChhH--hCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCccc
Confidence 99876543 468999999999999999999999999763 345678999999999999887653
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-48 Score=410.70 Aligned_cols=511 Identities=21% Similarity=0.258 Sum_probs=310.9
Q ss_pred CCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCcc
Q psy8551 16 PYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKL 94 (581)
Q Consensus 16 ~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L 94 (581)
.|+|.. ....+.| .+.+++.+|..+++++++|+|++|.++.++. .|.++++|++|++++|.++.++..+|.++++|
T Consensus 2 ~c~~~~-~~~~~~c--~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L 78 (570)
T 2z63_A 2 PCVEVV-PNITYQC--MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78 (570)
T ss_dssp CSEEEE-TTTEEEC--CSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CccccC-CCcEEEe--CCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhC
Confidence 455544 3467899 9999999999999999999999999998865 79999999999999999999998999999999
Q ss_pred cEEeCCCCCCCCcccccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccC-CcccccCccCcEEECC
Q psy8551 95 VELQLNHNKHFPQQIVCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP-TPSFIYLGMLAELRVG 171 (581)
Q Consensus 95 ~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~L~ 171 (581)
++|++++|.+. .-....+...++|+ +++.|.++.++...++++++|++|++++|.+..+. +..+.++++|++|+++
T Consensus 79 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 79 STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp CEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred CEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 99999999741 11111222223333 34444555544444555555555555555554421 2244555555555555
Q ss_pred CCcceeccCCcCCCCCCC----cEEEcCCCCccccCccccCCCCCCcEEECCCCcCC-----------------------
Q psy8551 172 LNVFTTLADGAFNGLGRL----SALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ----------------------- 224 (581)
Q Consensus 172 ~n~~~~~~~~~l~~l~~L----~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~----------------------- 224 (581)
+|.++.+++..+..+++| +.+++++|.++.+.+..+... +|+.|++++|...
T Consensus 158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred CCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc
Confidence 555554444444444444 455555555554444433332 4444444443110
Q ss_pred --------ccCccccCCCC--CCCEEECCCC-cccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCC
Q psy8551 225 --------SIPTKQLSKLT--RLEELEIGQN-GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK 293 (581)
Q Consensus 225 --------~~~~~~~~~l~--~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 293 (581)
.++...+..++ .++.+++.++ .+....+..+..+++|+.+++.++. +..++. .+... +|++|++++
T Consensus 237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~-~~~~~-~L~~L~l~~ 313 (570)
T 2z63_A 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKD-FSYNF-GWQHLELVN 313 (570)
T ss_dssp CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCB-CCSCC-CCSEEEEES
T ss_pred ccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhh-hhccC-CccEEeecc
Confidence 00000000000 0000001000 1111112223334444444444431 222221 22223 444444444
Q ss_pred CCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCc-hhhHHHHHhhcCCCceeecCCCc
Q psy8551 294 NPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVRRNTSAVFCNSPAP 372 (581)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~ 372 (581)
| .+..++. ..+++|+.|++++|.+...... ..+++|++|++++|.+..... ..++
T Consensus 314 n-~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~------------------- 369 (570)
T 2z63_A 314 C-KFGQFPT---LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSD------------------- 369 (570)
T ss_dssp C-BCSSCCB---CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHH-------------------
T ss_pred C-cccccCc---ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccc-------------------
Confidence 4 2333332 2334444444444443322211 334455555555554431100 0000
Q ss_pred ccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccCh-hhhcCCCCCcEeecCCCcceeeccccccC
Q psy8551 373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEAGCFKG 451 (581)
Q Consensus 373 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~ 451 (581)
..+..+. .+....+.+..+... +.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus 370 ---~~~~~L~--~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 443 (570)
T 2z63_A 370 ---FGTTSLK--YLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443 (570)
T ss_dssp ---HTCSCCC--EEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred ---cccCccC--EEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence 0000111 111122223334444 7779999999999999987654 56889999999999999999999999999
Q ss_pred CccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-ccccCCcceE
Q psy8551 452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRT 530 (581)
Q Consensus 452 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~ 530 (581)
+++|++|++++|.......+..+..+++|++|++++| .+..+++..+..+++|++|++++|++++++. .+..+++|++
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 9999999999964332345578899999999999999 7777877889999999999999999998764 5778999999
Q ss_pred EecCCCcccccCchhHHH-HHHhhcCCCce---eeCCCc
Q psy8551 531 IDIAENPIECGCNILWLR-EMLVRRNTSAV---FCNSPA 565 (581)
Q Consensus 531 L~l~~np~~c~c~~~~~~-~~~~~~~~~~~---~c~~~~ 565 (581)
|++++||++|+|+..|+. +|.+....... .|+.|.
T Consensus 523 L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~~C~~~~ 561 (570)
T 2z63_A 523 IWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 561 (570)
T ss_dssp EECCSSCBCCCTTTTHHHHHHHHHTGGGEESCCBBTTTC
T ss_pred EEecCCcccCCCcchHHHHHHHHhccccCCCchhhCCCC
Confidence 999999999999998887 99887422211 798874
No 7
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-46 Score=396.83 Aligned_cols=501 Identities=17% Similarity=0.202 Sum_probs=333.9
Q ss_pred ccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCC--CCcc
Q psy8551 32 QEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKH--FPQQ 108 (581)
Q Consensus 32 ~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~--~~~~ 108 (581)
.+.+++.+|..+++++++|+|++|.++.++ ..|.++++|++|++++|.++.+++.+|..+++|++|++++|.+ .+..
T Consensus 13 ~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 13 RSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp TTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred CCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH
Confidence 888999999999999999999999999875 5899999999999999999999988999999999999999986 2222
Q ss_pred cccccCCccccc--ccCcccccccc-hhhcCCCCCCcEEeCCCCc-CcccCCcccccCccCcEEECCCCcceeccCCcCC
Q psy8551 109 IVCSIISPRRVE--IFGQNRISRID-QACFEGLTALRILYLDDNQ-LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184 (581)
Q Consensus 109 ~~~~~~~~~~L~--~l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~ 184 (581)
. +...++|+ +++.|.++.+. +..++++++|++|++++|. +..++...+..+++|++|++++|.+++..+..+.
T Consensus 93 ~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 93 W---FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp H---HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred H---hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 2 33345555 55666666542 3456677777777777776 5555555666777777777777777766666677
Q ss_pred CCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccC---ccccCCCCCCCEEECCCCcccccCC----cccCC
Q psy8551 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP---TKQLSKLTRLEELEIGQNGFSMLEA----GCFKG 257 (581)
Q Consensus 185 ~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~ 257 (581)
.+++|+.|+++++.+..++...+..+++|++|++++|++++.+ ......+++|+.|+++++.+..... ..+..
T Consensus 170 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~ 249 (549)
T 2z81_A 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249 (549)
T ss_dssp TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGG
T ss_pred ccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhh
Confidence 7777777777777665554444445677777777777776542 1223445677777777776553221 12344
Q ss_pred CcccceeeecCCCCce--ee---cCccCCCCCCCCEEeCCCCCCcccccc-----ccccCCCCCcEEecCCCCCcccccc
Q psy8551 258 LSYLKRLEITGASNLT--RV---RKGAFADNLNLETLTLNKNPKLKTIEE-----GALVGLPNLYHLNLKENAFTSFSES 327 (581)
Q Consensus 258 ~~~L~~L~l~~~~~~~--~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~l~~~~~~ 327 (581)
++.|+.+++.+|.... .+ ....+..+.+++.+.+.++. +..... ..+...++|+.+++++|.+..+|..
T Consensus 250 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~ 328 (549)
T 2z81_A 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328 (549)
T ss_dssp CTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHH
T ss_pred hccccccccccccccccccccccchhhhhhhcccccccccccc-cchhhhcccchhhhhhcccceEEEeccCccccCCHH
Confidence 5566666666553111 00 11123344555555555542 211110 0012234566666666666666654
Q ss_pred c-cCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCc--cccCCC
Q psy8551 328 M-LAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISD--NAFRGL 404 (581)
Q Consensus 328 ~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~--~~~~~~ 404 (581)
+ ..+++|++|++++|.+....+. .. . ....+..+.. +....+.+..+.. ..+..+
T Consensus 329 ~~~~l~~L~~L~Ls~N~l~~~~~~----~~---~-------------~~~~l~~L~~--L~Ls~N~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 329 FSQHLKSLEFLDLSENLMVEEYLK----NS---A-------------CKGAWPSLQT--LVLSQNHLRSMQKTGEILLTL 386 (549)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHH----HH---T-------------CTTSSTTCCE--EECTTSCCCCHHHHHHHGGGC
T ss_pred HHhcCccccEEEccCCcccccccc----ch---h-------------hhhccccCcE--EEccCCcccccccchhhhhcC
Confidence 4 2466666666666655421000 00 0 0000011111 1111222222221 346678
Q ss_pred CCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeee
Q psy8551 405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLT 484 (581)
Q Consensus 405 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~ 484 (581)
++|++|++++|+++.++ ..+..+++|++|++++|.++.++... .++|++|++++| .+++. ...+++|++|+
T Consensus 387 ~~L~~L~Ls~N~l~~lp-~~~~~~~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~Ls~N-~l~~~----~~~l~~L~~L~ 457 (549)
T 2z81_A 387 KNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNN-NLDSF----SLFLPRLQELY 457 (549)
T ss_dssp TTCCEEECTTCCCCCCC-SCCCCCTTCCEEECTTSCCSCCCTTS---CTTCSEEECCSS-CCSCC----CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCccCC-hhhcccccccEEECCCCCcccccchh---cCCceEEECCCC-Chhhh----cccCChhcEEE
Confidence 99999999999998776 56778899999999999988664432 368999999985 55544 35789999999
Q ss_pred CCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-ccccCCcceEEecCCCcccccCc-hhHHHHHHhhcC---CCce
Q psy8551 485 LNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCN-ILWLREMLVRRN---TSAV 559 (581)
Q Consensus 485 l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~np~~c~c~-~~~~~~~~~~~~---~~~~ 559 (581)
+++| .++.+|. ...+++|++|++++|+++++++ .+..+++|++|++++||+.|+|+ ..|+.+|.+... ...+
T Consensus 458 Ls~N-~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~~~~~~ 534 (549)
T 2z81_A 458 ISRN-KLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 534 (549)
T ss_dssp CCSS-CCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTTEESCC
T ss_pred CCCC-ccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhcccccCCCC
Confidence 9999 7788865 4679999999999999998765 47889999999999999999999 678889997753 3445
Q ss_pred eeCCCcccccccccc
Q psy8551 560 FCNSPAPLKYKSLIS 574 (581)
Q Consensus 560 ~c~~~~~~~~~~~~~ 574 (581)
.|..| |+++.+
T Consensus 535 ~C~~~----~~~~~~ 545 (549)
T 2z81_A 535 KCSGS----GKPVRS 545 (549)
T ss_dssp BBTTT----CCBGGG
T ss_pred eECCC----Ccchhh
Confidence 78877 466554
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.4e-45 Score=397.91 Aligned_cols=471 Identities=21% Similarity=0.184 Sum_probs=301.9
Q ss_pred CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCC--CCCCCCcccEEeCCCCCCCCccccccc-CCccccc--
Q psy8551 46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIG--GFEPQEKLVELQLNHNKHFPQQIVCSI-ISPRRVE-- 120 (581)
Q Consensus 46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~-- 120 (581)
+++.++++.+.+..+|..+.++++|++|+|++|.+++..+. .+.++++|++|++++|.+. ...+... ..+++|+
T Consensus 78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-FPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEE-CCSSCCSCCCCTTCSEE
T ss_pred cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccC-CcCCHHHhccCCCCCEE
Confidence 34444444444444445566666666666666665543323 4566666666666666431 1111111 2334444
Q ss_pred ccCcccccccchhh---cCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCC
Q psy8551 121 IFGQNRISRIDQAC---FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197 (581)
Q Consensus 121 ~l~~~~l~~~~~~~---l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~ 197 (581)
+++.|.+++..+.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+. +.++++|++|++++|
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence 45556665555544 5566666666666666554432 24566666666666666554443 566666666666666
Q ss_pred CccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCC-CcccceeeecCCCCceeec
Q psy8551 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG-LSYLKRLEITGASNLTRVR 276 (581)
Q Consensus 198 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~ 276 (581)
.+++..+..+..+++|++|++++|++++..+.. .+++|++|++++|.+.+..+..+.. +++|+.|++++| .+....
T Consensus 234 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~ 310 (768)
T 3rgz_A 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAV 310 (768)
T ss_dssp CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECC
T ss_pred cCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCcc
Confidence 666555555666666666666666665433221 5566666666666665433333333 366666666654 333344
Q ss_pred CccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCc-cccccccCCC-CcceEEccCCCCccCCchhhHH
Q psy8551 277 KGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT-SFSESMLAWP-ELRTIDIAENPIECGCNILWLR 354 (581)
Q Consensus 277 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~ 354 (581)
+..+..+++|++|++++|...+.++...+..+++|++|++++|.++ .+|..+..++ +|++|++++|.+.+..
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~------ 384 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI------ 384 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC------
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc------
Confidence 4455666666666666663333555444566666666666666665 4555555554 6666666666543211
Q ss_pred HHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEe
Q psy8551 355 EMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 434 (581)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 434 (581)
+.......... ...+....+.+.......+.++++|++|++++|.+++..+..+..+++|++|
T Consensus 385 ---------------~~~~~~~~~~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 385 ---------------LPNLCQNPKNT--LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp ---------------CTTTTCSTTCC--CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred ---------------ChhhhhcccCC--ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence 11111100111 2223334444554556678889999999999999998888899999999999
Q ss_pred ecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCc
Q psy8551 435 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA 514 (581)
Q Consensus 435 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 514 (581)
++++|.+.+..+..+..+++|++|++++| .+....+..+.++++|++|++++| .+....+.+++.+++|++|++++|+
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCC-ccCCcCChHHhcCCCCCEEECCCCc
Confidence 99999999988889999999999999984 666667788999999999999999 5554446789999999999999999
Q ss_pred ce-eeccccccCCcceEEecCCCcccccCchhHHH
Q psy8551 515 FT-SFSESMLAWPELRTIDIAENPIECGCNILWLR 548 (581)
Q Consensus 515 l~-~l~~~~~~~~~L~~L~l~~np~~c~c~~~~~~ 548 (581)
++ .+|..+..+++|++|++++|++++.++..++.
T Consensus 526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 98 68889999999999999999999999865543
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.6e-43 Score=382.02 Aligned_cols=410 Identities=19% Similarity=0.129 Sum_probs=215.9
Q ss_pred cCccEEEcccCCcc-cccc--cccCCCcccEEEcCCCceeecCCCC-CCCCCcccEEeCCCCCCC--CcccccccCCccc
Q psy8551 45 PSIQRLVLSTNRIK-TVDS--AIPIYLSLQHVDLSHTTWLIIPIGG-FEPQEKLVELQLNHNKHF--PQQIVCSIISPRR 118 (581)
Q Consensus 45 ~~l~~L~L~~~~i~-~l~~--~~~~~~~L~~L~ls~~~l~~~~~~~-~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~~ 118 (581)
+++++|+|++|.+. .+|. .+.++++|++|++++|.++...+.. +.++++|++|++++|.+. ....+..+...++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 79999999999997 4676 8999999999999999988544433 478999999999999862 1111111333445
Q ss_pred cc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCC
Q psy8551 119 VE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 196 (581)
Q Consensus 119 L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~ 196 (581)
|+ +++.|.+++..+ +..+++|++|++++|.+....+. +..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 180 L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp CCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred CCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence 55 455555554433 35566666666666666654443 56666666666666666654444566666666666666
Q ss_pred CCccccCccccCCCCCCcEEECCCCcCCccCccccCC-CCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceee
Q psy8551 197 AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK-LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV 275 (581)
Q Consensus 197 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 275 (581)
|.+++..+.. .+++|++|++++|++++..+..+.. +++|++|++++|.+....+..+..+++|+.|++++|.....+
T Consensus 257 n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 334 (768)
T 3rgz_A 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334 (768)
T ss_dssp SCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence 6555433321 4455555555555555222222322 355555555555555444444555555555555544322233
Q ss_pred cCccCCCCCC-------------------------CCEEeCCCCCCccccccccccC--CCCCcEEecCCCCCc-ccccc
Q psy8551 276 RKGAFADNLN-------------------------LETLTLNKNPKLKTIEEGALVG--LPNLYHLNLKENAFT-SFSES 327 (581)
Q Consensus 276 ~~~~~~~~~~-------------------------L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~l~-~~~~~ 327 (581)
+...+..+++ |++|++++|...+.++. .+.. +++|+.|++++|.++ .+|..
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~~ 413 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQNPKNTLQELYLQNNGFTGKIPPT 413 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTCSTTCCCCEEECCSSEEEEECCGG
T ss_pred CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhhcccCCccEEECCCCccccccCHH
Confidence 3333444444 44444444422112221 1222 455666666666665 44556
Q ss_pred ccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecC--CCcccccccccCCccccccCCCCccccCccccCCCC
Q psy8551 328 MLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNS--PAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLS 405 (581)
Q Consensus 328 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 405 (581)
+..+++|++|++++|.+.+..+..+ ..+..-.......+.. ..+........+.. +....+.+.......+.+++
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~--L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLET--LILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE--EECCSSCCCSCCCGGGGGCT
T ss_pred HhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceE--EEecCCcccCcCCHHHhcCC
Confidence 6666677777777766543222111 0000000000000000 00111111112221 11222333333334455566
Q ss_pred CCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCC
Q psy8551 406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 463 (581)
Q Consensus 406 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~ 463 (581)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 6666666666665554555556666666666666666555555555555555555543
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-41 Score=363.93 Aligned_cols=486 Identities=19% Similarity=0.255 Sum_probs=389.2
Q ss_pred ccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccc--ccCc
Q psy8551 47 IQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE--IFGQ 124 (581)
Q Consensus 47 l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~ 124 (581)
-+.++.++..++.+|..+. +++++|++++|.++.+++..|.++++|++|++++|.+ ..-.+..+..+++|+ +++.
T Consensus 14 ~~~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI-YWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC-CEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCCcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCcc-ceeChhhccCccccCeeeCCC
Confidence 4578889999999998664 4799999999999999888999999999999999986 222223445567777 7788
Q ss_pred ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD 204 (581)
Q Consensus 125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 204 (581)
|.++.+.+..|+++++|++|++++|.++.++...+..+++|++|++++|.+.++....+..+++|+.|++++|.++.+.+
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 99999999999999999999999999999877788999999999999999998765556679999999999999999988
Q ss_pred cccCCCCCCc--EEECCCCcCCccCccccCCC------------------------------------------------
Q psy8551 205 NAFRGLSGLR--SLVLTDNRLQSIPTKQLSKL------------------------------------------------ 234 (581)
Q Consensus 205 ~~l~~~~~L~--~L~l~~n~l~~~~~~~~~~l------------------------------------------------ 234 (581)
..+..+++|+ .|++++|.++++++..+...
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 8899999999 99999999998776554321
Q ss_pred ---CCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCC
Q psy8551 235 ---TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL 311 (581)
Q Consensus 235 ---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 311 (581)
.+|+++++++|.+..+++..+..+++|+.|+++++ .++.++. .+..+++|++|++++| .+..+++..+..+++|
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~-~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPS-GLVGLSTLKKLVLSAN-KFENLCQISASNFPSL 327 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCS-SCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTC
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCCh-hhcccccCCEEECccC-CcCcCchhhhhccCcC
Confidence 15778888888888888888999999999999997 4555544 5788899999999999 6777766678999999
Q ss_pred cEEecCCCCCc-cccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccC
Q psy8551 312 YHLNLKENAFT-SFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCA 389 (581)
Q Consensus 312 ~~L~l~~~~l~-~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 389 (581)
+.|++++|.+. .++. .+..+++|++|++++|.+...... +.....+..+.. +...
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------~~~~~~l~~L~~--L~l~ 384 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC---------------------NLQLRNLSHLQS--LNLS 384 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES---------------------TTTTTTCTTCCE--EECC
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc---------------------chhcccCCCCCE--EECC
Confidence 99999999887 5554 477899999999999987532100 001111222222 2233
Q ss_pred CCCccccCccccCCCCCCCEEEcCCCcCCccCh-hhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeE
Q psy8551 390 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTR 468 (581)
Q Consensus 390 ~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~ 468 (581)
.+.+..+....|..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.....
T Consensus 385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 464 (606)
T 3t6q_A 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464 (606)
T ss_dssp SCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG
T ss_pred CCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcc
Confidence 445566677788889999999999999987644 4588999999999999999998888899999999999999653321
Q ss_pred --ecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceee-ccccccCCcceEEecCCCcccccCchh
Q psy8551 469 --VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENPIECGCNIL 545 (581)
Q Consensus 469 --~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~np~~c~c~~~ 545 (581)
.....+..+++|++|++++| .+..+++..+.++++|++|++++|+++.+ |+.+..+++| +|++++|+++. ....
T Consensus 465 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~-~~~~ 541 (606)
T 3t6q_A 465 NIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI-ILPS 541 (606)
T ss_dssp EECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC-CCGG
T ss_pred ccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc-cCHh
Confidence 22356888999999999999 78888788899999999999999999864 5778889999 99999999984 3333
Q ss_pred HHHHHHhh----cCCCceeeCCC
Q psy8551 546 WLREMLVR----RNTSAVFCNSP 564 (581)
Q Consensus 546 ~~~~~~~~----~~~~~~~c~~~ 564 (581)
++..+..- -......|.++
T Consensus 542 ~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 542 LLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GHHHHHTSSEEECTTCCEECSGG
T ss_pred hcccCCCCCEEeCCCCCccccCC
Confidence 44443321 23334456655
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-44 Score=378.28 Aligned_cols=452 Identities=19% Similarity=0.210 Sum_probs=296.4
Q ss_pred CCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCC
Q psy8551 25 RDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK 103 (581)
Q Consensus 25 ~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~ 103 (581)
+.+.| ++..++.+|..+++++++|+|++|.++.++ ..|.++++|++|++++|+++.+++..|.++++|++|++++|.
T Consensus 3 ~~l~l--s~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDR--SKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEEC--TTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEec--CCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 56777 999999999999999999999999999887 589999999999999999999987889999999999999997
Q ss_pred CCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccC-CcccccCccCcEEECCCCcceeccCCc
Q psy8551 104 HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP-TPSFIYLGMLAELRVGLNVFTTLADGA 182 (581)
Q Consensus 104 ~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~L~~n~~~~~~~~~ 182 (581)
+ +.++.. .+++|++|++++|.++.++ +..++.+++|++|++++|.+++. .
T Consensus 81 l-----------------------~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~ 131 (520)
T 2z7x_B 81 L-----------------------VKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---S 131 (520)
T ss_dssp C-----------------------CEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---G
T ss_pred e-----------------------eecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---h
Confidence 5 222221 4555666666666555432 23455555666666655555431 2
Q ss_pred CCCCCCC--cEEEcCCCCc--cccCccccCCCC-CCcEEECCCCcCCc-cCccccCCCCCCCEEECCCCc-------ccc
Q psy8551 183 FNGLGRL--SALDLRGAGL--TNISDNAFRGLS-GLRSLVLTDNRLQS-IPTKQLSKLTRLEELEIGQNG-------FSM 249 (581)
Q Consensus 183 l~~l~~L--~~L~L~~~~l--~~~~~~~l~~~~-~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~~~-------~~~ 249 (581)
+..+++| +.|++++|.+ ....+..+..+. ....+++.+|.+.+ ++...+..+++|+.+++++|. +.+
T Consensus 132 ~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence 3444444 5556555555 333333333322 12234444444432 233334445555555555443 222
Q ss_pred cCCcccCCCcccceeee---------------------------cCCCCceeecCccC----CCCCCCCEEeCCCCCCcc
Q psy8551 250 LEAGCFKGLSYLKRLEI---------------------------TGASNLTRVRKGAF----ADNLNLETLTLNKNPKLK 298 (581)
Q Consensus 250 ~~~~~~~~~~~L~~L~l---------------------------~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~ 298 (581)
..+ .+..+++|+.|++ ++|.....++...+ ..+++|+.++++++. +
T Consensus 212 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~-~- 288 (520)
T 2z7x_B 212 ILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV-F- 288 (520)
T ss_dssp HHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC-C-
T ss_pred chh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc-e-
Confidence 111 2334444444444 44321111221111 334444444444442 2
Q ss_pred ccccccccCC---CCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccc
Q psy8551 299 TIEEGALVGL---PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 375 (581)
Q Consensus 299 ~~~~~~~~~~---~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 375 (581)
.++...+..+ .+|+.|++++|.+...+. ...+++|++|++++|.+.
T Consensus 289 ~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~------------------------------ 337 (520)
T 2z7x_B 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLT------------------------------ 337 (520)
T ss_dssp CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCC------------------------------
T ss_pred ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccC------------------------------
Confidence 2221112111 345555555554443221 134455555555555432
Q ss_pred cccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccC--hhhhcCCCCCcEeecCCCccee-eccccccCC
Q psy8551 376 KSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP--TKQLSKLTRLEELEIGQNGFSM-LEAGCFKGL 452 (581)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~~~i~~-~~~~~~~~~ 452 (581)
......+.++++|++|++++|.+++++ +..+..+++|++|++++|.+++ .+...+..+
T Consensus 338 -------------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 338 -------------------DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp -------------------TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred -------------------hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 223345677899999999999999743 3678999999999999999998 666668899
Q ss_pred ccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEE
Q psy8551 453 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTI 531 (581)
Q Consensus 453 ~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L 531 (581)
++|++|++++| .++...+..+. ++|++|++++| .++.+|.. +..+++|++|++++|+++.+|.. +..+++|++|
T Consensus 399 ~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 399 KSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQ-VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp TTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSS-CCCCCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCC-cccccchh-hhcCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence 99999999985 44443333332 69999999999 78888654 55999999999999999999976 7789999999
Q ss_pred ecCCCcccccCchhHH-HHHHhhcCC---CceeeCCCc
Q psy8551 532 DIAENPIECGCNILWL-REMLVRRNT---SAVFCNSPA 565 (581)
Q Consensus 532 ~l~~np~~c~c~~~~~-~~~~~~~~~---~~~~c~~~~ 565 (581)
++++||++|+|+++|+ ..|.++... ..+.|+.|.
T Consensus 474 ~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p~ 511 (520)
T 2z7x_B 474 WLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 511 (520)
T ss_dssp ECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTTC
T ss_pred ECcCCCCcccCCchHHHHHHHHhccccCCCCCCcCCcc
Confidence 9999999999999999 899977543 456799984
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-42 Score=358.37 Aligned_cols=420 Identities=21% Similarity=0.317 Sum_probs=282.3
Q ss_pred hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccc-cccccCCCcccEEEcCCCcee-ecCCCCC
Q psy8551 11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWL-IIPIGGF 88 (581)
Q Consensus 11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l-~~~~~~~~~L~~L~ls~~~l~-~~~~~~~ 88 (581)
.+||..|.|.. +.+.| .+.+++.+|. +++++++|+|++|.++.+ |..+.++++|++|++++|.+. .++...|
T Consensus 2 ~p~~~~c~~~~---~~~~c--~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~ 75 (455)
T 3v47_A 2 DPGTSECSVIG---YNAIC--INRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75 (455)
T ss_dssp -----CCEEET---TEEEC--CSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTT
T ss_pred CCccceeEEEc---cccCc--CCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccc
Confidence 36888999877 67999 9999999998 889999999999999987 567889999999999999875 6666778
Q ss_pred CCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCccc--CCcccccCccCc
Q psy8551 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSV--PTPSFIYLGMLA 166 (581)
Q Consensus 89 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~~~~L~ 166 (581)
.++++|++|++++|. ++.+.+..|+++++|++|++++|.+++. ....+..+++|+
T Consensus 76 ~~l~~L~~L~Ls~n~-----------------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 76 RGLSSLIILKLDYNQ-----------------------FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp TTCTTCCEEECTTCT-----------------------TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred cccccCCEEeCCCCc-----------------------cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 888888888888875 3444455677777777777777777652 222355556666
Q ss_pred EEECCCCcceeccCCc-CCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCC--CCCCEEECC
Q psy8551 167 ELRVGLNVFTTLADGA-FNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL--TRLEELEIG 243 (581)
Q Consensus 167 ~L~L~~n~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~ 243 (581)
+|++++|.++++.+.. +.++++|++|++++|.++...+ ..+..+ .+|+.++++
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE------------------------EDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT------------------------TTSGGGTTCEEEEEECT
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh------------------------hhhhccccccccccccc
Confidence 6666666555543332 4445555555555554444433 333332 355555565
Q ss_pred CCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCcccccccccc---CCCCCcEEecCCCC
Q psy8551 244 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALV---GLPNLYHLNLKENA 320 (581)
Q Consensus 244 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~ 320 (581)
+|.+.......+.. .....+...++|++|++++|...+..+. .+. ..++++.+++++|.
T Consensus 189 ~n~l~~~~~~~~~~-----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 189 SITLQDMNEYWLGW-----------------EKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TCBCTTCSTTCTTH-----------------HHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCEEEEECTTCT
T ss_pred cCcccccchhhccc-----------------cccccccccceeeeEecCCCcccccchh-hhhccccccceeeEeecccc
Confidence 55554433321110 0000011223344444444421111111 111 11344444444443
Q ss_pred CccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccc
Q psy8551 321 FTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNA 400 (581)
Q Consensus 321 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~ 400 (581)
.......... +.......
T Consensus 251 ~~~~~~~~~~--------------------------------------------------------------~~~~~~~~ 268 (455)
T 3v47_A 251 NMGSSFGHTN--------------------------------------------------------------FKDPDNFT 268 (455)
T ss_dssp TTSCCTTCCS--------------------------------------------------------------SCCCCTTT
T ss_pred ccccccchhh--------------------------------------------------------------hccCcccc
Confidence 2211000000 00000111
Q ss_pred cC--CCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCC
Q psy8551 401 FR--GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL 478 (581)
Q Consensus 401 ~~--~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 478 (581)
+. ..++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++ +.++.+.+..+.+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDSRMFENLD 347 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGGTTCT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCC-CccCCcChhHhcCcc
Confidence 11 146899999999999988888899999999999999999999888899999999999998 477888888899999
Q ss_pred CCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCc-hhHHHHHHhhcCC
Q psy8551 479 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCN-ILWLREMLVRRNT 556 (581)
Q Consensus 479 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~-~~~~~~~~~~~~~ 556 (581)
+|++|++++| .+..+++..+.++++|++|++++|+++.+|.. +..+++|++|++++||++|+|+ ..|+.+|.+....
T Consensus 348 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~ 426 (455)
T 3v47_A 348 KLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 426 (455)
T ss_dssp TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTTT
T ss_pred cCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHhCcc
Confidence 9999999999 77888788899999999999999999998864 5689999999999999999998 7899999987533
Q ss_pred ---CceeeCCCc
Q psy8551 557 ---SAVFCNSPA 565 (581)
Q Consensus 557 ---~~~~c~~~~ 565 (581)
....|..+.
T Consensus 427 ~~~~~~~c~~~~ 438 (455)
T 3v47_A 427 KEQGSAKCSGSG 438 (455)
T ss_dssp TEESCCBBTTTC
T ss_pred ceeeeeeecCCC
Confidence 334677654
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.4e-43 Score=370.31 Aligned_cols=475 Identities=19% Similarity=0.221 Sum_probs=312.6
Q ss_pred hhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCCC
Q psy8551 10 RSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGF 88 (581)
Q Consensus 10 ~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~~ 88 (581)
...++..|.|.. .+.+.| ++..++.+|..+++++++|+|++|.++.++ ..|.++++|++|++++|.++.+++.+|
T Consensus 21 ~~~~~~~~~~~~--~~~l~l--s~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 96 (562)
T 3a79_B 21 IVGSMTPFSNEL--ESMVDY--SNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF 96 (562)
T ss_dssp --------------CCEEEC--TTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT
T ss_pred HhccccccccCC--CcEEEc--CCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh
Confidence 344556666765 267888 999999999999999999999999999987 489999999999999999999988899
Q ss_pred CCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcE
Q psy8551 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAE 167 (581)
Q Consensus 89 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~ 167 (581)
.++++|++|++++|.+ +.++.. .+++|++|++++|.++.++. ..+.++++|++
T Consensus 97 ~~l~~L~~L~Ls~N~l-----------------------~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 97 LFNQDLEYLDVSHNRL-----------------------QNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150 (562)
T ss_dssp TTCTTCCEEECTTSCC-----------------------CEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred CCCCCCCEEECCCCcC-----------------------CccCcc---ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence 9999999999999975 222222 46667777777776666542 45666667777
Q ss_pred EECCCCcceeccCCcCCCCCCC--cEEEcCCCCc--cccCccccCCCC-CCcEEECCCCcCCc-cCccccCCCCCCCEEE
Q psy8551 168 LRVGLNVFTTLADGAFNGLGRL--SALDLRGAGL--TNISDNAFRGLS-GLRSLVLTDNRLQS-IPTKQLSKLTRLEELE 241 (581)
Q Consensus 168 L~L~~n~~~~~~~~~l~~l~~L--~~L~L~~~~l--~~~~~~~l~~~~-~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ 241 (581)
|++++|.++.. .+..+++| +.|++++|.+ +...+..+..+. ..-.+++.+|.+.. ++...+..+++|+.++
T Consensus 151 L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 227 (562)
T 3a79_B 151 LGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227 (562)
T ss_dssp EEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred EecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence 77776666542 23334444 6677766666 444444444332 11134455554443 2333344555555555
Q ss_pred CCCCcc-----cccCCcccCCCc---------------------------ccceeeecCCCCceeecCccC----CCCCC
Q psy8551 242 IGQNGF-----SMLEAGCFKGLS---------------------------YLKRLEITGASNLTRVRKGAF----ADNLN 285 (581)
Q Consensus 242 l~~~~~-----~~~~~~~~~~~~---------------------------~L~~L~l~~~~~~~~~~~~~~----~~~~~ 285 (581)
+++|.. .... ..+..++ +|+.|++++|.....++...+ ..++.
T Consensus 228 l~~n~~~~~~l~~~~-~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~ 306 (562)
T 3a79_B 228 IKLNDENCQRLMTFL-SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306 (562)
T ss_dssp EECCSTTHHHHHHHH-HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCE
T ss_pred ccccccccchHHHHH-HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchh
Confidence 555421 0000 1122233 455555554421112222211 22233
Q ss_pred CCEEeCCCCCCcccccccccc---CCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCC
Q psy8551 286 LETLTLNKNPKLKTIEEGALV---GLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNT 362 (581)
Q Consensus 286 L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 362 (581)
|+.+++..+. + .++...+. ...+++.|++++|.+..++. ...+++|++|++++|.+.
T Consensus 307 L~~~~~~~~~-~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~----------------- 366 (562)
T 3a79_B 307 LMIEHVKNQV-F-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFT----------------- 366 (562)
T ss_dssp EEEEEEEECC-C-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCC-----------------
T ss_pred eehhhcccce-e-ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccc-----------------
Confidence 3333333331 1 22211111 11346666666666553321 135566777777666553
Q ss_pred CceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccCh--hhhcCCCCCcEeecCCCc
Q psy8551 363 SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT--KQLSKLTRLEELEIGQNG 440 (581)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~~~ 440 (581)
......+.++++|++|++++|.+++++. ..+..+++|++|++++|.
T Consensus 367 --------------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 367 --------------------------------DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp --------------------------------TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred --------------------------------cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 2233456778999999999999998653 568899999999999999
Q ss_pred cee-eccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeec
Q psy8551 441 FSM-LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS 519 (581)
Q Consensus 441 i~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 519 (581)
+++ .+...+..+++|++|++++| .++...+..+. ++|++|++++| .++.+|... ..+++|++|++++|+++.+|
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~-~~l~~L~~L~L~~N~l~~l~ 489 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDV-THLQALQELNVASNQLKSVP 489 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTT-TSSCCCSEEECCSSCCCCCC
T ss_pred CCCccChhhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCC-cCcccChhh-cCCCCCCEEECCCCCCCCCC
Confidence 998 66667889999999999985 45443333332 69999999999 888887654 49999999999999999999
Q ss_pred cc-cccCCcceEEecCCCcccccCchhHHHH-HHhhcC-----------CCceeeCCCcccccccccccCccc
Q psy8551 520 ES-MLAWPELRTIDIAENPIECGCNILWLRE-MLVRRN-----------TSAVFCNSPAPLKYKSLISLSAED 579 (581)
Q Consensus 520 ~~-~~~~~~L~~L~l~~np~~c~c~~~~~~~-~~~~~~-----------~~~~~c~~~~~~~~~~~~~~~~~~ 579 (581)
.. +..+++|++|++++||+.|+|++.|+.+ |..... +..+.|.. +|+++.++...+
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~----~g~~l~~~~c~~ 558 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG----SGKPVRSIICPT 558 (562)
T ss_dssp TTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS----SCCCTTTCCCC-
T ss_pred HHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC----CCcEeeeecCCC
Confidence 87 7889999999999999999999999966 876532 34556776 899998886554
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.3e-41 Score=366.21 Aligned_cols=465 Identities=20% Similarity=0.276 Sum_probs=308.2
Q ss_pred cEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccc--ccCcc
Q psy8551 48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE--IFGQN 125 (581)
Q Consensus 48 ~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~~ 125 (581)
+.++.+++.++++|..+. +++++|++++|.++.++...|.++++|++|++++|.+. .-.+..+..+++|+ +++.|
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCC
Confidence 578999999999998664 79999999999999999888999999999999999862 11122233446666 77889
Q ss_pred cccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCcc
Q psy8551 126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN 205 (581)
Q Consensus 126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 205 (581)
.++.+++.+|+++++|++|++++|.+..+++..+..+++|++|++++|.+++.++..+.++++|+.|++++|.++...+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 99999988899999999999999999999888899999999999999999988888899999999999999999988776
Q ss_pred ccC--CCCCCcEEECCCCcCCccCccccCCC---------------------------CCCCEEECCCCcccccCCcccC
Q psy8551 206 AFR--GLSGLRSLVLTDNRLQSIPTKQLSKL---------------------------TRLEELEIGQNGFSMLEAGCFK 256 (581)
Q Consensus 206 ~l~--~~~~L~~L~l~~n~l~~~~~~~~~~l---------------------------~~L~~L~l~~~~~~~~~~~~~~ 256 (581)
.+. .+++|++|++++|+++++++..+..+ ++|++|++++|.+....+..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 554 45789999999998887765544433 3455555555555555555555
Q ss_pred CCcc--cceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecC-----------------
Q psy8551 257 GLSY--LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLK----------------- 317 (581)
Q Consensus 257 ~~~~--L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~----------------- 317 (581)
.++. |+.|++++| .+..+.+..+..+++|++|++++| .+..+.+..+..+++|+.|+++
T Consensus 244 ~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp GGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred ccCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCC-ccCccChhhhcCCCCccEEeccchhhhcccccccccccC
Confidence 5443 666666664 344555555566666666666666 3444433344555555555554
Q ss_pred ----------------CCCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCccccccccc
Q psy8551 318 ----------------ENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLIS 380 (581)
Q Consensus 318 ----------------~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (581)
+|.++.+++ .+..+++|++|++++|.+...... ...+.....
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~---------------------~~~f~~~~~ 380 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT---------------------NETFVSLAH 380 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEEC---------------------TTTTGGGTT
T ss_pred hhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcc---------------------hhhhccccc
Confidence 444443322 233444455555444432110000 000000000
Q ss_pred CCccccccCCCCccccCc-------------------------cccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEee
Q psy8551 381 LSAEDLGCAGAGLTNISD-------------------------NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 435 (581)
Q Consensus 381 l~~~~~~~~~~~~~~i~~-------------------------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 435 (581)
.....+....+.+..+.. ..|.++++|++|++++|.+.+..+..+..+++|++|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 011111122222333333 3444455555555555555544444555555555555
Q ss_pred cCCCcce--eeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecC--------CccCCCCCc
Q psy8551 436 IGQNGFS--MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE--------DALVGLPNL 505 (581)
Q Consensus 436 l~~~~i~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--------~~~~~l~~L 505 (581)
+++|.+. +..+..+..+++|+.|++++ +.++.+.+..|.++++|++|++++| .+..++. ..+.++++|
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSN-NNIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred hccccccccccCCcccccCCCCCEEECCC-CCCCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCC
Confidence 5555544 23445566677777777776 4566677777777888888888888 5555422 236778888
Q ss_pred cEEEcCCCcceeecc-ccccCCcceEEecCCCcccc
Q psy8551 506 YHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIEC 540 (581)
Q Consensus 506 ~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~np~~c 540 (581)
++|++++|+++.+|. .+..+++|++|++++|.++.
T Consensus 539 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc
Confidence 888888888888775 46778889999998888863
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-41 Score=361.34 Aligned_cols=456 Identities=23% Similarity=0.255 Sum_probs=364.8
Q ss_pred CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccc--ccC
Q psy8551 46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE--IFG 123 (581)
Q Consensus 46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~ 123 (581)
.-++++.++..++.+|..+. +++++|++++|.++.++...|.++++|++|++++|.+. .-.+..+...++|+ +++
T Consensus 12 ~~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 12 PNITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTTEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECT
T ss_pred CCCceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECC
Confidence 34679999999999998654 89999999999999999989999999999999999862 11122344556677 777
Q ss_pred cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceecc-CCcCCCCCCCcEEEcCCCCcccc
Q psy8551 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLSALDLRGAGLTNI 202 (581)
Q Consensus 124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~~~l~~~ 202 (581)
.|.++.+.+..|+++++|++|++++|.+..++...++.+++|++|++++|.+.++. +..+.++++|++|++++|.++.+
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 89999998888999999999999999999888778999999999999999988633 55788999999999999999988
Q ss_pred CccccCCCCCC----cEEECCCCcCCccCccccCCCCCCCEEECCCCcccc-----------------------------
Q psy8551 203 SDNAFRGLSGL----RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM----------------------------- 249 (581)
Q Consensus 203 ~~~~l~~~~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~----------------------------- 249 (581)
.+..+..+.+| .+|++++|.++.+++..+... +|++|++++|.+..
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 77666655544 489999999998887666554 89999998886531
Q ss_pred -----------------------------cCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCcccc
Q psy8551 250 -----------------------------LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTI 300 (581)
Q Consensus 250 -----------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 300 (581)
..+. +..+++|+.+++.++. +..++ .+..+++|+.|++++| .++.+
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~-~~~l~--~l~~~~~L~~L~l~~n-~l~~l 322 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVS-IKYLE--DVPKHFKWQSLSIIRC-QLKQF 322 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCC-CCCCC--CCCTTCCCSEEEEESC-CCSSC
T ss_pred cccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCcc-chhhh--hccccccCCEEEcccc-cCccc
Confidence 1111 4556788888888864 44454 6788899999999999 55888
Q ss_pred ccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCccccccccc
Q psy8551 301 EEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLIS 380 (581)
Q Consensus 301 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (581)
+. + .+++|+.|++++|...... .+..+++|++|++++|.+....... ........
T Consensus 323 p~--~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~---------------------~~~~~~~~ 377 (606)
T 3vq2_A 323 PT--L-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCS---------------------YSDLGTNS 377 (606)
T ss_dssp CC--C-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECC---------------------HHHHCCSC
T ss_pred cc--C-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchh---------------------hhhccCCc
Confidence 73 4 9999999999999544322 5668899999999999875321000 00111112
Q ss_pred CCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccCh-hhhcCCCCCcEeecCCCcceeeccccccCCccccEEe
Q psy8551 381 LSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 459 (581)
Q Consensus 381 l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 459 (581)
+.. +....+.+..++ ..|.++++|+.|++++|.+.+.++ ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 378 L~~--L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 378 LRH--LDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp CCE--EECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred ccE--eECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 222 222333445554 567889999999999999988776 6789999999999999999999999999999999999
Q ss_pred ecCCCCeeE-ecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceee-ccccccCCcceEEecCCCc
Q psy8551 460 ITGASNLTR-VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENP 537 (581)
Q Consensus 460 l~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~np 537 (581)
+++| .+.+ ..+..+.++++|++|++++| .+..+++..+.++++|++|++++|+++.+ |..+..+++|++|++++|+
T Consensus 455 l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 455 MAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp CTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 9986 4444 56778999999999999999 77778788899999999999999999976 7788899999999999999
Q ss_pred ccc
Q psy8551 538 IEC 540 (581)
Q Consensus 538 ~~c 540 (581)
++.
T Consensus 533 l~~ 535 (606)
T 3vq2_A 533 IET 535 (606)
T ss_dssp CCC
T ss_pred Ccc
Confidence 973
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=344.91 Aligned_cols=370 Identities=28% Similarity=0.398 Sum_probs=251.0
Q ss_pred hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCCCC
Q psy8551 11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFE 89 (581)
Q Consensus 11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~~~ 89 (581)
++||..|.|.. ..+.+.| .+.+++.+|..+++++++|+|++|.++.++ ..|.++++|++|+|++|.++.+.+..|.
T Consensus 1 ~~Cp~~C~C~~-~~~~v~c--~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 77 (477)
T 2id5_A 1 TGCPPRCECSA-QDRAVLC--HRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 77 (477)
T ss_dssp CCCSTTCEEET-TTTEEEC--CSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CcccCCCeECC-CCCEEEe--CCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh
Confidence 47999999976 4567999 999999999999999999999999999875 4788888999999988888888777777
Q ss_pred CCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEE
Q psy8551 90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 169 (581)
Q Consensus 90 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 169 (581)
++++|++|++++|. ++.++...|.++++|++|++++|.+..+....+..+
T Consensus 78 ~l~~L~~L~L~~n~-----------------------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l------- 127 (477)
T 2id5_A 78 NLFNLRTLGLRSNR-----------------------LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL------- 127 (477)
T ss_dssp TCTTCCEEECCSSC-----------------------CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC-------
T ss_pred CCccCCEEECCCCc-----------------------CCccCcccccCCCCCCEEECCCCccccCChhHcccc-------
Confidence 77777777777764 333344445555666666666555555444444444
Q ss_pred CCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccc
Q psy8551 170 VGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 249 (581)
Q Consensus 170 L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 249 (581)
++|+.|++++|.++.+.+..|..+++|++|++++|+++.++...+..+++|+.|++++|.+..
T Consensus 128 -----------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 128 -----------------YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp -----------------TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred -----------------ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 445555555554444444455555666666666666666665556666777777776665554
Q ss_pred cCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCcccccccc
Q psy8551 250 LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESML 329 (581)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 329 (581)
+....+..+++|+.|++ ++|...+.+ +....
T Consensus 191 ~~~~~~~~l~~L~~L~l-------------------------~~~~~~~~~------------------------~~~~~ 221 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEI-------------------------SHWPYLDTM------------------------TPNCL 221 (477)
T ss_dssp ECTTCSCSCTTCCEEEE-------------------------ECCTTCCEE------------------------CTTTT
T ss_pred eChhhcccCcccceeeC-------------------------CCCcccccc------------------------Ccccc
Confidence 43333333333333322 222111111 11100
Q ss_pred CCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCE
Q psy8551 330 AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRS 409 (581)
Q Consensus 330 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~ 409 (581)
. ..+|++
T Consensus 222 ~-------------------------------------------------------------------------~~~L~~ 228 (477)
T 2id5_A 222 Y-------------------------------------------------------------------------GLNLTS 228 (477)
T ss_dssp T-------------------------------------------------------------------------TCCCSE
T ss_pred c-------------------------------------------------------------------------CccccE
Confidence 0 124566
Q ss_pred EEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCC
Q psy8551 410 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 489 (581)
Q Consensus 410 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 489 (581)
|++++|.++.++...+..+++|++|++++|.++...+.. |.++++|++|++++|
T Consensus 229 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------------------------~~~l~~L~~L~L~~n- 282 (477)
T 2id5_A 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM-------------------------LHELLRLQEIQLVGG- 282 (477)
T ss_dssp EEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS-------------------------CTTCTTCCEEECCSS-
T ss_pred EECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh-------------------------ccccccCCEEECCCC-
Confidence 666666666666666777777777777777666554433 344555666666666
Q ss_pred CceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCchhHHHHHHhh--cCCCceeeCCCcc
Q psy8551 490 KLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCNILWLREMLVR--RNTSAVFCNSPAP 566 (581)
Q Consensus 490 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~--~~~~~~~c~~~~~ 566 (581)
.+..+.+..+.++++|++|++++|.++.++.. +..+++|++|++++||+.|+|++.|+.+|... .....+.|..|..
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGG
T ss_pred ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchH
Confidence 56666667788899999999999999988754 56789999999999999999999999887643 3445678999999
Q ss_pred cccccccccCcc
Q psy8551 567 LKYKSLISLSAE 578 (581)
Q Consensus 567 ~~~~~~~~~~~~ 578 (581)
++|+.+.+++..
T Consensus 363 ~~g~~l~~~~~~ 374 (477)
T 2id5_A 363 VQGKEFKDFPDV 374 (477)
T ss_dssp GTTCBGGGSCSS
T ss_pred HcCCchhhCccc
Confidence 999999887643
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=343.65 Aligned_cols=435 Identities=20% Similarity=0.274 Sum_probs=293.7
Q ss_pred CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcc
Q psy8551 46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQN 125 (581)
Q Consensus 46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~ 125 (581)
..+.++.++..++++|..+ .+++++|++++|.++.++...|.++++|++|++++|.+
T Consensus 8 ~~~~~~c~~~~l~~ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--------------------- 64 (570)
T 2z63_A 8 PNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--------------------- 64 (570)
T ss_dssp TTTEEECCSSCCSSCCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC---------------------
T ss_pred CCcEEEeCCCCccccCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcC---------------------
Confidence 3456888888999999754 36899999999999999988999999999999999864
Q ss_pred cccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccC-c
Q psy8551 126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS-D 204 (581)
Q Consensus 126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~-~ 204 (581)
+.+.+.+|+++++|++|++++|.++.+++..|..+++|++|++++|.++.++...+.++++|++|++++|.++.+. +
T Consensus 65 --~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp 142 (570)
T 2z63_A 65 --QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142 (570)
T ss_dssp --CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC
T ss_pred --CccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecCh
Confidence 3344444555666666666666665555555555666666666666655555444555666666666666555432 4
Q ss_pred cccCCCCCCcEEECCCCcCCccCccccCCCCCC----CEEECCCCcccccCCcccCCCcccceeeecCC-----------
Q psy8551 205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL----EELEIGQNGFSMLEAGCFKGLSYLKRLEITGA----------- 269 (581)
Q Consensus 205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~----------- 269 (581)
..+..+++|++|++++|+++.+++..++.+++| +++++++|.+..+.+..+... .|+.+++.++
T Consensus 143 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~ 221 (570)
T 2z63_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCI 221 (570)
T ss_dssp GGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHH
T ss_pred hhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhh
Confidence 445555666666666666655554445555555 556666665555555444433 4555554443
Q ss_pred ----------------------------------------------CCceeecCccCCCCCCCCEEeCCCCCCccccccc
Q psy8551 270 ----------------------------------------------SNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEG 303 (581)
Q Consensus 270 ----------------------------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 303 (581)
..+....+..+..+++|+.++++++ .+..++.
T Consensus 222 ~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~- 299 (570)
T 2z63_A 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKD- 299 (570)
T ss_dssp HTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECSCCB-
T ss_pred cCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchhhhh-
Confidence 1122222334445566666666666 4445544
Q ss_pred cccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCc
Q psy8551 304 ALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSA 383 (581)
Q Consensus 304 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 383 (581)
.+..+ +|++|++++|.+..+|. ..+++|+.|++++|.+.... ....+..+..
T Consensus 300 ~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~-------------------------~~~~~~~L~~ 351 (570)
T 2z63_A 300 FSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAF-------------------------SEVDLPSLEF 351 (570)
T ss_dssp CCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBC-------------------------CCCBCTTCCE
T ss_pred hhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccc-------------------------ccccCCCCCE
Confidence 34445 66666666666665554 34566667776666543110 0011222222
Q ss_pred cccccCCCCccccC--ccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeecc-ccccCCccccEEee
Q psy8551 384 EDLGCAGAGLTNIS--DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA-GCFKGLSYLKRLEI 460 (581)
Q Consensus 384 ~~~~~~~~~~~~i~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l 460 (581)
..+ ..+.+.... ...+.++++|++|++++|.+.+.++. +..+++|++|++++|.+.+..+ ..+..+++|++|++
T Consensus 352 L~l--~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 352 LDL--SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp EEC--CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred EeC--cCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 222 222233222 34567789999999999999888765 8899999999999999988755 56889999999999
Q ss_pred cCCCCeeEecCCccCCCCCCCeeeCCCCCCc-eeecCCccCCCCCccEEEcCCCcceee-ccccccCCcceEEecCCCcc
Q psy8551 461 TGASNLTRVRKGAFADNLNLETLTLNKNPKL-KIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENPI 538 (581)
Q Consensus 461 ~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~np~ 538 (581)
++| .+....+..+.++++|++|++++|... +.+ +..+..+++|++|++++|.++.+ |..+..+++|++|++++|++
T Consensus 429 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 429 SHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp TTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cCC-cccccchhhhhcCCcCcEEECcCCcCccccc-hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 985 677777888999999999999999433 245 47789999999999999999987 67888999999999999999
Q ss_pred ccc
Q psy8551 539 ECG 541 (581)
Q Consensus 539 ~c~ 541 (581)
+..
T Consensus 507 ~~~ 509 (570)
T 2z63_A 507 KSV 509 (570)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-39 Score=346.72 Aligned_cols=448 Identities=18% Similarity=0.212 Sum_probs=337.9
Q ss_pred CCCcccc---ccCCCccCCCCCCcCccEEEcccCCcc-cccccccCCCcccEEEcCCCceeecCCCCCC------C----
Q psy8551 25 RDPSCNL---QEANLDVIPSHSNPSIQRLVLSTNRIK-TVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE------P---- 90 (581)
Q Consensus 25 ~~~~c~~---~~~~l~~ip~~~~~~l~~L~L~~~~i~-~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~------~---- 90 (581)
....|.| .+..+.. ..+++.|+|+++.+. .+|..++++++|++|+|++|.+...+ ..+. .
T Consensus 63 ~~~~c~w~~~~GV~C~~-----~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~-~~~~~~~~~~~~~~~ 136 (636)
T 4eco_A 63 NKELDMWGAQPGVSLNS-----NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE-RLFGPKGISANMSDE 136 (636)
T ss_dssp SSCGGGTTCCTTEEECT-----TCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTC-CSBSTTSBCTTCCHH
T ss_pred CCCcccccCCCCeEEcC-----CCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCC-ccccccccccCchHH
Confidence 4566766 4444432 158999999999997 78889999999999999999752111 0111 0
Q ss_pred -CCcccEEeCCCCCCCCcccccccC----------------------Cccccc-ccCcccccccchhhcCCCCCCcEEeC
Q psy8551 91 -QEKLVELQLNHNKHFPQQIVCSII----------------------SPRRVE-IFGQNRISRIDQACFEGLTALRILYL 146 (581)
Q Consensus 91 -l~~L~~L~l~~n~~~~~~~~~~~~----------------------~~~~L~-~l~~~~l~~~~~~~l~~~~~L~~L~l 146 (581)
+.+|+ ++++.+.+ ....+..+. ..+.+. ....|.++++ +..++++++|++|++
T Consensus 137 ~~~~l~-l~l~~~~l-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~i-p~~l~~l~~L~~L~L 213 (636)
T 4eco_A 137 QKQKMR-MHYQKTFV-DYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYM 213 (636)
T ss_dssp HHHHHH-THHHHHHT-CCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE-CGGGGGCTTCCEEEE
T ss_pred HHHHHH-hhHHHhhh-ccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccC-CHHHhcccCCCEEEC
Confidence 12233 33333321 111111110 111111 1125678884 556999999999999
Q ss_pred CCCcCcc------------------cCCcccc--cCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCC-ccc-cCc
Q psy8551 147 DDNQLRS------------------VPTPSFI--YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG-LTN-ISD 204 (581)
Q Consensus 147 ~~~~i~~------------------~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~-l~~-~~~ 204 (581)
++|.+++ +|. .+. ++++|++|++++|.+.+..+..+.++++|++|++++|+ +++ ..+
T Consensus 214 s~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp 292 (636)
T 4eco_A 214 GNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292 (636)
T ss_dssp ESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH
T ss_pred cCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch
Confidence 9999998 665 677 89999999999999888777889999999999999998 886 455
Q ss_pred cccCCC------CCCcEEECCCCcCCccCc-cccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecC
Q psy8551 205 NAFRGL------SGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRK 277 (581)
Q Consensus 205 ~~l~~~------~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 277 (581)
..+..+ ++|++|++++|+++.+|. ..+..+++|++|++++|.+.+..+ .+..+++|+.|++++| .+..++.
T Consensus 293 ~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~ 370 (636)
T 4eco_A 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPA 370 (636)
T ss_dssp HHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCT
T ss_pred HHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccH
Confidence 555554 899999999999997774 278999999999999999994444 6888999999999987 3444443
Q ss_pred ccCCCCCC-CCEEeCCCCCCccccccccccCC--CCCcEEecCCCCCcc-cccccc-------CCCCcceEEccCCCCcc
Q psy8551 278 GAFADNLN-LETLTLNKNPKLKTIEEGALVGL--PNLYHLNLKENAFTS-FSESML-------AWPELRTIDIAENPIEC 346 (581)
Q Consensus 278 ~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~-~~~~~~-------~~~~L~~L~l~~~~~~~ 346 (581)
.+..+++ |++|++++| .++.++. .+... ++|+.|++++|.++. .|..+. ..++|++|++++|.+.
T Consensus 371 -~l~~l~~~L~~L~Ls~N-~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~- 446 (636)
T 4eco_A 371 -NFCGFTEQVENLSFAHN-KLKYIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS- 446 (636)
T ss_dssp -TSEEECTTCCEEECCSS-CCSSCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-
T ss_pred -hhhhhcccCcEEEccCC-cCcccch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-
Confidence 4777788 999999999 5667775 45554 489999999999885 444555 6679999999998764
Q ss_pred CCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhc
Q psy8551 347 GCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 426 (581)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 426 (581)
.++...+..+++|++|++++|.++.++...+.
T Consensus 447 ------------------------------------------------~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 478 (636)
T 4eco_A 447 ------------------------------------------------KFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478 (636)
T ss_dssp ------------------------------------------------SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE
T ss_pred ------------------------------------------------cCCHHHHccCCCCCEEECCCCCCCCcCHHHhc
Confidence 24445566789999999999999988765555
Q ss_pred CCC-------CCcEeecCCCcceeeccccc-cCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCC------CCCce
Q psy8551 427 KLT-------RLEELEIGQNGFSMLEAGCF-KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK------NPKLK 492 (581)
Q Consensus 427 ~l~-------~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~------~~~l~ 492 (581)
... +|++|++++|.++.++...+ ..+++|++|++++| .++. .+..+.++++|++|++++ |...+
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~ 556 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred cccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCC-cChhhhcCCCCCEEECCCCcccccCcccc
Confidence 443 99999999999996554333 38999999999995 5655 466778899999999954 53445
Q ss_pred eecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCccccc
Q psy8551 493 IIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 541 (581)
Q Consensus 493 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c~ 541 (581)
.+ +..+.++++|++|++++|.++.+|..+. ++|++|++++||+.|.
T Consensus 557 ~~-p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 557 EW-PEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CC-CTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred cC-hHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCccc
Confidence 55 5678899999999999999999998765 8999999999999873
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-39 Score=356.44 Aligned_cols=478 Identities=22% Similarity=0.242 Sum_probs=346.9
Q ss_pred cEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccc--ccCcc
Q psy8551 48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE--IFGQN 125 (581)
Q Consensus 48 ~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~~ 125 (581)
+..+.++++++.+|. ..++|++|||++|.++.+.+..|.++++|++|++++|.....-.+..+..+++|+ +++.|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 467889999999997 5689999999999999998889999999999999999642221133445567777 77889
Q ss_pred cccccchhhcCCCCCCcEEeCCCCcCcccCC--cccccCccCcEEECCCCcceeccC-CcCCCCCCCcEEEcCCCCcccc
Q psy8551 126 RISRIDQACFEGLTALRILYLDDNQLRSVPT--PSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNI 202 (581)
Q Consensus 126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~--~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~~~l~~~ 202 (581)
.++.+.+..|+++++|++|++++|.+++... ..+..+++|++|++++|.+.+... ..|.++++|+.|++++|.++..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 9999989999999999999999999986332 248889999999999999987654 4688999999999999999888
Q ss_pred CccccCCC--CCCcEEECCCCcCCccCccccCCCCC------CCEEECCCCcccccCCcc--------------------
Q psy8551 203 SDNAFRGL--SGLRSLVLTDNRLQSIPTKQLSKLTR------LEELEIGQNGFSMLEAGC-------------------- 254 (581)
Q Consensus 203 ~~~~l~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~------L~~L~l~~~~~~~~~~~~-------------------- 254 (581)
.+..+..+ ++|+.|++++|.+....+..+..+++ |++|++++|.+....+..
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 77777766 88999999999988755455555554 999999998665332211
Q ss_pred ----------------cCC--CcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEec
Q psy8551 255 ----------------FKG--LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNL 316 (581)
Q Consensus 255 ----------------~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 316 (581)
|.. .++|+.|+++++ .+..+.+..+..+++|+.|++++| .+..+....|..+++|+.|++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESC-CCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCC-cccccChhhhhcCCCCCEEECCCC-cCCCCChHHhcCCCCCCEEEC
Confidence 111 256888888775 456666777888888888888888 567776667888888888888
Q ss_pred CCCCCccc-cccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccc
Q psy8551 317 KENAFTSF-SESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTN 395 (581)
Q Consensus 317 ~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 395 (581)
++|.++.+ +..+..+++|++|++++|.+.......+ ..+ ..........-.-.......++. .+....+.+..
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l---~~L~~L~Ls~N~l~~i~~~~~L~--~L~l~~N~l~~ 395 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF-KFL---EKLQTLDLRDNALTTIHFIPSIP--DIFLSGNKLVT 395 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS-CSC---CCCCEEEEETCCSCCCSSCCSCS--EEEEESCCCCC
T ss_pred CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh-cCC---CCCCEEECCCCCCCcccCCCCcc--hhccCCCCccc
Confidence 88888766 4567788888888888887653221000 000 00000000000000000011111 11111222222
Q ss_pred cCccccCCCCCCCEEEcCCCcCCccCh-hhhcCCCCCcEeecCCCcceeeccc-cccCCccccEEeecCCCCee-----E
Q psy8551 396 ISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEAG-CFKGLSYLKRLEITGASNLT-----R 468 (581)
Q Consensus 396 i~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~~~~l~-----~ 468 (581)
++.. ...++.|++++|.+++... ..+..+++|++|++++|.+++..+. .+..+++|+.|++++| .++ .
T Consensus 396 l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~ 470 (844)
T 3j0a_A 396 LPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETE 470 (844)
T ss_dssp CCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSC
T ss_pred cccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC-ccccccccc
Confidence 2211 3457777777777776543 3356899999999999999876443 4567899999999985 443 3
Q ss_pred ecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCcccccCc
Q psy8551 469 VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN 543 (581)
Q Consensus 469 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c~c~ 543 (581)
..+..|.++++|++|++++| .+..+++..+.++++|++|++++|+++.++..... ++|+.|++++|+++..-+
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCS
T ss_pred cchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCCh
Confidence 34456888999999999999 88888888899999999999999999998866555 899999999999976544
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.4e-38 Score=339.90 Aligned_cols=434 Identities=20% Similarity=0.250 Sum_probs=313.1
Q ss_pred cCccEEEcccCCcc-cccccccCCCcccEEEc-CCCceeecCCCCCCCC----Cc--ccEEe------------------
Q psy8551 45 PSIQRLVLSTNRIK-TVDSAIPIYLSLQHVDL-SHTTWLIIPIGGFEPQ----EK--LVELQ------------------ 98 (581)
Q Consensus 45 ~~l~~L~L~~~~i~-~l~~~~~~~~~L~~L~l-s~~~l~~~~~~~~~~l----~~--L~~L~------------------ 98 (581)
.+++.|+|+++.+. .+|+.++++++|++|+| ++|.+....+...... .. ++.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 58999999999997 78889999999999999 8887664421110000 00 00000
Q ss_pred -----CCCCCCCCcccccccCCccccc-ccCcccccccchhhcCCCCCCcEEeCCCCcCcc------------------c
Q psy8551 99 -----LNHNKHFPQQIVCSIISPRRVE-IFGQNRISRIDQACFEGLTALRILYLDDNQLRS------------------V 154 (581)
Q Consensus 99 -----l~~n~~~~~~~~~~~~~~~~L~-~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~------------------~ 154 (581)
+..+................+. ....|.++.+ +..++++++|+.|++++|.+++ +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~I-P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccch-hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0000000000000001111111 1124677775 4568999999999999999988 6
Q ss_pred CCcccc--cCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCC-ccc-cCcccc-------CCCCCCcEEECCCCcC
Q psy8551 155 PTPSFI--YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG-LTN-ISDNAF-------RGLSGLRSLVLTDNRL 223 (581)
Q Consensus 155 ~~~~~~--~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~-l~~-~~~~~l-------~~~~~L~~L~l~~n~l 223 (581)
|. .++ ++++|++|+|++|.+.+..+..+.++++|+.|++++|+ +++ ..|..+ ..+++|+.|++++|++
T Consensus 482 P~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 482 NE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred Ch-hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 65 555 89999999999998887777788899999999999997 775 334333 3456999999999999
Q ss_pred CccCc-cccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCC-CCEEeCCCCCCccccc
Q psy8551 224 QSIPT-KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN-LETLTLNKNPKLKTIE 301 (581)
Q Consensus 224 ~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~ 301 (581)
+.+|. ..+..+++|++|++++|.+..++ .+..+++|+.|++++|. +..++. .+..+++ |+.|++++| .+..++
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~-l~~lp~-~l~~l~~~L~~L~Ls~N-~L~~lp 635 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQ-IEEIPE-DFCAFTDQVEGLGFSHN-KLKYIP 635 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSC-CSCCCT-TSCEECTTCCEEECCSS-CCCSCC
T ss_pred CccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCc-cccchH-HHhhccccCCEEECcCC-CCCcCc
Confidence 97774 26888999999999999988555 68888999999998874 444443 4677777 999999988 466776
Q ss_pred cccccCCC--CCcEEecCCCCCcccccccc------CCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcc
Q psy8551 302 EGALVGLP--NLYHLNLKENAFTSFSESML------AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPL 373 (581)
Q Consensus 302 ~~~~~~~~--~L~~L~l~~~~l~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 373 (581)
. .+...+ +|+.|++++|.+.+.++.+. ..++|+.|++++|.+.
T Consensus 636 ~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~---------------------------- 686 (876)
T 4ecn_A 636 N-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ---------------------------- 686 (876)
T ss_dssp S-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC----------------------------
T ss_pred h-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC----------------------------
Confidence 4 455554 48999999998875433222 3458889999888764
Q ss_pred cccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCC-------CCCcEeecCCCcceeecc
Q psy8551 374 KYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL-------TRLEELEIGQNGFSMLEA 446 (581)
Q Consensus 374 ~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l-------~~L~~L~l~~~~i~~~~~ 446 (581)
.++...+..+++|+.|++++|.++.++...+... ++|++|++++|.++.++
T Consensus 687 ---------------------~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp- 744 (876)
T 4ecn_A 687 ---------------------KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS- 744 (876)
T ss_dssp ---------------------SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC-
T ss_pred ---------------------ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccch-
Confidence 3444555668899999999999997776544433 38999999999999654
Q ss_pred cccc--CCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCC------CCCceeecCCccCCCCCccEEEcCCCcceee
Q psy8551 447 GCFK--GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK------NPKLKIIEEDALVGLPNLYHLNLKENAFTSF 518 (581)
Q Consensus 447 ~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l 518 (581)
..+. .+++|+.|++++| .+..+ +..+.++++|+.|++++ |...+.+ +..+.++++|++|++++|.++.+
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N-~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i-p~~l~~L~~L~~L~Ls~N~L~~I 821 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYN-CFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQW-PTGITTCPSLIQLQIGSNDIRKV 821 (876)
T ss_dssp GGGSTTTCTTCCEEECCSS-CCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCC-CTTGGGCSSCCEEECCSSCCCBC
T ss_pred HHhhhccCCCcCEEEeCCC-CCCcc-chhhhcCCCCCEEECCCCCCcccccccccC-hHHHhcCCCCCEEECCCCCCCcc
Confidence 4454 8999999999985 55554 56677899999999977 5334444 56788999999999999999999
Q ss_pred ccccccCCcceEEecCCCccccc
Q psy8551 519 SESMLAWPELRTIDIAENPIECG 541 (581)
Q Consensus 519 ~~~~~~~~~L~~L~l~~np~~c~ 541 (581)
|..+. ++|+.|++++||+...
T Consensus 822 p~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 822 DEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp CSCCC--SSSCEEECCSCTTCEE
T ss_pred CHhhc--CCCCEEECCCCCCCcc
Confidence 98765 7999999999999653
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.8e-37 Score=325.77 Aligned_cols=452 Identities=19% Similarity=0.255 Sum_probs=325.7
Q ss_pred EEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccc--ccCccc
Q psy8551 49 RLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE--IFGQNR 126 (581)
Q Consensus 49 ~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~~~ 126 (581)
..+.+++.++.+|..+. ++|++|++++|.++.+++..|.++++|++|++++|.+. .-....+...++|+ +++.|.
T Consensus 9 ~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSC
T ss_pred eEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCc
Confidence 35778999999998654 89999999999999998889999999999999999862 11112344456666 677888
Q ss_pred ccccchhhcCCCCCCcEEeCCCCcCcccC-CcccccCccCcEEECCCCc-ceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551 127 ISRIDQACFEGLTALRILYLDDNQLRSVP-TPSFIYLGMLAELRVGLNV-FTTLADGAFNGLGRLSALDLRGAGLTNISD 204 (581)
Q Consensus 127 l~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 204 (581)
++++.+..|+++++|++|++++|.++.++ ...+..+++|++|++++|. +..+++..+.++++|+.|++++|.++...+
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 88888888888888888888888887643 2367788888888888887 566666678888888888888888887777
Q ss_pred cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccC---CcccCCCcccceeeecCCCCceeec----C
Q psy8551 205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE---AGCFKGLSYLKRLEITGASNLTRVR----K 277 (581)
Q Consensus 205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~----~ 277 (581)
..+..+++|++|++++|.+..++...+..+++|++|++++|.+.... ......++.|+.|++.++. +.... .
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~ 244 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELL 244 (549)
T ss_dssp TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHHHH
T ss_pred hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc-cchhHHHHHH
Confidence 77888888888888888877766544556788888888888877652 2223456778888887753 22211 1
Q ss_pred ccCCCCCCCCEEeCCCCCCccccc------cccccCCCCCcEEecCCCCCcccc------ccccCCCCcceEEccCCCCc
Q psy8551 278 GAFADNLNLETLTLNKNPKLKTIE------EGALVGLPNLYHLNLKENAFTSFS------ESMLAWPELRTIDIAENPIE 345 (581)
Q Consensus 278 ~~~~~~~~L~~L~l~~~~~~~~~~------~~~~~~~~~L~~L~l~~~~l~~~~------~~~~~~~~L~~L~l~~~~~~ 345 (581)
..+..+.+|+.+++++| ....+. ...+..+++++.+++.++.+.... ..+...++|+.+++++|.+.
T Consensus 245 ~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~ 323 (549)
T 2z81_A 245 KLLRYILELSEVEFDDC-TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323 (549)
T ss_dssp GGGGGCTTCCEEEEESC-EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred HHhhhhccccccccccc-cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence 22345678888888887 333321 123456778888888888665432 11223568999999998765
Q ss_pred cCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccC---ccccCCCCCCCEEEcCCCcCCccCh
Q psy8551 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNIS---DNAFRGLSGLRSLVLTDNRLQSIPT 422 (581)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~---~~~~~~~~~L~~L~l~~n~l~~~~~ 422 (581)
.. +..+.. .+..+...++ ..+.+.... ...+..+++|++|++++|.+++++.
T Consensus 324 ~i-p~~~~~----------------------~l~~L~~L~L--s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 378 (549)
T 2z81_A 324 LV-PCSFSQ----------------------HLKSLEFLDL--SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378 (549)
T ss_dssp CC-CHHHHH----------------------HCTTCCEEEC--CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH
T ss_pred cC-CHHHHh----------------------cCccccEEEc--cCCccccccccchhhhhccccCcEEEccCCccccccc
Confidence 21 111100 1112222222 222222211 1235678999999999999988753
Q ss_pred --hhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccC
Q psy8551 423 --KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALV 500 (581)
Q Consensus 423 --~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 500 (581)
..+..+++|++|++++|.++.+ +..+..+++|++|++++| .++.+.... .++|++|++++| .+..++ .
T Consensus 379 ~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N-~l~~l~~~~---~~~L~~L~Ls~N-~l~~~~----~ 448 (549)
T 2z81_A 379 TGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSST-GIRVVKTCI---PQTLEVLDVSNN-NLDSFS----L 448 (549)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTS-CCSCCCTTS---CTTCSEEECCSS-CCSCCC----C
T ss_pred chhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCC-Ccccccchh---cCCceEEECCCC-Chhhhc----c
Confidence 5688999999999999999865 445778899999999985 455443322 258999999999 666553 5
Q ss_pred CCCCccEEEcCCCcceeeccccccCCcceEEecCCCccccc
Q psy8551 501 GLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 541 (581)
Q Consensus 501 ~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c~ 541 (581)
.+++|++|++++|+++.+|. ...+++|++|++++|+++..
T Consensus 449 ~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 449 FLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp CCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCC
T ss_pred cCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCc
Confidence 78999999999999999987 46789999999999999753
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.8e-38 Score=327.58 Aligned_cols=431 Identities=18% Similarity=0.199 Sum_probs=331.9
Q ss_pred cEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccc
Q psy8551 48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRI 127 (581)
Q Consensus 48 ~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l 127 (581)
++++++++.++.+|..+. ++|++|++++|.++.+++..|.++++|++|++++|. +
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----------------------l 57 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-----------------------I 57 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-----------------------C
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCc-----------------------c
Confidence 689999999999998765 899999999999999887789999999999999986 5
Q ss_pred cccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceecc-CCcCCCCCCCcEEEcCCCCccccCccc
Q psy8551 128 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLSALDLRGAGLTNISDNA 206 (581)
Q Consensus 128 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~ 206 (581)
+++.+..|+++++|++|++++|.++.++.. .+++|++|++++|.++++. +..+.++++|++|++++|.++. ..
T Consensus 58 ~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~ 131 (520)
T 2z7x_B 58 QYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS 131 (520)
T ss_dssp CEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG
T ss_pred CCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh
Confidence 666677899999999999999999988764 7999999999999998753 4578999999999999999876 34
Q ss_pred cCCCCCC--cEEECCCCcC--CccCccccCCCC-CCCEEECCCCcccc-cCCcccCCCcccceeeecCCCC------cee
Q psy8551 207 FRGLSGL--RSLVLTDNRL--QSIPTKQLSKLT-RLEELEIGQNGFSM-LEAGCFKGLSYLKRLEITGASN------LTR 274 (581)
Q Consensus 207 l~~~~~L--~~L~l~~n~l--~~~~~~~~~~l~-~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~------~~~ 274 (581)
+..+++| +.|++++|.+ ....+..+..+. +...+++++|.+.. +....+..++.|+.+++++|.. +..
T Consensus 132 ~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence 6667777 9999999998 655555666554 23466778877654 4455678899999999988641 111
Q ss_pred ecCccCCCCCCCCEEeCCCCCCcccc-ccccc--cCCCCCcEEecCCCCCc-cccccc-----cCCCCcceEEccCCCCc
Q psy8551 275 VRKGAFADNLNLETLTLNKNPKLKTI-EEGAL--VGLPNLYHLNLKENAFT-SFSESM-----LAWPELRTIDIAENPIE 345 (581)
Q Consensus 275 ~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~--~~~~~L~~L~l~~~~l~-~~~~~~-----~~~~~L~~L~l~~~~~~ 345 (581)
..+ .+..+++|+.+++.++. +... ..... ...++|++|++++|.++ .+|..+ ..++.|+.+++++|.+
T Consensus 212 ~~~-~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~- 288 (520)
T 2z7x_B 212 ILA-KLQTNPKLSNLTLNNIE-TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF- 288 (520)
T ss_dssp HHH-GGGGCTTCCEEEEEEEE-EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred chh-hhccccchhhccccccc-cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence 112 56778899999998873 3321 11111 12468999999999988 777777 7888999999998877
Q ss_pred cCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhh
Q psy8551 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQL 425 (581)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 425 (581)
..+..++.......... .+......+..+. .+..+++|++|++++|.+++..+..+
T Consensus 289 -~~p~~~~~~~~~~~~L~---------------------~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~ 344 (520)
T 2z7x_B 289 -GFPQSYIYEIFSNMNIK---------------------NFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC 344 (520)
T ss_dssp -CSCTHHHHHHHHTCCCS---------------------EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred -ecchhhhhcccccCcee---------------------EEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh
Confidence 22223333322111111 1111111222221 12568999999999999998777889
Q ss_pred cCCCCCcEeecCCCcceee--ccccccCCccccEEeecCCCCeeE-ecCCccCCCCCCCeeeCCCCCCceeecCCccCCC
Q psy8551 426 SKLTRLEELEIGQNGFSML--EAGCFKGLSYLKRLEITGASNLTR-VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGL 502 (581)
Q Consensus 426 ~~l~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l 502 (581)
..+++|++|++++|.++++ .+..+..+++|++|++++| .+.. ++...+..+++|++|++++|...+.++ ..+.
T Consensus 345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~-- 420 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-RCLP-- 420 (520)
T ss_dssp CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG-GSCC--
T ss_pred ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccCccCCEEECcCCCCCcchh-hhhc--
Confidence 9999999999999999974 3466889999999999985 5555 766678889999999999994434443 3332
Q ss_pred CCccEEEcCCCcceeeccccccCCcceEEecCCCcccc
Q psy8551 503 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC 540 (581)
Q Consensus 503 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c 540 (581)
++|++|++++|+++.+|..+..+++|++|++++|+++.
T Consensus 421 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 421 PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc
Confidence 79999999999999999988899999999999999984
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.3e-36 Score=322.26 Aligned_cols=399 Identities=16% Similarity=0.217 Sum_probs=283.5
Q ss_pred CCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcC--CCCCCcEEeCCCCcCccc
Q psy8551 77 HTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFE--GLTALRILYLDDNQLRSV 154 (581)
Q Consensus 77 ~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~--~~~~L~~L~l~~~~i~~~ 154 (581)
+|+++++| ..+.++++|++|++++|.+........... . ......+..+..++ ++++|++|++++|.+.+.
T Consensus 192 ~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~-----~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 192 SNNITFVS-KAVMRLTKLRQFYMGNSPFVAENICEAWEN-E-----NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp SCEEEEEC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSC-T-----TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred cCCCccCC-HHHhcccCCCEEECcCCccccccccccccc-c-----ccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 56788866 468899999999999988522111100000 0 00001111344466 788888888888887765
Q ss_pred CCcccccCccCcEEECCCCc-cee-ccCCcCCCC------CCCcEEEcCCCCccccCc-cccCCCCCCcEEECCCCcCC-
Q psy8551 155 PTPSFIYLGMLAELRVGLNV-FTT-LADGAFNGL------GRLSALDLRGAGLTNISD-NAFRGLSGLRSLVLTDNRLQ- 224 (581)
Q Consensus 155 ~~~~~~~~~~L~~L~L~~n~-~~~-~~~~~l~~l------~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~- 224 (581)
.+..+.++++|++|++++|. +++ ..+..+..+ ++|+.|++++|.++.++. ..+..+++|++|++++|+++
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG 344 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc
Confidence 55678888888888888887 775 333344443 788888888888885443 26788888888888888888
Q ss_pred ccCccccCCCCCCCEEECCCCcccccCCcccCCCcc-cceeeecCCCCceeecCccCCCC--CCCCEEeCCCCCCccccc
Q psy8551 225 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY-LKRLEITGASNLTRVRKGAFADN--LNLETLTLNKNPKLKTIE 301 (581)
Q Consensus 225 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~ 301 (581)
.++ .+..+++|++|++++|.+..++.. +..+++ |+.|++++|. +..++. .+... ++|+.|++++|. +....
T Consensus 345 ~ip--~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~-l~~lp~-~~~~~~l~~L~~L~Ls~N~-l~~~~ 418 (636)
T 4eco_A 345 KLP--AFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNK-LKYIPN-IFDAKSVSVMSAIDFSYNE-IGSVD 418 (636)
T ss_dssp ECC--CCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSC-CSSCCS-CCCTTCSSCEEEEECCSSC-TTTTT
T ss_pred chh--hhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCc-Ccccch-hhhhcccCccCEEECcCCc-CCCcc
Confidence 555 677788888888888888855443 777777 8888888864 444443 34443 378999999984 44433
Q ss_pred ccccc-------CCCCCcEEecCCCCCcccccccc-CCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcc
Q psy8551 302 EGALV-------GLPNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPL 373 (581)
Q Consensus 302 ~~~~~-------~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 373 (581)
+..+. .+++|+.|++++|.++.+|..+. .+++|++|++++|.+..
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~--------------------------- 471 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE--------------------------- 471 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB---------------------------
T ss_pred hhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC---------------------------
Confidence 33455 67799999999999998887544 58999999999987641
Q ss_pred cccccccCCccccccCCCCccccCccc-------cCCCCCCCEEEcCCCcCCccChhhhc--CCCCCcEeecCCCcceee
Q psy8551 374 KYKSLISLSAEDLGCAGAGLTNISDNA-------FRGLSGLRSLVLTDNRLQSIPTKQLS--KLTRLEELEIGQNGFSML 444 (581)
Q Consensus 374 ~~~~~~~l~~~~~~~~~~~~~~i~~~~-------~~~~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~~~i~~~ 444 (581)
++... +.++++|+.|++++|.++.++ ..+. .+++|++|++++|.+++
T Consensus 472 ----------------------i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 472 ----------------------IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS-DDFRATTLPYLVGIDLSYNSFSK- 527 (636)
T ss_dssp ----------------------CCSSSSEETTEECTTGGGCCEEECCSSCCCBCC-GGGSTTTCTTCCEEECCSSCCSS-
T ss_pred ----------------------cCHHHhccccccccccCCccEEECcCCcCCccC-hhhhhccCCCcCEEECCCCCCCC-
Confidence 11111 223458999999999999777 4554 89999999999999998
Q ss_pred ccccccCCccccEEeecCC-----CCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeec
Q psy8551 445 EAGCFKGLSYLKRLEITGA-----SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS 519 (581)
Q Consensus 445 ~~~~~~~~~~L~~L~l~~~-----~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 519 (581)
.+..+..+++|++|++++| +.+....+..+.++++|++|++++| .++.+|.. +. ++|++|++++|+++.++
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK-IT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CC--TTCCEEECCSCTTCEEE
T ss_pred cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh-Hh--CcCCEEECcCCCCcccc
Confidence 5667888999999999653 3455666778899999999999999 66888754 33 89999999999988655
Q ss_pred cc-c-c-cCCcceEEecCCCcccccCc
Q psy8551 520 ES-M-L-AWPELRTIDIAENPIECGCN 543 (581)
Q Consensus 520 ~~-~-~-~~~~L~~L~l~~np~~c~c~ 543 (581)
.. + . ....+..+.....+..++|+
T Consensus 604 ~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 604 LSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp CTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred HHhcchhhhcccceeecCCccccCCCc
Confidence 21 1 1 11334445555555556666
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-35 Score=320.85 Aligned_cols=400 Identities=16% Similarity=0.192 Sum_probs=297.5
Q ss_pred CceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcC--CCCCCcEEeCCCCcCcccC
Q psy8551 78 TTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFE--GLTALRILYLDDNQLRSVP 155 (581)
Q Consensus 78 ~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~--~~~~L~~L~l~~~~i~~~~ 155 (581)
|.++.+| ..+.++++|++|++++|.+....+..... ..+.+..+...+..++ ++++|++|++++|.+....
T Consensus 435 N~L~~IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~------~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i 507 (876)
T 4ecn_A 435 NRITFIS-KAIQRLTKLQIIYFANSPFTYDNIAVDWE------DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507 (876)
T ss_dssp CEEEEEC-GGGGGCTTCCEEEEESCCCCGGGBSSSCS------CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC
T ss_pred Ccccchh-HHHhcCCCCCEEECcCCcCCCCccccccc------ccccccccccCChhhhhccCCCCCEEECcCCCCCccC
Confidence 7788876 46999999999999999863322211110 0111223333455566 8999999999999877665
Q ss_pred CcccccCccCcEEECCCCc-cee-ccCC-------cCCCCCCCcEEEcCCCCccccCc-cccCCCCCCcEEECCCCcCCc
Q psy8551 156 TPSFIYLGMLAELRVGLNV-FTT-LADG-------AFNGLGRLSALDLRGAGLTNISD-NAFRGLSGLRSLVLTDNRLQS 225 (581)
Q Consensus 156 ~~~~~~~~~L~~L~L~~n~-~~~-~~~~-------~l~~l~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~ 225 (581)
+..+.++++|++|++++|. +++ ..+. .+..+++|+.|++++|.++.++. ..+..+++|+.|++++|+++.
T Consensus 508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~ 587 (876)
T 4ecn_A 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587 (876)
T ss_dssp CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB
T ss_pred hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc
Confidence 6688899999999999997 775 2222 34556699999999999985543 268889999999999999997
Q ss_pred cCccccCCCCCCCEEECCCCcccccCCcccCCCcc-cceeeecCCCCceeecCccCCCC--CCCCEEeCCCCCCcccccc
Q psy8551 226 IPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY-LKRLEITGASNLTRVRKGAFADN--LNLETLTLNKNPKLKTIEE 302 (581)
Q Consensus 226 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~ 302 (581)
+| .+..+++|++|++++|.+..++ ..+..+++ |+.|++++|. +..++ ..+... ++|+.|++++|...+.++.
T Consensus 588 lp--~~~~L~~L~~L~Ls~N~l~~lp-~~l~~l~~~L~~L~Ls~N~-L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 588 LE--AFGTNVKLTDLKLDYNQIEEIP-EDFCAFTDQVEGLGFSHNK-LKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp CC--CCCTTSEESEEECCSSCCSCCC-TTSCEECTTCCEEECCSSC-CCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred ch--hhcCCCcceEEECcCCccccch-HHHhhccccCCEEECcCCC-CCcCc-hhhhccccCCCCEEECcCCcCCCcccc
Confidence 77 6888999999999999988544 34778888 9999999875 44444 344444 3499999999954433332
Q ss_pred c--ccc--CCCCCcEEecCCCCCcccccccc-CCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccc
Q psy8551 303 G--ALV--GLPNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKS 377 (581)
Q Consensus 303 ~--~~~--~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 377 (581)
. .+. .+++|+.|++++|.++.+|..+. .+++|+.|++++|.+..
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~------------------------------- 711 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS------------------------------- 711 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC-------------------------------
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc-------------------------------
Confidence 1 122 44589999999999999887655 78999999999997641
Q ss_pred cccCCccccccCCCCccccCccc-------cCCCCCCCEEEcCCCcCCccChhhhc--CCCCCcEeecCCCcceeecccc
Q psy8551 378 LISLSAEDLGCAGAGLTNISDNA-------FRGLSGLRSLVLTDNRLQSIPTKQLS--KLTRLEELEIGQNGFSMLEAGC 448 (581)
Q Consensus 378 ~~~l~~~~~~~~~~~~~~i~~~~-------~~~~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~~~i~~~~~~~ 448 (581)
++... +.++++|+.|++++|.++.++ ..+. .+++|+.|++++|.++++ +..
T Consensus 712 ------------------ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp-~~l~~~~l~~L~~L~Ls~N~L~~l-p~~ 771 (876)
T 4ecn_A 712 ------------------IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-DDFRATTLPYLSNMDVSYNCFSSF-PTQ 771 (876)
T ss_dssp ------------------CCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC-GGGSTTTCTTCCEEECCSSCCSSC-CCG
T ss_pred ------------------cChHHhccccccccccCCccEEECCCCCCccch-HHhhhccCCCcCEEEeCCCCCCcc-chh
Confidence 11111 223458999999999999777 4555 899999999999999985 666
Q ss_pred ccCCccccEEeecCC-----CCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeec-ccc
Q psy8551 449 FKGLSYLKRLEITGA-----SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ESM 522 (581)
Q Consensus 449 ~~~~~~L~~L~l~~~-----~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~ 522 (581)
+..+++|+.|++++| +.+....+..+.++++|++|++++| .++.+|.. +. ++|+.|+|++|++..+. ..+
T Consensus 772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CC--SSSCEEECCSCTTCEEECGGG
T ss_pred hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hc--CCCCEEECCCCCCCccChHHc
Confidence 889999999999873 3455666778899999999999999 66888755 33 69999999999998765 333
Q ss_pred ccCCcceEEecCCCcccc--cCch
Q psy8551 523 LAWPELRTIDIAENPIEC--GCNI 544 (581)
Q Consensus 523 ~~~~~L~~L~l~~np~~c--~c~~ 544 (581)
.....+..+.+.+|++.+ +|+.
T Consensus 848 ~~~~~~~~~~L~~n~~~~I~gC~~ 871 (876)
T 4ecn_A 848 CPYIEAGMYVLLYDKTQDIRGCDA 871 (876)
T ss_dssp HHHHHTTCCEEECCTTSEEESCGG
T ss_pred cccccchheeecCCCccccCCCCC
Confidence 333455667777777765 7764
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.7e-34 Score=308.86 Aligned_cols=456 Identities=23% Similarity=0.267 Sum_probs=288.6
Q ss_pred cEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCC--CCcccccccCCccccc--ccC
Q psy8551 48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKH--FPQQIVCSIISPRRVE--IFG 123 (581)
Q Consensus 48 ~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~--~~~~~~~~~~~~~~L~--~l~ 123 (581)
...+-++-+++.+|..+. +++++|||++|+|+.++..+|.++++|++|++++|.+ +++.++.. +++|+ +|+
T Consensus 34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~---L~~L~~L~Ls 108 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS---LSHLSTLILT 108 (635)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT---CTTCCEEECT
T ss_pred CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC---CCCCCEEEcc
Confidence 345677778889997553 5899999999999999999999999999999999975 22222222 23333 444
Q ss_pred cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceecc-CCcCCCCCCCcEEEcCCCCcccc
Q psy8551 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLSALDLRGAGLTNI 202 (581)
Q Consensus 124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~~~l~~~ 202 (581)
.|.++.+++..|+++++|++|++++|+++.++...|+++++|++|++++|.++.+. +..+..+++|++|++++|+++.+
T Consensus 109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 55555555555555555555555555555555444555555555555555554332 22344455555555555555544
Q ss_pred CccccCCCC----CCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccc-cCCcccCCCc------------------
Q psy8551 203 SDNAFRGLS----GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM-LEAGCFKGLS------------------ 259 (581)
Q Consensus 203 ~~~~l~~~~----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~------------------ 259 (581)
.+..+..+. ....++++.|.++.+++..+.. ..++.+++.+|.... .....+..+.
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 444333222 1224455555555444332222 223344443332110 0000000111
Q ss_pred ---------------------------------------ccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCcccc
Q psy8551 260 ---------------------------------------YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTI 300 (581)
Q Consensus 260 ---------------------------------------~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 300 (581)
.++.+.+.++. + .....+....+++.+++.++ .+..+
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~--~~~~~~~~~~~L~~L~l~~~-~~~~~ 343 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-I--ERVKDFSYNFGWQHLELVNC-KFGQF 343 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-E--EECGGGGSCCCCSEEEEESC-EESSC
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-c--ccccccccchhhhhhhcccc-cccCc
Confidence 11111111110 0 01112334567888888887 45554
Q ss_pred ccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCccccccccc
Q psy8551 301 EEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLIS 380 (581)
Q Consensus 301 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (581)
+. ..++.++.+++..+.....+. ...+++|+.+++++|.+........ .......
T Consensus 344 ~~---~~l~~L~~l~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~---------------------~~~~~~~ 398 (635)
T 4g8a_A 344 PT---LKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQ---------------------SDFGTIS 398 (635)
T ss_dssp CC---CBCTTCCEEEEESCCSCCBCC-CCBCTTCCEEECCSSCCBEEEECCH---------------------HHHSCSC
T ss_pred Cc---ccchhhhhcccccccCCCCcc-cccccccccchhhcccccccccccc---------------------chhhhhh
Confidence 43 356788999999887765443 3468999999999997742211100 0000111
Q ss_pred CCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCcc-ChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEe
Q psy8551 381 LSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI-PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 459 (581)
Q Consensus 381 l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 459 (581)
+. .+.........+ ...+..++.|+.+++.++..... +...+..+++++.++++.|.+....+..+..+++|+.|+
T Consensus 399 L~--~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~ 475 (635)
T 4g8a_A 399 LK--YLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 475 (635)
T ss_dssp CC--EEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred hh--hhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence 11 111122222222 23466789999999998876543 335678899999999999999999999999999999999
Q ss_pred ecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-ccccCCcceEEecCCCcc
Q psy8551 460 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPI 538 (581)
Q Consensus 460 l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~np~ 538 (581)
+++|.....+.+..|..+++|++|++++| .+..+++..|.++++|++|+|++|+|++++. .+..+++|++|++++|++
T Consensus 476 Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 476 MAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred hhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC
Confidence 99987777777888999999999999999 8888888999999999999999999998864 577899999999999999
Q ss_pred cccC
Q psy8551 539 ECGC 542 (581)
Q Consensus 539 ~c~c 542 (581)
+..-
T Consensus 555 ~~~~ 558 (635)
T 4g8a_A 555 MTSK 558 (635)
T ss_dssp CBCC
T ss_pred CCCC
Confidence 7643
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.6e-35 Score=307.38 Aligned_cols=432 Identities=18% Similarity=0.174 Sum_probs=317.9
Q ss_pred CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcc
Q psy8551 46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQN 125 (581)
Q Consensus 46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~ 125 (581)
..+++++++++++.+|..+. ++|++|++++|.++.+++..|.++++|++|++++|.
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~---------------------- 87 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR---------------------- 87 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC----------------------
T ss_pred CCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCC----------------------
Confidence 44899999999999998654 899999999999999998889999999999999986
Q ss_pred cccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceecc-CCcCCCCCCCcEEEcCCCCccccCc
Q psy8551 126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLSALDLRGAGLTNISD 204 (581)
Q Consensus 126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~~~l~~~~~ 204 (581)
++.+.+.+|+++++|++|++++|.++.++.. .+++|++|++++|.+++++ +..+.++++|++|++++|.++...
T Consensus 88 -l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~- 162 (562)
T 3a79_B 88 -IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD- 162 (562)
T ss_dssp -CCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT-
T ss_pred -CCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc-
Confidence 5667777899999999999999999998874 7899999999999999865 357899999999999999887643
Q ss_pred cccCCCCCC--cEEECCCCcC--CccCccccCCCC-CCCEEECCCCcccc-cCCcccCCCcccceeeecCCCCc-eee--
Q psy8551 205 NAFRGLSGL--RSLVLTDNRL--QSIPTKQLSKLT-RLEELEIGQNGFSM-LEAGCFKGLSYLKRLEITGASNL-TRV-- 275 (581)
Q Consensus 205 ~~l~~~~~L--~~L~l~~n~l--~~~~~~~~~~l~-~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~-- 275 (581)
+..+++| +.|++++|.+ +...+..+..+. ..-.++++.|.+.. .....+..++.|+.+++.++... ..+
T Consensus 163 --~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~ 240 (562)
T 3a79_B 163 --LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT 240 (562)
T ss_dssp --TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH
T ss_pred --hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH
Confidence 4444555 9999999998 666656666544 12256777777664 33344667888999999876311 000
Q ss_pred cCccCCCCCCCCEEeCCCCCCccc-----cccccccCCCCCcEEecCCCCCc-cccccc-----cCCCCcceEEccCCCC
Q psy8551 276 RKGAFADNLNLETLTLNKNPKLKT-----IEEGALVGLPNLYHLNLKENAFT-SFSESM-----LAWPELRTIDIAENPI 344 (581)
Q Consensus 276 ~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~-----~~~~~L~~L~l~~~~~ 344 (581)
....+...++++.+++.++. +.. ++. ....++|++|++++|.++ .+|..+ ..++.|+.+++..+.+
T Consensus 241 ~~~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~ 317 (562)
T 3a79_B 241 FLSELTRGPTLLNVTLQHIE-TTWKCSVKLFQ--FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317 (562)
T ss_dssp HHHHHHSCSSCEEEEEEEEE-ECHHHHHHHHH--HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC
T ss_pred HHHHHhccCcceEEEecCCc-CcHHHHHHHHH--hhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee
Confidence 01234556677777776652 221 221 123358888888888887 666655 4555555555555554
Q ss_pred ccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhh
Q psy8551 345 ECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ 424 (581)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 424 (581)
..+..++........ ...+......+..+. ....+++|++|++++|.+++..+..
T Consensus 318 --~~p~~~~~~~~~~~~---------------------L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~ 372 (562)
T 3a79_B 318 --LFSKEALYSVFAEMN---------------------IKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQG 372 (562)
T ss_dssp --SSCHHHHHHHHHTCC---------------------CSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred --ecChhhhhhhhccCc---------------------ceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhh
Confidence 222233332221111 111111111111111 1256899999999999999877788
Q ss_pred hcCCCCCcEeecCCCcceeec--cccccCCccccEEeecCCCCeeE-ecCCccCCCCCCCeeeCCCCCCceeecCCccCC
Q psy8551 425 LSKLTRLEELEIGQNGFSMLE--AGCFKGLSYLKRLEITGASNLTR-VRKGAFADNLNLETLTLNKNPKLKIIEEDALVG 501 (581)
Q Consensus 425 l~~l~~L~~L~l~~~~i~~~~--~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 501 (581)
+..+++|++|++++|.+++.. +..+..+++|++|++++| .++. ++...+..+++|++|++++|...+.+ +..+.
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~- 449 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRCLP- 449 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-GSSCC-
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCcch-hhhhc-
Confidence 999999999999999999754 456889999999999995 4555 77777889999999999999433433 33232
Q ss_pred CCCccEEEcCCCcceeeccccccCCcceEEecCCCcccc
Q psy8551 502 LPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC 540 (581)
Q Consensus 502 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c 540 (581)
++|++|++++|+++.+|..+..+++|++|++++|+++.
T Consensus 450 -~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 450 -PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS 487 (562)
T ss_dssp -TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC
T ss_pred -CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC
Confidence 79999999999999999988899999999999999973
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1e-33 Score=284.88 Aligned_cols=339 Identities=19% Similarity=0.286 Sum_probs=252.2
Q ss_pred CCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEE
Q psy8551 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLV 217 (581)
Q Consensus 138 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 217 (581)
+++++.++++++.+..++...+..+++|++|++++|.++.+++..+..+++|++|++++|.++.+.+..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 57888999999888888887788888999999999988888877888888999999999888888887788888899999
Q ss_pred CCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCc
Q psy8551 218 LTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL 297 (581)
Q Consensus 218 l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 297 (581)
+++|+++.++...+..+++|++|++++|.+..+.+..+..+++|+.|++++| .+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--------------------------~l 177 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN--------------------------RL 177 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS--------------------------CC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC--------------------------cC
Confidence 9998888888777788888889998888887776666666666666666554 22
Q ss_pred cccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccc
Q psy8551 298 KTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKS 377 (581)
Q Consensus 298 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 377 (581)
+.++ +..+++|+.+++++|.++.++ ..+.|++|++++|.+..
T Consensus 178 ~~~~---~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~------------------------------- 219 (390)
T 3o6n_A 178 THVD---LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINV------------------------------- 219 (390)
T ss_dssp SBCC---GGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCE-------------------------------
T ss_pred Cccc---cccccccceeecccccccccC----CCCcceEEECCCCeeee-------------------------------
Confidence 2221 334455666666666555432 22456666666665431
Q ss_pred cccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccE
Q psy8551 378 LISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 457 (581)
Q Consensus 378 ~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~ 457 (581)
++. ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 220 ------------------~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 220 ------------------VRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp ------------------EEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred ------------------ccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 000 1135677777777777765 35777888888888888888777777888888888
Q ss_pred EeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCc
Q psy8551 458 LEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP 537 (581)
Q Consensus 458 L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np 537 (581)
|++++| .++.++ ..+..+++|++|++++| .+..+++ .+..+++|++|++++|.++.++ +..+++|++|++++||
T Consensus 277 L~L~~n-~l~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 277 LYISNN-RLVALN-LYGQPIPTLKVLDLSHN-HLLHVER-NQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp EECCSS-CCCEEE-CSSSCCTTCCEEECCSS-CCCCCGG-GHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred EECCCC-cCcccC-cccCCCCCCCEEECCCC-cceecCc-cccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCC
Confidence 888874 555553 33467889999999999 7777754 4678899999999999999886 6788999999999999
Q ss_pred ccccCchhHHHHHHhhc-CCCceeeCCCccccc
Q psy8551 538 IECGCNILWLREMLVRR-NTSAVFCNSPAPLKY 569 (581)
Q Consensus 538 ~~c~c~~~~~~~~~~~~-~~~~~~c~~~~~~~~ 569 (581)
+.|+|..+|+..|.+.. ......|..+....+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 383 (390)
T 3o6n_A 351 WDCNSLRALFRNVARPAVDDADQHCKIDYQLEH 383 (390)
T ss_dssp EEHHHHHHHTTTCCTTTBCCCCSCCCTTCEEET
T ss_pred ccchhHHHHHHHHHhhcccccCceecccccccc
Confidence 99998877777666543 333345776655444
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.2e-33 Score=287.75 Aligned_cols=348 Identities=27% Similarity=0.408 Sum_probs=250.7
Q ss_pred cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ 124 (581)
Q Consensus 45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~ 124 (581)
++++.|++.++.+..+|. +..+++|++|++++|.++.++. +..+++|++|++++|.+
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l-------------------- 102 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-------------------- 102 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC--------------------
T ss_pred ccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcc--------------------
Confidence 688888888888888875 7788888999998888888775 78888888888888753
Q ss_pred ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD 204 (581)
Q Consensus 125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 204 (581)
..+.+ ++++++|++|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|+.|+++ +.+....
T Consensus 103 ---~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~- 171 (466)
T 1o6v_A 103 ---ADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK- 171 (466)
T ss_dssp ---CCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG-
T ss_pred ---ccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch-
Confidence 33333 7788888888888888887754 777888888888888877664 37788888888885 3444333
Q ss_pred cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCC
Q psy8551 205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL 284 (581)
Q Consensus 205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 284 (581)
.+..+++|+.|++++|.++.++ .+..+++|++|++++|.+....+ +..++
T Consensus 172 -~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~------------------------- 221 (466)
T 1o6v_A 172 -PLANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP--LGILT------------------------- 221 (466)
T ss_dssp -GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCT-------------------------
T ss_pred -hhccCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc--ccccC-------------------------
Confidence 3677788888888888877764 36777788888888777665433 33344
Q ss_pred CCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCc
Q psy8551 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA 364 (581)
Q Consensus 285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~ 364 (581)
+|+.|++++| .+..++ .+..+++|+.|++++|.++.+++ +..+++|++|++++|.+..
T Consensus 222 ~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~------------------ 279 (466)
T 1o6v_A 222 NLDELSLNGN-QLKDIG--TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN------------------ 279 (466)
T ss_dssp TCCEEECCSS-CCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC------------------
T ss_pred CCCEEECCCC-Ccccch--hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCc------------------
Confidence 4555555555 333332 35666777777777777766554 5667777777777775531
Q ss_pred eeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceee
Q psy8551 365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML 444 (581)
Q Consensus 365 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~ 444 (581)
+. .+..+++|+.|++++|.+++.++ +..+++|++|++++|.+++.
T Consensus 280 -------------------------------~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 280 -------------------------------IS--PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp -------------------------------CG--GGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred -------------------------------cc--cccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence 11 14456778888888887777654 67788888888888887776
Q ss_pred ccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccc
Q psy8551 445 EAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES 521 (581)
Q Consensus 445 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~ 521 (581)
.+ +..+++|++|++++| .++.. ..+.++++|+.|++++| .+..+++ +..+++|++|++++|.++.+|..
T Consensus 325 ~~--~~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 325 SP--VSSLTKLQRLFFYNN-KVSDV--SSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp GG--GGGCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCEEEECCCBC
T ss_pred hh--hccCccCCEeECCCC-ccCCc--hhhccCCCCCEEeCCCC-ccCccch--hhcCCCCCEEeccCCcccCCchh
Confidence 55 667788888888775 45444 35778888999999988 5555544 78889999999999988876543
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-33 Score=298.32 Aligned_cols=120 Identities=23% Similarity=0.298 Sum_probs=84.2
Q ss_pred CCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCee
Q psy8551 404 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETL 483 (581)
Q Consensus 404 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L 483 (581)
+++|+.|++++|.+++..+..+..+++|++|++++|.+++++ ..+..+++|+.|
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--------------------------~~~~~l~~L~~L 306 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN--------------------------LYGQPIPTLKVL 306 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE--------------------------CSSSCCTTCCEE
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC--------------------------cccccCCCCcEE
Confidence 445555555555555544445555555555555555444332 223456788888
Q ss_pred eCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCcccccCchhHHHHHHhh
Q psy8551 484 TLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVR 553 (581)
Q Consensus 484 ~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~ 553 (581)
++++| .+..++ ..+..+++|++|++++|.++.++ +..+++|++|++++|||.|+|...|+..|...
T Consensus 307 ~Ls~N-~l~~i~-~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~ 372 (597)
T 3oja_B 307 DLSHN-HLLHVE-RNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARP 372 (597)
T ss_dssp ECCSS-CCCCCG-GGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTT
T ss_pred ECCCC-CCCccC-cccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhh
Confidence 88888 666775 44678999999999999999886 67789999999999999999987777666544
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.9e-33 Score=283.59 Aligned_cols=246 Identities=21% Similarity=0.266 Sum_probs=127.7
Q ss_pred cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcc-------------cEEeCCCCCCCCccccc
Q psy8551 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKL-------------VELQLNHNKHFPQQIVC 111 (581)
Q Consensus 45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L-------------~~L~l~~n~~~~~~~~~ 111 (581)
.++++|++++|.++.+|..++++++|++|++++|.+.+..+..+..+++| ++|++++|.+
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l------- 83 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL------- 83 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-------
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-------
Confidence 68999999999999999999999999999999999886556678888776 7777777653
Q ss_pred ccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcE
Q psy8551 112 SIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 191 (581)
Q Consensus 112 ~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 191 (581)
++++. -.++|++|++++|.+++++. ...+|++|++++|.+++++. + .++|++
T Consensus 84 ----------------~~lp~----~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~--~--~~~L~~ 135 (454)
T 1jl5_A 84 ----------------SSLPE----LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSD--L--PPLLEY 135 (454)
T ss_dssp ----------------SCCCS----CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCS--C--CTTCCE
T ss_pred ----------------ccCCC----CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccC--C--CCCCCE
Confidence 22221 12456666666666655443 12556666666665554332 1 145666
Q ss_pred EEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCC
Q psy8551 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN 271 (581)
Q Consensus 192 L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 271 (581)
|++++|.++.++ .+..+++|++|++++|++++++. . .++|++|++++|.+..++ .+..+++|+.|++++|.
T Consensus 136 L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~-~---~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~- 206 (454)
T 1jl5_A 136 LGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPD-L---PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNS- 206 (454)
T ss_dssp EECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCC-C---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSC-
T ss_pred EECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccCC-C---cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCc-
Confidence 666666655543 35556666666666666655542 1 135666666666655543 25556666666665542
Q ss_pred ceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCC
Q psy8551 272 LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344 (581)
Q Consensus 272 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 344 (581)
+..++.. ..+|++|++++| .+..++. +..+++|+.|++++|.++.+|.. .++|++|++++|.+
T Consensus 207 l~~l~~~----~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 207 LKKLPDL----PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYL 269 (454)
T ss_dssp CSSCCCC----CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCC
T ss_pred CCcCCCC----cCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcc
Confidence 2222211 135666666666 4445542 55666666666666666655542 25666666666654
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-32 Score=281.91 Aligned_cols=353 Identities=20% Similarity=0.301 Sum_probs=241.2
Q ss_pred cEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccc
Q psy8551 48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRI 127 (581)
Q Consensus 48 ~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l 127 (581)
+.++.+++.++.+|. -.++|++|++++|.++.+++..|.++++|++|++++|.+ .
T Consensus 13 ~~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~----------------------~ 67 (455)
T 3v47_A 13 YNAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP----------------------G 67 (455)
T ss_dssp TEEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST----------------------T
T ss_pred cccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc----------------------c
Confidence 356666777777765 226677777777777766666666666666666666542 1
Q ss_pred cccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc--c
Q psy8551 128 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD--N 205 (581)
Q Consensus 128 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~--~ 205 (581)
..+.+..|.++++ |++|++++|.++++.+..+.++++|++|++++|.+++..+ .
T Consensus 68 ~~i~~~~~~~l~~------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 123 (455)
T 3v47_A 68 LVIRNNTFRGLSS------------------------LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN 123 (455)
T ss_dssp CEECTTTTTTCTT------------------------CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSS
T ss_pred ceECccccccccc------------------------CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcc
Confidence 1222333444444 4555555555444444455555666666666665554222 2
Q ss_pred ccCCCCCCcEEECCCCcCCccCccc-cCCCCCCCEEECCCCcccccCCcccCCC--cccceeeecCCCCceeecCccCCC
Q psy8551 206 AFRGLSGLRSLVLTDNRLQSIPTKQ-LSKLTRLEELEIGQNGFSMLEAGCFKGL--SYLKRLEITGASNLTRVRKGAFAD 282 (581)
Q Consensus 206 ~l~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~ 282 (581)
.+..+++|++|++++|+++++.+.. +..+++|++|++++|.+....+..+..+ ..++.+
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L------------------ 185 (455)
T 3v47_A 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL------------------ 185 (455)
T ss_dssp TTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE------------------
T ss_pred cccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc------------------
Confidence 3667788888888888888775443 7888999999999998887666555433 334444
Q ss_pred CCCCCEEeCCCCCCccccccc--------cccCCCCCcEEecCCCCCcc-cccccc---CCCCcceEEccCCCCccCCch
Q psy8551 283 NLNLETLTLNKNPKLKTIEEG--------ALVGLPNLYHLNLKENAFTS-FSESML---AWPELRTIDIAENPIECGCNI 350 (581)
Q Consensus 283 ~~~L~~L~l~~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~l~~-~~~~~~---~~~~L~~L~l~~~~~~~~~~~ 350 (581)
+++++ .+..++.. .+..+++|+.|++++|.++. .+..+. ..++++.+++++|.....
T Consensus 186 -------~l~~n-~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--- 254 (455)
T 3v47_A 186 -------RLSSI-TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS--- 254 (455)
T ss_dssp -------ECTTC-BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC---
T ss_pred -------ccccC-cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc---
Confidence 44444 23332221 23456788888888888773 333332 236778888777643210
Q ss_pred hhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhc--CC
Q psy8551 351 LWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS--KL 428 (581)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~l 428 (581)
.+..+.+.......+. ..
T Consensus 255 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 274 (455)
T 3v47_A 255 ------------------------------------------------------------SFGHTNFKDPDNFTFKGLEA 274 (455)
T ss_dssp ------------------------------------------------------------CTTCCSSCCCCTTTTGGGTT
T ss_pred ------------------------------------------------------------ccchhhhccCcccccccccc
Confidence 0111122222222222 34
Q ss_pred CCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEE
Q psy8551 429 TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 508 (581)
Q Consensus 429 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 508 (581)
++|++|++++|.+.+..+..+..+++|++|++++ +.+..+.+..|.++++|++|++++| .++.+++..+.++++|++|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCC-CcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEE
Confidence 7899999999999999999999999999999998 5788888889999999999999999 7888878889999999999
Q ss_pred EcCCCcceee-ccccccCCcceEEecCCCcccc
Q psy8551 509 NLKENAFTSF-SESMLAWPELRTIDIAENPIEC 540 (581)
Q Consensus 509 ~l~~n~l~~l-~~~~~~~~~L~~L~l~~np~~c 540 (581)
++++|.++.+ |..+..+++|++|++++|+++.
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ECCCCcccccChhhccccccccEEECCCCcccc
Confidence 9999999987 6778899999999999999975
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-32 Score=282.24 Aligned_cols=346 Identities=24% Similarity=0.371 Sum_probs=272.8
Q ss_pred CCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEe
Q psy8551 66 IYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILY 145 (581)
Q Consensus 66 ~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~ 145 (581)
.++++++|+++++.++.++ .+..+++|++|++++|.+ +.+++ ++++++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l-----------------------~~~~~--~~~l~~L~~L~ 96 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQL-----------------------TDITP--LKNLTKLVDIL 96 (466)
T ss_dssp HHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCC-----------------------CCCGG--GTTCTTCCEEE
T ss_pred HhccccEEecCCCCCccCc--chhhhcCCCEEECCCCcc-----------------------CCchh--hhccccCCEEE
Confidence 4678889999988888776 377788888888888753 33333 67788888888
Q ss_pred CCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCc
Q psy8551 146 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQS 225 (581)
Q Consensus 146 l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 225 (581)
+++|.+..++. +..+++|++|++++|.++++++ +..+++|++|++++|.+..+. .+..+++|++|++. +.+..
T Consensus 97 l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~ 169 (466)
T 1o6v_A 97 MNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTD 169 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCC
T ss_pred CCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccC
Confidence 88888887764 7778888888888888777654 777888888888888777654 36777788888875 34444
Q ss_pred cCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccc
Q psy8551 226 IPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGAL 305 (581)
Q Consensus 226 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 305 (581)
++ .+..+++|++|++++|.+..+. .+..+++|++|++++| .+..+.. +
T Consensus 170 ~~--~~~~l~~L~~L~l~~n~l~~~~---------------------------~l~~l~~L~~L~l~~n-~l~~~~~--~ 217 (466)
T 1o6v_A 170 LK--PLANLTTLERLDISSNKVSDIS---------------------------VLAKLTNLESLIATNN-QISDITP--L 217 (466)
T ss_dssp CG--GGTTCTTCCEEECCSSCCCCCG---------------------------GGGGCTTCSEEECCSS-CCCCCGG--G
T ss_pred ch--hhccCCCCCEEECcCCcCCCCh---------------------------hhccCCCCCEEEecCC-ccccccc--c
Confidence 43 2667777777777777654321 1344567777777777 4555543 6
Q ss_pred cCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccc
Q psy8551 306 VGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAED 385 (581)
Q Consensus 306 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (581)
+.+++|+.|++++|.++.++ .+..+++|++|++++|.+..
T Consensus 218 ~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~--------------------------------------- 257 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISN--------------------------------------- 257 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC---------------------------------------
T ss_pred cccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCcccc---------------------------------------
Confidence 77899999999999998874 57788999999999997642
Q ss_pred cccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCC
Q psy8551 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN 465 (581)
Q Consensus 386 ~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~ 465 (581)
+. .+.++++|++|++++|.+++.++ +..+++|++|++++|.+++..+ +..+++|++|++++| .
T Consensus 258 ----------~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n-~ 320 (466)
T 1o6v_A 258 ----------LA--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN-N 320 (466)
T ss_dssp ----------CG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSS-C
T ss_pred ----------ch--hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCC-c
Confidence 11 15668999999999999998875 8899999999999999998765 788999999999996 5
Q ss_pred eeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCcccc
Q psy8551 466 LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC 540 (581)
Q Consensus 466 l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c 540 (581)
+.+..+ +..+++|++|++++| .+..++ .+.++++|++|++++|.++++++ +..+++|++|++++|+++.
T Consensus 321 l~~~~~--~~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 321 ISDISP--VSSLTKLQRLFFYNN-KVSDVS--SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSCCGG--GGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCCchh--hccCccCCEeECCCC-ccCCch--hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 655544 678999999999999 677663 58899999999999999998876 8889999999999999976
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.6e-31 Score=270.85 Aligned_cols=383 Identities=21% Similarity=0.237 Sum_probs=197.6
Q ss_pred ccCCCccCCCCCC--cCccEEEcccCCcc-cccccccCCCcc-------------cEEEcCCCceeecCCCCCCCCCccc
Q psy8551 32 QEANLDVIPSHSN--PSIQRLVLSTNRIK-TVDSAIPIYLSL-------------QHVDLSHTTWLIIPIGGFEPQEKLV 95 (581)
Q Consensus 32 ~~~~l~~ip~~~~--~~l~~L~L~~~~i~-~l~~~~~~~~~L-------------~~L~ls~~~l~~~~~~~~~~l~~L~ 95 (581)
++..++.+|..+. +++++|++++|.+. .+|..++.+++| ++|++++|.++.++.. .++|+
T Consensus 19 ~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~----~~~L~ 94 (454)
T 1jl5_A 19 HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL----PPHLE 94 (454)
T ss_dssp ---------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC----CTTCS
T ss_pred ccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC----cCCCC
Confidence 6677889997765 79999999999987 788888888875 9999999999988752 37899
Q ss_pred EEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcc
Q psy8551 96 ELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVF 175 (581)
Q Consensus 96 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~ 175 (581)
+|++++|.+ ++++. ..++|++|++++|.+++++.. .++|++|++++|.+
T Consensus 95 ~L~l~~n~l-----------------------~~lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 95 SLVASCNSL-----------------------TELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQL 143 (454)
T ss_dssp EEECCSSCC-----------------------SSCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCC
T ss_pred EEEccCCcC-----------------------Ccccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCC
Confidence 999999874 22111 125666777776666655431 25667777777766
Q ss_pred eeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCccc
Q psy8551 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255 (581)
Q Consensus 176 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 255 (581)
++++ .+.++++|++|++++|+++.++. ...+|++|++++|++++++ .+..+++|++|++++|.+..++..
T Consensus 144 ~~lp--~~~~l~~L~~L~l~~N~l~~lp~----~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~-- 213 (454)
T 1jl5_A 144 EKLP--ELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL-- 213 (454)
T ss_dssp SSCC--CCTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC--
T ss_pred CCCc--ccCCCCCCCEEECCCCcCcccCC----CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC--
Confidence 6644 36666777777777766665432 1246677777777666655 366667777777777666654321
Q ss_pred CCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcc
Q psy8551 256 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELR 335 (581)
Q Consensus 256 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~ 335 (581)
.++|+.|++++| .+..++ .+..+++|++|++++| .+..++. ..++|+.|++++|.++++|.. .++|+
T Consensus 214 --~~~L~~L~l~~n-~l~~lp--~~~~l~~L~~L~l~~N-~l~~l~~----~~~~L~~L~l~~N~l~~l~~~---~~~L~ 280 (454)
T 1jl5_A 214 --PLSLESIVAGNN-ILEELP--ELQNLPFLTTIYADNN-LLKTLPD----LPPSLEALNVRDNYLTDLPEL---PQSLT 280 (454)
T ss_dssp --CTTCCEEECCSS-CCSSCC--CCTTCTTCCEEECCSS-CCSSCCS----CCTTCCEEECCSSCCSCCCCC---CTTCC
T ss_pred --cCcccEEECcCC-cCCccc--ccCCCCCCCEEECCCC-cCCcccc----cccccCEEECCCCcccccCcc---cCcCC
Confidence 146667777665 333443 2556667777777766 4444443 235677777777777666543 25677
Q ss_pred eEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCC
Q psy8551 336 TIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDN 415 (581)
Q Consensus 336 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n 415 (581)
+|++++|.+.+. +. -.++|+.|++++|
T Consensus 281 ~L~ls~N~l~~l-------------------------------------------------~~----~~~~L~~L~l~~N 307 (454)
T 1jl5_A 281 FLDVSENIFSGL-------------------------------------------------SE----LPPNLYYLNASSN 307 (454)
T ss_dssp EEECCSSCCSEE-------------------------------------------------SC----CCTTCCEEECCSS
T ss_pred EEECcCCccCcc-------------------------------------------------cC----cCCcCCEEECcCC
Confidence 777777655310 00 0134555555555
Q ss_pred cCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeec
Q psy8551 416 RLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE 495 (581)
Q Consensus 416 ~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 495 (581)
.+++++. ..++|++|++++|.+++++. .+++|++|++++| .++.++. .+++|++|++++| .+..++
T Consensus 308 ~l~~i~~----~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N-~l~~lp~----~l~~L~~L~L~~N-~l~~l~ 373 (454)
T 1jl5_A 308 EIRSLCD----LPPSLEELNVSNNKLIELPA----LPPRLERLIASFN-HLAEVPE----LPQNLKQLHVEYN-PLREFP 373 (454)
T ss_dssp CCSEECC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCSSCC
T ss_pred cCCcccC----CcCcCCEEECCCCccccccc----cCCcCCEEECCCC-ccccccc----hhhhccEEECCCC-CCCcCC
Confidence 5554321 11355555555555554322 1355555555553 3333322 2445555555555 222211
Q ss_pred --CCccCCC-------------CCccEEEcCCCcceeeccccccCCcceEEecCCCcccccC
Q psy8551 496 --EDALVGL-------------PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGC 542 (581)
Q Consensus 496 --~~~~~~l-------------~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c~c 542 (581)
+.++..+ ++|++|++++|.+++++.. -++++.|.+.+|.+.|.-
T Consensus 374 ~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~~~~ 432 (454)
T 1jl5_A 374 DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVVDPY 432 (454)
T ss_dssp CCCTTCCEEECCC-------------------------------------------------
T ss_pred CChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccc---hhhHhheeCcCcccCCcc
Confidence 2233333 7899999999998865432 145778888888886643
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.5e-31 Score=264.92 Aligned_cols=262 Identities=19% Similarity=0.275 Sum_probs=199.8
Q ss_pred cCccEEEcccCCccccccc-ccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccC
Q psy8551 45 PSIQRLVLSTNRIKTVDSA-IPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFG 123 (581)
Q Consensus 45 ~~l~~L~L~~~~i~~l~~~-~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~ 123 (581)
+++++|+++++.++.+|.. +..+++|++|++++|.++.++...|..+++|++|++++|.
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------------- 104 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-------------------- 104 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--------------------
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC--------------------
Confidence 7899999999999999874 6889999999999999999998899999999999999986
Q ss_pred cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccC
Q psy8551 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203 (581)
Q Consensus 124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~ 203 (581)
++.+.+..|+++++|++|++++|.++.++...+..+++|++|++++|.+..+++..+..+++|+.|++++|.++.+.
T Consensus 105 ---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 105 ---IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp ---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred ---CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence 45566667888999999999999999988877888999999999999999888878889999999999999888764
Q ss_pred ccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCC
Q psy8551 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADN 283 (581)
Q Consensus 204 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 283 (581)
+..+++|+.|++++|.++.++ ..++|++|++++|.+...+.. ..++|+.|++.+|. ++.. ..+..+
T Consensus 182 ---~~~l~~L~~L~l~~n~l~~~~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~-l~~~--~~l~~l 247 (390)
T 3o6n_A 182 ---LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNN-LTDT--AWLLNY 247 (390)
T ss_dssp ---GGGCTTCSEEECCSSCCSEEE-----CCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSC-CCCC--GGGGGC
T ss_pred ---cccccccceeecccccccccC-----CCCcceEEECCCCeeeecccc---ccccccEEECCCCC-Cccc--HHHcCC
Confidence 455788999999998887654 235789999999888766443 23566777776653 2222 234555
Q ss_pred CCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCC
Q psy8551 284 LNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344 (581)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 344 (581)
++|++|++++| .+..+.+..+..+++|+.|++++|.++.++..+..+++|++|++++|++
T Consensus 248 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 248 PGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp TTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCC
T ss_pred CCccEEECCCC-cCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcc
Confidence 66666666666 4444444455666666666666666665555555555566666655544
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=5e-31 Score=261.01 Aligned_cols=306 Identities=26% Similarity=0.406 Sum_probs=219.1
Q ss_pred CCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcE
Q psy8551 136 EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRS 215 (581)
Q Consensus 136 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 215 (581)
..+++|+.|+++++.+..++ .+..+++|++|++++|.++++++ +..+++|++|++++|.++.+. .+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCcCCE
Confidence 35677777777777777665 36667777777777777766654 667777777777777666543 4666677777
Q ss_pred EECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCC
Q psy8551 216 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 295 (581)
Q Consensus 216 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 295 (581)
|++++|.++.++. +..+++|++|++++|..... ... +..+++|++|++++|
T Consensus 115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~------------------------~~~--~~~l~~L~~L~l~~~- 165 (347)
T 4fmz_A 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSD------------------------LSP--LSNMTGLNYLTVTES- 165 (347)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC------------------------CGG--GTTCTTCCEEECCSS-
T ss_pred EECcCCcccCchh--hccCCceeEEECCCCCCccc------------------------ccc--hhhCCCCcEEEecCC-
Confidence 7777776666653 56666666666666633221 111 344556666666666
Q ss_pred CccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccc
Q psy8551 296 KLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 375 (581)
Q Consensus 296 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 375 (581)
.+..++. +..+++|+.|++++|.+..++. +..+++|+.+++++|.+..
T Consensus 166 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~----------------------------- 213 (347)
T 4fmz_A 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITD----------------------------- 213 (347)
T ss_dssp CCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-----------------------------
T ss_pred CcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCC-----------------------------
Confidence 3444443 6677788888888887776655 6677788888888776531
Q ss_pred cccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccc
Q psy8551 376 KSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 455 (581)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L 455 (581)
+. .+..+++|++|++++|.+++.++ +..+++|++|++++|.++.. ..+..+++|
T Consensus 214 --------------------~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 267 (347)
T 4fmz_A 214 --------------------IT--PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKL 267 (347)
T ss_dssp --------------------CG--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred --------------------Cc--hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCc
Confidence 11 14457888888888888887764 77888888888888888775 347788889
Q ss_pred cEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCC
Q psy8551 456 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAE 535 (581)
Q Consensus 456 ~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~ 535 (581)
++|++++| .++.+ ..+..+++|++|++++| .+...++..+..+++|++|++++|+++.++. +..+++|++|++++
T Consensus 268 ~~L~l~~n-~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 268 KMLNVGSN-QISDI--SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFAN 342 (347)
T ss_dssp CEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSC
T ss_pred CEEEccCC-ccCCC--hhhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhh
Confidence 99999885 55554 34778899999999999 6776667778899999999999999998876 78899999999999
Q ss_pred Cccc
Q psy8551 536 NPIE 539 (581)
Q Consensus 536 np~~ 539 (581)
|+++
T Consensus 343 N~i~ 346 (347)
T 4fmz_A 343 QVIK 346 (347)
T ss_dssp C---
T ss_pred hccc
Confidence 9985
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=3.5e-30 Score=262.76 Aligned_cols=350 Identities=18% Similarity=0.227 Sum_probs=223.6
Q ss_pred CcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccC
Q psy8551 44 NPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFG 123 (581)
Q Consensus 44 ~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~ 123 (581)
.+++++|+++++.++++| .+..+++|++|++++|.++.++ +..+++|++|++++|.+
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l------------------- 97 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKL------------------- 97 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCC-------------------
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCC-------------------
Confidence 378999999999999987 6889999999999999998875 78889999999999874
Q ss_pred cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCC-cccc
Q psy8551 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG-LTNI 202 (581)
Q Consensus 124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~-l~~~ 202 (581)
++++ ++++++|++|++++|.++.++ +..+++|++|++++|.+++++ +..+++|+.|++++|. +..+
T Consensus 98 ----~~~~---~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 98 ----TNLD---VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp ----SCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC
T ss_pred ----ceee---cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc
Confidence 2221 556677777777777776653 566677777777777766642 5666777777777763 3332
Q ss_pred CccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCC
Q psy8551 203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD 282 (581)
Q Consensus 203 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 282 (581)
.+..+++|+.|++++|+++.++ +..+++|++|++++|.++.+. +..+++|+.|++++| .++.++ +..
T Consensus 165 ---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N-~l~~ip---~~~ 231 (457)
T 3bz5_A 165 ---DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSN-KLTEID---VTP 231 (457)
T ss_dssp ---CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC---CTT
T ss_pred ---ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCC-cccccC---ccc
Confidence 3556677777777777777664 556677777777777766652 566677777777765 333333 556
Q ss_pred CCCCCEEeCCCCCCccccccccccCCCCC----------cEEecCCCCCc-cccccccCCCCcceEEccCCCCccCCchh
Q psy8551 283 NLNLETLTLNKNPKLKTIEEGALVGLPNL----------YHLNLKENAFT-SFSESMLAWPELRTIDIAENPIECGCNIL 351 (581)
Q Consensus 283 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L----------~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 351 (581)
+++|+.|++++| .++.++. ..+++| +.+++++|.+. .+| +..+++|+.|++++|......+
T Consensus 232 l~~L~~L~l~~N-~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~-- 303 (457)
T 3bz5_A 232 LTQLTYFDCSVN-PLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD-- 303 (457)
T ss_dssp CTTCSEEECCSS-CCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE--
T ss_pred cCCCCEEEeeCC-cCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec--
Confidence 667777777777 4555543 333444 44455555433 222 3467889999999886431100
Q ss_pred hHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCC
Q psy8551 352 WLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431 (581)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 431 (581)
+ .. ..+..-.+.++++|++|++++|++++++ +..+++|
T Consensus 304 ---------------~---------------------~~---~~L~~L~l~~~~~L~~L~L~~N~l~~l~---l~~l~~L 341 (457)
T 3bz5_A 304 ---------------C---------------------QA---AGITELDLSQNPKLVYLYLNNTELTELD---VSHNTKL 341 (457)
T ss_dssp ---------------C---------------------TT---CCCSCCCCTTCTTCCEEECTTCCCSCCC---CTTCTTC
T ss_pred ---------------c---------------------CC---CcceEechhhcccCCEEECCCCcccccc---cccCCcC
Confidence 0 00 0111112455677888888888877753 6777788
Q ss_pred cEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCcc
Q psy8551 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY 506 (581)
Q Consensus 432 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~ 506 (581)
+.|++++|++++. +.|..|.+.+ +.+... ..+..|+.+++++|...+.+|+..+....++.
T Consensus 342 ~~L~l~~N~l~~l--------~~L~~L~l~~-n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~ 402 (457)
T 3bz5_A 342 KSLSCVNAHIQDF--------SSVGKIPALN-NNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402 (457)
T ss_dssp SEEECCSSCCCBC--------TTGGGSSGGG-TSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCC
T ss_pred cEEECCCCCCCCc--------cccccccccC-CcEEec-----ceeeecCccccccCcEEEEcChhHhcccCcee
Confidence 8888877777652 3455555554 233332 23345566666666545555544443333333
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.98 E-value=1.6e-30 Score=265.52 Aligned_cols=304 Identities=29% Similarity=0.471 Sum_probs=198.7
Q ss_pred hhhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCC
Q psy8551 9 LRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGG 87 (581)
Q Consensus 9 ~~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~ 87 (581)
....||..|.|.. ....+.| .+..++.+|..+++++++|+|++|+++.++ ..|.++++|++|+|++|.++.++...
T Consensus 31 ~~~~Cp~~C~C~~-~~~~v~c--~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~ 107 (440)
T 3zyj_A 31 SAQTCPSVCSCSN-QFSKVIC--VRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107 (440)
T ss_dssp --CCCCSSSEECT-TSCEEEC--CSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG
T ss_pred ccccCCCCCEeCC-CCCEEEe--CCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh
Confidence 3568999999986 4567999 999999999999999999999999988776 46788888888888888877777666
Q ss_pred CCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcE
Q psy8551 88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 167 (581)
Q Consensus 88 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~ 167 (581)
|.++++|++|++++|. ++.+++..|..+++|++|++++|.+..++...|..+++|++
T Consensus 108 ~~~l~~L~~L~L~~n~-----------------------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 108 FNGLANLNTLELFDNR-----------------------LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164 (440)
T ss_dssp GTTCSSCCEEECCSSC-----------------------CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred ccCCccCCEEECCCCc-----------------------CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence 6666777777666654 33344444555566666666655555555544555555555
Q ss_pred EECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcc
Q psy8551 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247 (581)
Q Consensus 168 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~ 247 (581)
|++++| +.+..+....|..+++|++|++++|+++.++ .+..+++|++|++++|.+
T Consensus 165 L~l~~~-----------------------~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 165 LDLGEL-----------------------KRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EECCCC-----------------------TTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCC
T ss_pred eCCCCC-----------------------CCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCcc
Confidence 555442 2333344444555556666666666666554 255666666666666666
Q ss_pred cccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccc-
Q psy8551 248 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE- 326 (581)
Q Consensus 248 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~- 326 (581)
+.+.+..|..++ +|+.|++++| .+..++...|..+++|+.|++++|.++.++.
T Consensus 220 ~~~~~~~~~~l~-------------------------~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 220 SAIRPGSFQGLM-------------------------HLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp CEECTTTTTTCT-------------------------TCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred CccChhhhccCc-------------------------cCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence 555444444333 3334444444 3444445566777888888888888887765
Q ss_pred cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCC----CceeecCCCcccccccccCCccccccC
Q psy8551 327 SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNT----SAVFCNSPAPLKYKSLISLSAEDLGCA 389 (581)
Q Consensus 327 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~ 389 (581)
.+..+++|+.|++++|++.|+|...|+..+...... ....|..|.......+..+....+.|.
T Consensus 274 ~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~ 340 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCY 340 (440)
T ss_dssp TTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCSCCC
T ss_pred HhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhccCC
Confidence 456789999999999999999999999877655432 234566676666555555554444443
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=3.8e-30 Score=262.80 Aligned_cols=288 Identities=27% Similarity=0.463 Sum_probs=197.7
Q ss_pred CCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeC
Q psy8551 212 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTL 291 (581)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 291 (581)
....++..+..++.+|.. + .++++.|++++|.+..+....|..+++|+.|++++| .+..+....|.++++|++|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDG-I--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSCCSC-C--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcCCCC-C--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEEC
Confidence 356788888888888853 2 257888888888888777766777776776666664 344444445555555555555
Q ss_pred CCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCC
Q psy8551 292 NKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA 371 (581)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 371 (581)
++| .+..++...|..+++|++|++++|.++.++.
T Consensus 120 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~--------------------------------------------- 153 (440)
T 3zyj_A 120 FDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPS--------------------------------------------- 153 (440)
T ss_dssp CSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECT---------------------------------------------
T ss_pred CCC-cCCeeCHhHhhccccCceeeCCCCcccccCH---------------------------------------------
Confidence 555 4444444445555555555555555544433
Q ss_pred cccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCC-cCCccChhhhcCCCCCcEeecCCCcceeecccccc
Q psy8551 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDN-RLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK 450 (581)
Q Consensus 372 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~ 450 (581)
..|.++++|++|++++| .+..++...|..+++|++|++++|.++.++ .+.
T Consensus 154 ---------------------------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~ 204 (440)
T 3zyj_A 154 ---------------------------YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLT 204 (440)
T ss_dssp ---------------------------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCT
T ss_pred ---------------------------HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccC
Confidence 23444555555555552 344444445556666666666666665443 255
Q ss_pred CCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcce
Q psy8551 451 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELR 529 (581)
Q Consensus 451 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~ 529 (581)
.+++|++|++++ +.++.+.+..|.++++|++|++++| .+..+++..+.++++|++|+|++|+++.++.. +..+++|+
T Consensus 205 ~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 205 PLIKLDELDLSG-NHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp TCSSCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred CCcccCEEECCC-CccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 666677777766 3566666677788888888888888 78888888899999999999999999988754 56789999
Q ss_pred EEecCCCcccccCchhHHHHHHhhcCC----CceeeCCCcccccccccccCcccc
Q psy8551 530 TIDIAENPIECGCNILWLREMLVRRNT----SAVFCNSPAPLKYKSLISLSAEDL 580 (581)
Q Consensus 530 ~L~l~~np~~c~c~~~~~~~~~~~~~~----~~~~c~~~~~~~~~~~~~~~~~~~ 580 (581)
.|++++|||.|+|+++||..|.+.... ..+.|..|..++|+.+.+++.++.
T Consensus 283 ~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~ 337 (440)
T 3zyj_A 283 RIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYF 337 (440)
T ss_dssp EEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCS
T ss_pred EEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhc
Confidence 999999999999999999999987533 345799999999999988877653
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=4.1e-30 Score=263.52 Aligned_cols=304 Identities=28% Similarity=0.453 Sum_probs=204.5
Q ss_pred hhhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCC
Q psy8551 9 LRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGG 87 (581)
Q Consensus 9 ~~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~ 87 (581)
....||..|.|.. ....+.| .+.+++.+|..+++++++|+|++|.++.++ ..|.++++|++|+|++|.++.++...
T Consensus 42 ~~~~Cp~~C~C~~-~~~~v~c--~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 118 (452)
T 3zyi_A 42 GPQNCPSVCSCSN-QFSKVVC--TRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA 118 (452)
T ss_dssp --CCCCTTSEECS-SSCEEEC--CSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CcCCCCCCCEECC-CCcEEEE--CCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh
Confidence 3678999999975 4467899 999999999999999999999999999874 57889999999999999998888888
Q ss_pred CCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcE
Q psy8551 88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 167 (581)
Q Consensus 88 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~ 167 (581)
|.++++|++|++++|. ++.+++..|.++++|++|++++|.+..++...+..+++|++
T Consensus 119 ~~~l~~L~~L~L~~n~-----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 119 FNGLASLNTLELFDNW-----------------------LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175 (452)
T ss_dssp TTTCTTCCEEECCSSC-----------------------CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred ccCcccCCEEECCCCc-----------------------CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE
Confidence 8888888888888875 34455555667777777777777777666666666666666
Q ss_pred EECCC-CcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCc
Q psy8551 168 LRVGL-NVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG 246 (581)
Q Consensus 168 L~L~~-n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 246 (581)
|++++ +.+..++...+.++++|+.|++ ++|+++.++ .+..+++|++|++++|.
T Consensus 176 L~l~~~~~l~~i~~~~~~~l~~L~~L~L------------------------~~n~l~~~~--~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 176 LDLGELKKLEYISEGAFEGLFNLKYLNL------------------------GMCNIKDMP--NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp EECCCCTTCCEECTTTTTTCTTCCEEEC------------------------TTSCCSSCC--CCTTCTTCCEEECTTSC
T ss_pred EeCCCCCCccccChhhccCCCCCCEEEC------------------------CCCcccccc--cccccccccEEECcCCc
Confidence 66665 3344444444444445555554 444444443 24445555555555555
Q ss_pred ccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccc
Q psy8551 247 FSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE 326 (581)
Q Consensus 247 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 326 (581)
+..+.+..|..+++| +.|++++| .+..+....|..+++|+.|++++|.++.++.
T Consensus 230 l~~~~~~~~~~l~~L-------------------------~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSL-------------------------KKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp CSEECGGGGTTCTTC-------------------------CEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccCcccccCccCC-------------------------CEEEeCCC-cCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 544443333333333 33333333 2333334456667777777777777776665
Q ss_pred -cccCCCCcceEEccCCCCccCCchhhHHHHHhhcC----CCceeecCCCcccccccccCCccccccCC
Q psy8551 327 -SMLAWPELRTIDIAENPIECGCNILWLREMLVRRN----TSAVFCNSPAPLKYKSLISLSAEDLGCAG 390 (581)
Q Consensus 327 -~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 390 (581)
.+..+++|+.|++++|++.|+|...|+..+..... .....|..|.......+..+......|..
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~ 352 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSA 352 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGGGCCCCC
T ss_pred HHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchhhhcccC
Confidence 45678899999999999999999988876554332 22346777776666555555555444443
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1e-29 Score=259.27 Aligned_cols=334 Identities=21% Similarity=0.216 Sum_probs=257.5
Q ss_pred hhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCC
Q psy8551 132 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLS 211 (581)
Q Consensus 132 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~ 211 (581)
+..++++++|++|++++|.+++++ .+..+++|++|++++|.+++++ +..+++|++|++++|.++++. +..++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCT
T ss_pred ccChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCC
Confidence 334677899999999999999885 5888999999999999998873 788999999999999998863 78899
Q ss_pred CCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeC
Q psy8551 212 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTL 291 (581)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 291 (581)
+|++|++++|++++++ +..+++|++|++++|.++.++ +..+++|+.|++++|..+..+ .+..+++|+.|++
T Consensus 107 ~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l 177 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDC 177 (457)
T ss_dssp TCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEEC
Confidence 9999999999999875 788999999999999998863 778899999999998766655 4677889999999
Q ss_pred CCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCC
Q psy8551 292 NKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA 371 (581)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 371 (581)
++| .++.++ +..+++|+.|++++|.++.+ .+..+++|++|++++|.+..
T Consensus 178 s~n-~l~~l~---l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~------------------------- 226 (457)
T 3bz5_A 178 SFN-KITELD---VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE------------------------- 226 (457)
T ss_dssp CSS-CCCCCC---CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-------------------------
T ss_pred CCC-ccceec---cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-------------------------
Confidence 999 677665 77889999999999999887 37788999999999987641
Q ss_pred cccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCC-------CCcEeecCCCcceee
Q psy8551 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT-------RLEELEIGQNGFSML 444 (581)
Q Consensus 372 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-------~L~~L~l~~~~i~~~ 444 (581)
++ +..+++|+.|++++|.+++.++..+..++ +|+.|++++|...+.
T Consensus 227 ------------------------ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 227 ------------------------ID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279 (457)
T ss_dssp ------------------------CC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred ------------------------cC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence 11 45678899999999999888744443333 344555555544433
Q ss_pred ccccccCCccccEEeecCCCCeeEecC-------CccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCccee
Q psy8551 445 EAGCFKGLSYLKRLEITGASNLTRVRK-------GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS 517 (581)
Q Consensus 445 ~~~~~~~~~~L~~L~l~~~~~l~~~~~-------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 517 (581)
.+ +..+++|+.|++++|..+..++. -.+.++++|++|++++| .++.++ ++++++|+.|++++|++++
T Consensus 280 ~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~---l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 280 FQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD---VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp EE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC---CTTCTTCSEEECCSSCCCB
T ss_pred cc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc---cccCCcCcEEECCCCCCCC
Confidence 32 45678888888888765554432 12556778888888888 566653 7788888888888888876
Q ss_pred eccc--c----------ccCCcceEEecCCCcccccCchhH
Q psy8551 518 FSES--M----------LAWPELRTIDIAENPIECGCNILW 546 (581)
Q Consensus 518 l~~~--~----------~~~~~L~~L~l~~np~~c~c~~~~ 546 (581)
++.- + ..+..|+.+++++|.++...+..|
T Consensus 354 l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 354 FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTC
T ss_pred ccccccccccCCcEEecceeeecCccccccCcEEEEcChhH
Confidence 5321 0 112456677788888776665443
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=9e-31 Score=270.82 Aligned_cols=300 Identities=24% Similarity=0.365 Sum_probs=253.6
Q ss_pred cccCCCccCCCC-C--CcCccEEEcccCCcccc-cccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCC
Q psy8551 31 LQEANLDVIPSH-S--NPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFP 106 (581)
Q Consensus 31 ~~~~~l~~ip~~-~--~~~l~~L~L~~~~i~~l-~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 106 (581)
+++..++.++.. + .++|++|+|++|.++.+ |..|.++++|++|++++|.++.++...|.++++|++|++++|.
T Consensus 39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--- 115 (477)
T 2id5_A 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK--- 115 (477)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC---
T ss_pred CCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc---
Confidence 478888888643 3 37999999999999987 5689999999999999999999998889999999999999986
Q ss_pred cccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCC
Q psy8551 107 QQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 186 (581)
Q Consensus 107 ~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l 186 (581)
++.+.+..|.++++|++|++++|.+..+....|..+++|++|++++|.++.++...+.++
T Consensus 116 --------------------i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 116 --------------------IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175 (477)
T ss_dssp --------------------CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred --------------------cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence 344555667888899999999888888877788888899999999888888777678888
Q ss_pred CCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCC-ccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceee
Q psy8551 187 GRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 265 (581)
Q Consensus 187 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 265 (581)
++|+.|++++|.+..+.+..+..+++|+.|++++|... .++.. .....+|++|++++|.++.++...+..+++|+.|+
T Consensus 176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 254 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254 (477)
T ss_dssp TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT-TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc-cccCccccEEECcCCcccccCHHHhcCccccCeeE
Confidence 89999999988888888778888889999999887654 44433 33445889999999988887777788888999999
Q ss_pred ecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccc-cccCCCCcceEEccCCCC
Q psy8551 266 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPI 344 (581)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~ 344 (581)
+++| .+..+....+..+++|+.|++++| .+..+....|..+++|+.|++++|.++.+++ .+..+++|++|++++|++
T Consensus 255 Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 255 LSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CCCC-cCCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 9886 467777778888999999999999 6777777789999999999999999998876 456789999999999999
Q ss_pred ccCCchhhHHHH
Q psy8551 345 ECGCNILWLREM 356 (581)
Q Consensus 345 ~~~~~~~~l~~~ 356 (581)
.|+|...|+...
T Consensus 333 ~c~c~~~~~~~~ 344 (477)
T 2id5_A 333 ACDCRLLWVFRR 344 (477)
T ss_dssp ECSGGGHHHHTT
T ss_pred cCccchHhHHhh
Confidence 999999998654
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=6.9e-30 Score=252.84 Aligned_cols=300 Identities=23% Similarity=0.364 Sum_probs=193.7
Q ss_pred cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ 124 (581)
Q Consensus 45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~ 124 (581)
+++++|+++++.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+
T Consensus 44 ~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i-------------------- 100 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI-------------------- 100 (347)
T ss_dssp TTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC--------------------
T ss_pred ccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcc--------------------
Confidence 567777777777776654 6667777777777777666654 66667777777776642
Q ss_pred ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD 204 (581)
Q Consensus 125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 204 (581)
+.+ ..+.++++|++|++++|.+..++. +..+++|++|++++|......+ .+..+++|+.|++++|.+....+
T Consensus 101 ---~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 101 ---TDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp ---CCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG
T ss_pred ---cCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh
Confidence 222 125666677777777766666543 5566666666666664332222 25566666666666666554443
Q ss_pred cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCC
Q psy8551 205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL 284 (581)
Q Consensus 205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 284 (581)
+..+++|++|++++|.++.++. +..+++|+.+++++|.+..... +..++
T Consensus 173 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---------------------------~~~~~ 221 (347)
T 4fmz_A 173 --IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---------------------------VANMT 221 (347)
T ss_dssp --GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---------------------------GGGCT
T ss_pred --hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch---------------------------hhcCC
Confidence 5556666666666666655543 5555666666666655543332 33445
Q ss_pred CCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCc
Q psy8551 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA 364 (581)
Q Consensus 285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~ 364 (581)
+|++|++++| .+..++. +..+++|+.|++++|.++.+ +.+..+++|++|++++|.+..
T Consensus 222 ~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~------------------ 279 (347)
T 4fmz_A 222 RLNSLKIGNN-KITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISD------------------ 279 (347)
T ss_dssp TCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC------------------
T ss_pred cCCEEEccCC-ccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCC------------------
Confidence 5666666666 4555443 66777777777777777765 346667778888887776531
Q ss_pred eeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceee
Q psy8551 365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML 444 (581)
Q Consensus 365 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~ 444 (581)
+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 280 -------------------------------~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 280 -------------------------------I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp -------------------------------C--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred -------------------------------C--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 1 1244577888888888888877777788888888888888888877
Q ss_pred ccccccCCccccEEeecCC
Q psy8551 445 EAGCFKGLSYLKRLEITGA 463 (581)
Q Consensus 445 ~~~~~~~~~~L~~L~l~~~ 463 (581)
.+ +..+++|++|++++|
T Consensus 327 ~~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 327 RP--LASLSKMDSADFANQ 343 (347)
T ss_dssp GG--GGGCTTCSEESSSCC
T ss_pred cC--hhhhhccceeehhhh
Confidence 66 677888888888875
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=6.7e-30 Score=270.95 Aligned_cols=262 Identities=19% Similarity=0.275 Sum_probs=198.9
Q ss_pred cCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccC
Q psy8551 45 PSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFG 123 (581)
Q Consensus 45 ~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~ 123 (581)
++++.++++++.++.+|. .+.++++|++|++++|.++.+++..|..+++|++|++++|.
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------------- 110 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-------------------- 110 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--------------------
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc--------------------
Confidence 688999999999999987 46789999999999999999988889999999999999885
Q ss_pred cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccC
Q psy8551 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203 (581)
Q Consensus 124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~ 203 (581)
++.+++..|+++++|++|++++|.++.++...|..+++|++|++++|.+.++++..+..+++|+.|++++|.++.+.
T Consensus 111 ---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 111 ---IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp ---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred ---CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 45566667888999999999999999988877888999999999999999888888889999999999999888765
Q ss_pred ccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCC
Q psy8551 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADN 283 (581)
Q Consensus 204 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 283 (581)
+..+++|+.|++++|.++.++ ..++|++|++++|.+..++... .++|+.|++++|. +... ..+..+
T Consensus 188 ---~~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~-l~~~--~~l~~l 253 (597)
T 3oja_B 188 ---LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNN-LTDT--AWLLNY 253 (597)
T ss_dssp ---GGGCTTCSEEECCSSCCSEEE-----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSC-CCCC--GGGGGC
T ss_pred ---hhhhhhhhhhhcccCcccccc-----CCchhheeeccCCccccccccc---CCCCCEEECCCCC-CCCC--hhhccC
Confidence 445678999999998887654 2457889999998887665432 2456777776653 2221 345555
Q ss_pred CCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCC
Q psy8551 284 LNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344 (581)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 344 (581)
++|+.|++++| .+..+.+..+..+++|+.|++++|.++.++..+..+++|+.|++++|.+
T Consensus 254 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 254 PGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp TTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCC
T ss_pred CCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCC
Confidence 66666666666 4444444456666666666666666666655555556666666666544
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.4e-30 Score=251.47 Aligned_cols=299 Identities=20% Similarity=0.325 Sum_probs=197.4
Q ss_pred hhhhhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCC
Q psy8551 7 QELRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPI 85 (581)
Q Consensus 7 ~~~~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~ 85 (581)
.+..+.||..|.|.- +.+.| .+.+++.+|..+++++++|+|++|.++.++. .+.++++|++|++++|.++.+.+
T Consensus 19 ~~~~~~cp~~c~c~l---~~l~~--~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (330)
T 1xku_A 19 EPMGPVCPFRCQCHL---RVVQC--SDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93 (330)
T ss_dssp ---CCCCCTTCEEET---TEEEC--TTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT
T ss_pred ccccCCCCCCCcCCC---eEEEe--cCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH
Confidence 344567999998865 67889 9999999999999999999999999999876 79999999999999999999988
Q ss_pred CCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccC
Q psy8551 86 GGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 165 (581)
Q Consensus 86 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L 165 (581)
..|..+++|++|++++|.+. .++.. + .++|++|++++|.+..++...+..+++|
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~-----------------------~l~~~-~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L 147 (330)
T 1xku_A 94 GAFAPLVKLERLYLSKNQLK-----------------------ELPEK-M--PKTLQELRVHENEITKVRKSVFNGLNQM 147 (330)
T ss_dssp TTTTTCTTCCEEECCSSCCS-----------------------BCCSS-C--CTTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred HHhcCCCCCCEEECCCCcCC-----------------------ccChh-h--cccccEEECCCCcccccCHhHhcCCccc
Confidence 89999999999999998751 11111 1 1456666666666665555555556666
Q ss_pred cEEECCCCccee--ccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECC
Q psy8551 166 AELRVGLNVFTT--LADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243 (581)
Q Consensus 166 ~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 243 (581)
++|++++|.+.. ..+..+.++++|+.|++++|.++.++... .++|++|++++|+++.+++..+..+++|++|+++
T Consensus 148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 666666665542 33344555566666666666555544321 1456666666666665555556666666666666
Q ss_pred CCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccC------CCCCcEEecC
Q psy8551 244 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG------LPNLYHLNLK 317 (581)
Q Consensus 244 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------~~~L~~L~l~ 317 (581)
+|.+....+..+..+++|+.|++++| .+..++. .+..+++|++|++++| .++.++...|.. .+.++.+++.
T Consensus 225 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~-~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~ 301 (330)
T 1xku_A 225 FNSISAVDNGSLANTPHLRELHLNNN-KLVKVPG-GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLF 301 (330)
T ss_dssp SSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCT-TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred CCcCceeChhhccCCCCCCEEECCCC-cCccCCh-hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEee
Confidence 66666555555555666666666654 2333322 3455666777777766 456655544432 3567788888
Q ss_pred CCCCcc--c-cccccCCCCcceEEccCC
Q psy8551 318 ENAFTS--F-SESMLAWPELRTIDIAEN 342 (581)
Q Consensus 318 ~~~l~~--~-~~~~~~~~~L~~L~l~~~ 342 (581)
+|.+.. + |..+..++.++.+++++|
T Consensus 302 ~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCcccccccCccccccccceeEEEeccc
Confidence 887652 2 345666777888888776
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.2e-29 Score=259.94 Aligned_cols=266 Identities=30% Similarity=0.470 Sum_probs=165.2
Q ss_pred CCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEe
Q psy8551 236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLN 315 (581)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 315 (581)
++++|++++|.+..+.+..|..+++|+.|++++| .+..+.+..|.++++|++|++++| .+..++...|..+++|++|+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 3444444444444443333444444444443332 223333333444445555555555 45555555566666666666
Q ss_pred cCCCCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCcc
Q psy8551 316 LKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLT 394 (581)
Q Consensus 316 l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 394 (581)
+++|.++.++. .+..+++|++|++++|.. +.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~------------------------------------------------l~ 185 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKK------------------------------------------------LE 185 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTT------------------------------------------------CC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCC------------------------------------------------cc
Confidence 66666665544 344555555555554321 11
Q ss_pred ccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCcc
Q psy8551 395 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF 474 (581)
Q Consensus 395 ~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 474 (581)
.+....|.++++|++|++++|.+++++ .+..+++|++|++++|. ++.+.+..|
T Consensus 186 ~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~-------------------------l~~~~~~~~ 238 (452)
T 3zyi_A 186 YISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNH-------------------------FPEIRPGSF 238 (452)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSC-------------------------CSEECGGGG
T ss_pred ccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCc-------------------------CcccCcccc
Confidence 122233444555555555555555443 24444444444444444 444444556
Q ss_pred CCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCchhHHHHHHhh
Q psy8551 475 ADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCNILWLREMLVR 553 (581)
Q Consensus 475 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~ 553 (581)
.++++|++|++++| .+..+++..+.++++|++|++++|+++.++.. +..+++|++|++++|||.|+|++.|+..|.++
T Consensus 239 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~ 317 (452)
T 3zyi_A 239 HGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLRE 317 (452)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHH
T ss_pred cCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHH
Confidence 66677777777777 67777778889999999999999999988754 56789999999999999999999999999987
Q ss_pred cC----CCceeeCCCcccccccccccCccc
Q psy8551 554 RN----TSAVFCNSPAPLKYKSLISLSAED 579 (581)
Q Consensus 554 ~~----~~~~~c~~~~~~~~~~~~~~~~~~ 579 (581)
.. ...+.|..|..++|+.+.+++..+
T Consensus 318 ~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~ 347 (452)
T 3zyi_A 318 YIPTNSTCCGRCHAPMHMRGRYLVEVDQAS 347 (452)
T ss_dssp HC---CCSSCBEEESTTTTTCBTTSCCGGG
T ss_pred hCccCCccCcEeCCchHhccchhhccchhh
Confidence 42 234689999999999998887654
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=6.2e-30 Score=248.30 Aligned_cols=284 Identities=20% Similarity=0.325 Sum_probs=222.7
Q ss_pred cEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCC
Q psy8551 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK 293 (581)
Q Consensus 214 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 293 (581)
+.++.+++.++.+|... .++|++|++++|.++.++...+..+++|+.|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~------------------------- 61 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS------------------------- 61 (306)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS-------------------------
T ss_pred CEEEcCCCCcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCC-------------------------
Confidence 46777777787777432 25788888888877766655555555555555544
Q ss_pred CCCccccc--cccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCC
Q psy8551 294 NPKLKTIE--EGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA 371 (581)
Q Consensus 294 ~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 371 (581)
| .+..+. ...+..+++|+.|++++|.++.++..+..+++|++|++++|.+..
T Consensus 62 n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~------------------------- 115 (306)
T 2z66_A 62 N-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ------------------------- 115 (306)
T ss_dssp S-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES-------------------------
T ss_pred C-ccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccc-------------------------
Confidence 4 232221 123456778888888888888777777788888888888876531
Q ss_pred cccccccccCCccccccCCCCccccCc-cccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCccee-eccccc
Q psy8551 372 PLKYKSLISLSAEDLGCAGAGLTNISD-NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM-LEAGCF 449 (581)
Q Consensus 372 ~~~~~~~~~l~~~~~~~~~~~~~~i~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~-~~~~~~ 449 (581)
+.. ..+.++++|++|++++|.+....+..+..+++|++|++++|.+.+ ..+..+
T Consensus 116 ------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 171 (306)
T 2z66_A 116 ------------------------MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171 (306)
T ss_dssp ------------------------STTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred ------------------------cccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence 111 345667889999999999888877888899999999999998886 567778
Q ss_pred cCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceee-ccccccCC-c
Q psy8551 450 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWP-E 527 (581)
Q Consensus 450 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~-~ 527 (581)
..+++|++|++++ +.++.+.+..+..+++|++|++++| .+..+++..+..+++|++|++++|.+++. +..+..++ +
T Consensus 172 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 172 TELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred hhCcCCCEEECCC-CCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 8999999999998 4778888888999999999999999 77888777789999999999999999875 45677774 8
Q ss_pred ceEEecCCCcccccCchhHHHHHHhhc-----CCCceeeCCCcccccccccccCc
Q psy8551 528 LRTIDIAENPIECGCNILWLREMLVRR-----NTSAVFCNSPAPLKYKSLISLSA 577 (581)
Q Consensus 528 L~~L~l~~np~~c~c~~~~~~~~~~~~-----~~~~~~c~~~~~~~~~~~~~~~~ 577 (581)
|++|++++||++|+|+..||.+|+++. ....+.|..|..++|+++.+++.
T Consensus 250 L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~ 304 (306)
T 2z66_A 250 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNI 304 (306)
T ss_dssp CCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGGCCC
T ss_pred CCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeeeecC
Confidence 999999999999999999999999874 33456899999999999999865
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.8e-30 Score=251.41 Aligned_cols=297 Identities=23% Similarity=0.328 Sum_probs=230.4
Q ss_pred hhhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCC
Q psy8551 9 LRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGG 87 (581)
Q Consensus 9 ~~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~ 87 (581)
+...||..|.|.- +.+.| .+..++.+|..+++++++|+|++|.++.++. .+.++++|++|++++|.++.+.+..
T Consensus 23 ~~~~cp~~c~c~l---~~l~~--~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 97 (332)
T 2ft3_A 23 YSAMCPFGCHCHL---RVVQC--SDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA 97 (332)
T ss_dssp --CCCCSSCEEET---TEEEC--CSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred ccCCCCCCCcccC---CEEEC--CCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH
Confidence 3567999998865 67889 9999999999999999999999999998864 7999999999999999999998788
Q ss_pred CCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcE
Q psy8551 88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE 167 (581)
Q Consensus 88 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~ 167 (581)
|..+++|++|++++|.+ +.++...+ ++|++|++++|.+..++...+..+++|++
T Consensus 98 ~~~l~~L~~L~L~~n~l-----------------------~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 151 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHL-----------------------VEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNC 151 (332)
T ss_dssp STTCTTCCEEECCSSCC-----------------------CSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred hhCcCCCCEEECCCCcC-----------------------CccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence 99999999999999874 22222211 67888888888888887777788888888
Q ss_pred EECCCCccee--ccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCC
Q psy8551 168 LRVGLNVFTT--LADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245 (581)
Q Consensus 168 L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~ 245 (581)
|++++|.++. ..+..+..+ +|+.|++++|.++.++... .++|++|++++|.++.+++..+..+++|++|++++|
T Consensus 152 L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 152 IEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp EECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred EECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 8888888763 445556666 8888888888887765432 267888888888888877777888888888888888
Q ss_pred cccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccC------CCCCcEEecCCC
Q psy8551 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG------LPNLYHLNLKEN 319 (581)
Q Consensus 246 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------~~~L~~L~l~~~ 319 (581)
.+....+..+..+++|+.|++++| .+..++. .+..+++|+.|++++| .++.++...|.. .+.++.+++.+|
T Consensus 228 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~-~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 228 QIRMIENGSLSFLPTLRELHLDNN-KLSRVPA-GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCT-TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred cCCcCChhHhhCCCCCCEEECCCC-cCeecCh-hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecC
Confidence 888877777778888888888876 4444444 3677788888888888 577776655554 357889999999
Q ss_pred CCc--cc-cccccCCCCcceEEccCCC
Q psy8551 320 AFT--SF-SESMLAWPELRTIDIAENP 343 (581)
Q Consensus 320 ~l~--~~-~~~~~~~~~L~~L~l~~~~ 343 (581)
.+. .+ +..+..+++|+.+++++|.
T Consensus 305 ~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccCcccccccchhhhhhccccc
Confidence 876 33 3467778889999988763
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.7e-29 Score=244.91 Aligned_cols=256 Identities=28% Similarity=0.413 Sum_probs=179.3
Q ss_pred ccCCCccCCCCCC--------cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCC
Q psy8551 32 QEANLDVIPSHSN--------PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK 103 (581)
Q Consensus 32 ~~~~l~~ip~~~~--------~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~ 103 (581)
....++.+|.... .+++.++++++.++.+|..+ .++|++|++++|.++.+++..|.++++|++|++++|.
T Consensus 12 ~~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 89 (332)
T 2ft3_A 12 GIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89 (332)
T ss_dssp -------------CCCCSSCEEETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCccccCCCcccCCCCCCCcccCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc
Confidence 4455555554321 36899999999999988765 3789999999999999888889999999999999875
Q ss_pred CCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcC
Q psy8551 104 HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183 (581)
Q Consensus 104 ~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l 183 (581)
++.+.+..|+++++|++|++++|.++.++...+ ++|++|++++|.++.+++..+
T Consensus 90 -----------------------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~ 143 (332)
T 2ft3_A 90 -----------------------ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVF 143 (332)
T ss_dssp -----------------------CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGG
T ss_pred -----------------------cCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHh
Confidence 455666778889999999999998888776433 788888888888888777778
Q ss_pred CCCCCCcEEEcCCCCccc--cCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCccc
Q psy8551 184 NGLGRLSALDLRGAGLTN--ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261 (581)
Q Consensus 184 ~~l~~L~~L~L~~~~l~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 261 (581)
.++++|+.|++++|.++. ..+..+..+ +|++|++++|+++.++.... ++|++|++++|.+....+..+..+++|
T Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L 219 (332)
T 2ft3_A 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKL 219 (332)
T ss_dssp SSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTC
T ss_pred CCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCC
Confidence 888888888888887753 445556655 78888888888877764322 567777777777666555445544444
Q ss_pred ceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccC
Q psy8551 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAE 341 (581)
Q Consensus 262 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 341 (581)
+. |++++| .+..++...+..+++|+.|++++|.++.+|..+..+++|++|++++
T Consensus 220 ~~-------------------------L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 220 YR-------------------------LGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp SC-------------------------CBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCS
T ss_pred CE-------------------------EECCCC-cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCC
Confidence 44 444444 3444444456666777777777777777766666667777777777
Q ss_pred CCCc
Q psy8551 342 NPIE 345 (581)
Q Consensus 342 ~~~~ 345 (581)
|++.
T Consensus 274 N~l~ 277 (332)
T 2ft3_A 274 NNIT 277 (332)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6654
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.7e-28 Score=240.86 Aligned_cols=244 Identities=28% Similarity=0.443 Sum_probs=171.9
Q ss_pred cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ 124 (581)
Q Consensus 45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~ 124 (581)
.+++.++++++.++.+|..+. +++++|++++|.++.++...|.++++|++|++++|.
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--------------------- 87 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK--------------------- 87 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC---------------------
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc---------------------
Confidence 378889999999988887553 688999999999988888788888899999888875
Q ss_pred ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccc--c
Q psy8551 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN--I 202 (581)
Q Consensus 125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~--~ 202 (581)
++.+.+..|+++++|++|++++|.++.++...+ ++|++|++++|.++.+++..+.++++|+.|++++|.++. .
T Consensus 88 --l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 162 (330)
T 1xku_A 88 --ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162 (330)
T ss_dssp --CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred --CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc
Confidence 445556667888888888888888887766332 678888888887777766667777778888887777653 4
Q ss_pred CccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCC
Q psy8551 203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD 282 (581)
Q Consensus 203 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 282 (581)
.+..+..+++|++|++++|.++.++.... ++|++|++++|.++...+..+..++
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~----------------------- 216 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLN----------------------- 216 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCT-----------------------
T ss_pred ChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCC-----------------------
Confidence 45566677777777777777776664322 5677777777766655544444444
Q ss_pred CCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCc
Q psy8551 283 NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 345 (581)
Q Consensus 283 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~ 345 (581)
+|+.|++++| .++.++...+..+++|++|++++|.++.+|..+..+++|++|++++|++.
T Consensus 217 --~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 217 --NLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp --TCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred --CCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC
Confidence 4444555544 34444444556666677777777776666666666666777777666554
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=9.8e-29 Score=237.13 Aligned_cols=245 Identities=24% Similarity=0.384 Sum_probs=204.0
Q ss_pred CCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccc-cccccCCCCcceEEccCCC-CccCCchhhHHHHHhhcC
Q psy8551 284 LNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENP-IECGCNILWLREMLVRRN 361 (581)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~~~ 361 (581)
+++++|+++++ .++.++...+..+++|++|++++|.++.+ +..+..+++|++|++++|. +.
T Consensus 32 ~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~---------------- 94 (285)
T 1ozn_A 32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR---------------- 94 (285)
T ss_dssp TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC----------------
T ss_pred CCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc----------------
Confidence 35666777766 56666666677778888888888877766 4466777888888888775 32
Q ss_pred CCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcc
Q psy8551 362 TSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 441 (581)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i 441 (581)
.+....|.++++|++|++++|.+++.++..+..+++|++|++++|.+
T Consensus 95 ---------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 141 (285)
T 1ozn_A 95 ---------------------------------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141 (285)
T ss_dssp ---------------------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ---------------------------------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc
Confidence 22334566788899999999998888778888899999999999999
Q ss_pred eeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-
Q psy8551 442 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE- 520 (581)
Q Consensus 442 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~- 520 (581)
+...+..+..+++|++|++++ +.++.+....+..+++|++|++++| .+..+.+..+..+++|++|++++|.++.++.
T Consensus 142 ~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 142 QALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred cccCHhHhccCCCccEEECCC-CcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 888888888899999999988 4778888888999999999999999 7777777889999999999999999998874
Q ss_pred ccccCCcceEEecCCCcccccCchhHHHHHHhhc--CCCceeeCCCcccccccccccCcccc
Q psy8551 521 SMLAWPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSAEDL 580 (581)
Q Consensus 521 ~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~--~~~~~~c~~~~~~~~~~~~~~~~~~~ 580 (581)
.+..+++|++|++++||+.|+|+..|+.+|++.. ....+.|..|..++|+.+.+++..|+
T Consensus 220 ~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l 281 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL 281 (285)
T ss_dssp HHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGS
T ss_pred HcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHh
Confidence 4788999999999999999999999999999885 44556799999999999999999886
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.8e-30 Score=253.65 Aligned_cols=300 Identities=22% Similarity=0.319 Sum_probs=241.0
Q ss_pred hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCC
Q psy8551 11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFE 89 (581)
Q Consensus 11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~ 89 (581)
..|+..|.|.. ...|+.++..++.+|..+++++++|+|++|.++.++. .+.++++|++|++++|.++.+++..|.
T Consensus 22 ~~~~~~~~C~~----~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (353)
T 2z80_A 22 SSNQASLSCDR----NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97 (353)
T ss_dssp -----CCEECT----TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCccCCCCCC----CeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC
Confidence 34555555554 1125559999999999999999999999999999886 799999999999999999999888899
Q ss_pred CCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcEE
Q psy8551 90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAEL 168 (581)
Q Consensus 90 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L 168 (581)
++++|++|++++|. ++.+++..++++++|++|++++|.++.++. ..+..+++|++|
T Consensus 98 ~l~~L~~L~Ls~n~-----------------------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 98 SLGSLEHLDLSYNY-----------------------LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TCTTCCEEECCSSC-----------------------CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCCCCCEEECCCCc-----------------------CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence 99999999999986 455666678899999999999999999887 678899999999
Q ss_pred ECCCC-cceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcc
Q psy8551 169 RVGLN-VFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247 (581)
Q Consensus 169 ~L~~n-~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~ 247 (581)
++++| .+..+++..+.++++|+.|++++|.++...+..+..+++|++|++++|+++.++...+..+++|++|++++|.+
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence 99998 57888777899999999999999999988888899999999999999999888766666788999999999988
Q ss_pred cccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCC----CccccccccccCCCCCcEEecCCCCCcc
Q psy8551 248 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP----KLKTIEEGALVGLPNLYHLNLKENAFTS 323 (581)
Q Consensus 248 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 323 (581)
+......+... .....++.++++++. .+..++. .+..+++|+.|++++|.++.
T Consensus 235 ~~~~~~~l~~~----------------------~~~~~l~~l~L~~~~l~~~~l~~l~~-~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 235 DTFHFSELSTG----------------------ETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp TTCCCC----------------------------CCCCCCEEEEESCBCCHHHHHHHHH-HHHTCTTCCEEECCSSCCCC
T ss_pred ccccccccccc----------------------cccchhhccccccccccCcchhhhHH-HHhcccCCCEEECCCCCCCc
Confidence 76554322210 112334455555442 1223433 57889999999999999999
Q ss_pred ccccc-cCCCCcceEEccCCCCccCCc-hhhHHHHHhhc
Q psy8551 324 FSESM-LAWPELRTIDIAENPIECGCN-ILWLREMLVRR 360 (581)
Q Consensus 324 ~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~~ 360 (581)
+|..+ ..+++|++|++++|++.|.++ ..|+..+....
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~ 330 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 330 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhc
Confidence 98864 789999999999999999986 67776665444
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.4e-29 Score=249.22 Aligned_cols=306 Identities=19% Similarity=0.299 Sum_probs=203.6
Q ss_pred CCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEE
Q psy8551 137 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSL 216 (581)
Q Consensus 137 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 216 (581)
.|+.....+.+++.++.+|.. + .++|++|++++|.++.++...+.++++|+.|++++|.++.+.+..+..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~-~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSG-L--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTT-C--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCccccccc-c--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 355566678888888888763 2 2588999999999988887778889999999999999888887788888999999
Q ss_pred ECCCCcCCccCccccCCCCCCCEEECCCCcccccCC-cccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCC
Q psy8551 217 VLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA-GCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 295 (581)
Q Consensus 217 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 295 (581)
++++|+++.++...+..+++|++|++++|.+..++. ..+..+++|+.|++++|..+
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~----------------------- 162 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF----------------------- 162 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-----------------------
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc-----------------------
Confidence 999999998887778888999999999988887665 45666666666666654333
Q ss_pred CccccccccccCCCCCcEEecCCCCCccc-cccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCccc
Q psy8551 296 KLKTIEEGALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLK 374 (581)
Q Consensus 296 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (581)
+.++...+..+++|++|++++|.++.+ +..+..+++|++|++++|.
T Consensus 163 --~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~------------------------------- 209 (353)
T 2z80_A 163 --TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ------------------------------- 209 (353)
T ss_dssp --CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-------------------------------
T ss_pred --cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-------------------------------
Confidence 333333455556666666666655543 3334444444444444433
Q ss_pred ccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccc---cC
Q psy8551 375 YKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF---KG 451 (581)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~---~~ 451 (581)
++..+...+..+++|++|++++|.+++.....+ ..
T Consensus 210 ------------------------------------------l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 210 ------------------------------------------HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp ------------------------------------------STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred ------------------------------------------cccchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 222222222223333333333333332221111 11
Q ss_pred CccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecccc-ccCCcceE
Q psy8551 452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAWPELRT 530 (581)
Q Consensus 452 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~ 530 (581)
.+.++.+++.+ +.++++ .+..++ .++..+++|++|++++|.++.+|..+ ..+++|++
T Consensus 248 ~~~l~~l~L~~--------------------~~l~~~-~l~~l~-~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 248 NSLIKKFTFRN--------------------VKITDE-SLFQVM-KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305 (353)
T ss_dssp CCCCCEEEEES--------------------CBCCHH-HHHHHH-HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cchhhcccccc--------------------ccccCc-chhhhH-HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCE
Confidence 12222233222 222223 333443 45778999999999999999999875 78999999
Q ss_pred EecCCCcccccCc-hhHHHHHHhhcCC---CceeeCCCc
Q psy8551 531 IDIAENPIECGCN-ILWLREMLVRRNT---SAVFCNSPA 565 (581)
Q Consensus 531 L~l~~np~~c~c~-~~~~~~~~~~~~~---~~~~c~~~~ 565 (581)
|++++||+.|+|+ +.|+..|.+.... ..+.|..|.
T Consensus 306 L~L~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C~~p~ 344 (353)
T 2z80_A 306 IWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 344 (353)
T ss_dssp EECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTTC
T ss_pred EEeeCCCccCcCCCcHHHHHHHHhccccCCCCcccCCCC
Confidence 9999999999997 8899999988533 245798873
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.1e-28 Score=236.78 Aligned_cols=234 Identities=27% Similarity=0.378 Sum_probs=197.3
Q ss_pred cCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCC
Q psy8551 12 KCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEP 90 (581)
Q Consensus 12 ~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~ 90 (581)
+||..|.|.....+.+.| .+.+++.+|..+++++++|+|++|.++.++. .+..+++|++|++++|.++.+.+..|..
T Consensus 1 ~CP~~C~C~~~~~~~~~c--~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 78 (285)
T 1ozn_A 1 PCPGACVCYNEPKVTTSC--PQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78 (285)
T ss_dssp CCCTTCEEECSSSCEEEC--CSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CcCCCceECCCCCeEEEc--CcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence 599999998644467899 9999999999999999999999999999874 6899999999999999999998889999
Q ss_pred CCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEEC
Q psy8551 91 QEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 170 (581)
Q Consensus 91 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L 170 (581)
+++|++|++++|.. ++.+.+..+..+++|++|++++|.++.++...+..+++|++|++
T Consensus 79 l~~L~~L~l~~n~~----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 136 (285)
T 1ozn_A 79 LALLEQLDLSDNAQ----------------------LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136 (285)
T ss_dssp CTTCCEEECCSCTT----------------------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCCCEEeCCCCCC----------------------ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEEC
Confidence 99999999999852 34445566788899999999999998887777888889999999
Q ss_pred CCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCccccc
Q psy8551 171 GLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML 250 (581)
Q Consensus 171 ~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 250 (581)
++|.++.+++..+..+++|+.|++++|.++.+.+..+..+++|++|++++|.++++.+..+..+++|++|++++|.++.+
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence 99988888777788888888888888888888777788888888888888888887667788888888888888888776
Q ss_pred CCcccCCCcccceeeecCC
Q psy8551 251 EAGCFKGLSYLKRLEITGA 269 (581)
Q Consensus 251 ~~~~~~~~~~L~~L~l~~~ 269 (581)
++..+..+++|+.+++++|
T Consensus 217 ~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 217 PTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CHHHHTTCTTCCEEECCSS
T ss_pred CHHHcccCcccCEEeccCC
Confidence 6655666666666666554
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.4e-28 Score=238.73 Aligned_cols=267 Identities=20% Similarity=0.308 Sum_probs=163.7
Q ss_pred CCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecC--CCCCC
Q psy8551 13 CMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIP--IGGFE 89 (581)
Q Consensus 13 ~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~--~~~~~ 89 (581)
||..|.|.. ..+.| .+.+++.+|..+++++++|+|++|.++.+|. .+.++++|++|++++|.++.+. ...+.
T Consensus 1 CP~~C~C~~---~~l~c--~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 75 (306)
T 2z66_A 1 CPSRCSCSG---TEIRC--NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF 75 (306)
T ss_dssp CCTTCEEET---TEEEC--CSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH
T ss_pred CcCCCeeCC---CEEEc--CCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc
Confidence 899999976 57999 9999999999999999999999999998886 4678888888888888776442 12344
Q ss_pred CCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcEE
Q psy8551 90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAEL 168 (581)
Q Consensus 90 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L 168 (581)
.+++|++|++++|.+ +.++. .+..+++|++|++++|.++.++. ..+..+++|++|
T Consensus 76 ~~~~L~~L~Ls~n~i-----------------------~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 131 (306)
T 2z66_A 76 GTTSLKYLDLSFNGV-----------------------ITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131 (306)
T ss_dssp SCSCCCEEECCSCSE-----------------------EEEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcc-----------------------ccChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEE
Confidence 566667776666642 22211 24455666666666665555443 334445555555
Q ss_pred ECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCc-cCccccCCCCCCCEEECCCCcc
Q psy8551 169 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQS-IPTKQLSKLTRLEELEIGQNGF 247 (581)
Q Consensus 169 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~~~~ 247 (581)
++++|.+....+..+..+++|+.|++++| .+++ ..+..+..+++|++|++++|.+
T Consensus 132 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n------------------------~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGN------------------------SFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp ECTTSCCEECSTTTTTTCTTCCEEECTTC------------------------EEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCccchhhcccCcCCCEEECCCC------------------------ccccccchhHHhhCcCCCEEECCCCCc
Confidence 55555554444444444444444444444 4433 2223344445555555555544
Q ss_pred cccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCcccc-c
Q psy8551 248 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS-E 326 (581)
Q Consensus 248 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~ 326 (581)
+...+..+..+ ++|++|++++| .+..++...+..+++|+.|++++|.++..+ .
T Consensus 188 ~~~~~~~~~~l-------------------------~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 188 EQLSPTAFNSL-------------------------SSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp CEECTTTTTTC-------------------------TTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred CCcCHHHhcCC-------------------------CCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 44333323222 23333333333 233333334566677777777777776543 3
Q ss_pred cccCC-CCcceEEccCCCCccCCchhhHHHHHh
Q psy8551 327 SMLAW-PELRTIDIAENPIECGCNILWLREMLV 358 (581)
Q Consensus 327 ~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~ 358 (581)
.+..+ ++|++|++++|++.|.+...|+..+..
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~ 274 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 274 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred HHHhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence 55555 489999999999999988777666543
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=6.9e-27 Score=226.87 Aligned_cols=251 Identities=16% Similarity=0.146 Sum_probs=195.3
Q ss_pred cCccEEEcccCCcc---cccccccCCCcccEEEcCC-CceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccc
Q psy8551 45 PSIQRLVLSTNRIK---TVDSAIPIYLSLQHVDLSH-TTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE 120 (581)
Q Consensus 45 ~~l~~L~L~~~~i~---~l~~~~~~~~~L~~L~ls~-~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 120 (581)
.++++|+|+++.+. .+|..+.++++|++|++++ |.+....+..+.++++|++|++++|.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~----------------- 112 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN----------------- 112 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-----------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-----------------
Confidence 58999999999998 4888999999999999995 88886666778999999999999876
Q ss_pred ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCC-CCcEEEcCCCCc
Q psy8551 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG-RLSALDLRGAGL 199 (581)
Q Consensus 121 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~L~~~~l 199 (581)
++...+..+.++++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..++ +|+.|++++|.+
T Consensus 113 ------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 113 ------VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ------CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred ------eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 3444455688899999999999999866666888899999999999999866666777877 899999999988
Q ss_pred cccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCcc
Q psy8551 200 TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGA 279 (581)
Q Consensus 200 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 279 (581)
++..+..+..+. |++|++++|++++.++..+..+++|++|++++|.++...+. +.
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~----------------------- 241 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG----------------------- 241 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CC-----------------------
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cc-----------------------
Confidence 877777777776 88889888888877777788888888888888877643332 22
Q ss_pred CCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCcc
Q psy8551 280 FADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC 346 (581)
Q Consensus 280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 346 (581)
.+++|++|++++| .+....+..+..+++|+.|++++|.+++..+....+++|+.+++.+|+.-|
T Consensus 242 --~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 242 --LSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp --CCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred --ccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 3356666666666 344223335777888888888888887333333677888888888887543
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.94 E-value=5.1e-27 Score=218.86 Aligned_cols=226 Identities=23% Similarity=0.333 Sum_probs=194.3
Q ss_pred hhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCc-eeecCCCC
Q psy8551 10 RSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTT-WLIIPIGG 87 (581)
Q Consensus 10 ~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~-l~~~~~~~ 87 (581)
+++||..|.|..|....+.| .+ ++.+|. +++++++|+|++|+++.++. .|.++++|++|++++|. ++.++...
T Consensus 1 ~~~cp~~C~C~~~~~~~v~c--~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~ 75 (239)
T 2xwt_C 1 MGCSSPPCECHQEEDFRVTC--KD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS 75 (239)
T ss_dssp --CCSSSCSEEECSTTEEEE--CS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT
T ss_pred CCCCCCCCeeCCCCcceeEc--cC--ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH
Confidence 46899999998766677789 55 999999 88999999999999999986 78999999999999997 99999889
Q ss_pred CCCCCcccEEeCCC-CCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCc
Q psy8551 88 FEPQEKLVELQLNH-NKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA 166 (581)
Q Consensus 88 ~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~ 166 (581)
|..+++|++|++++ |. ++.+++..|.++++|++|++++|.++.++. +..+++|+
T Consensus 76 f~~l~~L~~L~l~~~n~-----------------------l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~ 130 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRN-----------------------LTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTD 130 (239)
T ss_dssp EESCTTCCEEEEEEETT-----------------------CCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCC
T ss_pred cCCCcCCcEEECCCCCC-----------------------eeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccc
Confidence 99999999999998 64 556667778899999999999999998775 77788888
Q ss_pred ---EEECCCC-cceeccCCcCCCCCCCc-EEEcCCCCccccCccccCCCCCCcEEECCCCc-CCccCccccCCC-CCCCE
Q psy8551 167 ---ELRVGLN-VFTTLADGAFNGLGRLS-ALDLRGAGLTNISDNAFRGLSGLRSLVLTDNR-LQSIPTKQLSKL-TRLEE 239 (581)
Q Consensus 167 ---~L~L~~n-~~~~~~~~~l~~l~~L~-~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~ 239 (581)
+|++++| .++.+++..|.++++|+ .|++++|+++.++...+.. ++|+.|++++|+ ++.+++..+..+ ++|++
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence 9999999 89999888899999999 9999999998887766666 789999999995 999888888888 89999
Q ss_pred EECCCCcccccCCcccCCCcccceeeecCC
Q psy8551 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGA 269 (581)
Q Consensus 240 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 269 (581)
|++++|.++.++.. .+++|+.|.+.++
T Consensus 210 L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 210 LDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp EECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred EECCCCccccCChh---HhccCceeeccCc
Confidence 99999988877654 4556777776654
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=7.8e-30 Score=262.87 Aligned_cols=388 Identities=19% Similarity=0.214 Sum_probs=217.8
Q ss_pred CcCccEEEcccCCcccccc--cccCCCcccEEEcCCCceeecC----CCCCCCCCcccEEeCCCCCCCCcccccccCCcc
Q psy8551 44 NPSIQRLVLSTNRIKTVDS--AIPIYLSLQHVDLSHTTWLIIP----IGGFEPQEKLVELQLNHNKHFPQQIVCSIISPR 117 (581)
Q Consensus 44 ~~~l~~L~L~~~~i~~l~~--~~~~~~~L~~L~ls~~~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 117 (581)
++++++|+|+++++++.+. .+..+++|++|++++|.++... ...+..+++|++|++++|.+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l------------- 68 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL------------- 68 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC-------------
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-------------
Confidence 5688899999998876543 3778888999999988877321 23466678888888888763
Q ss_pred cccccCcccccccchhh-cCCCC----CCcEEeCCCCcCcccC----CcccccCccCcEEECCCCcceeccCC-----cC
Q psy8551 118 RVEIFGQNRISRIDQAC-FEGLT----ALRILYLDDNQLRSVP----TPSFIYLGMLAELRVGLNVFTTLADG-----AF 183 (581)
Q Consensus 118 ~L~~l~~~~l~~~~~~~-l~~~~----~L~~L~l~~~~i~~~~----~~~~~~~~~L~~L~L~~n~~~~~~~~-----~l 183 (581)
++..... +..++ +|++|++++|.++... ...+..+++|++|++++|.++..... ..
T Consensus 69 ----------~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 69 ----------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp ----------HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred ----------ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 1111111 11222 5777777777776422 33456666777777777766532211 12
Q ss_pred CCCCCCcEEEcCCCCccccC----ccccCCCCCCcEEECCCCcCCccCccccC-----CCCCCCEEECCCCcccccCCcc
Q psy8551 184 NGLGRLSALDLRGAGLTNIS----DNAFRGLSGLRSLVLTDNRLQSIPTKQLS-----KLTRLEELEIGQNGFSMLEAGC 254 (581)
Q Consensus 184 ~~l~~L~~L~L~~~~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~ 254 (581)
...++|+.|++++|.++... +..+..+++|++|++++|.++......+. ..++|++|++++|.++......
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 22445666666666655433 22333455666666666655533221121 2345556666555444321000
Q ss_pred cCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccc-----cccccCCCCCcEEecCCCCCcc-----c
Q psy8551 255 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE-----EGALVGLPNLYHLNLKENAFTS-----F 324 (581)
Q Consensus 255 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~l~~-----~ 324 (581)
+ ...+..+++|++|++++| .+++.. ...+..+++|++|++++|.++. +
T Consensus 219 l---------------------~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 219 L---------------------CGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp H---------------------HHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred H---------------------HHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 0 111233455666666666 333321 2223356677777777777764 4
Q ss_pred cccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCC
Q psy8551 325 SESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGL 404 (581)
Q Consensus 325 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 404 (581)
+..+..+++|++|++++|.+..... .. +........
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~-~~-------------------------------------------l~~~l~~~~ 312 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGA-RL-------------------------------------------LCETLLEPG 312 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHH-HH-------------------------------------------HHHHHTSTT
T ss_pred HHHHhhCCCcceEECCCCCCchHHH-HH-------------------------------------------HHHHhccCC
Confidence 5555566777777777775531100 00 000111123
Q ss_pred CCCCEEEcCCCcCCccC----hhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccC-CCCC
Q psy8551 405 SGLRSLVLTDNRLQSIP----TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA-DNLN 479 (581)
Q Consensus 405 ~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~ 479 (581)
++|++|++++|.++... +..+..+++|++|++++|.+++..+..+.. .+. ..++
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~---------------------~l~~~~~~ 371 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ---------------------GLGQPGSV 371 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH---------------------HHTSTTCC
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH---------------------HHcCCCCc
Confidence 56777777777766542 234555677777777777665543322211 111 2457
Q ss_pred CCeeeCCCCCCce-----eecCCccCCCCCccEEEcCCCcceee-----cccccc-CCcceEEecCCCcccccCc
Q psy8551 480 LETLTLNKNPKLK-----IIEEDALVGLPNLYHLNLKENAFTSF-----SESMLA-WPELRTIDIAENPIECGCN 543 (581)
Q Consensus 480 L~~L~l~~~~~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~l-----~~~~~~-~~~L~~L~l~~np~~c~c~ 543 (581)
|++|++++| .++ .+ +..+..+++|++|++++|.++.. .+.+.. ..+|+.|.+.++.+.+...
T Consensus 372 L~~L~L~~n-~i~~~~~~~l-~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~ 444 (461)
T 1z7x_W 372 LRVLWLADC-DVSDSSCSSL-AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 444 (461)
T ss_dssp CCEEECTTS-CCCHHHHHHH-HHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred eEEEECCCC-CCChhhHHHH-HHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence 777777777 455 34 34566788999999999988732 222222 3468888888888866443
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.1e-25 Score=211.79 Aligned_cols=237 Identities=26% Similarity=0.472 Sum_probs=194.7
Q ss_pred CCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCC
Q psy8551 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTS 363 (581)
Q Consensus 285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~ 363 (581)
..+.++++++ .++.+|.. + .+++++|++++|.++.++. .+..+++|++|++++|.+.
T Consensus 17 ~~~~l~~~~~-~l~~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------ 74 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ------------------ 74 (270)
T ss_dssp TTTEEECTTS-CCSSCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS------------------
T ss_pred CCCEEEccCC-CCCccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC------------------
Confidence 4567777776 56666642 2 2578888888888887765 6777888888888887653
Q ss_pred ceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCccee
Q psy8551 364 AVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 443 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~ 443 (581)
.++...|.++++|++|++++|.++.+++..+..+++|++|++++|.++.
T Consensus 75 -------------------------------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 75 -------------------------------TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123 (270)
T ss_dssp -------------------------------CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred -------------------------------eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence 2344556778899999999999998888888899999999999999999
Q ss_pred eccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccc-c
Q psy8551 444 LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-M 522 (581)
Q Consensus 444 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~ 522 (581)
..+..+..+++|++|++++ +.++.++...|..+++|++|++++| .+..+++..+..+++|++|++++|.++.++.. +
T Consensus 124 ~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 124 LPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp CCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred eCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence 8888889999999999998 4677887778899999999999999 88888888899999999999999999988864 6
Q ss_pred ccCCcceEEecCCCcccccCc-hhHHHHHHhhcC------CCceeeCCCcccccccccccCcccc
Q psy8551 523 LAWPELRTIDIAENPIECGCN-ILWLREMLVRRN------TSAVFCNSPAPLKYKSLISLSAEDL 580 (581)
Q Consensus 523 ~~~~~L~~L~l~~np~~c~c~-~~~~~~~~~~~~------~~~~~c~~~~~~~~~~~~~~~~~~~ 580 (581)
..+++|+.|++++|||.|+|+ ..|+.+|++... ...+.|+. .|+.+.+++++|.
T Consensus 202 ~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~~C~~----~~~~~~~~~~~~~ 262 (270)
T 2o6q_A 202 DSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEK----GGKAVLEITEKDA 262 (270)
T ss_dssp TTCTTCCEEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCCBBSS----SCSBGGGCCTTTT
T ss_pred ccccCCCEEEecCCCeeCCCccHHHHHHHHHhhccccccCccccccCC----CCeEeEEecchhh
Confidence 678999999999999999998 778888887642 23346764 4799999988874
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.8e-29 Score=260.09 Aligned_cols=355 Identities=19% Similarity=0.208 Sum_probs=217.9
Q ss_pred CCCcEEeCCCCcCcccCCcc-cccCccCcEEECCCCcceec----cCCcCCCCCCCcEEEcCCCCccccCcccc-CCCC-
Q psy8551 139 TALRILYLDDNQLRSVPTPS-FIYLGMLAELRVGLNVFTTL----ADGAFNGLGRLSALDLRGAGLTNISDNAF-RGLS- 211 (581)
Q Consensus 139 ~~L~~L~l~~~~i~~~~~~~-~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~~~l~~~~~~~l-~~~~- 211 (581)
++|++|+++++.++...... +..+++|++|++++|.++.. .+..+..+++|++|++++|.++......+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 34555555555554433222 34455555555555554421 11234445556666665555544322111 1122
Q ss_pred ---CCcEEECCCCcCCcc----CccccCCCCCCCEEECCCCcccccCCcc-----cCCCcccceeeecCCCCceeec---
Q psy8551 212 ---GLRSLVLTDNRLQSI----PTKQLSKLTRLEELEIGQNGFSMLEAGC-----FKGLSYLKRLEITGASNLTRVR--- 276 (581)
Q Consensus 212 ---~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~--- 276 (581)
+|++|++++|+++.. .+..+..+++|++|++++|.+....... ....++|+.|++++|. ++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHH
Confidence 466666666655531 1244555666666666666554322111 1223456666665542 22211
Q ss_pred -CccCCCCCCCCEEeCCCCCCcccccccccc-----CCCCCcEEecCCCCCcc-----ccccccCCCCcceEEccCCCCc
Q psy8551 277 -KGAFADNLNLETLTLNKNPKLKTIEEGALV-----GLPNLYHLNLKENAFTS-----FSESMLAWPELRTIDIAENPIE 345 (581)
Q Consensus 277 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~ 345 (581)
...+..+++|++|++++| .++......+. ..++|++|++++|.++. ++..+..+++|++|++++|.+.
T Consensus 162 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 223444578888888888 35543332232 35689999999998875 4566677889999999998764
Q ss_pred cCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccC----
Q psy8551 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP---- 421 (581)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~---- 421 (581)
... ...+....+..+++|++|++++|.++...
T Consensus 241 ~~~--------------------------------------------~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 241 DVG--------------------------------------------MAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp HHH--------------------------------------------HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred hHH--------------------------------------------HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 210 01111222334788999999999988642
Q ss_pred hhhhcCCCCCcEeecCCCcceeecccccc-----CCccccEEeecCCCCeeEe----cCCccCCCCCCCeeeCCCCCCce
Q psy8551 422 TKQLSKLTRLEELEIGQNGFSMLEAGCFK-----GLSYLKRLEITGASNLTRV----RKGAFADNLNLETLTLNKNPKLK 492 (581)
Q Consensus 422 ~~~l~~l~~L~~L~l~~~~i~~~~~~~~~-----~~~~L~~L~l~~~~~l~~~----~~~~~~~~~~L~~L~l~~~~~l~ 492 (581)
+..+..+++|++|++++|.+++.....+. ..++|++|++++|. ++.. .+..+..+++|++|++++| .++
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~ 354 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLE 354 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccc
Confidence 35677799999999999988765443332 33689999999864 4433 2334566799999999999 666
Q ss_pred eecCCccC-----CCCCccEEEcCCCcce-----eeccccccCCcceEEecCCCccccc
Q psy8551 493 IIEEDALV-----GLPNLYHLNLKENAFT-----SFSESMLAWPELRTIDIAENPIECG 541 (581)
Q Consensus 493 ~~~~~~~~-----~l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~l~~np~~c~ 541 (581)
......+. ..++|++|++++|.++ .++..+..+++|++|++++|++...
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 54333232 2789999999999998 6788888899999999999999653
No 60
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=2.6e-25 Score=212.92 Aligned_cols=216 Identities=25% Similarity=0.385 Sum_probs=172.9
Q ss_pred CCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCcccc-ccccCCCCcceEEccCCCCccCCchhhHHHHHhh
Q psy8551 281 ADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREMLVR 359 (581)
Q Consensus 281 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 359 (581)
..++++++++++++ .++.++... .+.++.|++++|.++.++ ..+..+++|++|++++|.+..
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------- 69 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------------- 69 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-------------
T ss_pred cccCCccEEECCCC-CCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-------------
Confidence 34456667777666 566665432 256777777777777654 356677777777777776531
Q ss_pred cCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCC
Q psy8551 360 RNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439 (581)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~ 439 (581)
+.. ...+++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus 70 ------------------------------------~~~--~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 70 ------------------------------------LQV--DGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFN 110 (290)
T ss_dssp ------------------------------------EEC--CSCCTTCCEEECCSSCCSSCC-CCTTTCTTCCEEECCSS
T ss_pred ------------------------------------ccC--CCCCCcCCEEECCCCcCCcCc-hhhccCCCCCEEECCCC
Confidence 111 134678888888888888766 46778888899999988
Q ss_pred cceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeec
Q psy8551 440 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS 519 (581)
Q Consensus 440 ~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 519 (581)
+++..++..|..+++|++|++++ +.++.+++..|..+++|++|++++| .++.+++..+..+++|++|++++|.++.+|
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 111 RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIP 188 (290)
T ss_dssp CCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence 88888888888889999999988 5777787788888999999999999 888998888899999999999999999999
Q ss_pred cccccCCcceEEecCCCcccccCchhHHHHHHhhc
Q psy8551 520 ESMLAWPELRTIDIAENPIECGCNILWLREMLVRR 554 (581)
Q Consensus 520 ~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~ 554 (581)
..+...++|+.+++++|||.|+|++.||.+|++++
T Consensus 189 ~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~ 223 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDN 223 (290)
T ss_dssp TTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred hhhcccccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence 99999999999999999999999999999999863
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=4.3e-25 Score=209.69 Aligned_cols=209 Identities=27% Similarity=0.446 Sum_probs=184.7
Q ss_pred CCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCc
Q psy8551 15 NPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEK 93 (581)
Q Consensus 15 ~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~ 93 (581)
..|.|.. ....+.| .+..++.+|..+++++++|+|++|+++.++. .|.++++|++|++++|.++.++...|..+++
T Consensus 10 ~~C~c~~-~~~~l~~--~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 10 GVCSCNN-NKNSVDC--SSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86 (270)
T ss_dssp CSBEEET-TTTEEEC--TTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred CCCEeCC-CCCEEEc--cCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCC
Confidence 4477754 4567899 9999999999999999999999999998875 7899999999999999999999888999999
Q ss_pred ccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCC
Q psy8551 94 LVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 173 (581)
Q Consensus 94 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n 173 (581)
|++|++++|. ++.+++..|.++++|++|++++|.++.++...+..+++|++|++++|
T Consensus 87 L~~L~l~~n~-----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 87 LETLWVTDNK-----------------------LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp CCEEECCSSC-----------------------CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCc-----------------------CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 9999999986 44555666888999999999999999998878889999999999999
Q ss_pred cceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccc
Q psy8551 174 VFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 249 (581)
Q Consensus 174 ~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 249 (581)
.++.++...+..+++|+.|++++|.++.+.+..+..+++|++|++++|+++.++...+..+++|+.|++++|.+..
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 9998888778899999999999999998888778889999999999999999887788889999999999987653
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.8e-25 Score=211.93 Aligned_cols=227 Identities=26% Similarity=0.336 Sum_probs=181.1
Q ss_pred CCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCcc
Q psy8551 16 PYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKL 94 (581)
Q Consensus 16 ~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L 94 (581)
+|.+.. ....+.| .+..+..+|..+++++++|+|++|.++.++. .+.++++|++|++++|.++.++...|..+++|
T Consensus 2 ~C~~~~-~~~~~~c--~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (276)
T 2z62_A 2 PCVEVV-PNITYQC--MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78 (276)
T ss_dssp CSEEEE-TTTEEEC--TTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTC
T ss_pred Cceecc-CCceEEe--cCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCC
Confidence 455443 3457889 9999999999999999999999999998876 78999999999999999999998889999999
Q ss_pred cEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCc
Q psy8551 95 VELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV 174 (581)
Q Consensus 95 ~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~ 174 (581)
++|++++|. ++.+.+..|.++++|++|++++|.+..++...+..+++|++|++++|.
T Consensus 79 ~~L~L~~n~-----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 79 STLILTGNP-----------------------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135 (276)
T ss_dssp CEEECTTCC-----------------------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred CEEECCCCc-----------------------cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc
Confidence 999999986 445556668888999999999999888877678888889999998888
Q ss_pred ceecc-CCcCCCCCCCcEEEcCCCCccccCccccCCCCCCc----EEECCCCcCCccCccccCCCCCCCEEECCCCcccc
Q psy8551 175 FTTLA-DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLR----SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 249 (581)
Q Consensus 175 ~~~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 249 (581)
++.+. +..+..+++|+.|++++|+++.+.+..+..+++|+ .|++++|.++.+++..+.. .+|++|++++|.++.
T Consensus 136 l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS 214 (276)
T ss_dssp CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSC
T ss_pred cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceee
Confidence 87643 45677888888888888888877766666555555 7888888888777554443 478888888887776
Q ss_pred cCCcccCCCcccceeeecCC
Q psy8551 250 LEAGCFKGLSYLKRLEITGA 269 (581)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~ 269 (581)
++...+..+++|+.+++++|
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSS
T ss_pred cCHhHhcccccccEEEccCC
Confidence 66655666666666666554
No 63
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.7e-25 Score=217.14 Aligned_cols=254 Identities=20% Similarity=0.215 Sum_probs=168.3
Q ss_pred CCCcEEECCCCcCCc--cCccccCCCCCCCEEECCC-CcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCC
Q psy8551 211 SGLRSLVLTDNRLQS--IPTKQLSKLTRLEELEIGQ-NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE 287 (581)
Q Consensus 211 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 287 (581)
.+++.|+++++.+++ ..+..+..+++|++|++++ |.+....+..+..+++|+.|++++| .+....+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~--------- 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPD--------- 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCG---------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCH---------
Confidence 467888888888875 3445677788888888874 6666555555666666666666554 22222222
Q ss_pred EEeCCCCCCccccccccccCCCCCcEEecCCCCCc-cccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCcee
Q psy8551 288 TLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF 366 (581)
Q Consensus 288 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 366 (581)
.+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.
T Consensus 120 ----------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~------------------- 164 (313)
T 1ogq_A 120 ----------------FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA------------------- 164 (313)
T ss_dssp ----------------GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE-------------------
T ss_pred ----------------HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc-------------------
Confidence 3455555555555555555 3444555555666666655544210
Q ss_pred ecCCCcccccccccCCccccccCCCCccccCccccCCCC-CCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeec
Q psy8551 367 CNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLS-GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445 (581)
Q Consensus 367 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~ 445 (581)
....+..++ .|+.|++++|.+++..+..+..++ |++|++++|.+++..
T Consensus 165 ------------------------------~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~ 213 (313)
T 1ogq_A 165 ------------------------------IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA 213 (313)
T ss_dssp ------------------------------CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC
T ss_pred ------------------------------CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC
Confidence 011233344 677777777777655556666665 777777777777777
Q ss_pred cccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCccee-ecccccc
Q psy8551 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS-FSESMLA 524 (581)
Q Consensus 446 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~ 524 (581)
+..+..+++|++|++++| .+....+. +..+++|++|++++| .+....+..+..+++|++|++++|++++ +|. ...
T Consensus 214 ~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~ 289 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKN-SLAFDLGK-VGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN 289 (313)
T ss_dssp GGGCCTTSCCSEEECCSS-EECCBGGG-CCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STT
T ss_pred CHHHhcCCCCCEEECCCC-ceeeecCc-ccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCC-Ccc
Confidence 777777777777777764 34333322 667789999999999 5554446778999999999999999994 555 478
Q ss_pred CCcceEEecCCCcccccCch
Q psy8551 525 WPELRTIDIAENPIECGCNI 544 (581)
Q Consensus 525 ~~~L~~L~l~~np~~c~c~~ 544 (581)
+++|+.+++++||..|+-+.
T Consensus 290 l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp GGGSCGGGTCSSSEEESTTS
T ss_pred ccccChHHhcCCCCccCCCC
Confidence 99999999999999887543
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.3e-24 Score=228.00 Aligned_cols=270 Identities=24% Similarity=0.277 Sum_probs=218.8
Q ss_pred hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCC
Q psy8551 11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEP 90 (581)
Q Consensus 11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~ 90 (581)
.+||..|.|.....+.+.| ++..++.+|..+++++++|+|++|.++.+|. .+++|++|++++|+++.++. .
T Consensus 29 ~~~~~~~~c~~~~l~~L~l--s~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~ 99 (622)
T 3g06_A 29 AVVQKMRACLNNGNAVLNV--GESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----L 99 (622)
T ss_dssp HHHHHHHHHHHHCCCEEEC--CSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----C
T ss_pred ccCcccccccCCCCcEEEe--cCCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----C
Confidence 4566677776534567888 9999999999999999999999999999987 67899999999999998885 6
Q ss_pred CCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEEC
Q psy8551 91 QEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 170 (581)
Q Consensus 91 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L 170 (581)
+++|++|++++|.+ +.++. .+++|+.|++++|+++.++. .+++|++|++
T Consensus 100 l~~L~~L~Ls~N~l-----------------------~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~L 148 (622)
T 3g06_A 100 PPGLLELSIFSNPL-----------------------THLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSV 148 (622)
T ss_dssp CTTCCEEEECSCCC-----------------------CCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEEC
T ss_pred CCCCCEEECcCCcC-----------------------CCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEEC
Confidence 78999999999864 22322 45788899999998888775 2478999999
Q ss_pred CCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCccccc
Q psy8551 171 GLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML 250 (581)
Q Consensus 171 ~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 250 (581)
++|.+++++. .+++|+.|++++|.++.++ ..+++|+.|++++|+++.++. .+++|+.|++++|.++.+
T Consensus 149 s~N~l~~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l 216 (622)
T 3g06_A 149 SDNQLASLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL 216 (622)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC
T ss_pred cCCcCCCcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccccc
Confidence 9998887653 3468889999999888765 346789999999998888774 247889999999988866
Q ss_pred CCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccC
Q psy8551 251 EAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA 330 (581)
Q Consensus 251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 330 (581)
+. .+++|+.|++++| .++.++ ..+++|+.|++++| .++.++. .+++|+.|++++|.++.+|..+..
T Consensus 217 ~~----~~~~L~~L~Ls~N-~L~~lp----~~l~~L~~L~Ls~N-~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~ 282 (622)
T 3g06_A 217 PA----LPSGLKELIVSGN-RLTSLP----VLPSELKELMVSGN-RLTSLPM----LPSGLLSLSVYRNQLTRLPESLIH 282 (622)
T ss_dssp CC----CCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCCSCCGGGGG
T ss_pred CC----CCCCCCEEEccCC-ccCcCC----CCCCcCcEEECCCC-CCCcCCc----ccccCcEEeCCCCCCCcCCHHHhh
Confidence 54 2477899999886 455544 34578999999999 6777765 568999999999999999998999
Q ss_pred CCCcceEEccCCCCcc
Q psy8551 331 WPELRTIDIAENPIEC 346 (581)
Q Consensus 331 ~~~L~~L~l~~~~~~~ 346 (581)
+++|+.|++++|++.+
T Consensus 283 l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 283 LSSETTVNLEGNPLSE 298 (622)
T ss_dssp SCTTCEEECCSCCCCH
T ss_pred ccccCEEEecCCCCCC
Confidence 9999999999999864
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.2e-24 Score=205.71 Aligned_cols=228 Identities=23% Similarity=0.402 Sum_probs=149.9
Q ss_pred CCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCC
Q psy8551 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTS 363 (581)
Q Consensus 285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~ 363 (581)
++++|++++| .++.++...+..+++|++|++++|.++.++. .+..+++|++|++++|.+.
T Consensus 29 ~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------ 89 (276)
T 2z62_A 29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ------------------ 89 (276)
T ss_dssp TCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC------------------
T ss_pred CccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC------------------
Confidence 4555555555 4445544445555666666666665555443 4455556666666655442
Q ss_pred ceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCccee
Q psy8551 364 AVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 443 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~ 443 (581)
.+....|.++++|++|++++|.+.+.++..+..+++|++|++++|.++.
T Consensus 90 -------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 90 -------------------------------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp -------------------------------EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred -------------------------------ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 1222334555666666666666666555456666666666666666665
Q ss_pred ec-cccccCCccccEEeecCCCCeeEecCCccCCCCCCC----eeeCCCCCCceeecCCccCCCCCccEEEcCCCcceee
Q psy8551 444 LE-AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE----TLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF 518 (581)
Q Consensus 444 ~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l 518 (581)
.. +..+..+++|++|++++ +.++.+....+..+++|+ +|++++| .+..+++..+.. .+|++|++++|.++.+
T Consensus 139 ~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~-~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 139 FKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKE-IRLKELALDTNQLKSV 215 (276)
T ss_dssp CCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCS-CCEEEEECCSSCCSCC
T ss_pred ecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhhhccccceeeecCCC-cccccCccccCC-CcccEEECCCCceeec
Confidence 42 55566666666666666 345555555555555555 7899999 778887665544 4899999999999998
Q ss_pred ccc-cccCCcceEEecCCCcccccCc-hhHHHHHHhhc---CCCceeeCCCc
Q psy8551 519 SES-MLAWPELRTIDIAENPIECGCN-ILWLREMLVRR---NTSAVFCNSPA 565 (581)
Q Consensus 519 ~~~-~~~~~~L~~L~l~~np~~c~c~-~~~~~~~~~~~---~~~~~~c~~~~ 565 (581)
+.. +..+++|++|++++||+.|+|+ +.|+..|.+.. ......|..|.
T Consensus 216 ~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~~~~~~~~~~C~~~~ 267 (276)
T 2z62_A 216 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 267 (276)
T ss_dssp CTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBCSCCBBTTTC
T ss_pred CHhHhcccccccEEEccCCcccccCCchHHHHHHHHhcccccCCCceeeCCC
Confidence 865 4679999999999999999997 78999998774 33445788774
No 66
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.92 E-value=1.4e-24 Score=198.89 Aligned_cols=191 Identities=29% Similarity=0.538 Sum_probs=169.4
Q ss_pred cccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCC
Q psy8551 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN 465 (581)
Q Consensus 386 ~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~ 465 (581)
+.+....+..++... .++++.|++++|.++.+++..|..+++|++|++++|.++...+..|..+++|++|++++ +.
T Consensus 16 v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~ 91 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NK 91 (220)
T ss_dssp EECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SC
T ss_pred EEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-Cc
Confidence 344455566665543 26899999999999999988899999999999999999999999999999999999998 57
Q ss_pred eeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-ccccCCcceEEecCCCcccccCch
Q psy8551 466 LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNI 544 (581)
Q Consensus 466 l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~np~~c~c~~ 544 (581)
++.++...|.++++|++|++++| .+..+++..+..+++|++|++++|.++.++. .+..+++|++|++++|||.|+|++
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 88888888999999999999999 8888888889999999999999999998875 477799999999999999999999
Q ss_pred hHHHHHHhhc--CCCceeeCCCcccccccccccCccccC
Q psy8551 545 LWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSAEDLG 581 (581)
Q Consensus 545 ~~~~~~~~~~--~~~~~~c~~~~~~~~~~~~~~~~~~~~ 581 (581)
+|+.+|.... ....+.|..|..++|+.+.+++++|+.
T Consensus 171 ~~l~~~l~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~ 209 (220)
T 2v9t_B 171 KWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFR 209 (220)
T ss_dssp HHHHHHHHHCCCBCSCCBEEESGGGTTCBGGGSCGGGCC
T ss_pred HHHHHHHHhCCCCccCCCcCCchHHcCCchhhCCHHHCc
Confidence 9999998764 345568999999999999999998863
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=7.6e-27 Score=248.49 Aligned_cols=326 Identities=15% Similarity=0.096 Sum_probs=177.5
Q ss_pred cCccCcEEECCCCcceeccC----CcCCCCCCCcEEEcCCCCccccCc----cccCCCCCCcEEECCCCcCCccCccccC
Q psy8551 161 YLGMLAELRVGLNVFTTLAD----GAFNGLGRLSALDLRGAGLTNISD----NAFRGLSGLRSLVLTDNRLQSIPTKQLS 232 (581)
Q Consensus 161 ~~~~L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~L~~~~l~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 232 (581)
.+++|++|++++|.+++... ..+..+++|+.|+++++.++.+.. ..+..+++|+.|++.+|.+.+++ ..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHh
Confidence 45556666665555443211 112345556666666655542222 12234566666666666555544 3455
Q ss_pred CCCCCCEEECCCCccc---ccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccc-cccccCC
Q psy8551 233 KLTRLEELEIGQNGFS---MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE-EGALVGL 308 (581)
Q Consensus 233 ~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~ 308 (581)
.+++|++|+++..... ......+..+++|+.+.+.+.. . ...+..+..+++|++|++++|. ++... ...+..+
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~-~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~ 317 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-P-NEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKC 317 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-T-TTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-h-hHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhC
Confidence 5666666666532111 1111234455566666665421 1 1112234455677777777764 33222 1235667
Q ss_pred CCCcEEecCCCCCc--cccccccCCCCcceEEccC-----------CCCccCCchhhHHHHHhhcCCCceeecCCCcccc
Q psy8551 309 PNLYHLNLKENAFT--SFSESMLAWPELRTIDIAE-----------NPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 375 (581)
Q Consensus 309 ~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 375 (581)
++|+.|++. +.+. .++.....+++|++|++++ +.+...
T Consensus 318 ~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~---------------------------- 368 (592)
T 3ogk_B 318 PNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR---------------------------- 368 (592)
T ss_dssp TTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH----------------------------
T ss_pred cCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH----------------------------
Confidence 777777777 3333 2333334567777777773 111100
Q ss_pred cccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcC-CCCCcEeecC----CCcceee-----c
Q psy8551 376 KSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK-LTRLEELEIG----QNGFSML-----E 445 (581)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~----~~~i~~~-----~ 445 (581)
. ....+.++++|++|+++.+.+++.....+.. +++|++|+++ .+.+++. .
T Consensus 369 -------------------~-~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 369 -------------------G-LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp -------------------H-HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred -------------------H-HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 0 0011223677888888777776655455544 7788888885 4555543 1
Q ss_pred cccccCCccccEEeecCCCC-eeEecCCcc-CCCCCCCeeeCCCCCCcee-ecCCccCCCCCccEEEcCCCccee--ecc
Q psy8551 446 AGCFKGLSYLKRLEITGASN-LTRVRKGAF-ADNLNLETLTLNKNPKLKI-IEEDALVGLPNLYHLNLKENAFTS--FSE 520 (581)
Q Consensus 446 ~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~-~~~~~L~~L~l~~~~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~--l~~ 520 (581)
...+..+++|++|+++.|.. +++.....+ ..+++|++|++++|. ++. ..+..+.++++|++|++++|.++. ++.
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 22245677888888866442 333222222 246778888888883 433 222345677888888888888763 444
Q ss_pred ccccCCcceEEecCCCcccc
Q psy8551 521 SMLAWPELRTIDIAENPIEC 540 (581)
Q Consensus 521 ~~~~~~~L~~L~l~~np~~c 540 (581)
.+..+++|++|++++|+++.
T Consensus 508 ~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCT
T ss_pred HHHhcCccCeeECcCCcCCH
Confidence 45567888888888888654
No 68
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=2.2e-23 Score=195.63 Aligned_cols=210 Identities=26% Similarity=0.440 Sum_probs=174.8
Q ss_pred CCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccC
Q psy8551 310 NLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCA 389 (581)
Q Consensus 310 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 389 (581)
..+.++++++.++.+|..+. +.++.|++++|.+.
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~-------------------------------------------- 48 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLA-------------------------------------------- 48 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCC--------------------------------------------
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcC--------------------------------------------
Confidence 46678888888888877654 57888888887654
Q ss_pred CCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEe
Q psy8551 390 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV 469 (581)
Q Consensus 390 ~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 469 (581)
.+....|.++++|++|++++|.+++.++..+..+++|++|++++|.++..++..+..+++|++|++++ +.++.+
T Consensus 49 -----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~ 122 (251)
T 3m19_A 49 -----TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG-NQLKSL 122 (251)
T ss_dssp -----CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCC
T ss_pred -----ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCC-CcCCCc
Confidence 23344567788999999999999988888889999999999999999988888889999999999998 578888
Q ss_pred cCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-ccccCCcceEEecCCCccccc-CchhHH
Q psy8551 470 RKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECG-CNILWL 547 (581)
Q Consensus 470 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~np~~c~-c~~~~~ 547 (581)
.+..|..+++|++|++++| .++.+++..+..+++|++|++++|.++.++. .+..+++|++|++++||+.|+ |++.|+
T Consensus 123 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l 201 (251)
T 3m19_A 123 PSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYL 201 (251)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHH
T ss_pred ChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHH
Confidence 8888899999999999999 8888888889999999999999999998875 577899999999999999999 999999
Q ss_pred HHHHhhc--------------CCCceeeCCCcccccccc
Q psy8551 548 REMLVRR--------------NTSAVFCNSPAPLKYKSL 572 (581)
Q Consensus 548 ~~~~~~~--------------~~~~~~c~~~~~~~~~~~ 572 (581)
.+|++.. .+..+.|..+..+++.+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 240 (251)
T 3m19_A 202 SQWIRENSNKVKDGTGQNLHESPDGVTCSDGKVVRTVTN 240 (251)
T ss_dssp HHHHHHSGGGBCC-------CCGGGCBBTTSCBGGGCCT
T ss_pred HHHHHhcccceeeccCcccccCCCcCccCCCcEEeeech
Confidence 9999764 233456776654444433
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.9e-24 Score=210.23 Aligned_cols=248 Identities=19% Similarity=0.267 Sum_probs=176.2
Q ss_pred CcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCC
Q psy8551 213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN 292 (581)
Q Consensus 213 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 292 (581)
++..+++.+.+...+...+..+++|++|++++|.++...+..+..++ +|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-------------------------~L~~L~Ls 66 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-------------------------KLELLNLS 66 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT-------------------------TCCEEECT
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC-------------------------cCCEEECC
Confidence 34445555555544444455566677777777766655544454444 45555555
Q ss_pred CCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCc
Q psy8551 293 KNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAP 372 (581)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 372 (581)
+| .+...++ +..+++|+.|++++|.++.++. .++|++|++++|.+..
T Consensus 67 ~n-~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~-------------------------- 113 (317)
T 3o53_A 67 SN-VLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISR-------------------------- 113 (317)
T ss_dssp TS-CCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSE--------------------------
T ss_pred CC-cCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCC--------------------------
Confidence 55 3333332 5666777777777777665553 2677777777776531
Q ss_pred ccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccc-cC
Q psy8551 373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF-KG 451 (581)
Q Consensus 373 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~-~~ 451 (581)
+ ....+++|++|++++|.+++.++..+..+++|++|++++|.++...+..+ ..
T Consensus 114 -----------------------~---~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 167 (317)
T 3o53_A 114 -----------------------V---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167 (317)
T ss_dssp -----------------------E---EECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred -----------------------c---CccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc
Confidence 0 11125678888888888888777777888888888888888888766655 46
Q ss_pred CccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEE
Q psy8551 452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI 531 (581)
Q Consensus 452 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L 531 (581)
+++|++|++++| .++.+.. ...+++|++|++++| .+..+++. +..+++|++|++++|.++.+|..+..+++|+.|
T Consensus 168 l~~L~~L~L~~N-~l~~~~~--~~~l~~L~~L~Ls~N-~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 168 SDTLEHLNLQYN-FIYDVKG--QVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242 (317)
T ss_dssp TTTCCEEECTTS-CCCEEEC--CCCCTTCCEEECCSS-CCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEE
T ss_pred cCcCCEEECCCC-cCccccc--ccccccCCEEECCCC-cCCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEE
Confidence 788888888884 5655533 234889999999999 78888655 888999999999999999999999899999999
Q ss_pred ecCCCcccccCchhHHHH
Q psy8551 532 DIAENPIECGCNILWLRE 549 (581)
Q Consensus 532 ~l~~np~~c~c~~~~~~~ 549 (581)
++++|++.|++...|+..
T Consensus 243 ~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp ECTTCCCBHHHHHHHHHT
T ss_pred EccCCCccCcCHHHHHhc
Confidence 999999999887766653
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=4e-27 Score=250.58 Aligned_cols=393 Identities=12% Similarity=0.073 Sum_probs=256.8
Q ss_pred CCCcccEEEcCCCceeecCCCCCCC-CCc-ccEEeCCCCCCCCcccccccCCcccccccCccccccc-chhhcCCCCCCc
Q psy8551 66 IYLSLQHVDLSHTTWLIIPIGGFEP-QEK-LVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRI-DQACFEGLTALR 142 (581)
Q Consensus 66 ~~~~L~~L~ls~~~l~~~~~~~~~~-l~~-L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~-~~~~l~~~~~L~ 142 (581)
.+++|++|+|++|.++......+.. +++ |++|++++|.. ++.. .......+++|+
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~----------------------~~~~~l~~~~~~~~~L~ 167 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG----------------------FTTDGLLSIVTHCRKIK 167 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE----------------------EEHHHHHHHHHHCTTCS
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC----------------------cCHHHHHHHHhhCCCCC
Confidence 5677777777777655332222332 233 77777776641 1111 111234689999
Q ss_pred EEeCCCCcCcccCCc----ccccCccCcEEECCCCcceecc----CCcCCCCCCCcEEEcCCCCccccCccccCCCCCCc
Q psy8551 143 ILYLDDNQLRSVPTP----SFIYLGMLAELRVGLNVFTTLA----DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLR 214 (581)
Q Consensus 143 ~L~l~~~~i~~~~~~----~~~~~~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 214 (581)
+|++++|.+++.... .+..+++|++|++++|.++++. +..+.++++|+.|++++|.+..+. ..+..+++|+
T Consensus 168 ~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~ 246 (592)
T 3ogk_B 168 TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLE 246 (592)
T ss_dssp EEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCC
T ss_pred EEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHH
Confidence 999999987665432 3456889999999999886322 223457899999999999887754 4677889999
Q ss_pred EEECCCCcCC---ccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecC-ccCCCCCCCCEEe
Q psy8551 215 SLVLTDNRLQ---SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRK-GAFADNLNLETLT 290 (581)
Q Consensus 215 ~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~ 290 (581)
+|+++..... ......+..+++|+.++++++....+ +..+..+++|+.|++++|. +..... ..+..+++|++|+
T Consensus 247 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp EEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEE
T ss_pred hhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEe
Confidence 9999753222 11224567788999999987643333 3346678899999999876 433322 3357789999999
Q ss_pred CCCCCCcccc-ccccccCCCCCcEEecCC-----------CCCc--cccccccCCCCcceEEccCCCCccCCchhhHHHH
Q psy8551 291 LNKNPKLKTI-EEGALVGLPNLYHLNLKE-----------NAFT--SFSESMLAWPELRTIDIAENPIECGCNILWLREM 356 (581)
Q Consensus 291 l~~~~~~~~~-~~~~~~~~~~L~~L~l~~-----------~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 356 (581)
+.++ +.+. .......+++|++|++.+ +.++ .+......+++|++|++..+.+....
T Consensus 325 L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~-------- 394 (592)
T 3ogk_B 325 TRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES-------- 394 (592)
T ss_dssp EEGG--GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH--------
T ss_pred ccCc--cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH--------
Confidence 9844 3322 222345788999999993 4555 23333446899999999776654210
Q ss_pred HhhcCCCceeecCCCcccccccccCCccccccCCCCccccCcccc-CCCCCCCEEEcC----CCcCCccCh-----hhhc
Q psy8551 357 LVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAF-RGLSGLRSLVLT----DNRLQSIPT-----KQLS 426 (581)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~-~~~~~L~~L~l~----~n~l~~~~~-----~~l~ 426 (581)
...+ ..+++|+.|+++ .+.+++.+. ..+.
T Consensus 395 -----------------------------------------~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~ 433 (592)
T 3ogk_B 395 -----------------------------------------LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433 (592)
T ss_dssp -----------------------------------------HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH
T ss_pred -----------------------------------------HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH
Confidence 0111 126789999996 556766432 2356
Q ss_pred CCCCCcEeecCCCc--ceeeccccc-cCCccccEEeecCCCCeeEe-cCCccCCCCCCCeeeCCCCCCceee-cCCccCC
Q psy8551 427 KLTRLEELEIGQNG--FSMLEAGCF-KGLSYLKRLEITGASNLTRV-RKGAFADNLNLETLTLNKNPKLKII-EEDALVG 501 (581)
Q Consensus 427 ~l~~L~~L~l~~~~--i~~~~~~~~-~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~ 501 (581)
.+++|++|++++|. +++.....+ ..+++|++|++++|. +++. .+..+..+++|++|++++|+ ++.. .+..+..
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~ 511 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTK 511 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHH
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHh
Confidence 78999999997643 554433333 358889999999764 4432 22345678999999999995 4432 2233457
Q ss_pred CCCccEEEcCCCcceee--ccccccCCcceEEecCCC
Q psy8551 502 LPNLYHLNLKENAFTSF--SESMLAWPELRTIDIAEN 536 (581)
Q Consensus 502 l~~L~~L~l~~n~l~~l--~~~~~~~~~L~~L~l~~n 536 (581)
+++|++|++++|+++.. ......+|.++...+..+
T Consensus 512 l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 89999999999998842 223345777777666654
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=6.4e-23 Score=215.16 Aligned_cols=268 Identities=21% Similarity=0.234 Sum_probs=195.9
Q ss_pred cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ 124 (581)
Q Consensus 45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~ 124 (581)
.++++|+++++.++.+|..+. ++|++|++++|.++.++. .+++|++|++++|.+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l-------------------- 93 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQL-------------------- 93 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCC--------------------
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcC--------------------
Confidence 468999999999999998665 899999999999998885 468899999999863
Q ss_pred ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD 204 (581)
Q Consensus 125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 204 (581)
+.++. .+++|++|++++|.++.++. .+++|++|++++|.++.++. .+++|++|++++|.++.++.
T Consensus 94 ---~~lp~----~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 94 ---TSLPV----LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA 158 (622)
T ss_dssp ---SCCCC----CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC
T ss_pred ---CcCCC----CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCC
Confidence 33332 56889999999999888775 46788999999998887664 24788888888888876543
Q ss_pred cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCC
Q psy8551 205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL 284 (581)
Q Consensus 205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 284 (581)
...+|+.|++++|.++.++ ..+++|+.|++++|.++.++.. .+
T Consensus 159 ----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~----~~------------------------- 201 (622)
T 3g06_A 159 ----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPTL----PS------------------------- 201 (622)
T ss_dssp ----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCC----CT-------------------------
T ss_pred ----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCCc----cc-------------------------
Confidence 3467888888888888876 3357788888888877654321 13
Q ss_pred CCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCc
Q psy8551 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA 364 (581)
Q Consensus 285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~ 364 (581)
+|+.|++++| .+..++. .+++|+.|++++|.++.+| ..+++|++|++++|.+..
T Consensus 202 ~L~~L~L~~N-~l~~l~~----~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~------------------ 255 (622)
T 3g06_A 202 ELYKLWAYNN-RLTSLPA----LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTS------------------ 255 (622)
T ss_dssp TCCEEECCSS-CCSSCCC----CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC------------------
T ss_pred hhhEEECcCC-cccccCC----CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCc------------------
Confidence 4555555555 3444443 2367777888888777766 344677888888776531
Q ss_pred eeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceee
Q psy8551 365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML 444 (581)
Q Consensus 365 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~ 444 (581)
++. .+++|+.|++++|.++.++ ..+..+++|+.|++++|.+++.
T Consensus 256 -------------------------------lp~----~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 256 -------------------------------LPM----LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp -------------------------------CCC----CCTTCCEEECCSSCCCSCC-GGGGGSCTTCEEECCSCCCCHH
T ss_pred -------------------------------CCc----ccccCcEEeCCCCCCCcCC-HHHhhccccCEEEecCCCCCCc
Confidence 111 2567888888888888765 4678888888888888888876
Q ss_pred ccccccCC
Q psy8551 445 EAGCFKGL 452 (581)
Q Consensus 445 ~~~~~~~~ 452 (581)
.+..+..+
T Consensus 300 ~~~~l~~L 307 (622)
T 3g06_A 300 TLQALREI 307 (622)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHhc
Confidence 66554433
No 72
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.90 E-value=1.8e-23 Score=206.29 Aligned_cols=247 Identities=21% Similarity=0.301 Sum_probs=196.0
Q ss_pred CCCC-CCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCce-eecCCCCCC
Q psy8551 13 CMNP-YEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTW-LIIPIGGFE 89 (581)
Q Consensus 13 ~~~~-c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l-~~~~~~~~~ 89 (581)
||.. |+|.. +++.| ++.++++||..+++++++|+|++|+|+.+|. .|.++++|++|+|++|++ +.++..+|.
T Consensus 2 Cp~~~C~C~~---~~v~C--~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~ 76 (350)
T 4ay9_X 2 CHHRICHCSN---RVFLC--QESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76 (350)
T ss_dssp CCCSSSEEET---TEEEE--ESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred CCCCccEeeC---CEEEe--cCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence 7765 99976 67999 9999999999999999999999999999986 689999999999999986 567888899
Q ss_pred CCCcccEE-eCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEE
Q psy8551 90 PQEKLVEL-QLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 168 (581)
Q Consensus 90 ~l~~L~~L-~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 168 (581)
++++++++ .+++| +++.+.+..|..+++|++|++++|++..++...+....++..+
T Consensus 77 ~L~~l~~~l~~~~N-----------------------~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 133 (350)
T 4ay9_X 77 NLPKLHEIRIEKAN-----------------------NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133 (350)
T ss_dssp SCTTCCEEEEEEET-----------------------TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE
T ss_pred cchhhhhhhcccCC-----------------------cccccCchhhhhccccccccccccccccCCchhhcccchhhhh
Confidence 99887764 44444 3677778889999999999999999999888777777788888
Q ss_pred ECCC-CcceeccCCcCCCCC-CCcEEEcCCCCccccCccccCCCCCCcEEECC-CCcCCccCccccCCCCCCCEEECCCC
Q psy8551 169 RVGL-NVFTTLADGAFNGLG-RLSALDLRGAGLTNISDNAFRGLSGLRSLVLT-DNRLQSIPTKQLSKLTRLEELEIGQN 245 (581)
Q Consensus 169 ~L~~-n~~~~~~~~~l~~l~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~~ 245 (581)
++.+ +.+..++...|..+. .++.|++++|+++.+.+..+. ..+|+.+++. +|.++.++..+|..+++|++|++++|
T Consensus 134 ~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred hhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 8855 678888877777764 688999999999988776554 4678999987 47888998888899999999999999
Q ss_pred cccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCC
Q psy8551 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK 293 (581)
Q Consensus 246 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 293 (581)
.++.++...+.+ |+.|.+.++..++.++. +..+++|+.+++.+
T Consensus 213 ~l~~lp~~~~~~---L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 213 RIHSLPSYGLEN---LKKLRARSTYNLKKLPT--LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCCSSSCTT---CCEEECTTCTTCCCCCC--TTTCCSCCEEECSC
T ss_pred CcCccChhhhcc---chHhhhccCCCcCcCCC--chhCcChhhCcCCC
Confidence 998887765544 44444444444444442 44455555555543
No 73
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.90 E-value=4.9e-23 Score=188.56 Aligned_cols=190 Identities=25% Similarity=0.472 Sum_probs=165.7
Q ss_pred cccCCCCccccCccccCCCCCCCEEEcCCCcCCccCh-hhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCC
Q psy8551 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 464 (581)
Q Consensus 386 ~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~ 464 (581)
+.+....+..++... .+.+++|++++|.++.+++ ..+..+++|++|++++|.++...+..|..+++|++|++++ +
T Consensus 16 l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N 91 (220)
T 2v70_A 16 VDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS-N 91 (220)
T ss_dssp EECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-S
T ss_pred eEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC-C
Confidence 344455555665433 3567999999999998853 5688999999999999999999998999999999999998 5
Q ss_pred CeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceee-ccccccCCcceEEecCCCcccccCc
Q psy8551 465 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENPIECGCN 543 (581)
Q Consensus 465 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~np~~c~c~ 543 (581)
.++.+.+..|.++++|++|++++| .+..+++..+.++++|++|++++|.++.+ |..+..+++|++|++++|||.|+|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 788888888999999999999999 78888788899999999999999999987 6778889999999999999999999
Q ss_pred hhHHHHHHhhcC--CCceeeCCCcccccccccccCcccc
Q psy8551 544 ILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDL 580 (581)
Q Consensus 544 ~~~~~~~~~~~~--~~~~~c~~~~~~~~~~~~~~~~~~~ 580 (581)
+.|+.+|..... .....|..|..++|+++.+++.+++
T Consensus 171 l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~ 209 (220)
T 2v70_A 171 LAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDF 209 (220)
T ss_dssp GHHHHHHHHHSCCBCCCCEEEESGGGTTEEGGGSCGGGC
T ss_pred hHHHHHHHHhcCccccCCccCCChHHCCCChhhCCHHHc
Confidence 999999998643 3445899999999999999998875
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=1.5e-23 Score=203.94 Aligned_cols=244 Identities=19% Similarity=0.188 Sum_probs=150.6
Q ss_pred ccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcc
Q psy8551 47 IQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQN 125 (581)
Q Consensus 47 l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~ 125 (581)
++..+++.+.+...+. .+..+++|++|++++|.++.+++..|..+++|++|++++|.+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--------------------- 70 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--------------------- 70 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC---------------------
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC---------------------
Confidence 4444555555554432 344566777777777777776655677777777777777653
Q ss_pred cccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCcc
Q psy8551 126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN 205 (581)
Q Consensus 126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 205 (581)
++..+ +..+++|++|++++|.++.++. .++|++|++++|.+++++.. .+++|+.|++++|.++.+.+.
T Consensus 71 --~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~ 138 (317)
T 3o53_A 71 --YETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL 138 (317)
T ss_dssp --EEEEE--ETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB
T ss_pred --Ccchh--hhhcCCCCEEECcCCccccccC-----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch
Confidence 22222 5666777777777776665442 36677777777766665543 245666666766666666555
Q ss_pred ccCCCCCCcEEECCCCcCCccCcccc-CCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCC
Q psy8551 206 AFRGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL 284 (581)
Q Consensus 206 ~l~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 284 (581)
.+..+++|++|++++|.++.+++..+ ..+++|++|++++|.++..+.. ..++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------------~~l~ 191 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ---------------------------VVFA 191 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC---------------------------CCCT
T ss_pred hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc---------------------------cccc
Confidence 56666666666666666665544433 3456666666666665544221 1245
Q ss_pred CCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhh
Q psy8551 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILW 352 (581)
Q Consensus 285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 352 (581)
+|++|++++| .+..++.. +..+++|+.|++++|.++.+|..+..+++|+.|++++|++.|.....|
T Consensus 192 ~L~~L~Ls~N-~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 192 KLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp TCCEEECCSS-CCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred cCCEEECCCC-cCCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence 5666666666 45555553 666677777777777777777666667777777777777765544444
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=3.3e-22 Score=191.31 Aligned_cols=218 Identities=28% Similarity=0.379 Sum_probs=194.8
Q ss_pred cCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCc
Q psy8551 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLR 214 (581)
Q Consensus 135 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 214 (581)
+.++++++.+++++++++.+|... .+++++|++++|.++.+.+..+..+++|+.|++++|.++.+.. ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 567889999999999999888633 3689999999999998888889999999999999999988765 36789999
Q ss_pred EEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCC
Q psy8551 215 SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN 294 (581)
Q Consensus 215 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 294 (581)
+|++++|+++.++ ..+..+++|++|++++|.++.+++..|..+++|+.|++++| .+..+++..|..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCSSCC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCcCc-hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC
Confidence 9999999999888 46788999999999999999998888999999999999986 677788888889999999999999
Q ss_pred CCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhc
Q psy8551 295 PKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR 360 (581)
Q Consensus 295 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 360 (581)
.++.++...+..+++|+.|++++|.++.+|..+...+.|+.+++.+|++.|.|...|+..+....
T Consensus 159 -~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~ 223 (290)
T 1p9a_G 159 -NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDN 223 (290)
T ss_dssp -CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred -cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence 78889888889999999999999999999999999999999999999999999998888776543
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=4.8e-23 Score=193.24 Aligned_cols=186 Identities=27% Similarity=0.447 Sum_probs=128.3
Q ss_pred cCCCC--CCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCC
Q psy8551 12 KCMNP--YEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGF 88 (581)
Q Consensus 12 ~~~~~--c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~ 88 (581)
+||.+ |+|.. ..+.+.| ++..++.+|..+++++++|+|++|.+..++. .+.++++|++|++++|.++.++...|
T Consensus 3 ~Cp~~~gC~C~~-~~~~l~~--~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 79 (251)
T 3m19_A 3 TCETVTGCTCNE-GKKEVDC--QGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF 79 (251)
T ss_dssp -CHHHHSSEEEG-GGTEEEC--TTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cCCCCCceEcCC-CCeEEec--CCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh
Confidence 57877 88854 4567889 9999999999999999999999999988765 68889999999999998888887778
Q ss_pred CCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEE
Q psy8551 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 168 (581)
Q Consensus 89 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 168 (581)
..+++|++|++++|. ++.+++..|..+++|++|++++|.++.++...+..+++|++|
T Consensus 80 ~~l~~L~~L~L~~n~-----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 80 DDLTELGTLGLANNQ-----------------------LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136 (251)
T ss_dssp TTCTTCCEEECTTSC-----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCcCCEEECCCCc-----------------------ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEE
Confidence 888888888888775 334444556666777777777777666665555556666666
Q ss_pred ECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcC
Q psy8551 169 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRL 223 (581)
Q Consensus 169 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l 223 (581)
++++|.++.+++..+..+++|+.|++++|.++.+.+..+..+++|+.|++++|.+
T Consensus 137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 6666665555554455555555555555555544444444444444444444443
No 77
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1e-23 Score=205.81 Aligned_cols=241 Identities=17% Similarity=0.162 Sum_probs=190.6
Q ss_pred CCccccccCCCccCCCC----CCcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCC
Q psy8551 26 DPSCNLQEANLDVIPSH----SNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNH 101 (581)
Q Consensus 26 ~~~c~~~~~~l~~ip~~----~~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~ 101 (581)
...|.|.+..+..++.. ..+++++|+|+++.++.+|..+..+++|++|++++|.++.++ ..+..+++|++|++++
T Consensus 58 ~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~ 136 (328)
T 4fcg_A 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLAR 136 (328)
T ss_dssp TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCC-SCGGGGTTCSEEEEES
T ss_pred ccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchh-HHHhccCCCCEEECCC
Confidence 34555555555443332 236899999999999999999999999999999999999776 5789999999999999
Q ss_pred CCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCccc---------ccCccCcEEECCC
Q psy8551 102 NKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF---------IYLGMLAELRVGL 172 (581)
Q Consensus 102 n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~---------~~~~~L~~L~L~~ 172 (581)
|.+ +.+ +..++++++|++|++++|++....+..+ ..+++|++|++++
T Consensus 137 n~l-----------------------~~l-p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 137 NPL-----------------------RAL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp CCC-----------------------CCC-CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE
T ss_pred Ccc-----------------------ccC-cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcC
Confidence 864 223 3347788899999998865554333333 3488999999999
Q ss_pred CcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCC
Q psy8551 173 NVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 252 (581)
Q Consensus 173 n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 252 (581)
|.++.++. .+.++++|+.|++++|.++.+++ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+
T Consensus 193 n~l~~lp~-~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 193 TGIRSLPA-SIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp ECCCCCCG-GGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred CCcCcchH-hhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 98886554 58888999999999998887665 57888999999999988877666778889999999999988877777
Q ss_pred cccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCC
Q psy8551 253 GCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN 294 (581)
Q Consensus 253 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 294 (581)
..+..+++|+.|++++|...+.++. .+..+++++.+++..+
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPH 311 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEECCGG
T ss_pred hhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeCCHH
Confidence 7788889999999998876665554 5778888998888765
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=5.3e-24 Score=206.67 Aligned_cols=244 Identities=17% Similarity=0.140 Sum_probs=171.6
Q ss_pred cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCC-CC-------CCCcccEEeCCCCCCCCcccccccCCc
Q psy8551 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGG-FE-------PQEKLVELQLNHNKHFPQQIVCSIISP 116 (581)
Q Consensus 45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~-~~-------~l~~L~~L~l~~n~~~~~~~~~~~~~~ 116 (581)
++++++++++|.+ .+|..+... |++|++++|.++...... +. ++++|++|++++|.+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l------------ 107 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV------------ 107 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC------------
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc------------
Confidence 5788889999988 777655544 888899998886533211 22 577888888888753
Q ss_pred ccccccCcccccccchhhc--CCCCCCcEEeCCCCcCcccCCcccccC-----ccCcEEECCCCcceeccCCcCCCCCCC
Q psy8551 117 RRVEIFGQNRISRIDQACF--EGLTALRILYLDDNQLRSVPTPSFIYL-----GMLAELRVGLNVFTTLADGAFNGLGRL 189 (581)
Q Consensus 117 ~~L~~l~~~~l~~~~~~~l--~~~~~L~~L~l~~~~i~~~~~~~~~~~-----~~L~~L~L~~n~~~~~~~~~l~~l~~L 189 (581)
++..+..+ +.+++|++|++++|.+++.+ ..+..+ ++|++|++++|.+.++++..+..+++|
T Consensus 108 -----------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 108 -----------TGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp -----------BSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred -----------cchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 32223323 77888899999988888874 466655 788888888888888887778888888
Q ss_pred cEEEcCCCCccccC--cccc--CCCCCCcEEECCCCcCCc---cCccccCCCCCCCEEECCCCcccccCC-cccCCCccc
Q psy8551 190 SALDLRGAGLTNIS--DNAF--RGLSGLRSLVLTDNRLQS---IPTKQLSKLTRLEELEIGQNGFSMLEA-GCFKGLSYL 261 (581)
Q Consensus 190 ~~L~L~~~~l~~~~--~~~l--~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L 261 (581)
+.|++++|++.+.. +..+ ..+++|++|++++|+++. ++...+..+++|++|++++|.+....+ ..+.
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----- 250 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD----- 250 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC-----
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh-----
Confidence 88888888765421 1122 677888888888888873 333444567788888888887765442 2222
Q ss_pred ceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccC
Q psy8551 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAE 341 (581)
Q Consensus 262 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 341 (581)
.+++|++|++++| .++.++... . ++|+.|++++|.++.+|. +..+++|++|++++
T Consensus 251 --------------------~l~~L~~L~Ls~N-~l~~ip~~~-~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 251 --------------------WPSQLNSLNLSFT-GLKQVPKGL-P--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp --------------------CCTTCCEEECTTS-CCSSCCSSC-C--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTT
T ss_pred --------------------hcCCCCEEECCCC-ccChhhhhc-c--CCceEEECCCCCCCCChh-HhhCCCCCEEeccC
Confidence 2346666666666 455665532 2 788888888888887765 77788888888888
Q ss_pred CCCc
Q psy8551 342 NPIE 345 (581)
Q Consensus 342 ~~~~ 345 (581)
|++.
T Consensus 306 N~l~ 309 (312)
T 1wwl_A 306 NPFL 309 (312)
T ss_dssp CTTT
T ss_pred CCCC
Confidence 8775
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.5e-22 Score=208.21 Aligned_cols=226 Identities=20% Similarity=0.282 Sum_probs=156.2
Q ss_pred CCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcE
Q psy8551 234 LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYH 313 (581)
Q Consensus 234 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 313 (581)
+++|++|++++|.+...++..+..+++|+.|+ +++| .+...++ +..+++|+.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-------------------------Ls~N-~l~~~~~--l~~l~~L~~ 84 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLN-------------------------LSSN-VLYETLD--LESLSTLRT 84 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEE-------------------------CTTS-CCEEEEE--CTTCTTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEE-------------------------eeCC-CCCCCcc--cccCCCCCE
Confidence 34677777777766665555555555555554 4444 2333332 556666666
Q ss_pred EecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCc
Q psy8551 314 LNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGL 393 (581)
Q Consensus 314 L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 393 (581)
|++++|.++.++.. ++|++|++++|.+..
T Consensus 85 L~Ls~N~l~~l~~~----~~L~~L~L~~N~l~~----------------------------------------------- 113 (487)
T 3oja_A 85 LDLNNNYVQELLVG----PSIETLHAANNNISR----------------------------------------------- 113 (487)
T ss_dssp EECCSSEEEEEEEC----TTCCEEECCSSCCCC-----------------------------------------------
T ss_pred EEecCCcCCCCCCC----CCcCEEECcCCcCCC-----------------------------------------------
Confidence 66666666655432 667777777765531
Q ss_pred cccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeecccccc-CCccccEEeecCCCCeeEecCC
Q psy8551 394 TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK-GLSYLKRLEITGASNLTRVRKG 472 (581)
Q Consensus 394 ~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~ 472 (581)
+. ...+++|+.|++++|.+++.++..+..+++|++|++++|.+++..+..+. .+++|++|++++| .++.+..
T Consensus 114 --~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~- 186 (487)
T 3oja_A 114 --VS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG- 186 (487)
T ss_dssp --EE---ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC-
T ss_pred --CC---ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccc-
Confidence 00 11246678888888888777766777788888888888888877666664 6788888888874 4555533
Q ss_pred ccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCcccccCchhHHH
Q psy8551 473 AFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLR 548 (581)
Q Consensus 473 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c~c~~~~~~ 548 (581)
...+++|++|++++| .+..+++. +..+++|+.|++++|.++.+|..+..+++|+.|++++|++.|++...|+.
T Consensus 187 -~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp -CCCCTTCCEEECCSS-CCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred -cccCCCCCEEECCCC-CCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 335788888999888 67777654 77888999999999999988888888889999999999998877655544
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1e-22 Score=209.52 Aligned_cols=149 Identities=21% Similarity=0.189 Sum_probs=71.6
Q ss_pred cccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCC
Q psy8551 69 SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148 (581)
Q Consensus 69 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 148 (581)
+|++|+|++|.++.+++..|..+++|++|++++|.+ ++..+ ++.+++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-----------------------~~~~~--l~~l~~L~~L~Ls~ 89 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-----------------------YETLD--LESLSTLRTLDLNN 89 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC-----------------------EEEEE--CTTCTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC-----------------------CCCcc--cccCCCCCEEEecC
Confidence 555555555555555444455555555555555432 11111 44445555555555
Q ss_pred CcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCc
Q psy8551 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT 228 (581)
Q Consensus 149 ~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 228 (581)
|.++.++. .++|++|++++|.+++++.. .+++|+.|++++|.++...+..+..+++|+.|++++|.++++++
T Consensus 90 N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 90 NYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp SEEEEEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred CcCCCCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 55444332 24455555555555444332 23445555555555554444444445555555555555554333
Q ss_pred cccC-CCCCCCEEECCCCccccc
Q psy8551 229 KQLS-KLTRLEELEIGQNGFSML 250 (581)
Q Consensus 229 ~~~~-~l~~L~~L~l~~~~~~~~ 250 (581)
..+. .+++|++|++++|.++..
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE
T ss_pred HHHhhhCCcccEEecCCCccccc
Confidence 3332 445555555555554433
No 81
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=4.3e-25 Score=235.05 Aligned_cols=417 Identities=14% Similarity=0.153 Sum_probs=235.9
Q ss_pred EEEcccCCcccccccccCCCcccEEEcCCCc-eeecCC--------------CCCCCCCcccEEeCCCCCCCCccccccc
Q psy8551 49 RLVLSTNRIKTVDSAIPIYLSLQHVDLSHTT-WLIIPI--------------GGFEPQEKLVELQLNHNKHFPQQIVCSI 113 (581)
Q Consensus 49 ~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~-l~~~~~--------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 113 (581)
.+++.+.........+..+++|++|+++++. +..+.. .....+++|++|++++|.+
T Consensus 47 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~--------- 117 (594)
T 2p1m_B 47 KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV--------- 117 (594)
T ss_dssp EEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBC---------
T ss_pred EEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEE---------
Confidence 4444443332222345566777777777653 221110 0123456777777777642
Q ss_pred CCcccccccCcccccccchhhcC-CCCCCcEEeCCCC-cCcccC-CcccccCccCcEEECCCCcceeccCC----cCCCC
Q psy8551 114 ISPRRVEIFGQNRISRIDQACFE-GLTALRILYLDDN-QLRSVP-TPSFIYLGMLAELRVGLNVFTTLADG----AFNGL 186 (581)
Q Consensus 114 ~~~~~L~~l~~~~l~~~~~~~l~-~~~~L~~L~l~~~-~i~~~~-~~~~~~~~~L~~L~L~~n~~~~~~~~----~l~~l 186 (581)
++.....+. .+++|++|++++| .++... ...+..+++|++|++++|.+++.... ....+
T Consensus 118 --------------~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 118 --------------TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp --------------CHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred --------------cHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 222222232 4677777777776 444311 11234577777777777776543322 22356
Q ss_pred CCCcEEEcCCCCccccCccc----cCCCCCCcEEECCCC-cCCccCccccCCCCCCCEEECCCCc-------ccccCCcc
Q psy8551 187 GRLSALDLRGAGLTNISDNA----FRGLSGLRSLVLTDN-RLQSIPTKQLSKLTRLEELEIGQNG-------FSMLEAGC 254 (581)
Q Consensus 187 ~~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~ 254 (581)
++|+.|+++++. ..+.... +..+++|++|++.+| .+..++ ..+..+++|++|+++.+. +..+.. .
T Consensus 184 ~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~ 260 (594)
T 2p1m_B 184 TSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-A 260 (594)
T ss_dssp CCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-H
T ss_pred CcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccccCccchhhHHHHHH-H
Confidence 778888887775 2222221 234578888888877 333433 456667788888765442 222222 3
Q ss_pred cCCCccccee-eecCCCCceeecCccCCCCCCCCEEeCCCCCCccccc-cccccCCCCCcEEecCCCCCc--cccccccC
Q psy8551 255 FKGLSYLKRL-EITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE-EGALVGLPNLYHLNLKENAFT--SFSESMLA 330 (581)
Q Consensus 255 ~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~ 330 (581)
+.++++|+.+ .+.+.. ... ....+..+++|++|++++|. ++... ...+..+++|++|++.+| +. .++.....
T Consensus 261 l~~~~~L~~Ls~~~~~~-~~~-l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~ 336 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAV-PAY-LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST 336 (594)
T ss_dssp HHTCTTCCEEECCBTCC-GGG-GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred HhcCCCcccccCCcccc-hhh-HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh
Confidence 5566777776 332211 011 11112245788888888885 44322 223567888888888887 43 22223334
Q ss_pred CCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCcc-ccCCCCCCCE
Q psy8551 331 WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDN-AFRGLSGLRS 409 (581)
Q Consensus 331 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~-~~~~~~~L~~ 409 (581)
+++|++|++.++...+.. ....+...... ...++++|++
T Consensus 337 ~~~L~~L~L~~~~~~g~~----------------------------------------~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVME----------------------------------------PNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp CTTCCEEEEECSCTTCSS----------------------------------------CSSCCCHHHHHHHHHHCTTCCE
T ss_pred CCCCCEEEEecCcccccc----------------------------------------cCCCCCHHHHHHHHHhchhHHH
Confidence 788888888553210000 00000000001 1123688888
Q ss_pred EEcCCCcCCccChhhhc-CCCCCcEeecC--C----Ccceeec-----cccccCCccccEEeecCCCCeeEecCCccCC-
Q psy8551 410 LVLTDNRLQSIPTKQLS-KLTRLEELEIG--Q----NGFSMLE-----AGCFKGLSYLKRLEITGASNLTRVRKGAFAD- 476 (581)
Q Consensus 410 L~l~~n~l~~~~~~~l~-~l~~L~~L~l~--~----~~i~~~~-----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~- 476 (581)
|.+..+.++......+. .+++|++|+++ + +.++..+ ...+..+++|++|++++ .+++.....+..
T Consensus 377 L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~ 454 (594)
T 2p1m_B 377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTY 454 (594)
T ss_dssp EEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHH
T ss_pred HHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHh
Confidence 88888888765544454 58889999988 3 4555321 12246778899999965 444443333443
Q ss_pred CCCCCeeeCCCCCCceeecCCcc-CCCCCccEEEcCCCccee--eccccccCCcceEEecCCCcc
Q psy8551 477 NLNLETLTLNKNPKLKIIEEDAL-VGLPNLYHLNLKENAFTS--FSESMLAWPELRTIDIAENPI 538 (581)
Q Consensus 477 ~~~L~~L~l~~~~~l~~~~~~~~-~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~l~~np~ 538 (581)
+++|++|++++|. ++......+ .++++|++|++++|.++. +...+..+++|++|++++|++
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 7889999999984 433322223 568999999999999863 233445688999999999988
No 82
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.88 E-value=5e-22 Score=177.61 Aligned_cols=168 Identities=21% Similarity=0.422 Sum_probs=142.6
Q ss_pred CEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCC
Q psy8551 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK 487 (581)
Q Consensus 408 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~ 487 (581)
+.++++++.++.++.. + .++|++|++++|.++.++ ..+..+++|++|++++ +.++.+.+..|.++++|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCC
Confidence 5677888888777632 2 357888888888887654 5678888888888887 567777778888999999999999
Q ss_pred CCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCchhHHHHHHhhc--CCCceeeCCC
Q psy8551 488 NPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSP 564 (581)
Q Consensus 488 ~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~--~~~~~~c~~~ 564 (581)
| .+..+++..|.++++|++|++++|.++.++.. +..+++|+.|++++|||.|+|+++||.+|.... ....+.|+.|
T Consensus 88 N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P 166 (193)
T 2wfh_A 88 N-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGP 166 (193)
T ss_dssp S-CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEES
T ss_pred C-ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCc
Confidence 9 88888888899999999999999999998864 667999999999999999999999999999874 4455789999
Q ss_pred cccccccccccCccccC
Q psy8551 565 APLKYKSLISLSAEDLG 581 (581)
Q Consensus 565 ~~~~~~~~~~~~~~~~~ 581 (581)
..++|+.+.++++++++
T Consensus 167 ~~l~g~~l~~~~~~~~~ 183 (193)
T 2wfh_A 167 GEMADKLLLTTPSKKFT 183 (193)
T ss_dssp GGGTTCBTTTSCGGGCC
T ss_pred hHHCCCCcccCChHHee
Confidence 99999999999998763
No 83
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=4.7e-22 Score=193.95 Aligned_cols=224 Identities=21% Similarity=0.250 Sum_probs=152.6
Q ss_pred CCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEe
Q psy8551 66 IYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILY 145 (581)
Q Consensus 66 ~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~ 145 (581)
..+++++|++++|.++.++. .+..+++|++|++++|.+ +.+ +..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l-----------------------~~l-p~~~~~l~~L~~L~ 133 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGL-----------------------MEL-PDTMQQFAGLETLT 133 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCC-----------------------CCC-CSCGGGGTTCSEEE
T ss_pred cccceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCc-----------------------cch-hHHHhccCCCCEEE
Confidence 45789999999999998885 467799999999999864 222 34477889999999
Q ss_pred CCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCC---------CCCCCcEEEcCCCCccccCccccCCCCCCcEE
Q psy8551 146 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN---------GLGRLSALDLRGAGLTNISDNAFRGLSGLRSL 216 (581)
Q Consensus 146 l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~---------~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 216 (581)
+++|.++.++. .+..+++|++|++++|.+.+..+..+. ++++|+.|++++|.++.++ ..+..+++|++|
T Consensus 134 Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L 211 (328)
T 4fcg_A 134 LARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSL 211 (328)
T ss_dssp EESCCCCCCCG-GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEE
T ss_pred CCCCccccCcH-HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEE
Confidence 99999997765 788899999999999776655444443 3777888888887777544 357777788888
Q ss_pred ECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCC
Q psy8551 217 VLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPK 296 (581)
Q Consensus 217 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 296 (581)
++++|++++++. .+..+++|++|++++|.+....+..+..+++|+.|++++|.....++. .+..+++|++|++++|..
T Consensus 212 ~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 212 KIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp EEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTT
T ss_pred EccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCCCCCc
Confidence 888887777764 477777788888877776665555566666666666655443333322 234444555555555444
Q ss_pred ccccccccccCCCCCcEEecCCC
Q psy8551 297 LKTIEEGALVGLPNLYHLNLKEN 319 (581)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~~ 319 (581)
.+.+|. .+..+++++.+++..+
T Consensus 290 ~~~iP~-~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 290 LSRLPS-LIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCCG-GGGGSCTTCEEECCGG
T ss_pred hhhccH-HHhhccCceEEeCCHH
Confidence 444433 3444444444444433
No 84
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=4.5e-22 Score=180.97 Aligned_cols=188 Identities=24% Similarity=0.327 Sum_probs=151.3
Q ss_pred CCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCC
Q psy8551 13 CMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQ 91 (581)
Q Consensus 13 ~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l 91 (581)
||..|.|.. .++.| .+.+++.+|..+++++++|+|++|+++.++. .+..+++|++|++++|+++.++...|..+
T Consensus 1 Cp~~C~C~~---~~v~c--~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 75 (208)
T 2o6s_A 1 CPSRCSCSG---TTVEC--YSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL 75 (208)
T ss_dssp CCTTCEEET---TEEEC--CSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CcCCCEECC---CEEEe--cCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCC
Confidence 899999976 67999 9999999999999999999999999998876 57899999999999999999988888899
Q ss_pred CcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECC
Q psy8551 92 EKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG 171 (581)
Q Consensus 92 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~ 171 (581)
++|++|++++|. ++.+++..|.++++|++|++++|.++.++...+..+++|++|+++
T Consensus 76 ~~L~~L~Ls~n~-----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 76 TSLTYLNLSTNQ-----------------------LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp TTCCEEECCSSC-----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcCEEECCCCc-----------------------CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence 999999999875 344555557788888888888888888877667788888888888
Q ss_pred CCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCC
Q psy8551 172 LNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT 235 (581)
Q Consensus 172 ~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 235 (581)
+|.++++++..+..+++|+.|++++|.+. ..++.|+.|++..|++++..+..++.++
T Consensus 133 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 133 QNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 88888777766777788888888777543 3455677777777766654444454443
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=4.9e-21 Score=181.81 Aligned_cols=195 Identities=29% Similarity=0.450 Sum_probs=161.2
Q ss_pred ccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCcc
Q psy8551 305 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAE 384 (581)
Q Consensus 305 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (581)
...+++|+.|++.++.++.++ .+..+++|++|++++|.+..
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-------------------------------------- 77 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-------------------------------------- 77 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC--------------------------------------
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC--------------------------------------
Confidence 445677788888887777654 35667888888888876531
Q ss_pred ccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCC
Q psy8551 385 DLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 464 (581)
Q Consensus 385 ~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~ 464 (581)
+ ..+..+++|++|++++|.+++.++..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 78 -----------~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n- 143 (272)
T 3rfs_A 78 -----------I--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN- 143 (272)
T ss_dssp -----------C--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred -----------c--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-
Confidence 1 13556788999999999888888777888999999999999999888888888999999999884
Q ss_pred CeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCc
Q psy8551 465 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCN 543 (581)
Q Consensus 465 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~ 543 (581)
.++.+.+..+..+++|++|++++| .+..+++..+..+++|++|++++|.++.++.. +..+++|++|++++||+.|+|+
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 144 QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 677787777889999999999999 78888888889999999999999999987754 6789999999999999999997
Q ss_pred -hhHHHHHHhh
Q psy8551 544 -ILWLREMLVR 553 (581)
Q Consensus 544 -~~~~~~~~~~ 553 (581)
++|+..|...
T Consensus 223 ~l~~l~~~~n~ 233 (272)
T 3rfs_A 223 GIRYLSEWINK 233 (272)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 7777777655
No 86
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.87 E-value=1.8e-21 Score=192.77 Aligned_cols=207 Identities=21% Similarity=0.369 Sum_probs=168.4
Q ss_pred cEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCC
Q psy8551 312 YHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGA 391 (581)
Q Consensus 312 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 391 (581)
+.++.+++.++.+|..+. +.++.|++++|.+.
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~---------------------------------------------- 52 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLS---------------------------------------------- 52 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCC----------------------------------------------
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCC----------------------------------------------
Confidence 567788888887776543 45788888887653
Q ss_pred CccccCccccC-CCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEec
Q psy8551 392 GLTNISDNAFR-GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVR 470 (581)
Q Consensus 392 ~~~~i~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 470 (581)
.+....|. ++++|+.|++++|.++.+++..|..+++|++|++++|.++.+.+..|..+++|+.|++++ +.+..+.
T Consensus 53 ---~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~ 128 (361)
T 2xot_A 53 ---RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN-NHIVVVD 128 (361)
T ss_dssp ---EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEEC
T ss_pred ---ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCC-CcccEEC
Confidence 23344455 688999999999999998888899999999999999999999888899999999999998 5788888
Q ss_pred CCccCCCCCCCeeeCCCCCCceeecCCcc---CCCCCccEEEcCCCcceeec-cccccCCc--ceEEecCCCcccccCch
Q psy8551 471 KGAFADNLNLETLTLNKNPKLKIIEEDAL---VGLPNLYHLNLKENAFTSFS-ESMLAWPE--LRTIDIAENPIECGCNI 544 (581)
Q Consensus 471 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~---~~l~~L~~L~l~~n~l~~l~-~~~~~~~~--L~~L~l~~np~~c~c~~ 544 (581)
+..|.++++|++|++++| .+..++...+ ..+++|+.|+|++|+|+.++ ..+..++. ++.|++++|||.|+|++
T Consensus 129 ~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 129 RNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred HHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 888999999999999999 8888877766 57999999999999999987 45666776 48999999999999999
Q ss_pred hHH-HHHHhhc------CCCceeeCCCccccccc
Q psy8551 545 LWL-REMLVRR------NTSAVFCNSPAPLKYKS 571 (581)
Q Consensus 545 ~~~-~~~~~~~------~~~~~~c~~~~~~~~~~ 571 (581)
.|+ ..|.... ....+.|..|....+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~ 241 (361)
T 2xot_A 208 YQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIF 241 (361)
T ss_dssp HHHHHHHHHTTCHHHHTTGGGCEEESSSCCEEGG
T ss_pred HHHHHHHHHhcCCchhccCcCCEeCCChHHcCcc
Confidence 986 5677653 24567899997666543
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=2e-25 Score=237.60 Aligned_cols=414 Identities=14% Similarity=0.078 Sum_probs=230.1
Q ss_pred cCccEEEcccCCc-ccc---c------------ccccCCCcccEEEcCCCceeecCCCCCC-CCCcccEEeCCCCCCCCc
Q psy8551 45 PSIQRLVLSTNRI-KTV---D------------SAIPIYLSLQHVDLSHTTWLIIPIGGFE-PQEKLVELQLNHNKHFPQ 107 (581)
Q Consensus 45 ~~l~~L~L~~~~i-~~l---~------------~~~~~~~~L~~L~ls~~~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~ 107 (581)
+++++|+|+++.. .++ | .....+++|++|++++|.++......+. .+++|++|++++|..+..
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 6899999998752 221 1 1234688999999999987754433343 578999999998842111
Q ss_pred ccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCccc----ccCccCcEEECCCCc--ceec-cC
Q psy8551 108 QIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF----IYLGMLAELRVGLNV--FTTL-AD 180 (581)
Q Consensus 108 ~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~----~~~~~L~~L~L~~n~--~~~~-~~ 180 (581)
.. ....+.++++|++|++++|.+++.....+ ..+++|++|+++++. +... ..
T Consensus 146 ~~---------------------l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 146 DG---------------------LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HH---------------------HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HH---------------------HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 11 11223357788888888877665443333 256678888887775 2110 11
Q ss_pred CcCCCCCCCcEEEcCCC-CccccCccccCCCCCCcEEECCCCc-------CCccCccccCCCCCCCEE-ECCCCcccccC
Q psy8551 181 GAFNGLGRLSALDLRGA-GLTNISDNAFRGLSGLRSLVLTDNR-------LQSIPTKQLSKLTRLEEL-EIGQNGFSMLE 251 (581)
Q Consensus 181 ~~l~~l~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L-~l~~~~~~~~~ 251 (581)
..+..+++|+.|++++| .++. .+..+..+++|++|++..+. +.+++ ..+.++++|+.+ .+.......+
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~-~~l~~~~~L~~Ls~~~~~~~~~l- 281 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLS-VALSGCKELRCLSGFWDAVPAYL- 281 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH-HHHHTCTTCCEEECCBTCCGGGG-
T ss_pred HHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHH-HHHhcCCCcccccCCcccchhhH-
Confidence 11234678888888877 3333 33445567778888765442 22333 245667777777 3333222111
Q ss_pred CcccCCCcccceeeecCCCCceeec-CccCCCCCCCCEEeCCCCCCccccc-cccccCCCCCcEEecCC---------CC
Q psy8551 252 AGCFKGLSYLKRLEITGASNLTRVR-KGAFADNLNLETLTLNKNPKLKTIE-EGALVGLPNLYHLNLKE---------NA 320 (581)
Q Consensus 252 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~---------~~ 320 (581)
+..+..+++|+.|++++|. +.... ...+..+++|++|++++| ++... ......+++|++|++.+ +.
T Consensus 282 ~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp GGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred HHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence 1222345677777777765 33221 222446677888888776 22211 11223467788887732 33
Q ss_pred Ccc--ccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCc
Q psy8551 321 FTS--FSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISD 398 (581)
Q Consensus 321 l~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~ 398 (581)
++. +......+++|++|.+..+.+..... .
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~------------------------------------------------~ 390 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAAL------------------------------------------------I 390 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESCCCHHHH------------------------------------------------H
T ss_pred CCHHHHHHHHHhchhHHHHHHhcCCcCHHHH------------------------------------------------H
Confidence 331 11112236777777766655431100 0
Q ss_pred cccCCCCCCCEEEcC--C----CcCCccCh-----hhhcCCCCCcEeecCCCcceeeccccccC-CccccEEeecCCCCe
Q psy8551 399 NAFRGLSGLRSLVLT--D----NRLQSIPT-----KQLSKLTRLEELEIGQNGFSMLEAGCFKG-LSYLKRLEITGASNL 466 (581)
Q Consensus 399 ~~~~~~~~L~~L~l~--~----n~l~~~~~-----~~l~~l~~L~~L~l~~~~i~~~~~~~~~~-~~~L~~L~l~~~~~l 466 (581)
.....+++|+.|+++ + +.++..+. ..+..+++|++|++++ .+++.....+.. +++|+.|++++|. +
T Consensus 391 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i 468 (594)
T 2p1m_B 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-D 468 (594)
T ss_dssp HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-S
T ss_pred HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-C
Confidence 001125677777776 3 34443221 1245677777777766 455443333433 6777777777654 3
Q ss_pred eEecCCcc-CCCCCCCeeeCCCCCCceeecC-CccCCCCCccEEEcCCCccee-ecccc-ccCCcceEEecCCC
Q psy8551 467 TRVRKGAF-ADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTS-FSESM-LAWPELRTIDIAEN 536 (581)
Q Consensus 467 ~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-l~~~~-~~~~~L~~L~l~~n 536 (581)
++.....+ ..+++|++|++++|+. +.... .....+++|++|++++|+++. ....+ ..+|.++...+.++
T Consensus 469 ~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 469 SDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp SHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred cHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 33322222 4577888888888844 33222 234457788888888887752 11122 34666665555544
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=5e-23 Score=199.78 Aligned_cols=228 Identities=20% Similarity=0.177 Sum_probs=169.9
Q ss_pred CCCCCcCccEEEcccCCccc--cccccc-------CCCcccEEEcCCCceeecCCCCC--CCCCcccEEeCCCCCCCCcc
Q psy8551 40 PSHSNPSIQRLVLSTNRIKT--VDSAIP-------IYLSLQHVDLSHTTWLIIPIGGF--EPQEKLVELQLNHNKHFPQQ 108 (581)
Q Consensus 40 p~~~~~~l~~L~L~~~~i~~--l~~~~~-------~~~~L~~L~ls~~~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~ 108 (581)
|..++..+++|+|++|.++. ++..+. ++++|++|++++|.++...+..+ ..+++|++|++++|.+
T Consensus 58 p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l---- 133 (312)
T 1wwl_A 58 LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW---- 133 (312)
T ss_dssp CHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC----
T ss_pred HHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC----
Confidence 77777789999999999964 555554 79999999999999985443444 8999999999999874
Q ss_pred cccccCCcccccccCcccccccchhhcCCC-----CCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceec---c-
Q psy8551 109 IVCSIISPRRVEIFGQNRISRIDQACFEGL-----TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL---A- 179 (581)
Q Consensus 109 ~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~-----~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~---~- 179 (581)
+++ +..++.+ ++|++|++++|.+..++...+..+++|++|++++|.+.+. +
T Consensus 134 -------------------~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 134 -------------------ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp -------------------SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred -------------------cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 222 2223333 8999999999999999887899999999999999987643 2
Q ss_pred CCcCCCCCCCcEEEcCCCCcccc---CccccCCCCCCcEEECCCCcCCccC-ccccCCCCCCCEEECCCCcccccCCccc
Q psy8551 180 DGAFNGLGRLSALDLRGAGLTNI---SDNAFRGLSGLRSLVLTDNRLQSIP-TKQLSKLTRLEELEIGQNGFSMLEAGCF 255 (581)
Q Consensus 180 ~~~l~~l~~L~~L~L~~~~l~~~---~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 255 (581)
...+..+++|+.|++++|.++.+ ....+..+++|++|++++|++++.+ ...+..+++|++|++++|.++.++...+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~ 273 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc
Confidence 12247889999999999998843 3344567899999999999999865 3456678999999999998885544321
Q ss_pred CCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCc
Q psy8551 256 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT 322 (581)
Q Consensus 256 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 322 (581)
++| ++|++++| .++.++. +..+++|+.|++++|.++
T Consensus 274 ---~~L-------------------------~~L~Ls~N-~l~~~p~--~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 ---AKL-------------------------SVLDLSYN-RLDRNPS--PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp ---SEE-------------------------EEEECCSS-CCCSCCC--TTTSCEEEEEECTTCTTT
T ss_pred ---CCc-------------------------eEEECCCC-CCCCChh--HhhCCCCCEEeccCCCCC
Confidence 344 44555555 3444432 556666777777766655
No 89
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=2.6e-21 Score=177.09 Aligned_cols=162 Identities=27% Similarity=0.389 Sum_probs=135.9
Q ss_pred hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCC
Q psy8551 11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFE 89 (581)
Q Consensus 11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~ 89 (581)
++||..|.|.. ..+.| .+.+++.+|..+++++++|+|++|.++.++. .|..+++|++|+|++|.++.+.+..|.
T Consensus 3 ~~CP~~C~C~~---~~v~c--~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~ 77 (220)
T 2v9t_B 3 LHCPAACTCSN---NIVDC--RGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77 (220)
T ss_dssp CCSCTTSEEET---TEEEC--TTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CCCCCCCEECC---CEEEc--CCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh
Confidence 58999999986 67999 9999999999999999999999999998876 788999999999999999998888899
Q ss_pred CCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEE
Q psy8551 90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 169 (581)
Q Consensus 90 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 169 (581)
++++|++|++++|. ++.+++..|.++++|+.|++++|.++.++...|..+++|++|+
T Consensus 78 ~l~~L~~L~Ls~N~-----------------------l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 78 GLRSLNSLVLYGNK-----------------------ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp TCSSCCEEECCSSC-----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCCEEECCCCc-----------------------CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 99999999999875 4455566677788888888888888887777777788888888
Q ss_pred CCCCcceeccCCcCCCCCCCcEEEcCCCCcc
Q psy8551 170 VGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200 (581)
Q Consensus 170 L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~ 200 (581)
|++|.++.+++..+..+++|+.|++++|.+.
T Consensus 135 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8888877777666777777777777777654
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.2e-21 Score=180.53 Aligned_cols=207 Identities=18% Similarity=0.281 Sum_probs=148.2
Q ss_pred CcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhc
Q psy8551 56 RIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACF 135 (581)
Q Consensus 56 ~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l 135 (581)
.++.+|. + .++|++|++++|+++.++...|..+++|++|++++|.. ++.+++.+|
T Consensus 22 ~l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~----------------------l~~i~~~~f 76 (239)
T 2xwt_C 22 DIQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT----------------------LQQLESHSF 76 (239)
T ss_dssp SCSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS----------------------CCEECTTTE
T ss_pred CccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC----------------------cceeCHhHc
Confidence 3777877 3 34899999999999999988889999999999998741 445566668
Q ss_pred CCCCCCcEEeCCC-CcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCc---EEEcCCC-CccccCccccCCC
Q psy8551 136 EGLTALRILYLDD-NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS---ALDLRGA-GLTNISDNAFRGL 210 (581)
Q Consensus 136 ~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~---~L~L~~~-~l~~~~~~~l~~~ 210 (581)
.++++|++|++++ |.++.++...|..+++|++|++++|.+++++. +..+++|+ .|++++| .++.+++..|..+
T Consensus 77 ~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l 154 (239)
T 2xwt_C 77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154 (239)
T ss_dssp ESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccch
Confidence 8888999999988 88888887778888888888888888877654 66777776 7888877 7777776667777
Q ss_pred CCCc-EEECCCCcCCccCccccCCCCCCCEEECCCCc-ccccCCcccCCC-cccceeeecCCCCceeecCccCCCCCCCC
Q psy8551 211 SGLR-SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG-FSMLEAGCFKGL-SYLKRLEITGASNLTRVRKGAFADNLNLE 287 (581)
Q Consensus 211 ~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 287 (581)
++|+ +|++++|+++.++...+.. ++|++|++++|. ++.+++..|..+ ++|+.|+++++ .++.++.. .+++|+
T Consensus 155 ~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~---~~~~L~ 229 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK---GLEHLK 229 (239)
T ss_dssp BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT---TCTTCS
T ss_pred hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh---HhccCc
Confidence 7777 7777777777776555554 677777777773 666666556655 55666665553 23333322 233444
Q ss_pred EEeCCCC
Q psy8551 288 TLTLNKN 294 (581)
Q Consensus 288 ~L~l~~~ 294 (581)
.|++.++
T Consensus 230 ~L~l~~~ 236 (239)
T 2xwt_C 230 ELIARNT 236 (239)
T ss_dssp EEECTTC
T ss_pred eeeccCc
Confidence 4444443
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=6.2e-21 Score=181.10 Aligned_cols=221 Identities=25% Similarity=0.311 Sum_probs=115.9
Q ss_pred CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcc
Q psy8551 46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQN 125 (581)
Q Consensus 46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~ 125 (581)
.+..+++.++.+.++. ....+++|+.|+++++.++.++ .+..+++|++|++++|.+
T Consensus 20 ~l~~l~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l--------------------- 75 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKL--------------------- 75 (272)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCC---------------------
T ss_pred HHHHHHhcCccccccc-ccccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCC---------------------
Confidence 3344444444444332 2334555666666665555443 355555666666665542
Q ss_pred cccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCcc
Q psy8551 126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN 205 (581)
Q Consensus 126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 205 (581)
+.+ ..+..+++|++|++++|.++.++...+..+++|++|++++|.++++++..+..+++|++|++++|.++.+.+.
T Consensus 76 --~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 151 (272)
T 3rfs_A 76 --HDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151 (272)
T ss_dssp --CCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred --CCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence 111 1244555555555555555555554455555555555555555555554455555555555555555555554
Q ss_pred ccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCC
Q psy8551 206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN 285 (581)
Q Consensus 206 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 285 (581)
.+..+++|++|++++|+++++++..+..+++|++|++++|.+...++..+..+++|+.|++.+|.. ...+++
T Consensus 152 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~ 223 (272)
T 3rfs_A 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPG 223 (272)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB--------CCCTTT
T ss_pred HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc--------cccCcH
Confidence 455555566666665555555544455555566666665555555555555555566665555421 122344
Q ss_pred CCEEeCCCCCCcccccc
Q psy8551 286 LETLTLNKNPKLKTIEE 302 (581)
Q Consensus 286 L~~L~l~~~~~~~~~~~ 302 (581)
++.+++..|...+.++.
T Consensus 224 l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 224 IRYLSEWINKHSGVVRN 240 (272)
T ss_dssp THHHHHHHHHTGGGBBC
T ss_pred HHHHHHHHHhCCCcccC
Confidence 55555555433344443
No 92
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.85 E-value=8.4e-21 Score=169.75 Aligned_cols=168 Identities=26% Similarity=0.494 Sum_probs=146.1
Q ss_pred CEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccc-cccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCC
Q psy8551 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG-CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN 486 (581)
Q Consensus 408 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~ 486 (581)
+.++++++.++.++. .+ .++|++|++++|.++...+. .+..+++|++|++++ +.++.+.+..|.++++|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCcc-CC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHcCCcccCCEEECC
Confidence 688899998888774 23 23889999999999888764 578899999999988 57888888889999999999999
Q ss_pred CCCCceeecCCccCCCCCccEEEcCCCcceee-ccccccCCcceEEecCCCcccccCchhHHHHHHhhc--CCCceeeCC
Q psy8551 487 KNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNS 563 (581)
Q Consensus 487 ~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~--~~~~~~c~~ 563 (581)
+| .+..+++..+.++++|++|++++|+++.+ |..+..+++|++|++++|||.|+|++.|+..|.+.. ......|..
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 87 EN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA 165 (192)
T ss_dssp SC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred CC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCC
Confidence 99 88888888899999999999999999976 667888999999999999999999999999999774 333457999
Q ss_pred CcccccccccccCcccc
Q psy8551 564 PAPLKYKSLISLSAEDL 580 (581)
Q Consensus 564 ~~~~~~~~~~~~~~~~~ 580 (581)
|..++|+++.+++.+++
T Consensus 166 P~~l~~~~l~~l~~~~~ 182 (192)
T 1w8a_A 166 PSKVRDVQIKDLPHSEF 182 (192)
T ss_dssp STTTTTSBGGGSCTTTC
T ss_pred ChHHcCCChhhCcHhhc
Confidence 99999999999998876
No 93
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=1.4e-21 Score=193.51 Aligned_cols=192 Identities=24% Similarity=0.299 Sum_probs=133.0
Q ss_pred hhhhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-ccc-CCCcccEEEcCCCceeecCC
Q psy8551 8 ELRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIP-IYLSLQHVDLSHTTWLIIPI 85 (581)
Q Consensus 8 ~~~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~-~~~~L~~L~ls~~~l~~~~~ 85 (581)
....+||..|.|.. ..+.| .+..++.+|..+++.+++|+|++|+++.++. .+. .+++|++|+|++|+|+.++.
T Consensus 7 ~~~~~Cp~~C~C~~---~~l~c--~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~ 81 (361)
T 2xot_A 7 RSVVSCPANCLCAS---NILSC--SKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS 81 (361)
T ss_dssp CCCTTCCTTCEEET---TEEEC--CSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT
T ss_pred CcCCCCCCCCEECC---CEEEe--CCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh
Confidence 34578999999976 57899 9999999999999999999999999998876 455 88999999999999988887
Q ss_pred CCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccC
Q psy8551 86 GGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 165 (581)
Q Consensus 86 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L 165 (581)
..|..+++|++|++++|. ++.+.+..|.++++|+.|++++|.+..++...|..+++|
T Consensus 82 ~~~~~l~~L~~L~Ls~N~-----------------------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 138 (361)
T 2xot_A 82 EAFVPVPNLRYLDLSSNH-----------------------LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138 (361)
T ss_dssp TTTTTCTTCCEEECCSSC-----------------------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hhccCCCCCCEEECCCCc-----------------------CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence 778888888888888775 344445556666667777666666666655555555666
Q ss_pred cEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCC--CCEEECC
Q psy8551 166 AELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTR--LEELEIG 243 (581)
Q Consensus 166 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~ 243 (581)
++|+|++|.++.++...+.. +..+++|+.|++++|+++.++...+..++. ++.|++.
T Consensus 139 ~~L~L~~N~l~~l~~~~~~~---------------------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 139 QKLYLSQNQISRFPVELIKD---------------------GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CEEECCSSCCCSCCGGGTC-------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred CEEECCCCcCCeeCHHHhcC---------------------cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence 66666665555544433310 033555555666666555555444554544 3566666
Q ss_pred CCccc
Q psy8551 244 QNGFS 248 (581)
Q Consensus 244 ~~~~~ 248 (581)
+|.+.
T Consensus 198 ~N~~~ 202 (361)
T 2xot_A 198 NNPLE 202 (361)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 66554
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=1.6e-20 Score=172.98 Aligned_cols=185 Identities=22% Similarity=0.407 Sum_probs=158.2
Q ss_pred cccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCC
Q psy8551 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN 465 (581)
Q Consensus 386 ~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~ 465 (581)
+.+....+..++... .++|+.|++++|.++++.+..+..+++|++|++++|.+..+++..|..+++|+.|++++ +.
T Consensus 24 v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N~ 99 (229)
T 3e6j_A 24 VDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-NQ 99 (229)
T ss_dssp EECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred eEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC-Cc
Confidence 445555566666543 38899999999999999888999999999999999999999888899999999999998 57
Q ss_pred eeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-ccccCCcceEEecCCCcccccCc-
Q psy8551 466 LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCN- 543 (581)
Q Consensus 466 l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~np~~c~c~- 543 (581)
++.+....|..+++|++|++++| .+..++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++||+.|+|.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCN-KLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred CCccChhHhCcchhhCeEeccCC-cccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 88888888999999999999999 788885 557899999999999999999884 46779999999999999999996
Q ss_pred hhHHHHHHhhc-------------CCCceeeCCCcccccccccccCcccc
Q psy8551 544 ILWLREMLVRR-------------NTSAVFCNSPAPLKYKSLISLSAEDL 580 (581)
Q Consensus 544 ~~~~~~~~~~~-------------~~~~~~c~~~~~~~~~~~~~~~~~~~ 580 (581)
..|+..|...+ ....+.|+.+ |.++.+++++++
T Consensus 178 ~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~----~~~~~~~~~~~~ 223 (229)
T 3e6j_A 178 IMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT----NTPVRAVTEAST 223 (229)
T ss_dssp GHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTT----CCBGGGCCGGGC
T ss_pred hHHHHHHHHhCccccccccCcccCCCCcCccCCC----Cccceecccccc
Confidence 88999999874 2334568776 678888887764
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=173.10 Aligned_cols=162 Identities=27% Similarity=0.398 Sum_probs=135.5
Q ss_pred hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc--cccCCCcccEEEcCCCceeecCCCCC
Q psy8551 11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS--AIPIYLSLQHVDLSHTTWLIIPIGGF 88 (581)
Q Consensus 11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~--~~~~~~~L~~L~ls~~~l~~~~~~~~ 88 (581)
.+||..|.|.. ..+.| ++..++.+|..+++.+++|+|++|.++.++. .|..+++|++|++++|.++.++...|
T Consensus 3 ~~CP~~C~C~~---~~l~~--s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 77 (220)
T 2v70_A 3 LACPEKCRCEG---TTVDC--SNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF 77 (220)
T ss_dssp -CCCTTCEEET---TEEEC--CSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCCCCCEECC---CEeEe--CCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh
Confidence 57999999986 57889 9999999999999999999999999998843 58899999999999999999998889
Q ss_pred CCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEE
Q psy8551 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 168 (581)
Q Consensus 89 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 168 (581)
..+++|++|++++|. ++.+.+..|.++++|++|++++|.++.+++..+..+++|++|
T Consensus 78 ~~l~~L~~L~Ls~N~-----------------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 78 EGASGVNEILLTSNR-----------------------LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp TTCTTCCEEECCSSC-----------------------CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred CCCCCCCEEECCCCc-----------------------cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 999999999999875 455566667888888888888888888877677778888888
Q ss_pred ECCCCcceeccCCcCCCCCCCcEEEcCCCCcc
Q psy8551 169 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200 (581)
Q Consensus 169 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~ 200 (581)
++++|.++++.+..|..+++|+.|++++|.+.
T Consensus 135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 88888887776667777777777777777655
No 96
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.84 E-value=1.3e-18 Score=174.54 Aligned_cols=335 Identities=18% Similarity=0.316 Sum_probs=165.4
Q ss_pred eeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCccc
Q psy8551 80 WLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 159 (581)
Q Consensus 80 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 159 (581)
++.+...+|.++.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ ++.++..+|
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~------------------------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 113 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST------------------------VREIGEFAFENCSKLEIINIPDS-VKMIGRCTF 113 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT------------------------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC------------------------ccCcchhHhhCCCCCcEEEeCCC-ceEccchhh
Confidence 45555566666666666666542 34455555666666666666533 555555555
Q ss_pred ccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCE
Q psy8551 160 IYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEE 239 (581)
Q Consensus 160 ~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 239 (581)
.++.+|+.+.+..+ +..+...+|.++..++..... .+..+...+|..+.+|+.+.+..+ +..+...+|..+++|+.
T Consensus 114 ~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~ 189 (394)
T 4fs7_A 114 SGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKS 189 (394)
T ss_dssp TTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCB
T ss_pred cccccchhhcccCc-eeeecceeeecccccccccCc--cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceE
Confidence 55666655555432 344444445444333222211 122333344555555555555443 33444445555555555
Q ss_pred EECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCC
Q psy8551 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319 (581)
Q Consensus 240 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 319 (581)
+.+..+ +..+....|.++..|+.+.+.. ....+....+ ...+|+.+.+... ...+....+..+..++.+.+..+
T Consensus 190 i~l~~~-~~~I~~~~F~~~~~L~~i~~~~--~~~~i~~~~~-~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 190 IKLPRN-LKIIRDYCFAECILLENMEFPN--SLYYLGDFAL-SKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CCCCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTT-TTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT
T ss_pred EEcCCC-ceEeCchhhccccccceeecCC--CceEeehhhc-ccCCCceEEECCC--ceecccccccccccceeEEcCCC
Confidence 555443 3444444444444444444432 1222222211 1234444444332 33333334444444444444333
Q ss_pred CCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCcc
Q psy8551 320 AFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDN 399 (581)
Q Consensus 320 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 399 (581)
... +...
T Consensus 264 ~~~-------------------------------------------------------------------------i~~~ 270 (394)
T 4fs7_A 264 KLR-------------------------------------------------------------------------IGGS 270 (394)
T ss_dssp TCE-------------------------------------------------------------------------ECSC
T ss_pred cce-------------------------------------------------------------------------eecc
Confidence 211 2233
Q ss_pred ccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCC
Q psy8551 400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN 479 (581)
Q Consensus 400 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 479 (581)
.|..+..++.+...... ++...+..+.+|+.+.+..+ ++.++..+|.+|++|+.+++.+ .++.+...+|.+|.+
T Consensus 271 ~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTS 344 (394)
T ss_dssp TTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTT
T ss_pred ccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCC
Confidence 34444555555444332 22233555556666655433 5555555666666666666642 356666666666666
Q ss_pred CCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEE
Q psy8551 480 LETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI 531 (581)
Q Consensus 480 L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L 531 (581)
|+.+.+..+ ++.++..+|.+|++|+++++..+ ++.+...+..+++|+++
T Consensus 345 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 345 LSNINFPLS--LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred CCEEEECcc--ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 666666544 55666666666666766666542 44444455566666554
No 97
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.83 E-value=1.5e-18 Score=173.99 Aligned_cols=318 Identities=16% Similarity=0.273 Sum_probs=212.5
Q ss_pred cccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCcc
Q psy8551 126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN 205 (581)
Q Consensus 126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 205 (581)
.++.+...+|.+|.+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++.+...+|.+++.|+.+.+..+ +..+...
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 35666677777777777777763 466676667777777777777643 55666666666666666555432 3334444
Q ss_pred ccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCC
Q psy8551 206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN 285 (581)
Q Consensus 206 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 285 (581)
+|..+..+. ..+.. ....+...+| .++.+|+.+.+.. .+..+....|.++.+
T Consensus 135 aF~~~~~~~-~~~~~-~~~~i~~~aF------------------------~~c~~L~~i~l~~--~~~~I~~~~F~~c~~ 186 (394)
T 4fs7_A 135 AFKGCDFKE-ITIPE-GVTVIGDEAF------------------------ATCESLEYVSLPD--SMETLHNGLFSGCGK 186 (394)
T ss_dssp TTTTCCCSE-EECCT-TCCEECTTTT------------------------TTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred eeecccccc-cccCc-cccccchhhh------------------------cccCCCcEEecCC--ccceeccccccCCCC
Confidence 444443222 11111 1223333344 4444455444432 334455555566666
Q ss_pred CCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCce
Q psy8551 286 LETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAV 365 (581)
Q Consensus 286 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (581)
|+.+.+..+ +..++..+|..+..|+.+.+..+.. .+.+.......|+.+.+...
T Consensus 187 L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~----------------------- 240 (394)
T 4fs7_A 187 LKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDS----------------------- 240 (394)
T ss_dssp CCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTT-----------------------
T ss_pred ceEEEcCCC--ceEeCchhhccccccceeecCCCce-EeehhhcccCCCceEEECCC-----------------------
Confidence 666666553 5555566677777777766655432 23334444566777766542
Q ss_pred eecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeec
Q psy8551 366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445 (581)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~ 445 (581)
...+....|.++..++.+.+..+ ...+....+..+..++.+...... .+
T Consensus 241 ---------------------------~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~ 289 (394)
T 4fs7_A 241 ---------------------------FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VP 289 (394)
T ss_dssp ---------------------------CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---EC
T ss_pred ---------------------------ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---ec
Confidence 23455667888999999999875 444555778899999999886653 45
Q ss_pred cccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeec-ccccc
Q psy8551 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ESMLA 524 (581)
Q Consensus 446 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~ 524 (581)
..+|..+.+|+.+.+.+ .++.+...+|.+|.+|+.+++.+ .++.++..+|.+|.+|+.+++..+ ++.+. ..+..
T Consensus 290 ~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp TTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred ccccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 66788999999999974 58899999999999999999975 488898999999999999999876 77775 56778
Q ss_pred CCcceEEecCCC
Q psy8551 525 WPELRTIDIAEN 536 (581)
Q Consensus 525 ~~~L~~L~l~~n 536 (581)
|++|+++++..+
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 999999999654
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=8e-20 Score=180.17 Aligned_cols=240 Identities=22% Similarity=0.253 Sum_probs=159.8
Q ss_pred cEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccc
Q psy8551 48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRI 127 (581)
Q Consensus 48 ~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l 127 (581)
+.++.++++++.+|..+ .+++++|+|++|+|+.++..+|.++++|++|++++|.+ .
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i----------------------~ 67 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV----------------------L 67 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT----------------------C
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC----------------------C
Confidence 56788999999999765 46899999999999999988899999999999999864 2
Q ss_pred cccchhhcCCCCCCcE-EeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCC-CCccccCcc
Q psy8551 128 SRIDQACFEGLTALRI-LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG-AGLTNISDN 205 (581)
Q Consensus 128 ~~~~~~~l~~~~~L~~-L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~-~~l~~~~~~ 205 (581)
+.++..+|.++++++. +.+.+|++..+++..|..+++|++|++++|.+..+++..+....++..+++.+ +.+..+...
T Consensus 68 ~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 68 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT
T ss_pred CccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc
Confidence 3345566777877665 45566788888777788888888888888888777765565666677777754 456666655
Q ss_pred ccCCCC-CCcEEECCCCcCCccCccccCCCCCCCEEECCC-CcccccCCcccCCCcccceeeecCCCCceeecCccCCCC
Q psy8551 206 AFRGLS-GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ-NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADN 283 (581)
Q Consensus 206 ~l~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 283 (581)
.|..+. .++.|++++|+++.++...+. ..+|+++++.+ |.++.++...|..+++|+.|++++| .++.++...+
T Consensus 148 ~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~--- 222 (350)
T 4ay9_X 148 SFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGL--- 222 (350)
T ss_dssp SSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSC---
T ss_pred chhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhh---
Confidence 555543 466777777777766654443 34566666653 5555565555666666666666654 3444444332
Q ss_pred CCCCEEeCCCCCCccccccccccCCCCCcEEecCC
Q psy8551 284 LNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKE 318 (581)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 318 (581)
.+|+.|.+.++..++.+|. +..+++|+.+++.+
T Consensus 223 ~~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLPT--LEKLVALMEASLTY 255 (350)
T ss_dssp TTCCEEECTTCTTCCCCCC--TTTCCSCCEEECSC
T ss_pred ccchHhhhccCCCcCcCCC--chhCcChhhCcCCC
Confidence 3444444444434444442 44555555555543
No 99
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=6.3e-20 Score=177.27 Aligned_cols=188 Identities=23% Similarity=0.331 Sum_probs=145.3
Q ss_pred CcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccC
Q psy8551 44 NPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFG 123 (581)
Q Consensus 44 ~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~ 123 (581)
.+++++|+++++.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l------------------- 97 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL------------------- 97 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC-------------------
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC-------------------
Confidence 468899999999888887 57888899999999998888775 88888899999988863
Q ss_pred cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccC
Q psy8551 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203 (581)
Q Consensus 124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~ 203 (581)
+.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++++++ +..+++|+.|++++|.++.+.
T Consensus 98 ----~~~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 98 ----KNVS--AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp ----SCCG--GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred ----CCch--hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh
Confidence 2221 3677788888888888887765 37778888888888888777654 677788888888888877665
Q ss_pred ccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCC
Q psy8551 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 269 (581)
Q Consensus 204 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 269 (581)
+ +..+++|+.|++++|+++.+++ +..+++|++|++++|.+....+ +..+++|+.|++.+|
T Consensus 168 ~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 168 P--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227 (308)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE
T ss_pred h--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC
Confidence 4 7778888888888888877764 6777888888888887776653 566777777777664
No 100
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=3.6e-19 Score=171.94 Aligned_cols=197 Identities=25% Similarity=0.371 Sum_probs=130.4
Q ss_pred CCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcc
Q psy8551 256 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELR 335 (581)
Q Consensus 256 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~ 335 (581)
..++.|+.|++.++ .+..++ .+..+++|++|++++| .+..++. +..+++|+.|++++|.++.++ .+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~-~i~~l~--~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-GVTTIE--GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTS-CCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred HHcCCcCEEEeeCC-CccCch--hhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 34566777777765 344433 3556677777777777 5666554 667777777777777777654 466677777
Q ss_pred eEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCC
Q psy8551 336 TIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDN 415 (581)
Q Consensus 336 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n 415 (581)
+|++++|.+.. ++ .+..+++|+.|++++|
T Consensus 111 ~L~l~~n~l~~-------------------------------------------------~~--~l~~l~~L~~L~l~~n 139 (308)
T 1h6u_A 111 TLDLTSTQITD-------------------------------------------------VT--PLAGLSNLQVLYLDLN 139 (308)
T ss_dssp EEECTTSCCCC-------------------------------------------------CG--GGTTCTTCCEEECCSS
T ss_pred EEECCCCCCCC-------------------------------------------------ch--hhcCCCCCCEEECCCC
Confidence 77777776531 11 2455677777777777
Q ss_pred cCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeec
Q psy8551 416 RLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE 495 (581)
Q Consensus 416 ~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 495 (581)
.+++.++ +..+++|++|++++|.+++..+ +..+++|++|++++| .++.+.+ +..+++|++|++++| .+..++
T Consensus 140 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N-~l~~~~ 211 (308)
T 1h6u_A 140 QITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNN-QISDVS 211 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECTTS-CCCBCG
T ss_pred ccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC-ccCcChh--hcCCCCCCEEEccCC-ccCccc
Confidence 7776654 6677777777777777776554 667777777777763 4544433 566777777777777 555554
Q ss_pred CCccCCCCCccEEEcCCCcceeecc
Q psy8551 496 EDALVGLPNLYHLNLKENAFTSFSE 520 (581)
Q Consensus 496 ~~~~~~l~~L~~L~l~~n~l~~l~~ 520 (581)
+ +..+++|++|++++|.++..|.
T Consensus 212 ~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 212 P--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp G--GTTCTTCCEEEEEEEEEECCCE
T ss_pred c--ccCCCCCCEEEccCCeeecCCe
Confidence 2 6677777777777777765443
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=3e-20 Score=182.69 Aligned_cols=250 Identities=16% Similarity=0.145 Sum_probs=174.1
Q ss_pred cCccEEEcccCCcccccccccCC--CcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccccc
Q psy8551 45 PSIQRLVLSTNRIKTVDSAIPIY--LSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF 122 (581)
Q Consensus 45 ~~l~~L~L~~~~i~~l~~~~~~~--~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l 122 (581)
..+++++++++.+. +..+..+ ++++.|++++|.++..... +..+++|++|++++|.+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l------------------ 105 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI------------------ 105 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE------------------
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc------------------
Confidence 35788999988877 4456666 8899999999998877755 45689999999998853
Q ss_pred Cccccccc-chhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCC-cceec-cCCcCCCCCCCcEEEcCCC-C
Q psy8551 123 GQNRISRI-DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN-VFTTL-ADGAFNGLGRLSALDLRGA-G 198 (581)
Q Consensus 123 ~~~~l~~~-~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n-~~~~~-~~~~l~~l~~L~~L~L~~~-~ 198 (581)
+.. .+..+..+++|++|++++|.+++.....+..+++|++|++++| .+++. .+..+.++++|+.|++++| .
T Consensus 106 -----~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 106 -----EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp -----CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred -----CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 221 2344677889999999988887655556777888999999888 56542 2334667788888888888 7
Q ss_pred cccc-CccccCCCC-CCcEEECCCC--cCC--ccCccccCCCCCCCEEECCCCc-ccccCCcccCCCcccceeeecCCCC
Q psy8551 199 LTNI-SDNAFRGLS-GLRSLVLTDN--RLQ--SIPTKQLSKLTRLEELEIGQNG-FSMLEAGCFKGLSYLKRLEITGASN 271 (581)
Q Consensus 199 l~~~-~~~~l~~~~-~L~~L~l~~n--~l~--~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~ 271 (581)
++.. .+..+..++ +|++|++++| .++ .++ ..+..+++|++|++++|. ++......+..+++|+.|++++|..
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH-HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 7753 234466778 8888998888 444 233 456678888888888887 5555455567778888888887764
Q ss_pred ceeecCccCCCCCCCCEEeCCCCCCccccccccccCC-CCCcEEecCCCCCccccc
Q psy8551 272 LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGL-PNLYHLNLKENAFTSFSE 326 (581)
Q Consensus 272 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~ 326 (581)
+.......+..+++|+.|++++| + +...+..+ ..+..|++++|.+++..+
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~--i---~~~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI--V---PDGTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS--S---CTTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred CCHHHHHHHhcCCCCCEEeccCc--c---CHHHHHHHHhhCcceEEecccCccccC
Confidence 44333345666778888888876 2 22222222 235556677777775433
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.8e-18 Score=159.34 Aligned_cols=159 Identities=23% Similarity=0.381 Sum_probs=132.1
Q ss_pred CCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccc-cccccCCCcccEEEcCCCceeecCCCCCCCC
Q psy8551 13 CMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQ 91 (581)
Q Consensus 13 ~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l-~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l 91 (581)
....|.|.. .++.| ++.+++.+|..+++++++|+|++|.+..+ +..+..+++|++|+|++|.++.++...|..+
T Consensus 13 ~~~~~~Cs~---~~v~c--~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 87 (229)
T 3e6j_A 13 CPSQCSCSG---TTVDC--RSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87 (229)
T ss_dssp CCTTCEEET---TEEEC--TTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCEEeC---CEeEc--cCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC
Confidence 344555554 46999 99999999999999999999999999987 4578899999999999999999998888999
Q ss_pred CcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECC
Q psy8551 92 EKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG 171 (581)
Q Consensus 92 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~ 171 (581)
++|++|++++|. ++.+++..|..+++|+.|++++|+++.++. .+..+++|++|+++
T Consensus 88 ~~L~~L~Ls~N~-----------------------l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 88 TQLTVLDLGTNQ-----------------------LTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALD 143 (229)
T ss_dssp TTCCEEECCSSC-----------------------CCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECC
T ss_pred CCcCEEECCCCc-----------------------CCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECC
Confidence 999999999886 445556667888999999999998887765 56778888888888
Q ss_pred CCcceeccCCcCCCCCCCcEEEcCCCCcc
Q psy8551 172 LNVFTTLADGAFNGLGRLSALDLRGAGLT 200 (581)
Q Consensus 172 ~n~~~~~~~~~l~~l~~L~~L~L~~~~l~ 200 (581)
+|.++.+++..+..+++|+.|++.+|.+.
T Consensus 144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 88888777766777788888888777665
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.4e-18 Score=157.86 Aligned_cols=179 Identities=27% Similarity=0.333 Sum_probs=134.7
Q ss_pred ccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCccc
Q psy8551 47 IQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNR 126 (581)
Q Consensus 47 l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~ 126 (581)
-+.++.+++.++.+|..+ .++|++|++++|+++.++...|..+++|++|++++|.
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----------------------- 63 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK----------------------- 63 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-----------------------
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-----------------------
Confidence 356778888888888654 4689999999999888887778888889999888875
Q ss_pred ccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccc
Q psy8551 127 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206 (581)
Q Consensus 127 l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~ 206 (581)
++.+++..|..+++|++|++++|.++.++...+..+++|++|++++|.++.+++..+..+++|+.|++++|.++.+.+..
T Consensus 64 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 143 (208)
T 2o6s_A 64 LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHH
Confidence 34455555777888888888888888877766777888888888888888777766777788888888888777777666
Q ss_pred cCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCC
Q psy8551 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 257 (581)
Q Consensus 207 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 257 (581)
+..+++|++|++++|.+. ..+++|++|++..|.+++..+..++.
T Consensus 144 ~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp TTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred hccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcc
Confidence 777777888888777433 34566777777777666555544443
No 104
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=155.73 Aligned_cols=138 Identities=27% Similarity=0.418 Sum_probs=119.4
Q ss_pred hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCC
Q psy8551 11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEP 90 (581)
Q Consensus 11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~ 90 (581)
++||..|.|.. ..+.| ++..++.+|..+++++++|+|++|.++.+|..+.++++|++|++++|.|+.++...|.+
T Consensus 2 ~~CP~~C~C~~---~~l~~--~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 2 SRCPTECTCLD---TVVRC--SNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76 (193)
T ss_dssp --CCTTCEEET---TEEEC--TTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCCCEeCC---CEEEc--CCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccC
Confidence 57999999976 67899 99999999999999999999999999999999999999999999999999999888999
Q ss_pred CCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEEC
Q psy8551 91 QEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 170 (581)
Q Consensus 91 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L 170 (581)
+++|++|++++|. ++.+.+..|.++++|+.|++++|.++.++...|..+++|++|++
T Consensus 77 l~~L~~L~Ls~N~-----------------------l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 77 MTQLLTLILSYNR-----------------------LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp CTTCCEEECCSSC-----------------------CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCCc-----------------------cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 9999999999875 45566667888888888888888888887767777788888888
Q ss_pred CCCcce
Q psy8551 171 GLNVFT 176 (581)
Q Consensus 171 ~~n~~~ 176 (581)
++|.+.
T Consensus 134 ~~N~~~ 139 (193)
T 2wfh_A 134 GANPLY 139 (193)
T ss_dssp CSSCEE
T ss_pred CCCCee
Confidence 877654
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=3.3e-20 Score=185.84 Aligned_cols=267 Identities=18% Similarity=0.146 Sum_probs=170.3
Q ss_pred cccCCcccccccccCCCcccEEEcCCCceeecCC----CCCCCCCcccEEeCCCCCC--CCcccccccCCcccccccCcc
Q psy8551 52 LSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPI----GGFEPQEKLVELQLNHNKH--FPQQIVCSIISPRRVEIFGQN 125 (581)
Q Consensus 52 L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~----~~~~~l~~L~~L~l~~n~~--~~~~~~~~~~~~~~L~~l~~~ 125 (581)
+....+..++..+..+++|++|+|++|.++.... ..+..+++|++|++++|.+ ++...+..
T Consensus 16 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~------------- 82 (386)
T 2ca6_A 16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA------------- 82 (386)
T ss_dssp CCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHH-------------
T ss_pred CCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHH-------------
Confidence 3334445666678888999999999998885422 3477889999999998753 11111100
Q ss_pred cccccchhhcCCCCCCcEEeCCCCcCccc----CCcccccCccCcEEECCCCcceeccCCc----CCCC---------CC
Q psy8551 126 RISRIDQACFEGLTALRILYLDDNQLRSV----PTPSFIYLGMLAELRVGLNVFTTLADGA----FNGL---------GR 188 (581)
Q Consensus 126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~~~----l~~l---------~~ 188 (581)
+..+ ..++..+++|++|++++|.+... ....+..+++|++|++++|.++...... +..+ ++
T Consensus 83 -~~~l-~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 83 -LRLL-LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP 160 (386)
T ss_dssp -HHHH-HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred -HHHH-HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC
Confidence 0111 23357889999999999988862 2235677889999999998876433222 2233 78
Q ss_pred CcEEEcCCCCccccCc----cccCCCCCCcEEECCCCcCCc-----cCccccCCCCCCCEEECCCCcccccCCcccCCCc
Q psy8551 189 LSALDLRGAGLTNISD----NAFRGLSGLRSLVLTDNRLQS-----IPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLS 259 (581)
Q Consensus 189 L~~L~L~~~~l~~~~~----~~l~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 259 (581)
|++|++++|+++.... ..+..+++|++|++++|+++. +.+..+..+++|++|++++|.++.....
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~------ 234 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS------ 234 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH------
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH------
Confidence 8888888887763322 245567788888888887772 2222566777888888888776421100
Q ss_pred ccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccc----cccc--cCCCCCcEEecCCCCCcc-----ccccc
Q psy8551 260 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE----EGAL--VGLPNLYHLNLKENAFTS-----FSESM 328 (581)
Q Consensus 260 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~--~~~~~L~~L~l~~~~l~~-----~~~~~ 328 (581)
.+ +..+..+++|++|++++| .++... ...+ ..+++|+.|++++|.++. ++..+
T Consensus 235 --------------~l-~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 235 --------------AL-AIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp --------------HH-HHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred --------------HH-HHHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 00 112334456666666666 344331 1133 337888888888888886 66666
Q ss_pred -cCCCCcceEEccCCCCccCCc-hhhHHH
Q psy8551 329 -LAWPELRTIDIAENPIECGCN-ILWLRE 355 (581)
Q Consensus 329 -~~~~~L~~L~l~~~~~~~~~~-~~~l~~ 355 (581)
..+++|++|++++|++..... ...+..
T Consensus 299 ~~~l~~L~~L~l~~N~l~~~~~~~~~l~~ 327 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFSEEDDVVDEIRE 327 (386)
T ss_dssp HHHCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred HhcCCCceEEEccCCcCCcchhHHHHHHH
Confidence 457888899998888876654 344433
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=169.18 Aligned_cols=227 Identities=17% Similarity=0.159 Sum_probs=148.9
Q ss_pred CccEEEcccCCccc--ccc--cccCCCcccEEEcCCCceeecCCCCC--CCCCcccEEeCCCCCCCCcccccccCCcccc
Q psy8551 46 SIQRLVLSTNRIKT--VDS--AIPIYLSLQHVDLSHTTWLIIPIGGF--EPQEKLVELQLNHNKHFPQQIVCSIISPRRV 119 (581)
Q Consensus 46 ~l~~L~L~~~~i~~--l~~--~~~~~~~L~~L~ls~~~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 119 (581)
.++.+.+.+..+.. +.. .+..+++|++|++++|.++...+..+ ..+++|++|++++|.+...
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~------------ 132 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG------------ 132 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST------------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch------------
Confidence 56778888777652 111 12245668888888888886665566 7888888888888864110
Q ss_pred cccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCccee---ccC-CcCCCCCCCcEEEcC
Q psy8551 120 EIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT---LAD-GAFNGLGRLSALDLR 195 (581)
Q Consensus 120 ~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~---~~~-~~l~~l~~L~~L~L~ 195 (581)
...+....+..+++|++|++++|.+..++...+..+++|++|++++|.+.+ ++. ..+..+++|++|+++
T Consensus 133 -------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 133 -------RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp -------TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred -------hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 011122335567888888888888888877778888888888888887653 222 234677788888888
Q ss_pred CCCccccCcc---ccCCCCCCcEEECCCCcCCccCccccCCC---CCCCEEECCCCcccccCCcccCCCcccceeeecCC
Q psy8551 196 GAGLTNISDN---AFRGLSGLRSLVLTDNRLQSIPTKQLSKL---TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 269 (581)
Q Consensus 196 ~~~l~~~~~~---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 269 (581)
+|+++.+... .+..+++|++|++++|++++..+..+..+ ++|++|++++|.++.++...+
T Consensus 206 ~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-------------- 271 (310)
T 4glp_A 206 NTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP-------------- 271 (310)
T ss_dssp SSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--------------
T ss_pred CCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--------------
Confidence 8877644331 23566788888888888877633444444 578888888877764433211
Q ss_pred CCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCc
Q psy8551 270 SNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT 322 (581)
Q Consensus 270 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 322 (581)
++|++|++++| .+..++. +..+++|+.|++++|.++
T Consensus 272 --------------~~L~~L~Ls~N-~l~~~~~--~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 272 --------------AKLRVLDLSSN-RLNRAPQ--PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp --------------SCCSCEECCSC-CCCSCCC--TTSCCCCSCEECSSTTTS
T ss_pred --------------CCCCEEECCCC-cCCCCch--hhhCCCccEEECcCCCCC
Confidence 35556666666 4554432 456677777777777665
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=6.1e-20 Score=182.01 Aligned_cols=254 Identities=17% Similarity=0.188 Sum_probs=159.4
Q ss_pred EEEcccCCcccc-cccccCCCcccEEEcCCCceeecCC----CCCCCCC-cccEEeCCCCCCCCcccccccCCccccccc
Q psy8551 49 RLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPI----GGFEPQE-KLVELQLNHNKHFPQQIVCSIISPRRVEIF 122 (581)
Q Consensus 49 ~L~L~~~~i~~l-~~~~~~~~~L~~L~ls~~~l~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l 122 (581)
+++|+.+.+... |..+...++|++|++++|.++..+. ..+..++ +|++|++++|.+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l------------------ 63 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL------------------ 63 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG------------------
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC------------------
Confidence 456777777754 3444455558888888888877665 5667777 788888888763
Q ss_pred CcccccccchhhcCC-----CCCCcEEeCCCCcCcccCCccc----ccC-ccCcEEECCCCcceeccCCc----CCC-CC
Q psy8551 123 GQNRISRIDQACFEG-----LTALRILYLDDNQLRSVPTPSF----IYL-GMLAELRVGLNVFTTLADGA----FNG-LG 187 (581)
Q Consensus 123 ~~~~l~~~~~~~l~~-----~~~L~~L~l~~~~i~~~~~~~~----~~~-~~L~~L~L~~n~~~~~~~~~----l~~-l~ 187 (581)
+...+..+.. .++|++|++++|.++......+ ..+ ++|++|++++|.++...... +.. .+
T Consensus 64 -----~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 138 (362)
T 3goz_A 64 -----GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138 (362)
T ss_dssp -----GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCT
T ss_pred -----CHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCC
Confidence 2222222322 2788888888888876665433 333 67888888888876554422 333 35
Q ss_pred CCcEEEcCCCCccccCcccc----CCCC-CCcEEECCCCcCCccCcc----ccCCC-CCCCEEECCCCcccccCCcccCC
Q psy8551 188 RLSALDLRGAGLTNISDNAF----RGLS-GLRSLVLTDNRLQSIPTK----QLSKL-TRLEELEIGQNGFSMLEAGCFKG 257 (581)
Q Consensus 188 ~L~~L~L~~~~l~~~~~~~l----~~~~-~L~~L~l~~n~l~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~~~~~~~ 257 (581)
+|++|++++|.++......+ ...+ +|++|++++|+++..... .+..+ ++|++|++++|.+.......+.
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~- 217 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA- 217 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH-
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH-
Confidence 78888888887775444332 3344 788888888877765543 23344 4788888888876642211110
Q ss_pred CcccceeeecCCCCceeecCccCCC-CCCCCEEeCCCCCCcccccc----ccccCCCCCcEEecCCCCCc--------cc
Q psy8551 258 LSYLKRLEITGASNLTRVRKGAFAD-NLNLETLTLNKNPKLKTIEE----GALVGLPNLYHLNLKENAFT--------SF 324 (581)
Q Consensus 258 ~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~l~--------~~ 324 (581)
. .+.. .++|++|++++| .++..+. ..+..+++|+.|++++|.+. .+
T Consensus 218 -------------------~-~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 218 -------------------Y-IFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp -------------------H-HHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred -------------------H-HHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 0 1111 235666666666 4444332 23466778888888888733 34
Q ss_pred cccccCCCCcceEEccCCCCccC
Q psy8551 325 SESMLAWPELRTIDIAENPIECG 347 (581)
Q Consensus 325 ~~~~~~~~~L~~L~l~~~~~~~~ 347 (581)
+..+..+++|++|++++|++...
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhccCCceEEEecCCCcCCCc
Confidence 44566778888899998887654
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=4.7e-20 Score=182.80 Aligned_cols=202 Identities=16% Similarity=0.168 Sum_probs=120.9
Q ss_pred cCcccccccchhhcCCCCCCcEEeCCCCcCcccCC----cccccCc-cCcEEECCCCcceeccCCcCCCC-----CCCcE
Q psy8551 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT----PSFIYLG-MLAELRVGLNVFTTLADGAFNGL-----GRLSA 191 (581)
Q Consensus 122 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~----~~~~~~~-~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~ 191 (581)
++.|.+++..+..+...++|++|++++|.++..+. ..+..++ +|++|++++|.++......+..+ ++|+.
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 34455666666656666668888888888887776 5666677 78888888888776544334332 77888
Q ss_pred EEcCCCCccccCcccc----CCC-CCCcEEECCCCcCCccCccc----cCC-CCCCCEEECCCCcccccCCcccCCCccc
Q psy8551 192 LDLRGAGLTNISDNAF----RGL-SGLRSLVLTDNRLQSIPTKQ----LSK-LTRLEELEIGQNGFSMLEAGCFKGLSYL 261 (581)
Q Consensus 192 L~L~~~~l~~~~~~~l----~~~-~~L~~L~l~~n~l~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~L 261 (581)
|++++|.++...+..+ ..+ ++|++|++++|+++..+... +.. .++|++|++++|.++......+.
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~----- 159 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI----- 159 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH-----
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH-----
Confidence 8888887776665433 333 67777777777777655433 233 24777777777766543222110
Q ss_pred ceeeecCCCCceeecCccCCCC-CCCCEEeCCCCCCccccccc----cccCC-CCCcEEecCCCCCcc-----ccccccC
Q psy8551 262 KRLEITGASNLTRVRKGAFADN-LNLETLTLNKNPKLKTIEEG----ALVGL-PNLYHLNLKENAFTS-----FSESMLA 330 (581)
Q Consensus 262 ~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~l~~-----~~~~~~~ 330 (581)
..+... .+|++|++++| .++..... .+..+ ++|+.|++++|.++. ++..+..
T Consensus 160 ----------------~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 160 ----------------QILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp ----------------HHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred ----------------HHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 001111 25566666666 34433322 23334 367777777776664 4444443
Q ss_pred -CCCcceEEccCCCCc
Q psy8551 331 -WPELRTIDIAENPIE 345 (581)
Q Consensus 331 -~~~L~~L~l~~~~~~ 345 (581)
.++|++|++++|.+.
T Consensus 223 ~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLH 238 (362)
T ss_dssp SCTTCCEEECCSSCCC
T ss_pred CCCCceEEECcCCCCC
Confidence 246777777766554
No 109
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=1.1e-18 Score=170.53 Aligned_cols=265 Identities=20% Similarity=0.224 Sum_probs=149.2
Q ss_pred CCCCcEEeCCCCcCc--ccCCcccccCccCcEEECCCCcceeccCCcCCC--------CCCCcEEEcCCCCccccCcccc
Q psy8551 138 LTALRILYLDDNQLR--SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG--------LGRLSALDLRGAGLTNISDNAF 207 (581)
Q Consensus 138 ~~~L~~L~l~~~~i~--~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~--------l~~L~~L~L~~~~l~~~~~~~l 207 (581)
+++|+.||+++|.+. ...... .+.++.+.+..+ .++..+|.+ +++|+.+++++ .++.+...+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCcccc---cccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 677888888887776 332211 222344444444 445555666 77777777777 6777777777
Q ss_pred CCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcc----cccCCcccCCCcccceeeecCCCCceeecCccCCCC
Q psy8551 208 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF----SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADN 283 (581)
Q Consensus 208 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 283 (581)
..|++|+.|++.+|.+..++..+|..+.++..+....... ..+....|.++..|+.
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~-------------------- 180 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET-------------------- 180 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE--------------------
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce--------------------
Confidence 7777777777777777777767776666665555544211 1122222323333330
Q ss_pred CCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccc-cCCCCcceEEccCCCCccCCchhhHHHHHhhcCC
Q psy8551 284 LNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESM-LAWPELRTIDIAENPIECGCNILWLREMLVRRNT 362 (581)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 362 (581)
.+.+.....+.......-....++..+.+.++-...-...+ ..+++|+++++.+|.+
T Consensus 181 ----~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i------------------ 238 (329)
T 3sb4_A 181 ----TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNA------------------ 238 (329)
T ss_dssp ----EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCC------------------
T ss_pred ----eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCc------------------
Confidence 22222111111110000112233444444433111111111 1246666666665543
Q ss_pred CceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCc-EeecCCCcc
Q psy8551 363 SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE-ELEIGQNGF 441 (581)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~~~i 441 (581)
..++..+|.+|++|+++++.+| +..++..+|..+++|+ .+++.+ .+
T Consensus 239 -------------------------------~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l 285 (329)
T 3sb4_A 239 -------------------------------TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV 285 (329)
T ss_dssp -------------------------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred -------------------------------ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence 3455566777777777777775 6667767777777777 777766 67
Q ss_pred eeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeC
Q psy8551 442 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTL 485 (581)
Q Consensus 442 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l 485 (581)
+.+...+|.+|++|+.+++.+ +.++.+...+|.++++|+.++.
T Consensus 286 ~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 286 TAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred eEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 777777777777777777765 5677777777777777777653
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=7.8e-19 Score=170.11 Aligned_cols=197 Identities=18% Similarity=0.144 Sum_probs=149.0
Q ss_pred cCccEEEcccCCccc-ccccc--cCCCcccEEEcCCCceeecCC----CCCCCCCcccEEeCCCCCCCCcccccccCCcc
Q psy8551 45 PSIQRLVLSTNRIKT-VDSAI--PIYLSLQHVDLSHTTWLIIPI----GGFEPQEKLVELQLNHNKHFPQQIVCSIISPR 117 (581)
Q Consensus 45 ~~l~~L~L~~~~i~~-l~~~~--~~~~~L~~L~ls~~~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 117 (581)
+++++|+|++|.+.. .|..+ ..+++|++|++++|.++.... ..+..+++|++|++++|.
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-------------- 156 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-------------- 156 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS--------------
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC--------------
Confidence 469999999999985 45566 899999999999999886322 234578999999999986
Q ss_pred cccccCcccccccchhhcCCCCCCcEEeCCCCcCcc---cCC-cccccCccCcEEECCCCcceeccCC---cCCCCCCCc
Q psy8551 118 RVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRS---VPT-PSFIYLGMLAELRVGLNVFTTLADG---AFNGLGRLS 190 (581)
Q Consensus 118 ~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~---~~~-~~~~~~~~L~~L~L~~n~~~~~~~~---~l~~l~~L~ 190 (581)
++.+.+..++.+++|++|++++|++.. ++. ..+..+++|++|++++|.++.++.. .+..+++|+
T Consensus 157 ---------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~ 227 (310)
T 4glp_A 157 ---------SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPH 227 (310)
T ss_dssp ---------SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCS
T ss_pred ---------cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCC
Confidence 445556668888999999999998754 222 2346788899999999988754431 245778999
Q ss_pred EEEcCCCCccccCccccCCC---CCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeec
Q psy8551 191 ALDLRGAGLTNISDNAFRGL---SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 267 (581)
Q Consensus 191 ~L~L~~~~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 267 (581)
+|++++|.++...+..+..+ ++|++|++++|+++.+|.. + .++|++|++++|.++.++. +..+++|+.|+++
T Consensus 228 ~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~-~--~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~ 302 (310)
T 4glp_A 228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG-L--PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLD 302 (310)
T ss_dssp SEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC-C--CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECS
T ss_pred EEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh-h--cCCCCEEECCCCcCCCCch--hhhCCCccEEECc
Confidence 99999999888755555555 6899999999999988743 3 2789999999998886533 4566667777766
Q ss_pred CC
Q psy8551 268 GA 269 (581)
Q Consensus 268 ~~ 269 (581)
+|
T Consensus 303 ~N 304 (310)
T 4glp_A 303 GN 304 (310)
T ss_dssp ST
T ss_pred CC
Confidence 65
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=4.4e-18 Score=162.77 Aligned_cols=171 Identities=23% Similarity=0.338 Sum_probs=126.8
Q ss_pred cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ 124 (581)
Q Consensus 45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~ 124 (581)
+++++|+++++.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.+
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l-------------------- 102 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV-------------------- 102 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC--------------------
T ss_pred CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC--------------------
Confidence 678888888888877754 6777888888888888777764 77778888888887753
Q ss_pred ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD 204 (581)
Q Consensus 125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 204 (581)
+.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++++ ..+..+++|+.|++++|.++.+.+
T Consensus 103 ---~~~~--~l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 103 ---KDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp ---CCGG--GGTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred ---CCCh--hhccCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 2222 2677788888888888877763 567778888888888887766 247777888888888887777654
Q ss_pred cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccC
Q psy8551 205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251 (581)
Q Consensus 205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 251 (581)
+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+...+
T Consensus 174 --l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCC
T ss_pred --hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCc
Confidence 677788888888888887765 3777788888888877766544
No 112
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.76 E-value=1e-16 Score=159.65 Aligned_cols=261 Identities=16% Similarity=0.294 Sum_probs=158.9
Q ss_pred CCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEE
Q psy8551 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLV 217 (581)
Q Consensus 138 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 217 (581)
+..++.+.+.+ .++.++..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+...+|..|.+|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 34555555553 3555555555553 4666665544 555555555553 466666654 45555555566666666666
Q ss_pred CCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCc
Q psy8551 218 LTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL 297 (581)
Q Consensus 218 l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 297 (581)
+..|.++.++..+|. +.+|+.+.+..+ +..+....|.++++|+.+.+.. +++.+...+|.+ .+|+.+.+.+ .+
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~--~i 259 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPN--GV 259 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEET--TC
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCC--Cc
Confidence 666666666655555 356666666533 5555566666666666666654 355666666665 5666666644 35
Q ss_pred cccccccccCCCCCcEEecCCCCCc-----cccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCC
Q psy8551 298 KTIEEGALVGLPNLYHLNLKENAFT-----SFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA 371 (581)
Q Consensus 298 ~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 371 (581)
..++..+|.++++|+.+++.++.+. .++. .|..+++|+.+.+..+
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~----------------------------- 310 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES----------------------------- 310 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-----------------------------
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-----------------------------
Confidence 6666666666677777766665543 3332 5556667776666532
Q ss_pred cccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccC
Q psy8551 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451 (581)
Q Consensus 372 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~ 451 (581)
+..+...+|.+|++|+.+.+.. .++.+...+|..+ +|+.+.+.++....+....|.+
T Consensus 311 ---------------------i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~ 367 (401)
T 4fdw_A 311 ---------------------IRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG 367 (401)
T ss_dssp ---------------------CCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred ---------------------eEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence 2345566777777777777754 3666666777777 7888888777777776667766
Q ss_pred Cc-cccEEeecC
Q psy8551 452 LS-YLKRLEITG 462 (581)
Q Consensus 452 ~~-~L~~L~l~~ 462 (581)
++ .++.|++..
T Consensus 368 ~~~~l~~l~vp~ 379 (401)
T 4fdw_A 368 FPDDITVIRVPA 379 (401)
T ss_dssp SCTTCCEEEECG
T ss_pred CCCCccEEEeCH
Confidence 64 577777754
No 113
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.76 E-value=1.4e-16 Score=158.67 Aligned_cols=270 Identities=16% Similarity=0.250 Sum_probs=225.9
Q ss_pred cccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCC
Q psy8551 159 FIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 238 (581)
Q Consensus 159 ~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 238 (581)
+..+..++.+.+.. .++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.+...+|..|++|+
T Consensus 109 ~~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EEecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 34567888888876 4778888888885 7999999876 888888888885 799999987 78889888999999999
Q ss_pred EEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCC
Q psy8551 239 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKE 318 (581)
Q Consensus 239 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 318 (581)
.+++..|.++.++...|. ...|+.+.+.. .++.+...+|.++.+|+.+.+..+ +..++..+|.+ .+|+.+.+ .
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l-p 256 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL-P 256 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE-E
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe-C
Confidence 999999999999988887 58999999974 588999999999999999999975 78888888888 78999999 4
Q ss_pred CCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccC
Q psy8551 319 NAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNIS 397 (581)
Q Consensus 319 ~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 397 (581)
+.++.++. +|..+++|+.+.+.++... ......+.
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~--------------------------------------------~~~~~~I~ 292 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFN--------------------------------------------DDPEAMIH 292 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCC--------------------------------------------CCTTCEEC
T ss_pred CCccEEChhHhhCCCCCCEEEeCCcccc--------------------------------------------CCcccEEC
Confidence 55776654 7778999999999887542 01123567
Q ss_pred ccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCC
Q psy8551 398 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADN 477 (581)
Q Consensus 398 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 477 (581)
...|.+|++|+.+.+. +.++.+....|.+|++|+.+.|..+ ++.+...+|.++ +|+.+++.++ ....+....|.++
T Consensus 293 ~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGF 368 (401)
T ss_dssp TTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCS
T ss_pred HHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCC
Confidence 7889999999999999 4688888889999999999999654 888899999999 9999999984 6667777788887
Q ss_pred C-CCCeeeCCCC
Q psy8551 478 L-NLETLTLNKN 488 (581)
Q Consensus 478 ~-~L~~L~l~~~ 488 (581)
+ +++.|++..+
T Consensus 369 ~~~l~~l~vp~~ 380 (401)
T 4fdw_A 369 PDDITVIRVPAE 380 (401)
T ss_dssp CTTCCEEEECGG
T ss_pred CCCccEEEeCHH
Confidence 4 7889998876
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=2.2e-19 Score=176.50 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=34.2
Q ss_pred CCcEEEcCCCCccccCccccCCC--CCCcEEECCCCcCCccCccccCCCCCCCEEECCCCccc
Q psy8551 188 RLSALDLRGAGLTNISDNAFRGL--SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248 (581)
Q Consensus 188 ~L~~L~L~~~~l~~~~~~~l~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~ 248 (581)
.++.++++++.+. +..+..+ ++++.|++++|.+.+.++. +..+++|++|++++|.+.
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~ 106 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE 106 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC
Confidence 3667777766554 2233434 5677777777766665533 445666777777666554
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=1.7e-18 Score=169.07 Aligned_cols=260 Identities=17% Similarity=0.171 Sum_probs=161.6
Q ss_pred CcCccEEEcccCCcc-cccccccC-CCcccEEEcCCCcee--ecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccc
Q psy8551 44 NPSIQRLVLSTNRIK-TVDSAIPI-YLSLQHVDLSHTTWL--IIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRV 119 (581)
Q Consensus 44 ~~~l~~L~L~~~~i~-~l~~~~~~-~~~L~~L~ls~~~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 119 (581)
.+++++|.++++--. ++ ..+.. +++|++|||++|++. ......+ +.++.+.+..+
T Consensus 24 ~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~----------------- 82 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN----------------- 82 (329)
T ss_dssp HHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT-----------------
T ss_pred hCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccc-----------------
Confidence 357888888865211 11 12333 778888888888877 3332222 22334444433
Q ss_pred cccCcccccccchhhcCC--------CCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcE
Q psy8551 120 EIFGQNRISRIDQACFEG--------LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 191 (581)
Q Consensus 120 ~~l~~~~l~~~~~~~l~~--------~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 191 (581)
.++..+|.+ |++|+.+++++ .++.++..+|.+|++|+.++++.|.+..+.+.+|.++.++..
T Consensus 83 ---------~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~ 152 (329)
T 3sb4_A 83 ---------FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIF 152 (329)
T ss_dssp ---------EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEE
T ss_pred ---------ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEE
Confidence 233344445 67777777776 666666666777777777777777666666666666666665
Q ss_pred EEcCCCC----ccccCccccCCCCCCc--------------------------EEECCCCcCCccCcccc-CCCCCCCEE
Q psy8551 192 LDLRGAG----LTNISDNAFRGLSGLR--------------------------SLVLTDNRLQSIPTKQL-SKLTRLEEL 240 (581)
Q Consensus 192 L~L~~~~----l~~~~~~~l~~~~~L~--------------------------~L~l~~n~l~~~~~~~~-~~l~~L~~L 240 (581)
+.+.... ...+....|..+..|+ .+.+.++ +.......+ ..+++|+++
T Consensus 153 l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l 231 (329)
T 3sb4_A 153 IPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSL 231 (329)
T ss_dssp ECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEE
T ss_pred ecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEE
Confidence 5554421 1122222333334443 2222221 110000011 126778888
Q ss_pred ECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCC-EEeCCCCCCccccccccccCCCCCcEEecCCC
Q psy8551 241 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE-TLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319 (581)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 319 (581)
++++|.++.++...|.++.+|+.+.+.++ ++.++..+|.++.+|+ .+.+++ .+..++..+|.++++|+.+++.++
T Consensus 232 ~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 232 DISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp ECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred ECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence 88888888888888888888888888764 7778888888888888 888877 477777778888888888888888
Q ss_pred CCccccc-cccCCCCcceEEc
Q psy8551 320 AFTSFSE-SMLAWPELRTIDI 339 (581)
Q Consensus 320 ~l~~~~~-~~~~~~~L~~L~l 339 (581)
.++.+++ .|..+++|+.+..
T Consensus 308 ~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 308 KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCCEECTTTTCTTCCCCEEEC
T ss_pred ccCccchhhhcCCcchhhhcc
Confidence 8887765 6667778887754
No 116
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.74 E-value=3.7e-16 Score=156.54 Aligned_cols=322 Identities=18% Similarity=0.287 Sum_probs=198.1
Q ss_pred ccccchhhcCCCC-CCcEEeCCCCcCcccCCcccccCccCcEEECCCCc---ceeccCCcCCCCCCCcEEEcCCCCcccc
Q psy8551 127 ISRIDQACFEGLT-ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV---FTTLADGAFNGLGRLSALDLRGAGLTNI 202 (581)
Q Consensus 127 l~~~~~~~l~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~---~~~~~~~~l~~l~~L~~L~L~~~~l~~~ 202 (581)
++.+...+|.+++ .|+.+.+.. .++.+...+|.+|.+|+.+.+..+. ++.+...+|..+.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 5566677777764 477777764 3667777777777777777776542 55555566666666666555432 4444
Q ss_pred CccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCC
Q psy8551 203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD 282 (581)
Q Consensus 203 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 282 (581)
....|..+.+|+.+.+..+ +..+....+..+..|+.+.+..+ +..+...+|..
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--------------------------~~~I~~~aF~~ 181 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--------------------------VTAIEERAFTG 181 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--------------------------CCEECTTTTTT
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccce--------------------------eeEeccccccc
Confidence 4445555555665555432 44444445555555555555432 33333333332
Q ss_pred CCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccC--------------CCCcceEEccCCCCccCC
Q psy8551 283 NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA--------------WPELRTIDIAENPIECGC 348 (581)
Q Consensus 283 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--------------~~~L~~L~l~~~~~~~~~ 348 (581)
..|+.+.+... ...+...+|..+..+................+.. ...+..+.+
T Consensus 182 -~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--------- 249 (394)
T 4gt6_A 182 -TALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKI--------- 249 (394)
T ss_dssp -CCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC---------
T ss_pred -cceeEEEECCc--ccccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEc---------
Confidence 23444444432 3334444455555555554443333222211111 011111111
Q ss_pred chhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCC
Q psy8551 349 NILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 428 (581)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 428 (581)
...+..+...+|.+|..|+.+.+..+ +..+....|..+
T Consensus 250 -----------------------------------------p~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c 287 (394)
T 4gt6_A 250 -----------------------------------------PNGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNC 287 (394)
T ss_dssp -----------------------------------------CTTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTC
T ss_pred -----------------------------------------CCcceEcccceeeecccccEEecccc-cceecCcccccc
Confidence 12345667788999999999999764 445666788999
Q ss_pred CCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEE
Q psy8551 429 TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 508 (581)
Q Consensus 429 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 508 (581)
+.|+.+.+. +.++.++..+|.+|++|+.+.+.. .++.+...+|.+|.+|+++.+..+ ++.++..+|.+|++|+.+
T Consensus 288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEE
T ss_pred cccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEE
Confidence 999999996 568888889999999999999974 588999999999999999999754 778888899999999999
Q ss_pred EcCCCcceeeccccccCCcceEEecCCCcc
Q psy8551 509 NLKENAFTSFSESMLAWPELRTIDIAENPI 538 (581)
Q Consensus 509 ~l~~n~l~~l~~~~~~~~~L~~L~l~~np~ 538 (581)
++.++.... ..+..+..|+.+.+..+.+
T Consensus 363 ~~~~~~~~~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 363 EYSGSRSQW--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EESSCHHHH--HTCBCCCCC----------
T ss_pred EECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence 999876432 3566788888888876543
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=8.4e-18 Score=150.18 Aligned_cols=137 Identities=28% Similarity=0.365 Sum_probs=109.2
Q ss_pred cCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc--cccCCCcccEEEcCCCceeecCCCCCC
Q psy8551 12 KCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS--AIPIYLSLQHVDLSHTTWLIIPIGGFE 89 (581)
Q Consensus 12 ~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~--~~~~~~~L~~L~ls~~~l~~~~~~~~~ 89 (581)
+||..|.|.. +.+.| ++.+++.+|..+++++++|+|++|.++.++. .+..+++|++|++++|.++.+.+..|.
T Consensus 1 ~CP~~C~C~~---~~l~~--s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 75 (192)
T 1w8a_A 1 DCPAMCHCEG---TTVDC--TGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75 (192)
T ss_dssp CCCTTSEEET---TEEEC--TTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT
T ss_pred CcCCCCEECC---CEEEc--CCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC
Confidence 5999999986 67899 9999999999999999999999999998876 388999999999999999888777888
Q ss_pred CCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEE
Q psy8551 90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 169 (581)
Q Consensus 90 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 169 (581)
.+++|++|++++|. ++.+.+..|.++++|++|++++|.++.+.+..+..+++|++|+
T Consensus 76 ~l~~L~~L~Ls~N~-----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 76 GASHIQELQLGENK-----------------------IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp TCTTCCEEECCSCC-----------------------CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CcccCCEEECCCCc-----------------------CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 88888888888875 3444555566677777777777777766555666666666666
Q ss_pred CCCCcce
Q psy8551 170 VGLNVFT 176 (581)
Q Consensus 170 L~~n~~~ 176 (581)
+++|.+.
T Consensus 133 L~~N~l~ 139 (192)
T 1w8a_A 133 LASNPFN 139 (192)
T ss_dssp CTTCCBC
T ss_pred eCCCCcc
Confidence 6666554
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=4.4e-17 Score=168.79 Aligned_cols=179 Identities=18% Similarity=0.213 Sum_probs=93.1
Q ss_pred CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccc--ccC
Q psy8551 46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE--IFG 123 (581)
Q Consensus 46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~ 123 (581)
++++|+|++|.++.+|..+ +++|++|++++|.++.++ ..+++|++|++++|.+.. ++. +.. .|+ +++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST--LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC--cch-hhc--CCCEEECC
Confidence 4555555555555555433 245555555555555444 223455555555554310 000 000 111 222
Q ss_pred cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccC
Q psy8551 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203 (581)
Q Consensus 124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~ 203 (581)
.|.++.++. .+++|+.|++++|.++.++. .+++|++|++++|.+++++. +. ++|+.|++++|.++.++
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCC
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchh
Confidence 223333333 35666666666666666554 35666666666666666544 33 66666666666666554
Q ss_pred ccccCCCCCC-------cEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCC
Q psy8551 204 DNAFRGLSGL-------RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 252 (581)
Q Consensus 204 ~~~l~~~~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 252 (581)
. +.. +| +.|++++|+++.+|. .+..+++|+.|++++|.++...+
T Consensus 197 ~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 197 A--VPV--RNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp C--CC----------CCEEEECCSSCCCCCCG-GGGGSCTTEEEECCSSSCCHHHH
T ss_pred h--HHH--hhhcccccceEEecCCCcceecCH-HHhcCCCCCEEEeeCCcCCCcCH
Confidence 4 332 44 666666666666663 34446666666666666655443
No 119
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=1.3e-17 Score=159.53 Aligned_cols=186 Identities=25% Similarity=0.345 Sum_probs=151.4
Q ss_pred CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcc
Q psy8551 46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQN 125 (581)
Q Consensus 46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~ 125 (581)
.+..+.+....+.++.. +..+++|++|++++|.++.++ .+..+++|++|++++|.+
T Consensus 25 ~~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l--------------------- 80 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKL--------------------- 80 (291)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCC---------------------
T ss_pred HHHHHHhcCCCcccccc-hhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCcc---------------------
Confidence 44555667777766532 457889999999999998886 488899999999999863
Q ss_pred cccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCcc
Q psy8551 126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN 205 (581)
Q Consensus 126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 205 (581)
+++.+ +.++++|+.|++++|.++.++ .+..+++|++|++++|.++.+. .+..+++|+.|++++|.++.+ .
T Consensus 81 --~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~ 150 (291)
T 1h6t_A 81 --TDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--T 150 (291)
T ss_dssp --CCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--G
T ss_pred --CCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--h
Confidence 33433 788999999999999998865 4888999999999999988764 478889999999999998877 3
Q ss_pred ccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCC
Q psy8551 206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 269 (581)
Q Consensus 206 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 269 (581)
.+..+++|+.|++++|+++++++ +..+++|++|++++|.++.++. +..+++|+.|++++|
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQ 210 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEE
T ss_pred hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCC
Confidence 67888999999999999998874 8889999999999998887643 677777777777765
No 120
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=8.1e-17 Score=142.00 Aligned_cols=153 Identities=24% Similarity=0.408 Sum_probs=128.6
Q ss_pred CCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCC
Q psy8551 407 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN 486 (581)
Q Consensus 407 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~ 486 (581)
.+.+++++++++.++.. ..++|++|++++|.+++..+..+..+++|++|++++ +.++.+.+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccCEEECC
Confidence 56788888888877732 336888999999988888877788889999999988 46777777778899999999999
Q ss_pred CCCCceeecCCccCCCCCccEEEcCCCcceeecccc-ccCCcceEEecCCCcccccCc-hhHHHHHHhhcCC---Cceee
Q psy8551 487 KNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAWPELRTIDIAENPIECGCN-ILWLREMLVRRNT---SAVFC 561 (581)
Q Consensus 487 ~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~l~~np~~c~c~-~~~~~~~~~~~~~---~~~~c 561 (581)
+| .++.+++..+..+++|++|++++|.++.++... ..+++|++|++++||+.|+|+ +.|+..|...... ....|
T Consensus 85 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C 163 (177)
T 2o6r_A 85 EN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 163 (177)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTGGGEESCCBB
T ss_pred CC-CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHhhCccccccCcEe
Confidence 99 788888888899999999999999999988764 679999999999999999998 8899999877533 44567
Q ss_pred CCC
Q psy8551 562 NSP 564 (581)
Q Consensus 562 ~~~ 564 (581)
+.+
T Consensus 164 ~~~ 166 (177)
T 2o6r_A 164 SGS 166 (177)
T ss_dssp TTT
T ss_pred CCC
Confidence 764
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=5.4e-17 Score=170.07 Aligned_cols=179 Identities=23% Similarity=0.317 Sum_probs=149.5
Q ss_pred CcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccC
Q psy8551 44 NPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFG 123 (581)
Q Consensus 44 ~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~ 123 (581)
.++|++|+++++.+..++ .+..+++|++|+|++|.++.+++ +..+++|++|+|++|.+
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l------------------- 99 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI------------------- 99 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC-------------------
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC-------------------
Confidence 378999999999999887 48889999999999999988875 88899999999999864
Q ss_pred cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccC
Q psy8551 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203 (581)
Q Consensus 124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~ 203 (581)
..++ .+..+++|+.|++++|.+..++ .+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+..+.
T Consensus 100 ----~~l~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 100 ----KDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp ----CCCT--TSTTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred ----CCCh--hhccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 2222 3778899999999999998864 588899999999999998887 35888999999999999998876
Q ss_pred ccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCC
Q psy8551 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258 (581)
Q Consensus 204 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 258 (581)
+ +..+++|+.|+|++|+++.++ .+..+++|+.|++++|.+...+...+..+
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred h--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcccccccE
Confidence 6 888999999999999999875 48889999999999998887655444433
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=2.6e-18 Score=172.03 Aligned_cols=119 Identities=23% Similarity=0.354 Sum_probs=67.6
Q ss_pred CCCCCCCEEeCCCCCCccc-----cccccccCCCCCcEEecCCCCC-----ccccccccCCCCcceEEccCCCCccCCch
Q psy8551 281 ADNLNLETLTLNKNPKLKT-----IEEGALVGLPNLYHLNLKENAF-----TSFSESMLAWPELRTIDIAENPIECGCNI 350 (581)
Q Consensus 281 ~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 350 (581)
..+++|++|++++| .++. +....+..+++|+.|++++|.+ ..++..+..+++|++|++++|.+......
T Consensus 184 ~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 184 QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 34456666666666 3331 1122456667777777777776 34555666677777777777765421000
Q ss_pred hhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCcccc--CCCCCCCEEEcCCCcCCc----cChhh
Q psy8551 351 LWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAF--RGLSGLRSLVLTDNRLQS----IPTKQ 424 (581)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~--~~~~~L~~L~l~~n~l~~----~~~~~ 424 (581)
. + ...+ ..+++|+.|++++|.++. ..+..
T Consensus 263 ~--------------------------------------------l-~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~ 297 (386)
T 2ca6_A 263 A--------------------------------------------V-VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297 (386)
T ss_dssp H--------------------------------------------H-HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred H--------------------------------------------H-HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence 0 0 0112 225677777777777766 12233
Q ss_pred h-cCCCCCcEeecCCCcceeec
Q psy8551 425 L-SKLTRLEELEIGQNGFSMLE 445 (581)
Q Consensus 425 l-~~l~~L~~L~l~~~~i~~~~ 445 (581)
+ .++++|++|++++|.+++..
T Consensus 298 l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 298 IDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHCTTCCEEECTTSBSCTTS
T ss_pred HHhcCCCceEEEccCCcCCcch
Confidence 3 55677777777777776544
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=5.5e-17 Score=143.09 Aligned_cols=136 Identities=29% Similarity=0.426 Sum_probs=110.8
Q ss_pred CCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCC
Q psy8551 13 CMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQ 91 (581)
Q Consensus 13 ~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l 91 (581)
||..|+|.. +.+.| .+.+++.+|..+++++++|++++|+++.++. .+..+++|++|++++|.++.++...|..+
T Consensus 1 Cp~~C~C~~---~~l~~--~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 75 (177)
T 2o6r_A 1 CPSRCSCSG---TEIRC--NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75 (177)
T ss_dssp CCTTCEEET---TEEEC--CSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CcCCCEeCC---CEEEe--cCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCC
Confidence 899999965 67899 9999999999999999999999999998875 56889999999999999998887778888
Q ss_pred CcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECC
Q psy8551 92 EKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG 171 (581)
Q Consensus 92 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~ 171 (581)
++|++|++++|. ++.+++..+..+++|++|++++|.++.++...+..+++|++|+++
T Consensus 76 ~~L~~L~l~~N~-----------------------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 76 TKLTILYLHENK-----------------------LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TTCCEEECCSSC-----------------------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CccCEEECCCCC-----------------------ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 888888888875 344445556777788888888887777776566667777777777
Q ss_pred CCcce
Q psy8551 172 LNVFT 176 (581)
Q Consensus 172 ~n~~~ 176 (581)
+|.+.
T Consensus 133 ~N~~~ 137 (177)
T 2o6r_A 133 TNPWD 137 (177)
T ss_dssp SSCBC
T ss_pred CCCee
Confidence 77654
No 124
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.71 E-value=1.9e-15 Score=151.35 Aligned_cols=314 Identities=15% Similarity=0.298 Sum_probs=204.7
Q ss_pred ccccccchhhcCCCCCCcEEeCCCC---cCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccc
Q psy8551 125 NRISRIDQACFEGLTALRILYLDDN---QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201 (581)
Q Consensus 125 ~~l~~~~~~~l~~~~~L~~L~l~~~---~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~ 201 (581)
+.++.+...+|.+|.+|+.+.+..+ .++.+...+|..+.+|+.+.+..+ ++.+...+|..+.+|+.+.+.. .+..
T Consensus 73 ~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~-~~~~ 150 (394)
T 4gt6_A 73 DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPE-GVTS 150 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCT-TCCE
T ss_pred CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccc-eeee
Confidence 4578889999999999999999865 377888889999999999988764 6778888899999999999975 4566
Q ss_pred cCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCC
Q psy8551 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281 (581)
Q Consensus 202 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 281 (581)
+....|..+..|+.+.+..+ ++.+...+|.. .+|+.+.+..+ +..+....|..+..++........ ........+.
T Consensus 151 I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~-~~~~~~~~~~ 226 (394)
T 4gt6_A 151 VADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTITSDSES-YPAIDNVLYE 226 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSS-SCBSSSCEEE
T ss_pred ecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceecccccc-cccccceeec
Confidence 77778999999999999875 77777777765 57999988764 455566667777777766654321 1111110000
Q ss_pred CCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCcccc-ccccCCCCcceEEccCCCCccCCchhhHHHHHhhc
Q psy8551 282 DNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREMLVRR 360 (581)
Q Consensus 282 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 360 (581)
. + .........+.....+..+.+.. .++.+. .+|..+..|+.+.+..+
T Consensus 227 ~-----------~-~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~------------------ 275 (394)
T 4gt6_A 227 K-----------S-ANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS------------------ 275 (394)
T ss_dssp E-----------C-TTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT------------------
T ss_pred c-----------c-ccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccc------------------
Confidence 0 0 00000000111222233333322 222222 24455566666666442
Q ss_pred CCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCc
Q psy8551 361 NTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG 440 (581)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~ 440 (581)
+..+....|.+|+.|+.+.+. +.++.++...|..|++|+++.|..+
T Consensus 276 --------------------------------~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~- 321 (394)
T 4gt6_A 276 --------------------------------VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG- 321 (394)
T ss_dssp --------------------------------CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-
T ss_pred --------------------------------cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-
Confidence 223455667777888888885 3566677777888888888888653
Q ss_pred ceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcc
Q psy8551 441 FSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAF 515 (581)
Q Consensus 441 i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l 515 (581)
++.+...+|.+|++|+++.+.. .++.+...+|.+|.+|+.+++.++ ... + ..+..+.+|+.+.+..+.+
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~-~~~-~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS-RSQ-W--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC-HHH-H--HTCBCCCCC----------
T ss_pred ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc-eee-h--hhhhccCCCCEEEeCCCCE
Confidence 7777778888888888888853 477788888888888888888876 222 2 3466778888888776543
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=2.4e-16 Score=163.24 Aligned_cols=181 Identities=21% Similarity=0.225 Sum_probs=137.6
Q ss_pred cccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCC
Q psy8551 69 SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148 (581)
Q Consensus 69 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 148 (581)
+|++|++++|.++.+|...+ ++|++|++++|.+ +.++ ..+++|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l-----------------------~~ip----~~l~~L~~L~Ls~ 109 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNAL-----------------------ISLP----ELPASLEYLDACD 109 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCC-----------------------SCCC----CCCTTCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCC-----------------------cccc----cccCCCCEEEccC
Confidence 89999999999999886543 7899999999874 2233 2368888999999
Q ss_pred CcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCc
Q psy8551 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT 228 (581)
Q Consensus 149 ~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 228 (581)
|.++.++. +.. +|++|++++|.+++++. .+++|+.|++++|.++.++. .+++|+.|++++|+++.++.
T Consensus 110 N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~ 177 (571)
T 3cvr_A 110 NRLSTLPE--LPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE 177 (571)
T ss_dssp SCCSCCCC--CCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC
T ss_pred CCCCCcch--hhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch
Confidence 98888765 443 88899999988888655 57889999999988887654 46788999999998888775
Q ss_pred cccCCCCCCCEEECCCCcccccCCcccCCCccc-------ceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccc
Q psy8551 229 KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL-------KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE 301 (581)
Q Consensus 229 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 301 (581)
+. ++|+.|++++|.++.++. +.. +| +.|++++| .++.++.. +..+++|+.|++++|...+.++
T Consensus 178 --l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 178 --LP--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCREN-RITHIPEN-ILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp --CC--TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSS-CCCCCCGG-GGGSCTTEEEECCSSSCCHHHH
T ss_pred --hh--CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCC-cceecCHH-HhcCCCCCEEEeeCCcCCCcCH
Confidence 54 789999999998886665 433 66 88888886 56666554 3448889999999995444433
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.2e-17 Score=157.11 Aligned_cols=171 Identities=20% Similarity=0.251 Sum_probs=141.1
Q ss_pred cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ 124 (581)
Q Consensus 45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~ 124 (581)
.++..++++++.+++++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~--------------------- 74 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQ--------------------- 74 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSC---------------------
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCc---------------------
Confidence 56778888999998887 5778899999999999998877 58888999999999886
Q ss_pred ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD 204 (581)
Q Consensus 125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 204 (581)
++++++ ++++++|+.|++++|.++.++. +.. ++|++|++++|.+++++ .+..+++|+.|++++|+++.+.
T Consensus 75 --i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~- 144 (263)
T 1xeu_A 75 --ISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV- 144 (263)
T ss_dssp --CCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG-
T ss_pred --cCCChh--hccCCCCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh-
Confidence 334444 7788999999999999988765 233 88999999999988864 4888899999999999888774
Q ss_pred cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCC
Q psy8551 205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 252 (581)
Q Consensus 205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 252 (581)
.+..+++|+.|++++|+++++ ..+..+++|+.|++++|.+...+.
T Consensus 145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred -HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 577888999999999999887 458888999999999988776543
No 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.69 E-value=1.5e-16 Score=138.82 Aligned_cols=141 Identities=21% Similarity=0.386 Sum_probs=104.7
Q ss_pred CCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCC
Q psy8551 407 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN 486 (581)
Q Consensus 407 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~ 486 (581)
.+.++++++.++.++.. + .++|++|++++|.+++ +.+..|.++++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N~i~~-------------------------~~~~~~~~l~~L~~L~Ls 62 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG-I--PTTTQVLYLYDNQITK-------------------------LEPGVFDRLTQLTRLDLD 62 (170)
T ss_dssp TTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCC-------------------------CCTTTTTTCTTCSEEECC
T ss_pred CCEEEeCCCCcCccCcc-C--CCCCcEEEcCCCcCCc-------------------------cChhhhcCcccCCEEECC
Confidence 45666666666655521 1 2455555555555444 444556667778888888
Q ss_pred CCCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCc-hhHHHHHHhhc----------
Q psy8551 487 KNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCN-ILWLREMLVRR---------- 554 (581)
Q Consensus 487 ~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~-~~~~~~~~~~~---------- 554 (581)
+| .+..+++..|.++++|++|++++|+|+.++.. +..+++|++|++++||+.|+|. +.|+.+|++..
T Consensus 63 ~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~ 141 (170)
T 3g39_A 63 NN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNL 141 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGEECSSSB
T ss_pred CC-CcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcceeeccccC
Confidence 88 78888888889999999999999999998864 7789999999999999999995 99999999874
Q ss_pred CCCceeeCCCcccccccccccCcccc
Q psy8551 555 NTSAVFCNSPAPLKYKSLISLSAEDL 580 (581)
Q Consensus 555 ~~~~~~c~~~~~~~~~~~~~~~~~~~ 580 (581)
.+..+.|+.+ |.++.++++++.
T Consensus 142 ~~~~~~C~~~----~~~~~~~~~~~~ 163 (170)
T 3g39_A 142 DPDSARCSGT----NTPVRAVTEAST 163 (170)
T ss_dssp CGGGSBBCC-----CCBGGGCCSTTC
T ss_pred CcccceeCCC----Cccchhcccccc
Confidence 2334568765 688888887653
No 128
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=6.7e-17 Score=169.41 Aligned_cols=188 Identities=24% Similarity=0.340 Sum_probs=160.8
Q ss_pred cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ 124 (581)
Q Consensus 45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~ 124 (581)
..+..+.+..+.+.++.. +..+++|+.|++++|.+..++ .+..+++|++|+|++|.+
T Consensus 21 ~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l-------------------- 77 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKL-------------------- 77 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCC--------------------
T ss_pred HHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCC--------------------
Confidence 456667777777776644 568899999999999999887 588999999999999863
Q ss_pred ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD 204 (581)
Q Consensus 125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 204 (581)
+.+.+ +..+++|+.|++++|.+..++ .+..+++|+.|+|++|.+..++ .+..+++|+.|+|++|.++.+
T Consensus 78 ---~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l-- 146 (605)
T 1m9s_A 78 ---TDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI-- 146 (605)
T ss_dssp ---CCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--
T ss_pred ---CCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--
Confidence 33333 778999999999999999876 5888999999999999998864 488999999999999999987
Q ss_pred cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCC
Q psy8551 205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 270 (581)
Q Consensus 205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 270 (581)
..+..+++|+.|+|++|.++.+++ +..+++|++|++++|.+..++ .+..+++|+.|++.+|.
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEE
T ss_pred hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCc
Confidence 468899999999999999998875 889999999999999998863 47889999999999863
No 129
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=9e-17 Score=144.33 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=106.0
Q ss_pred cCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEE
Q psy8551 65 PIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRIL 144 (581)
Q Consensus 65 ~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L 144 (581)
..+++|++|++++|.++.++ .+..+++|++|++++|.+ +.+ ..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~-----------------------~~~--~~l~~l~~L~~L 93 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHA-----------------------TNY--NPISGLSNLERL 93 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCC-----------------------SCC--GGGTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCC-----------------------Ccc--hhhhcCCCCCEE
Confidence 45667777777777777655 466677777777777642 111 135667777777
Q ss_pred eCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCC-ccccCccccCCCCCCcEEECCCCcC
Q psy8551 145 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG-LTNISDNAFRGLSGLRSLVLTDNRL 223 (581)
Q Consensus 145 ~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~l~~n~l 223 (581)
++++|.++......+..+++|++|++++|.+++..+..+..+++|+.|++++|. ++.++ .+..+++|+.|++++|++
T Consensus 94 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 94 RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp EEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCC
T ss_pred EeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCC
Confidence 777777776444467777778888888777776544557777888888888876 66554 467778888888888888
Q ss_pred CccCccccCCCCCCCEEECCCCcccc
Q psy8551 224 QSIPTKQLSKLTRLEELEIGQNGFSM 249 (581)
Q Consensus 224 ~~~~~~~~~~l~~L~~L~l~~~~~~~ 249 (581)
+.++ .+..+++|++|++++|++.+
T Consensus 172 ~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 172 HDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCT--TGGGCSSCCEEEECBC----
T ss_pred cChH--HhccCCCCCEEEeeCcccCC
Confidence 8765 47778888888888887653
No 130
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=5.1e-17 Score=145.93 Aligned_cols=150 Identities=13% Similarity=0.179 Sum_probs=82.7
Q ss_pred cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ 124 (581)
Q Consensus 45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~ 124 (581)
+++++|+++++.++.+| .+..+++|++|++++|.++.++ .+..+++|++|++++|.+
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l-------------------- 100 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDV-------------------- 100 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTC--------------------
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCcc--------------------
Confidence 45666666666666555 4556666666666666554443 355566666666665542
Q ss_pred ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCc-ceeccCCcCCCCCCCcEEEcCCCCccccC
Q psy8551 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV-FTTLADGAFNGLGRLSALDLRGAGLTNIS 203 (581)
Q Consensus 125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~L~~~~l~~~~ 203 (581)
+...+..++.+++|++|++++|.++......+..+++|++|++++|. ++.++ .+..+++|+.|++++|.++.+.
T Consensus 101 ---~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 101 ---TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp ---BGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT
T ss_pred ---CcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH
Confidence 22222335555666666666666655333445556666666666665 44443 3555666666666666655543
Q ss_pred ccccCCCCCCcEEECCCCcCC
Q psy8551 204 DNAFRGLSGLRSLVLTDNRLQ 224 (581)
Q Consensus 204 ~~~l~~~~~L~~L~l~~n~l~ 224 (581)
.+..+++|+.|++++|++.
T Consensus 176 --~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 --GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp --TGGGCSSCCEEEECBC---
T ss_pred --HhccCCCCCEEEeeCcccC
Confidence 3555566666666665543
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.66 E-value=7.8e-16 Score=134.69 Aligned_cols=140 Identities=24% Similarity=0.422 Sum_probs=104.6
Q ss_pred CEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCC
Q psy8551 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK 487 (581)
Q Consensus 408 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~ 487 (581)
+.++++++.++.++.. + .++|++|++++|.+++. .+..|.++++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~-~--~~~L~~L~Ls~N~l~~~-------------------------~~~~~~~l~~L~~L~Ls~ 66 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-I--PTDKQRLWLNNNQITKL-------------------------EPGVFDHLVNLQQLYFNS 66 (174)
T ss_dssp SEEECCSSCCSSCCSC-C--CTTCSEEECCSSCCCCC-------------------------CTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCC-c--CCCCcEEEeCCCCcccc-------------------------CHHHhcCCcCCCEEECCC
Confidence 5667777666666532 2 25566666665555544 344566677777778887
Q ss_pred CCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCc-hhHHHHHHhhc-----------
Q psy8551 488 NPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCN-ILWLREMLVRR----------- 554 (581)
Q Consensus 488 ~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~-~~~~~~~~~~~----------- 554 (581)
| .+..+++..+.++++|++|++++|.|+.++.. +..+++|++|++++|||.|+|. +.|+..|....
T Consensus 67 N-~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~ 145 (174)
T 2r9u_A 67 N-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVMRWDGKA 145 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGGEEEESSSE
T ss_pred C-CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhcccccccccccc
Confidence 8 77888777788999999999999999998875 7789999999999999999996 88999999774
Q ss_pred --CCCceeeCCCcccccccccccCcccc
Q psy8551 555 --NTSAVFCNSPAPLKYKSLISLSAEDL 580 (581)
Q Consensus 555 --~~~~~~c~~~~~~~~~~~~~~~~~~~ 580 (581)
++..+.|+.+ |.++.+++++++
T Consensus 146 ~~~~~~~~C~~~----~~~~~~~~~~~~ 169 (174)
T 2r9u_A 146 VNDPDSAKCAGT----NTPVRAVTEAST 169 (174)
T ss_dssp EECGGGSBBTTT----CCBGGGCCGGGC
T ss_pred cCCcccCEECCC----Cccceecccccc
Confidence 2344567764 577777777654
No 132
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=9.7e-16 Score=144.04 Aligned_cols=162 Identities=23% Similarity=0.358 Sum_probs=135.9
Q ss_pred ccCCCccCCC-CCCcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccc
Q psy8551 32 QEANLDVIPS-HSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIV 110 (581)
Q Consensus 32 ~~~~l~~ip~-~~~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 110 (581)
.+..++.++. .-.+++++|++++|.++.++ .+..+++|++|++++|+++.++. +..+++|++|++++|.+
T Consensus 27 ~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l------ 97 (263)
T 1xeu_A 27 GKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL------ 97 (263)
T ss_dssp TCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC------
T ss_pred cCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc------
Confidence 6677777662 22389999999999999998 68899999999999999999886 89999999999999874
Q ss_pred cccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCc
Q psy8551 111 CSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 190 (581)
Q Consensus 111 ~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 190 (581)
+.++. +.. ++|+.|++++|.++.++ .+..+++|++|++++|.+++++ .+..+++|+
T Consensus 98 -----------------~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~ 153 (263)
T 1xeu_A 98 -----------------KNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLE 153 (263)
T ss_dssp -----------------SCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCC
T ss_pred -----------------CCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCC
Confidence 22222 223 88999999999998874 5888999999999999998875 488899999
Q ss_pred EEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCc
Q psy8551 191 ALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT 228 (581)
Q Consensus 191 ~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 228 (581)
.|++++|.++.. ..+..+++|+.|++++|.++..+.
T Consensus 154 ~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 154 VLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp EEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred EEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 999999999887 468889999999999998887664
No 133
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.62 E-value=3e-13 Score=134.78 Aligned_cols=300 Identities=18% Similarity=0.267 Sum_probs=182.8
Q ss_pred ccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccc
Q psy8551 127 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206 (581)
Q Consensus 127 l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~ 206 (581)
++.+...+|.+|.+|+.+++.. .++.+...+|.++ +|+.+.+..+ ++.+...+|..+ +|+.+.+..+ ++.+....
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~ 131 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYI 131 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTT
T ss_pred ccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc-cccccccc
Confidence 6677777888888888888864 4777777778776 5777776543 566666666654 6888887754 44455555
Q ss_pred cCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCC
Q psy8551 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNL 286 (581)
Q Consensus 207 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 286 (581)
|..+ ++..+.+..+ ++.+....+..+..++.+.+.............. ... .......+.....+
T Consensus 132 F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~ 196 (379)
T 4h09_A 132 FYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNK------------NKTILESYPAAKTG 196 (379)
T ss_dssp TTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EET------------TSSEEEECCTTCCC
T ss_pred cccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-ccc------------ccceeccccccccc
Confidence 5544 5666665543 5556556677777777776654432211110000 000 00001122333445
Q ss_pred CEEeCCCCCCccccccccccCCCCCcEEecCCCCCcccc-ccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCce
Q psy8551 287 ETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAV 365 (581)
Q Consensus 287 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (581)
..+.+... ...+....+..+..++.+.+..+ +..+. ..+..+..|+.+.+..+
T Consensus 197 ~~~~~~~~--~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~----------------------- 250 (379)
T 4h09_A 197 TEFTIPST--VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN----------------------- 250 (379)
T ss_dssp SEEECCTT--CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-----------------------
T ss_pred cccccccc--eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-----------------------
Confidence 55555443 33344445556666666666544 33332 24455666666666442
Q ss_pred eecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeec
Q psy8551 366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445 (581)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~ 445 (581)
+..+....|.++..|+.+.+.. .+..++...|..|++|+.+.+.++.++.+.
T Consensus 251 ---------------------------v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~ 302 (379)
T 4h09_A 251 ---------------------------VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLE 302 (379)
T ss_dssp ---------------------------CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEEC
T ss_pred ---------------------------ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceeh
Confidence 2345556677777777777754 355666667777788888887777777777
Q ss_pred cccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCC
Q psy8551 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 504 (581)
Q Consensus 446 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~ 504 (581)
..+|.+|++|+.+.+.. .++.+...+|.+|.+|+++.+..+ ++.++..+|.+++.
T Consensus 303 ~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 303 PRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS--ITLIESGAFEGSSI 357 (379)
T ss_dssp TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTSSC
T ss_pred hhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhhCCCC
Confidence 77788888888887753 477777778888888888877654 66777777777643
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=3.8e-18 Score=177.77 Aligned_cols=199 Identities=19% Similarity=0.231 Sum_probs=140.9
Q ss_pred CcCccEEEcccCCcccccccccCCCcccEEEcCCCc-------------eeecCCCCCCCCCcccEEe-CCCCCCCCccc
Q psy8551 44 NPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTT-------------WLIIPIGGFEPQEKLVELQ-LNHNKHFPQQI 109 (581)
Q Consensus 44 ~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~-------------l~~~~~~~~~~l~~L~~L~-l~~n~~~~~~~ 109 (581)
.++++.|+|++|+++.+|..++++++|+.|++++|. .....+..+..+++|+.|+ ++.|.+
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~----- 422 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL----- 422 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-----
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-----
Confidence 357777778888777777777777888887776653 1122223344555555555 343321
Q ss_pred ccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCC
Q psy8551 110 VCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG 187 (581)
Q Consensus 110 ~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~ 187 (581)
..|. .+..|.++.++. ..|+.|++++|.++.++. +..+++|+.|++++|.++.++. .+..++
T Consensus 423 -------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~ 486 (567)
T 1dce_A 423 -------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALR 486 (567)
T ss_dssp -------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCT
T ss_pred -------chhhhhhhhcccccccCc------cCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccch-hhhcCC
Confidence 1222 233344444432 258899999999998874 8889999999999999986654 688899
Q ss_pred CCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccC-ccccCCCCCCCEEECCCCcccccCCcc---cCCCcccce
Q psy8551 188 RLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP-TKQLSKLTRLEELEIGQNGFSMLEAGC---FKGLSYLKR 263 (581)
Q Consensus 188 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~ 263 (581)
+|+.|++++|.++.++ .+..+++|+.|++++|++++++ +..+..+++|+.|++++|.++..++.. +..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 9999999999998864 6888999999999999999885 577888999999999999888776532 223455555
Q ss_pred ee
Q psy8551 264 LE 265 (581)
Q Consensus 264 L~ 265 (581)
|+
T Consensus 565 L~ 566 (567)
T 1dce_A 565 IL 566 (567)
T ss_dssp EE
T ss_pred cC
Confidence 53
No 135
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.59 E-value=8.4e-13 Score=131.55 Aligned_cols=300 Identities=18% Similarity=0.215 Sum_probs=184.6
Q ss_pred CCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEE
Q psy8551 137 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSL 216 (581)
Q Consensus 137 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 216 (581)
...+|+.+.+.. .++.++..+|.+|.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~------------------- 101 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER------------------- 101 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-------------------
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-------------------
Confidence 344555555542 344555555555555555555432 444444445444 3444444322
Q ss_pred ECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCC
Q psy8551 217 VLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPK 296 (581)
Q Consensus 217 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 296 (581)
++.+...+|..+ +|+.+.+..+ +..+....|.+. .++.+.+. ..++.+....|..+..++.+.+.....
T Consensus 102 ------l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~--~~v~~i~~~~f~~~~~l~~~~~~~~~~ 170 (379)
T 4h09_A 102 ------VKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIP--KSVTTIKDGIGYKAENLEKIEVSSNNK 170 (379)
T ss_dssp ------CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEEEC--TTCCEECSCTTTTCTTCCEEEECTTCS
T ss_pred ------eeEeccceeccC-CcccccCCCc-cccccccccccc-eeeeeecc--ceeeccccchhcccccccccccccccc
Confidence 333333334332 4444444432 223333333332 23333332 234444444555555555554443311
Q ss_pred cc-----------ccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCce
Q psy8551 297 LK-----------TIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAV 365 (581)
Q Consensus 297 ~~-----------~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (581)
.. ......+.....+..+.+...........+.....++.+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~----------------------- 227 (379)
T 4h09_A 171 NYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG----------------------- 227 (379)
T ss_dssp SEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-----------------------
T ss_pred eeecccceecccccceeccccccccccccccccceeEEeecccccccccceeeeccc-----------------------
Confidence 10 01111344555666666655433333345566777887777543
Q ss_pred eecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeec
Q psy8551 366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445 (581)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~ 445 (581)
+..+....|.++..|+.+.+..+ ++.+....+..+.+|+.+.+.. .+...+
T Consensus 228 ---------------------------~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~ 278 (379)
T 4h09_A 228 ---------------------------VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVP 278 (379)
T ss_dssp ---------------------------CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEEC
T ss_pred ---------------------------eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecc
Confidence 34466678888999999999875 7778878899999999999965 477888
Q ss_pred cccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-cccc
Q psy8551 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLA 524 (581)
Q Consensus 446 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~ 524 (581)
..+|.+|++|+.+.+.+ +.++.+...+|.+|.+|+.+.+..+ ++.++..+|.+|++|+++.+..+ ++.+.+ .+..
T Consensus 279 ~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 279 YLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp TTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred ccccccccccccccccc-cccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 88999999999999976 5788999999999999999999764 78898899999999999999764 776653 3444
Q ss_pred C
Q psy8551 525 W 525 (581)
Q Consensus 525 ~ 525 (581)
+
T Consensus 355 c 355 (379)
T 4h09_A 355 S 355 (379)
T ss_dssp S
T ss_pred C
Confidence 4
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=1.8e-15 Score=132.06 Aligned_cols=136 Identities=21% Similarity=0.253 Sum_probs=76.9
Q ss_pred CCCCCCcCccEEEcccCCcc--cccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCc
Q psy8551 39 IPSHSNPSIQRLVLSTNRIK--TVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISP 116 (581)
Q Consensus 39 ip~~~~~~l~~L~L~~~~i~--~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 116 (581)
++...++++++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+
T Consensus 18 ~~~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l------------ 83 (168)
T 2ell_A 18 LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRI------------ 83 (168)
T ss_dssp HTTSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCC------------
T ss_pred hccCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcC------------
Confidence 34455567778888877777 6777677777777777777777666 4566666777777766653
Q ss_pred ccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcEEECCCCcceeccC---CcCCCCCCCcEE
Q psy8551 117 RRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLAD---GAFNGLGRLSAL 192 (581)
Q Consensus 117 ~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L 192 (581)
+...+..+..+++|++|++++|.++.++. ..+..+++|++|++++|.++..+. ..+..+++|+.|
T Consensus 84 -----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 84 -----------FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp -----------CSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred -----------chHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence 22122233445566666666665555432 244445555555555554444333 233344444444
Q ss_pred EcCCCCc
Q psy8551 193 DLRGAGL 199 (581)
Q Consensus 193 ~L~~~~l 199 (581)
++++|.+
T Consensus 153 ~l~~n~~ 159 (168)
T 2ell_A 153 DGYDRED 159 (168)
T ss_dssp TTEETTS
T ss_pred cCCCCCh
Confidence 4444433
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.58 E-value=6.5e-15 Score=145.05 Aligned_cols=140 Identities=26% Similarity=0.364 Sum_probs=102.1
Q ss_pred EEEcCCC-cCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCC
Q psy8551 409 SLVLTDN-RLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK 487 (581)
Q Consensus 409 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~ 487 (581)
.++.+++ .++.+|. +..+++|++|+|++ ++.+..+.+..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~------------------------~n~l~~~~~~~~~~l~~L~~L~l~~ 65 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIEN------------------------QQHLQHLELRDLRGLGELRNLTIVK 65 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCS------------------------CSSCCEECGGGSCSCCCCSEEECCS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccC------------------------CCCCCCcChhHhccccCCCEEECCC
Confidence 3455555 5655553 55555555555553 2344444445566677777888888
Q ss_pred CCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCcccccCchhHHHHHHhhcC----CCceeeCC
Q psy8551 488 NPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRN----TSAVFCNS 563 (581)
Q Consensus 488 ~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~~----~~~~~c~~ 563 (581)
| .+..+++..|.++++|++|+|++|+|+.+|..+.....|++|++.+|++.|+|++.||..|.+... ...+.|..
T Consensus 66 N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~ 144 (347)
T 2ifg_A 66 S-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHG 144 (347)
T ss_dssp S-CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSS
T ss_pred C-ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCC
Confidence 8 788887888899999999999999999988766655559999999999999999999999998743 35678998
Q ss_pred Cccccccccccc
Q psy8551 564 PAPLKYKSLISL 575 (581)
Q Consensus 564 ~~~~~~~~~~~~ 575 (581)
|..++..++..+
T Consensus 145 ~~~l~~l~~~~c 156 (347)
T 2ifg_A 145 QGPLAHMPNASC 156 (347)
T ss_dssp SSCSSCCCCTTC
T ss_pred ChHHhcCCcccC
Confidence 876665554433
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=5.2e-15 Score=129.01 Aligned_cols=115 Identities=23% Similarity=0.427 Sum_probs=98.8
Q ss_pred cCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCCCCC
Q psy8551 12 KCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFEP 90 (581)
Q Consensus 12 ~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~~~~ 90 (581)
+||..|+|.. ..+.| ++..++.+|..+++++++|+|++|.|+.++ ..|.++++|++|+|++|+|+.++...|..
T Consensus 2 ~CP~~C~C~~---~~l~~--s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 76 (170)
T 3g39_A 2 ACPSQCSCSG---TTVDC--SGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76 (170)
T ss_dssp CCC-CCEEET---TEEEC--TTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred cCcCcCCcCC---CEEEe--CCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC
Confidence 6999999976 67899 999999999999999999999999999884 57889999999999999999999888899
Q ss_pred CCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCccc
Q psy8551 91 QEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSV 154 (581)
Q Consensus 91 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~ 154 (581)
+++|++|++++|. ++.+++..|..+++|+.|++++|.+...
T Consensus 77 l~~L~~L~L~~N~-----------------------l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 77 LTQLTQLSLNDNQ-----------------------LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CTTCCEEECCSSC-----------------------CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCCCEEECCCCc-----------------------cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999999999875 4555566678888888999888877644
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.57 E-value=7.1e-15 Score=128.55 Aligned_cols=117 Identities=25% Similarity=0.420 Sum_probs=101.9
Q ss_pred hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCCCC
Q psy8551 11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFE 89 (581)
Q Consensus 11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~~~ 89 (581)
.+||..|+|.. ..+.| ++.+++.+|..+++++++|+|++|.++.++ ..|.++++|++|+|++|+|+.++...|.
T Consensus 4 ~~CP~~C~C~~---~~l~~--~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 4 AGCPSQCSCDQ---TLVNC--QNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78 (174)
T ss_dssp CSSCTTSEECS---SEEEC--CSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCCEECC---cEEEe--CCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC
Confidence 57999999976 67899 999999999999999999999999999884 5788999999999999999999988889
Q ss_pred CCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccC
Q psy8551 90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 155 (581)
Q Consensus 90 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 155 (581)
.+++|++|++++|. ++.+++..|..+++|++|++++|.+...+
T Consensus 79 ~l~~L~~L~L~~N~-----------------------l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 79 KLTQLTQLDLNDNH-----------------------LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TCTTCCEEECCSSC-----------------------CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CcchhhEEECCCCc-----------------------cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 99999999999886 44555666888889999999988877554
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=1.6e-14 Score=123.16 Aligned_cols=126 Identities=23% Similarity=0.245 Sum_probs=74.8
Q ss_pred CcCccEEEcccCCcc--cccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccc
Q psy8551 44 NPSIQRLVLSTNRIK--TVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEI 121 (581)
Q Consensus 44 ~~~l~~L~L~~~~i~--~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 121 (581)
++++++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i----------------- 76 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRV----------------- 76 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCC-----------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcc-----------------
Confidence 467777777777776 6666667777777777777777666 4566667777777776653
Q ss_pred cCcccccccchhhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcEEECCCCcceeccC---CcCCCCCCCcEEEc
Q psy8551 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLAD---GAFNGLGRLSALDL 194 (581)
Q Consensus 122 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~L 194 (581)
+...+..+..+++|++|++++|.++.++. ..+..+++|++|++++|.+++.++ ..+..+++|+.|++
T Consensus 77 ------~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 77 ------SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ------CSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ------cchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 22223334455666666666666655431 245555555555555555554443 23444445555444
No 141
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=4.2e-14 Score=123.32 Aligned_cols=136 Identities=21% Similarity=0.138 Sum_probs=98.7
Q ss_pred CCCcccEEEcCCCcee--ecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcE
Q psy8551 66 IYLSLQHVDLSHTTWL--IIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRI 143 (581)
Q Consensus 66 ~~~~L~~L~ls~~~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~ 143 (581)
..++|++|++++|.++ .++. .+..+++|++|++++|.+ +.+ ..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l-----------------------~~~--~~~~~l~~L~~ 75 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGL-----------------------ISV--SNLPKLPKLKK 75 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCC-----------------------CCC--SSCCCCSSCCE
T ss_pred CcccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCC-----------------------CCh--hhhccCCCCCE
Confidence 4578999999999988 6664 578888999999988763 223 34677888888
Q ss_pred EeCCCCcCcccCCcccccCccCcEEECCCCcceeccC-CcCCCCCCCcEEEcCCCCccccCc---cccCCCCCCcEEECC
Q psy8551 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNISD---NAFRGLSGLRSLVLT 219 (581)
Q Consensus 144 L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~~~l~~~~~---~~l~~~~~L~~L~l~ 219 (581)
|++++|.++...+..+..+++|++|++++|.+++++. ..+..+++|+.|++++|.++..++ ..+..+++|++|+++
T Consensus 76 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 76 LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp EEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred EECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 8888888887555456668888888888888776543 456677777777777777766654 456666677777777
Q ss_pred CCcCCccC
Q psy8551 220 DNRLQSIP 227 (581)
Q Consensus 220 ~n~l~~~~ 227 (581)
+|.+..++
T Consensus 156 ~n~~~~~~ 163 (168)
T 2ell_A 156 DREDQEAP 163 (168)
T ss_dssp ETTSCBCC
T ss_pred CCChhhcc
Confidence 66666555
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=7e-14 Score=122.85 Aligned_cols=136 Identities=21% Similarity=0.299 Sum_probs=115.6
Q ss_pred ccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCC
Q psy8551 400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN 479 (581)
Q Consensus 400 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 479 (581)
.+..+++|+.|++++|.++.++ ......++|++|++++|.+++. ..+..+++|++|++++ +.++.+++..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNN-NRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCS-SCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCC-CcccccCcchhhcCCC
Confidence 3556889999999999999774 3333345999999999999987 5688999999999998 5778887777789999
Q ss_pred CCeeeCCCCCCceeecC-CccCCCCCccEEEcCCCcceeeccc----cccCCcceEEecCCCcccc
Q psy8551 480 LETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTSFSES----MLAWPELRTIDIAENPIEC 540 (581)
Q Consensus 480 L~~L~l~~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~~----~~~~~~L~~L~l~~np~~c 540 (581)
|++|++++| .++.++. ..+..+++|++|++++|.++.+|.. +..+++|+.|++++|+..-
T Consensus 90 L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999 7787764 3688999999999999999988875 7889999999999998753
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=6.2e-14 Score=123.18 Aligned_cols=90 Identities=22% Similarity=0.238 Sum_probs=40.8
Q ss_pred cCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccC-CcCCCCCCCcEEEcCCCCccccCcc---ccCCC
Q psy8551 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNISDN---AFRGL 210 (581)
Q Consensus 135 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~~~l~~~~~~---~l~~~ 210 (581)
+..+++|+.|++++|.++.++...+..+++|++|++++|.++.++. ..+..+++|+.|++++|.++..+.. .+..+
T Consensus 60 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l 139 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV 139 (176)
T ss_dssp CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC
T ss_pred cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHC
Confidence 3334444444444444444443333444444444444444443332 1344445555555555554443321 24445
Q ss_pred CCCcEEECCCCcCC
Q psy8551 211 SGLRSLVLTDNRLQ 224 (581)
Q Consensus 211 ~~L~~L~l~~n~l~ 224 (581)
++|+.|++++|...
T Consensus 140 ~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 140 PQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCSEETTEECCHH
T ss_pred CccceeCCCcCCHH
Confidence 55555555555443
No 144
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=1.8e-13 Score=116.58 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=106.2
Q ss_pred CCCCCcEEeCCCCcCc--ccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCc
Q psy8551 137 GLTALRILYLDDNQLR--SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLR 214 (581)
Q Consensus 137 ~~~~L~~L~l~~~~i~--~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 214 (581)
..++|+.|++++|.++ .++. .+..+++|++|++++|.++++ ..+..+++|+.|++++|.++...+..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 3478999999999998 5554 678899999999999999887 5688999999999999999886666677789999
Q ss_pred EEECCCCcCCccC-ccccCCCCCCCEEECCCCcccccCC---cccCCCcccceeeec
Q psy8551 215 SLVLTDNRLQSIP-TKQLSKLTRLEELEIGQNGFSMLEA---GCFKGLSYLKRLEIT 267 (581)
Q Consensus 215 ~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 267 (581)
+|++++|++++++ +..+..+++|++|++++|.++..+. ..+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999998864 2568889999999999999887766 456777777777654
No 145
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=4.7e-15 Score=154.48 Aligned_cols=121 Identities=25% Similarity=0.322 Sum_probs=92.2
Q ss_pred CCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeC
Q psy8551 406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTL 485 (581)
Q Consensus 406 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l 485 (581)
.|+.|++++|.+++++. +..+++|+.|++++|.++.+ |..+..+++|+.|++++ +.++.++ .+.++++|++|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~-N~l~~lp--~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASD-NALENVD--GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCS-SCCCCCG--GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCccccccc-chhhhcCCCCCEEECCC-CCCCCCc--ccCCCCCCcEEEC
Confidence 48889999998888763 88888899999998888854 45678888888888887 4555553 6778888888888
Q ss_pred CCCCCceeec-CCccCCCCCccEEEcCCCcceeeccccc----cCCcceEEec
Q psy8551 486 NKNPKLKIIE-EDALVGLPNLYHLNLKENAFTSFSESML----AWPELRTIDI 533 (581)
Q Consensus 486 ~~~~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~l~~~~~----~~~~L~~L~l 533 (581)
++| .+..++ +..+..+++|+.|++++|.++++|+... .+++|+.|++
T Consensus 516 s~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888 666664 5667888888888888888887665432 3677777754
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=9.5e-14 Score=149.34 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=59.9
Q ss_pred cCccEEEcccCCcccccccccCCCcccEEE-----cCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccc
Q psy8551 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVD-----LSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRV 119 (581)
Q Consensus 45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~-----ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 119 (581)
++++.|+|.++.+...+..+....+|..+. ++.|.+. ++...+..+++|++|+|++|.+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l--------------- 236 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQI--------------- 236 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCC---------------
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCC---------------
Confidence 567888888887776654333332222222 2223222 3345566677777777777653
Q ss_pred cccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCc
Q psy8551 120 EIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 199 (581)
Q Consensus 120 ~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l 199 (581)
..++.. +.++++|++|+|++|.++.++. .+..+++|++|+|++|.++.++ ..+.++++|+.|+|++|.+
T Consensus 237 --------~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 237 --------FNISAN-IFKYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSLP-AELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp --------SCCCGG-GGGCCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSCC-SSGGGGTTCSEEECCSSCC
T ss_pred --------CCCChh-hcCCCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCccC-hhhcCCCCCCEEECCCCCC
Confidence 122222 2245556666666666554443 4555556666666666555442 2355555555555555555
Q ss_pred cccCccccCCCCCCcEEECCCCcCCccC
Q psy8551 200 TNISDNAFRGLSGLRSLVLTDNRLQSIP 227 (581)
Q Consensus 200 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 227 (581)
+.++. .|..+++|+.|+|++|.+++.+
T Consensus 306 ~~lp~-~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 306 TTLPW-EFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp CCCCS-STTSCTTCCCEECTTSCCCSHH
T ss_pred CccCh-hhhcCCCccEEeCCCCccCCCC
Confidence 54433 2555555555555555555443
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=7.8e-14 Score=150.03 Aligned_cols=165 Identities=24% Similarity=0.163 Sum_probs=109.4
Q ss_pred cEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccc
Q psy8551 48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRI 127 (581)
Q Consensus 48 ~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l 127 (581)
..+++..+.+...+..+..+++|+.|+|++|.+..++...+ .+++|++|+|++|.+
T Consensus 204 ~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l----------------------- 259 (727)
T 4b8c_D 204 DEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSL----------------------- 259 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCC-----------------------
T ss_pred cCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcC-----------------------
Confidence 33344444444445678899999999999999998886544 899999999999864
Q ss_pred cccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCcccc
Q psy8551 128 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAF 207 (581)
Q Consensus 128 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l 207 (581)
+.+ +..|+++++|+.|+|++|.++.+|. .+..+++|++|+|++|.++.++. .|..+++|+.|+|++|.+++..+..+
T Consensus 260 ~~l-p~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 260 TEL-PAEIKNLSNLRVLDLSHNRLTSLPA-ELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp SCC-CGGGGGGTTCCEEECTTSCCSSCCS-SGGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred ccc-ChhhhCCCCCCEEeCcCCcCCccCh-hhcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCCChHHH
Confidence 333 3457889999999999999998866 78899999999999999987766 49999999999999999987766555
Q ss_pred CCCC-CCcEEECCCCcCCccCccccCCCCCCCEEECCCC
Q psy8551 208 RGLS-GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245 (581)
Q Consensus 208 ~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~ 245 (581)
.... .+..+++++|.++...+ ..|+.|+++.|
T Consensus 337 ~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 337 TEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred hhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 3321 11235667776664432 24555666555
No 148
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.36 E-value=1.2e-12 Score=107.25 Aligned_cols=95 Identities=25% Similarity=0.426 Sum_probs=79.0
Q ss_pred eeeCCCCCCce--eecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCchhHHHHHHhhcC---
Q psy8551 482 TLTLNKNPKLK--IIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCNILWLREMLVRRN--- 555 (581)
Q Consensus 482 ~L~l~~~~~l~--~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~~--- 555 (581)
.++.+++ .++ .+|.. + -++|++|+|++|+|+.++.. +..+++|++|+|++|||.|+|+++||.+|++...
T Consensus 12 ~v~Cs~~-~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~ 87 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTA-F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA 87 (130)
T ss_dssp EEECCSS-CCCTTTSCSC-C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSG
T ss_pred EEEeCCC-CCccccCCCC-C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccc
Confidence 5666666 666 66532 1 24799999999999999865 5678999999999999999999999999998753
Q ss_pred -CCceeeCCCcccccccccccCcccc
Q psy8551 556 -TSAVFCNSPAPLKYKSLISLSAEDL 580 (581)
Q Consensus 556 -~~~~~c~~~~~~~~~~~~~~~~~~~ 580 (581)
...++|..|..++|+++.+++++++
T Consensus 88 ~~~~~~C~~P~~l~g~~l~~l~~~~l 113 (130)
T 3rfe_A 88 PYRDLRCVAPPALRGRLLPYLAEDEL 113 (130)
T ss_dssp GGTTCBCCBSTTTTTCBGGGCCHHHH
T ss_pred cccCcEeCcChHHcCCCcccCCHHHh
Confidence 2457899999999999999998875
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=1.1e-11 Score=121.89 Aligned_cols=111 Identities=16% Similarity=0.311 Sum_probs=82.1
Q ss_pred CCCCC-CCCCCccCCCccccccC-CCccCCCCCC--cCccEEEccc-CCcccccc-cccCCCcccEEEcCCCceeecCCC
Q psy8551 13 CMNPY-EPSRFSTRDPSCNLQEA-NLDVIPSHSN--PSIQRLVLST-NRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIG 86 (581)
Q Consensus 13 ~~~~c-~~~~~~~~~~~c~~~~~-~l~~ip~~~~--~~l~~L~L~~-~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~ 86 (581)
||..| .|.. ..+.| .+. +++.||. ++ ++|++|+|++ |.++.++. .|.++++|++|+|++|+|+.+++.
T Consensus 1 cp~~c~~C~~---~~v~~--~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 74 (347)
T 2ifg_A 1 CPDACCPHGS---SGLRC--TRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74 (347)
T ss_dssp CCSSSCCSSS---SCEEC--CSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred CCCcCccccC---CEEEc--CCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH
Confidence 89999 9976 57899 887 8888888 65 4588888885 88887774 677888888888888888888777
Q ss_pred CCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcc
Q psy8551 87 GFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRS 153 (581)
Q Consensus 87 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~ 153 (581)
.|.++++|++|+|++|. ++.+++..|..++ |+.|++.+|.+..
T Consensus 75 ~~~~l~~L~~L~l~~N~-----------------------l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 75 AFHFTPRLSRLNLSFNA-----------------------LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp GGGSCSCCCEEECCSSC-----------------------CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred HhcCCcCCCEEeCCCCc-----------------------cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 77778888888887775 3334444444444 7777777776653
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=8e-14 Score=125.07 Aligned_cols=129 Identities=23% Similarity=0.246 Sum_probs=87.6
Q ss_pred CccEEEcccC--CcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccC
Q psy8551 46 SIQRLVLSTN--RIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFG 123 (581)
Q Consensus 46 ~l~~L~L~~~--~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~ 123 (581)
.++...+.+. .++.+|..+..+++|++|++++|.++.++ .+..+++|++|++++|.+
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l------------------- 82 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLI------------------- 82 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEE-------------------
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCc-------------------
Confidence 5666666654 56667778888889999999988888876 677788888888888753
Q ss_pred cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccC-CcCCCCCCCcEEEcCCCCcccc
Q psy8551 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNI 202 (581)
Q Consensus 124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~~~l~~~ 202 (581)
+.++ ..+..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++. ..+..+++|+.|++++|.++..
T Consensus 83 ----~~l~-~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 83 ----KKIE-NLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp ----CSCS-SHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred ----cccc-chhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 2221 22344577778888777777764 46667777777777777665443 2355666666666666655443
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=5.7e-14 Score=126.04 Aligned_cols=87 Identities=26% Similarity=0.391 Sum_probs=42.7
Q ss_pred cCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc-cccCCCCCC
Q psy8551 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD-NAFRGLSGL 213 (581)
Q Consensus 135 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~-~~l~~~~~L 213 (581)
+..+++|+.|++++|.++.++. .+..+++|++|++++|.+++++ .+..+++|+.|++++|.++.+.. ..+..+++|
T Consensus 66 ~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L 142 (198)
T 1ds9_A 66 LSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142 (198)
T ss_dssp HHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTC
T ss_pred cccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCC
Confidence 4444555555555555554443 3344455555555555555443 24444555555555555444332 234445555
Q ss_pred cEEECCCCcCC
Q psy8551 214 RSLVLTDNRLQ 224 (581)
Q Consensus 214 ~~L~l~~n~l~ 224 (581)
++|++++|.++
T Consensus 143 ~~L~l~~N~l~ 153 (198)
T 1ds9_A 143 EDLLLAGNPLY 153 (198)
T ss_dssp SEEEECSCHHH
T ss_pred CEEEecCCccc
Confidence 55555555443
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.00 E-value=2.7e-11 Score=119.30 Aligned_cols=111 Identities=20% Similarity=0.146 Sum_probs=57.1
Q ss_pred CCcEEeCCCCcCcccCCccc-----ccCccCcEEECCCCcceeccC----CcCCCCCCCcEEEcCCCCccccC----ccc
Q psy8551 140 ALRILYLDDNQLRSVPTPSF-----IYLGMLAELRVGLNVFTTLAD----GAFNGLGRLSALDLRGAGLTNIS----DNA 206 (581)
Q Consensus 140 ~L~~L~l~~~~i~~~~~~~~-----~~~~~L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~L~~~~l~~~~----~~~ 206 (581)
+|+.|++++|.++......+ ...++|++|+|++|.++.... ..+..+++|++|+|++|.++... ...
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 45555555555543322222 123455555555555543211 12244556666666666655432 223
Q ss_pred cCCCCCCcEEECCCCcCCccCc----cccCCCCCCCEEECCCCccccc
Q psy8551 207 FRGLSGLRSLVLTDNRLQSIPT----KQLSKLTRLEELEIGQNGFSML 250 (581)
Q Consensus 207 l~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~~~~~~~ 250 (581)
+...++|++|++++|.++.... ..+...++|++|++++|.++..
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 4445667777777776664221 2233456677777777766543
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.98 E-value=1.4e-11 Score=121.38 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=45.9
Q ss_pred CCCCCcEEeCCCCcCcccCCc----ccccCccCcEEECCCCcceecc----CCcCCCCCCCcEEEcCCCCccccCcc---
Q psy8551 137 GLTALRILYLDDNQLRSVPTP----SFIYLGMLAELRVGLNVFTTLA----DGAFNGLGRLSALDLRGAGLTNISDN--- 205 (581)
Q Consensus 137 ~~~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~~~l~~~~~~--- 205 (581)
..++|++|++++|.++..... .+..+++|++|+|++|.+++.. ...+...++|+.|+|++|.++.....
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 345566666666665542221 2244556666666666655322 12344455666666666665543321
Q ss_pred -ccCCCCCCcEEECCCCcCCc
Q psy8551 206 -AFRGLSGLRSLVLTDNRLQS 225 (581)
Q Consensus 206 -~l~~~~~L~~L~l~~n~l~~ 225 (581)
.+...++|++|++++|.++.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHhCCCCCEEeccCCCCCH
Confidence 22234566666666666553
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.50 E-value=8e-09 Score=88.15 Aligned_cols=85 Identities=11% Similarity=0.129 Sum_probs=39.2
Q ss_pred CCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCC----CCCCeeeCCCCCCceeecCCccCCCCCc
Q psy8551 430 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADN----LNLETLTLNKNPKLKIIEEDALVGLPNL 505 (581)
Q Consensus 430 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~----~~L~~L~l~~~~~l~~~~~~~~~~l~~L 505 (581)
.|++|+++++.++......+..+++|++|++++|..+++.....+..+ ++|++|++++|..+++-....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 344444444444444333344444445555544444444433333332 2455555555544444333334445555
Q ss_pred cEEEcCCCc
Q psy8551 506 YHLNLKENA 514 (581)
Q Consensus 506 ~~L~l~~n~ 514 (581)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555554
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=5.6e-08 Score=94.77 Aligned_cols=135 Identities=19% Similarity=0.182 Sum_probs=77.4
Q ss_pred CCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccc--cCCccccEEeecCCC-------CeeEecCC
Q psy8551 402 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF--KGLSYLKRLEITGAS-------NLTRVRKG 472 (581)
Q Consensus 402 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~--~~~~~L~~L~l~~~~-------~l~~~~~~ 472 (581)
..+|+|+.|.+.++.-..+++ + .+++|++|++..+.+.......+ ..+++|++|+|+.+. .+..+..
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~- 244 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP- 244 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-
T ss_pred hcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-
Confidence 446677777776652112221 2 26677777776666554332223 256777777764211 1111111
Q ss_pred cc--CCCCCCCeeeCCCCCCceeecCCc--cCCCCCccEEEcCCCccee-----eccccccCCcceEEecCCCcccc
Q psy8551 473 AF--ADNLNLETLTLNKNPKLKIIEEDA--LVGLPNLYHLNLKENAFTS-----FSESMLAWPELRTIDIAENPIEC 540 (581)
Q Consensus 473 ~~--~~~~~L~~L~l~~~~~l~~~~~~~--~~~l~~L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~l~~np~~c 540 (581)
.+ ..+++|++|++.+|.......... ...+++|++|+|+.|.++. ++..+..+++|+.|++++|+++-
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 12 246788888888883322211111 1357788889988888874 44555667888888888887753
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.45 E-value=1.3e-07 Score=77.19 Aligned_cols=65 Identities=18% Similarity=0.352 Sum_probs=55.7
Q ss_pred cCCCCCCCCCCccCCCccccccCCCc--cCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCcee
Q psy8551 12 KCMNPYEPSRFSTRDPSCNLQEANLD--VIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWL 81 (581)
Q Consensus 12 ~~~~~c~~~~~~~~~~~c~~~~~~l~--~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~ 81 (581)
+||..|.|.. ..+.| ++.+++ .||..+++++++|+|++|+|+.++. .|..+++|++|+|++|.+.
T Consensus 1 ~CP~~C~C~~---~~v~C--s~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 1 PCPAPCSCAG---TLVDC--GRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CCCTTCEEET---TEEEC--CSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CcCCCCEEcC---CEEEe--CCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5999999976 68999 999999 9999999999999999999998876 5677888888888877543
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=2.5e-08 Score=85.06 Aligned_cols=90 Identities=20% Similarity=0.152 Sum_probs=78.1
Q ss_pred CCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCC-cceeeccccccCC----ccccEEeecCCCCeeEecCCccCCCCC
Q psy8551 405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN-GFSMLEAGCFKGL----SYLKRLEITGASNLTRVRKGAFADNLN 479 (581)
Q Consensus 405 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~-~i~~~~~~~~~~~----~~L~~L~l~~~~~l~~~~~~~~~~~~~ 479 (581)
..|+.|+++++.++......+..+++|++|++++| .+++.....+..+ ++|++|++++|..+++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 46999999999998877778899999999999999 4887766666654 589999999999999988778889999
Q ss_pred CCeeeCCCCCCceee
Q psy8551 480 LETLTLNKNPKLKII 494 (581)
Q Consensus 480 L~~L~l~~~~~l~~~ 494 (581)
|++|++++|+.+++.
T Consensus 141 L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEK 155 (176)
T ss_dssp CCEEEEESCTTCCCH
T ss_pred CCEEECCCCCCCCch
Confidence 999999999877764
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=2.1e-07 Score=81.72 Aligned_cols=120 Identities=13% Similarity=0.055 Sum_probs=78.7
Q ss_pred cccCCCCCCCEEEcCCC-cCCccC----hhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCc
Q psy8551 399 NAFRGLSGLRSLVLTDN-RLQSIP----TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGA 473 (581)
Q Consensus 399 ~~~~~~~~L~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 473 (581)
..+...+.|++|++++| .+.... ...+...++|++|+|++|.+.......+. ..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~---------------------~~ 88 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA---------------------EM 88 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH---------------------HH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH---------------------HH
Confidence 34556788888888888 776432 24456677788888888777654322211 11
Q ss_pred cCCCCCCCeeeCCCCCCceeec----CCccCCCCCccEEEc--CCCccee-----eccccccCCcceEEecCCCcccc
Q psy8551 474 FADNLNLETLTLNKNPKLKIIE----EDALVGLPNLYHLNL--KENAFTS-----FSESMLAWPELRTIDIAENPIEC 540 (581)
Q Consensus 474 ~~~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~L~~L~l--~~n~l~~-----l~~~~~~~~~L~~L~l~~np~~c 540 (581)
+...++|++|++++| .++... ...+...++|++|+| ++|.++. +.+.+...++|++|++++|.+..
T Consensus 89 L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 89 LKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 223456677777777 444421 234666788999999 7788873 55666778899999999998854
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.24 E-value=4.2e-07 Score=88.55 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=42.1
Q ss_pred CCCCCcEEEcCCCCccccCcccc---CCCCCCcEEECCCCcCCccCc----cccCCCCCCCEEECCCCccccc
Q psy8551 185 GLGRLSALDLRGAGLTNISDNAF---RGLSGLRSLVLTDNRLQSIPT----KQLSKLTRLEELEIGQNGFSML 250 (581)
Q Consensus 185 ~l~~L~~L~L~~~~l~~~~~~~l---~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~~~~~~~ 250 (581)
.+++|+.|++.+|.++......+ ..+++|++|+++.|.++.... ..+..+++|+.|+++.|.++..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 46788888887777654222122 246778888888887775211 2234567888888888876643
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.04 E-value=6.1e-07 Score=78.70 Aligned_cols=117 Identities=10% Similarity=0.026 Sum_probs=81.9
Q ss_pred hhhcCCCCCCcEEeCCCC-cCcccCC----cccccCccCcEEECCCCcceecc----CCcCCCCCCCcEEEcCCCCcccc
Q psy8551 132 QACFEGLTALRILYLDDN-QLRSVPT----PSFIYLGMLAELRVGLNVFTTLA----DGAFNGLGRLSALDLRGAGLTNI 202 (581)
Q Consensus 132 ~~~l~~~~~L~~L~l~~~-~i~~~~~----~~~~~~~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~~~l~~~ 202 (581)
...+...+.|++|++++| .+..... ..+...++|++|+|++|.+.... ...+...+.|++|+|++|.++..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 455778899999999998 8875322 23455688999999999886432 22345567888899988888754
Q ss_pred C----ccccCCCCCCcEEEC--CCCcCCccC----ccccCCCCCCCEEECCCCccc
Q psy8551 203 S----DNAFRGLSGLRSLVL--TDNRLQSIP----TKQLSKLTRLEELEIGQNGFS 248 (581)
Q Consensus 203 ~----~~~l~~~~~L~~L~l--~~n~l~~~~----~~~~~~l~~L~~L~l~~~~~~ 248 (581)
. ...+...++|++|++ ++|.+.... ...+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3 234556778888888 778887422 134555678888888888765
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.69 E-value=8.5e-06 Score=75.08 Aligned_cols=65 Identities=25% Similarity=0.289 Sum_probs=41.1
Q ss_pred CCCCCCcEEeCCCCcCcccCC--cccccCccCcEEECCCCcceeccC-CcCCCCCCCcEEEcCCCCccc
Q psy8551 136 EGLTALRILYLDDNQLRSVPT--PSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTN 201 (581)
Q Consensus 136 ~~~~~L~~L~l~~~~i~~~~~--~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~~~l~~ 201 (581)
.++++|+.|+|++|.++++.. ..+..+++|+.|+|++|.+.+... ..+..+ +|+.|++.+|.++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 456788888888888877542 245567778888888877765521 122222 66666666666553
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.57 E-value=7.2e-06 Score=75.57 Aligned_cols=63 Identities=27% Similarity=0.373 Sum_probs=28.9
Q ss_pred CCCCcEEEcCCCCccccCc--cccCCCCCCcEEECCCCcCCccC-ccccCCCCCCCEEECCCCcccc
Q psy8551 186 LGRLSALDLRGAGLTNISD--NAFRGLSGLRSLVLTDNRLQSIP-TKQLSKLTRLEELEIGQNGFSM 249 (581)
Q Consensus 186 l~~L~~L~L~~~~l~~~~~--~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~~~~ 249 (581)
+++|+.|+|++|.++.+.. ..+..+++|+.|+|++|+++++. ...+..+ +|++|++++|.+..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 3444555555554444321 22334555555555555555441 1112222 55666666665543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.79 E-value=0.0012 Score=57.42 Aligned_cols=42 Identities=14% Similarity=0.061 Sum_probs=21.3
Q ss_pred cCCCCCCcEEeCCCCcCcccCCcc----cccCccCcEEECCCCcce
Q psy8551 135 FEGLTALRILYLDDNQLRSVPTPS----FIYLGMLAELRVGLNVFT 176 (581)
Q Consensus 135 l~~~~~L~~L~l~~~~i~~~~~~~----~~~~~~L~~L~L~~n~~~ 176 (581)
+..-..|+.|+|++|.+.+..... +..-+.|++|+|++|.|+
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 444556666666666655432222 223345555555555554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.67 E-value=0.00089 Score=58.14 Aligned_cols=63 Identities=19% Similarity=0.146 Sum_probs=28.6
Q ss_pred CCCCCCcEEeCCCCcCcccCCc----ccccCccCcEEECCCC---cceec----cCCcCCCCCCCcEEEcCCCC
Q psy8551 136 EGLTALRILYLDDNQLRSVPTP----SFIYLGMLAELRVGLN---VFTTL----ADGAFNGLGRLSALDLRGAG 198 (581)
Q Consensus 136 ~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~L~~n---~~~~~----~~~~l~~l~~L~~L~L~~~~ 198 (581)
..-+.|++|+|++|.|...... ++..-+.|++|+|+++ .+... ...++...+.|+.|+++.+.
T Consensus 95 ~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 95 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3345556666665555532221 2233344666666543 22211 11233444566666665543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.81 E-value=0.34 Score=36.62 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=37.4
Q ss_pred CCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCC
Q psy8551 390 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439 (581)
Q Consensus 390 ~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~ 439 (581)
+..++.|....|.+|.+|+++.|.. .++.+....|..|.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 4456778888888888888888876 466677677888888888887654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=87.47 E-value=1.6 Score=32.85 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=20.8
Q ss_pred ccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCC
Q psy8551 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 244 (581)
Q Consensus 199 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 244 (581)
++.+....|.+|.+|+.+.+..+ ++.+...+|..|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344444444444444444442 4444444455555555555443
Done!