RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8551
(581 letters)
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 50.2 bits (121), Expect = 2e-08
Identities = 24/58 (41%), Positives = 31/58 (53%)
Query: 188 RLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L +LDL LT I D AF+GL L+ L L+ N L SI + S L L L++ N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Score = 47.5 bits (114), Expect = 2e-07
Identities = 30/59 (50%), Positives = 34/59 (57%)
Query: 165 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRL 223
L L + N T + DGAF GL L LDL G LT+IS AF GL LRSL L+ N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 45.2 bits (108), Expect = 1e-06
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 261 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319
LK L+++ + LT + GAF NL+ L L+ N L +I A GLP+L L+L N
Sbjct: 2 LKSLDLSN-NRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGN 58
Score = 44.5 bits (106), Expect = 3e-06
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 455 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN 513
LK L+++ + LT + GAF NL+ L L+ N L I +A GLP+L L+L N
Sbjct: 2 LKSLDLSN-NRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGN 58
Score = 44.1 bits (105), Expect = 4e-06
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439
LT I D AF+GL L+ L L+ N L SI + S L L L++ N
Sbjct: 12 LTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Score = 42.9 bits (102), Expect = 1e-05
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 212 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 268
L+SL L++NRL IP L L+ L++ N + + F GL L+ L+++G
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57
Score = 42.9 bits (102), Expect = 1e-05
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 462
L+SL L++NRL IP L L+ L++ N + + F GL L+ L+++G
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57
Score = 39.8 bits (94), Expect = 1e-04
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENP 343
NL++L L+ N +L I +GA GLPNL L+L N TS S + P LR++D++ N
Sbjct: 1 NLKSLDLSNN-RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 344 I 344
+
Sbjct: 60 L 60
Score = 38.7 bits (91), Expect = 3e-04
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 479 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENP 537
NL++L L+ N +L +I + A GLPNL L+L N TS S + P LR++D++ N
Sbjct: 1 NLKSLDLSNN-RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 538 I 538
+
Sbjct: 60 L 60
Score = 38.7 bits (91), Expect = 4e-04
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 295
L+ L++ N +++ G FKGL LK L+++G +NLT + AF+ +L +L L+ N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSG-NNLTSISPEAFSGLPSLRSLDLSGNN 59
Score = 38.7 bits (91), Expect = 4e-04
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 430 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 489
L+ L++ N +++ G FKGL LK L+++G +NLT + AF+ +L +L L+ N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSG-NNLTSISPEAFSGLPSLRSLDLSGNN 59
Score = 36.4 bits (85), Expect = 0.002
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 168
NR++ I F+GL L++L L N L S+ +F L L L
Sbjct: 6 DLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSL 53
Score = 33.7 bits (78), Expect = 0.018
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 23/83 (27%)
Query: 69 SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRIS 128
+L+ +DLS+ +IP G F+ L L L+ N ++
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNN-----------------------LT 37
Query: 129 RIDQACFEGLTALRILYLDDNQL 151
I F GL +LR L L N L
Sbjct: 38 SISPEAFSGLPSLRSLDLSGNNL 60
Score = 28.7 bits (65), Expect = 1.3
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRL 417
LT+IS AF GL LRSL L+ N L
Sbjct: 36 LTSISPEAFSGLPSLRSLDLSGNNL 60
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 50.2 bits (121), Expect = 1e-07
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 31/143 (21%)
Query: 200 TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLS 259
T+I D AF S L S+ + + + SI F G +
Sbjct: 1 TSIGDYAFYNCS-LTSITIPSS-VTSI------------------------GEYAFSGCT 34
Query: 260 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319
LK + + S+LT + AF + +L ++T+ + L +I E A +L + + N
Sbjct: 35 SLKSITLP--SSLTSIGSYAFYNCSSLTSITIPSS--LTSIGEYAFSNCSSLTSITIPSN 90
Query: 320 AFTSFSESMLAWPELRTIDIAEN 342
T+ + L++I I +
Sbjct: 91 -LTTIGSYAFSNCSLKSITIPSS 112
Score = 50.2 bits (121), Expect = 1e-07
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT 235
T++ + AF+G L ++ L + LT+I AF S L S+ + + L SI S +
Sbjct: 23 TSIGEYAFSGCTSLKSITL-PSSLTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFSNCS 80
Query: 236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE 287
L + I + + + + F LK IT S++T + AF++ +L+
Sbjct: 81 SLTSITI-PSNLTTIGSYAFSN-CSLK--SITIPSSVTTIGDYAFSNCSSLK 128
Score = 49.8 bits (120), Expect = 2e-07
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Query: 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT 235
T++ D AF L+++ + + +T+I + AF G + L+S+ L + L SI + +
Sbjct: 1 TSIGDYAFYNCS-LTSITI-PSSVTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCS 57
Query: 236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 295
L + I + + + F S L + I SNLT + AF+ N +L+++T+ +
Sbjct: 58 SLTSITIPSS-LTSIGEYAFSNCSSLTSITIP--SNLTTIGSYAFS-NCSLKSITIPSS- 112
Query: 296 KLKTIEEGALVGLPNL 311
+ TI + A +L
Sbjct: 113 -VTTIGDYAFSNCSSL 127
Score = 49.1 bits (118), Expect = 3e-07
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
+T+I + AF G + L+S+ L + L SI + + L + I + + + F
Sbjct: 21 SVTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFSN 78
Query: 452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL 505
S L + I SNLT + AF+ N +L+++T+ + + I + A +L
Sbjct: 79 CSSLTSITIP--SNLTTIGSYAFS-NCSLKSITIPSS--VTTIGDYAFSNCSSL 127
Score = 48.3 bits (116), Expect = 7e-07
Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 31/143 (21%)
Query: 394 TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLS 453
T+I D AF S L S+ + + + SI F G +
Sbjct: 1 TSIGDYAFYNCS-LTSITIPSS-VTSI------------------------GEYAFSGCT 34
Query: 454 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN 513
LK + + S+LT + AF + +L ++T+ + L I E A +L + + N
Sbjct: 35 SLKSITLP--SSLTSIGSYAFYNCSSLTSITIPSS--LTSIGEYAFSNCSSLTSITIPSN 90
Query: 514 AFTSFSESMLAWPELRTIDIAEN 536
T+ + L++I I +
Sbjct: 91 -LTTIGSYAFSNCSLKSITIPSS 112
Score = 45.6 bits (109), Expect = 6e-06
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
LT+I AF S L S+ + + L SI S + L + I + + + + F
Sbjct: 44 SLTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFSNCSSLTSITI-PSNLTTIGSYAFSN 101
Query: 452 LSYLKRLEITGASNLTRVRKGAFADNLNLE 481
LK IT S++T + AF++ +L+
Sbjct: 102 -CSLK--SITIPSSVTTIGDYAFSNCSSLK 128
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 48.1 bits (115), Expect = 6e-06
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 24/152 (15%)
Query: 213 LRSLVLTDNRLQSIPTKQLSKL----TRLEELEIGQNGFSMLEAGC---FKGLSYLKRLE 265
L LVL NRL+ + L+K L+EL + NG +AG +GL LE
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI--GDAGIRALAEGLKANCNLE 196
Query: 266 ITGASNLTRVRKGA------FADNLNLETLTLNKNP----KLKTIEEGALVGLPNLYHLN 315
+ +N +GA A +LE L L N + L +L L+
Sbjct: 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256
Query: 316 LKEN-----AFTSFSESMLAWPELRTIDIAEN 342
L N +E + L +D+ N
Sbjct: 257 LSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288
Score = 45.4 bits (108), Expect = 5e-05
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 34/147 (23%)
Query: 407 LRSLVLTDNRLQSIPTKQLSKL----TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 462
L LVL NRL+ + L+K L+EL + NG G+ L
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD------AGIRALAE----- 187
Query: 463 ASNLTRVRKGAFADNLNLETLTLNKN---PKLKIIEEDALVGLPNLYHLNLKENAFTS-- 517
N NLE L LN N + + L L +L LNL +N T
Sbjct: 188 ----------GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237
Query: 518 ---FSESMLAW-PELRTIDIAENPIEC 540
+ ++L+ L T+ ++ N I
Sbjct: 238 AAALASALLSPNISLLTLSLSCNDITD 264
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one
LDL-receptor class A domain, one C-type lectin family
domain, and 16-18 putative TMSs in positions between
residues 2200 and 4100. Polycystin-L has been shown to
be a cation (Na+, K+ and Ca2+) channel that is activated
by Ca2+. Two members of the PCC family (polycystin 1 and
2) are mutated in autosomal dominant polycystic kidney
disease, and polycystin-L is deleted in mice with renal
and retinal defects. Note: this model is restricted to
the amino half for technical reasons.
Length = 2740
Score = 45.8 bits (108), Expect = 7e-05
Identities = 34/124 (27%), Positives = 47/124 (37%), Gaps = 28/124 (22%)
Query: 294 NPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNIL-- 351
N K+ TIEEG L NL ID++ NP EC C +
Sbjct: 4 NNKISTIEEGICANLCNLSE-----------------------IDLSGNPFECDCGLARL 40
Query: 352 --WLREMLVR-RNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLR 408
W E V+ R A C P L + L+ + D GC + + DN+ G +
Sbjct: 41 PRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGCDEEYVACLKDNSSGGGAARS 100
Query: 409 SLVL 412
LV+
Sbjct: 101 ELVI 104
Score = 40.1 bits (93), Expect = 0.004
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 528 LRTIDIAENPIECGCNIL----WLREMLVR-RNTSAVFCNSPAPLKYKSLISLSAEDLG 581
L ID++ NP EC C + W E V+ R A C P L + L+ + D G
Sbjct: 21 LSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSG 79
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 40.6 bits (95), Expect = 0.002
Identities = 103/432 (23%), Positives = 172/432 (39%), Gaps = 41/432 (9%)
Query: 125 NRIS-RIDQACFEGLTALRILYLDDNQLR-SVPTPSFIYLGMLAELRVGLNVFTTLADGA 182
N++S I F ++LR L L +N S+P S + L L + N+ +
Sbjct: 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS---IPNLETLDLSNNMLSGEIPND 159
Query: 183 FNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 242
L LDL G L N+ L+ L L L N+L ++L ++ L+ + +
Sbjct: 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219
Query: 243 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEE 302
G N S GL+ L L++ +NLT + + NL+ L L +N KL
Sbjct: 220 GYNNLSGEIPYEIGGLTSLNHLDLV-YNNLTGPIPSSLGNLKNLQYLFLYQN-KLSGPIP 277
Query: 303 GALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNT 362
++ L L L+L +N+ + ++ +L+ ++ IL L
Sbjct: 278 PSIFSLQKLISLDLSDNSLSGEIPELVI--QLQNLE-----------ILHLFSNNFTGKI 324
Query: 363 SAVFCNSPAPLKYKSLIS--LSAE---DLGCAGAGLT--NISDNAFRGL-------SG-L 407
+ P L+ L S S E +LG LT ++S N G SG L
Sbjct: 325 PVALTSLPR-LQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382
Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 467
L+L N L+ K L L + + N FS F L + L+I+ +NL
Sbjct: 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS-NNNLQ 441
Query: 468 RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLAWP 526
D +L+ L+L +N + + G L +L+L N F+ + + +
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLS 499
Query: 527 ELRTIDIAENPI 538
EL + ++EN +
Sbjct: 500 ELMQLKLSENKL 511
Score = 34.8 bits (80), Expect = 0.13
Identities = 62/247 (25%), Positives = 93/247 (37%), Gaps = 30/247 (12%)
Query: 124 QNRIS-RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA 182
QN++S I + F L L L L DN L I L L L + N FT A
Sbjct: 269 QNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327
Query: 183 FNGLGRLSALDLRGAGLT----------------NISDNAFRGL-------SG-LRSLVL 218
L RL L L + ++S N G SG L L+L
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387
Query: 219 TDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKG 278
N L+ K L L + + N FS F L + L+I+ +NL
Sbjct: 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS-NNNLQGRINS 446
Query: 279 AFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT-SFSESMLAWPELRTI 337
D +L+ L+L +N + + G L +L+L N F+ + + + EL +
Sbjct: 447 RKWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504
Query: 338 DIAENPI 344
++EN +
Sbjct: 505 KLSENKL 511
Score = 32.1 bits (73), Expect = 0.90
Identities = 57/231 (24%), Positives = 94/231 (40%), Gaps = 28/231 (12%)
Query: 286 LETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 345
++T+ L+ N I + +L +LNL N FT S + P L T+D++ N +
Sbjct: 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPRGSIPNLETLDLSNNML- 152
Query: 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLS 405
+ P S SL DLG G L N+ L+
Sbjct: 153 ----------------------SGEIPNDIGSFSSLKVLDLG--GNVLVGKIPNSLTNLT 188
Query: 406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN 465
L L L N+L ++L ++ L+ + +G N S GL+ L L++ +N
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV-YNN 247
Query: 466 LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT 516
LT + + NL+ L L +N KL ++ L L L+L +N+ +
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDLSDNSLS 297
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 39.6 bits (92), Expect = 0.003
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+T+I S L+ L L+DN+++S+P+ L L L+ L++ N S L L
Sbjct: 128 ITDIPPLIGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFNDLSDLPKLLSN-L 185
Query: 453 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 512
S L L+++G N LE L L+ N ++++ +L L NL L L
Sbjct: 186 SNLNNLDLSG--NKISDLPPEIELLSALEELDLSNNSIIELL--SSLSNLKNLSGLELSN 241
Query: 513 NAFTSFSESMLAWPELRTIDIAENPIE 539
N ES+ L T+D++ N I
Sbjct: 242 NKLEDLPESIGNLSNLETLDLSNNQIS 268
Score = 36.1 bits (83), Expect = 0.040
Identities = 56/262 (21%), Positives = 89/262 (33%), Gaps = 34/262 (12%)
Query: 35 NLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKL 94
++ + +++ L LS N+I+++ S + +L+++DLS +P L
Sbjct: 130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSN-L 188
Query: 95 VELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSV 154
L L+ NK ++S N I + L L L L +N+L +
Sbjct: 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS-SLSNLKNLSGLELSNNKLEDL 247
Query: 155 PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLR 214
P L L LDL +++IS + L+ LR
Sbjct: 248 PES-------------------------IGNLSNLETLDLSNNQISSIS--SLGSLTNLR 280
Query: 215 SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTR 274
L L+ N L + L LE L L+A K S L I SN
Sbjct: 281 ELDLSGNSLSNALPLIALLLLLLELLLNLL---LTLKALELKLNSILLNNNIL--SNGET 335
Query: 275 VRKGAFADNLNLETLTLNKNPK 296
A + +L L N
Sbjct: 336 SSPEALSILESLNNLWTLDNAL 357
Score = 29.6 bits (66), Expect = 5.0
Identities = 50/240 (20%), Positives = 85/240 (35%), Gaps = 21/240 (8%)
Query: 271 NLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA 330
N+T + NL+ L L+ N K++++ LPNL +L+L N + + +
Sbjct: 127 NITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLR-NLPNLKNLDLSFNDLSDLPKLLSN 184
Query: 331 WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAG 390
L +D++ N I ++ E+L + NS L + L +
Sbjct: 185 LSNLNNLDLSGNKIS---DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN 241
Query: 391 AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK 450
L ++ ++ LS L +L L++N++ SI + L LT L EL
Sbjct: 242 NKLEDLPES-IGNLSNLETLDLSNNQISSISS--LGSLTNLREL-------------DLS 285
Query: 451 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 510
G S L + L L L LN I + P +
Sbjct: 286 GNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILE 345
>gnl|CDD|214507 smart00082, LRRCT, Leucine rich repeat C-terminal domain.
Length = 51
Score = 34.3 bits (79), Expect = 0.008
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 342 NPIECGCNILWLREMLVRR----NTSAVFCNSPAPLKYKSLISLSAEDLGC 388
NP C C + WL L + + C SP+ L+ L+ L + C
Sbjct: 1 NPFICDCELRWLLRWLQANEHLQDPVDLRCASPSSLR-GPLLELLHSEFKC 50
Score = 30.1 bits (68), Expect = 0.26
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 536 NPIECGCNILWLREMLVRR----NTSAVFCNSPAPLK 568
NP C C + WL L + + C SP+ L+
Sbjct: 1 NPFICDCELRWLLRWLQANEHLQDPVDLRCASPSSLR 37
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 35.3 bits (81), Expect = 0.078
Identities = 56/237 (23%), Positives = 86/237 (36%), Gaps = 42/237 (17%)
Query: 323 SFSESMLAWPELRTIDIAENPI-----ECGCNILWLREMLVRRNTSAVFCNSPAPLKYKS 377
E + EL +D++ N I E CN++ L N S F Y +
Sbjct: 21 GVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSN 80
Query: 378 LISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 437
L+ L L C ++SDNAF + +S T L L++
Sbjct: 81 LVMLLKALLKCPRLQKVDLSDNAF------------GSEFPEELGDLISSSTDLVHLKLN 128
Query: 438 QNGFSMLEAG----CFKGLSYLKRLE--------ITGASNLTRVRKGAFADNL----NLE 481
NG + G L+Y K+ I G + L K A L NL+
Sbjct: 129 NNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188
Query: 482 TLTLNKNP-KLKIIEEDALVGL---PNLYHLNLKENAFTSFSESMLA-----WPELR 529
+ + +N + + + A +GL +L L+L++N FT LA W LR
Sbjct: 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245
Score = 29.5 bits (66), Expect = 4.9
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 16/94 (17%)
Query: 184 NGLG-----RLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTR-- 236
NGLG R+ A +D L ++ NRL++ + + L
Sbjct: 130 NGLGPIAGGRIGKALFHLAYNKKAADKPK-----LEVVICGRNRLENGSKELSAALLESH 184
Query: 237 --LEELEIGQNGF--SMLEAGCFKGLSYLKRLEI 266
L+E++I QNG + F GL Y LE+
Sbjct: 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEV 218
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 30.9 bits (71), Expect = 0.11
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE 326
NLETL L+ N ++ + L LPNL L+L N T S
Sbjct: 2 NLETLDLSNN-QITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 30.9 bits (71), Expect = 0.14
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 479 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE 520
NLETL L+ N +I + L LPNL L+L N T S
Sbjct: 2 NLETLDLSNN---QITDLPPLSNLPNLETLDLSGNKITDLSP 40
Score = 30.5 bits (70), Expect = 0.16
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 252
L +L L++N++ +P LS L LE L++ N + L
Sbjct: 3 LETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSP 40
Score = 30.5 bits (70), Expect = 0.16
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 407 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 446
L +L L++N++ +P LS L LE L++ N + L
Sbjct: 3 LETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSP 40
Score = 26.7 bits (60), Expect = 3.7
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 309 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 345
NL L+L N T + P L T+D++ N I
Sbjct: 1 TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKIT 36
Score = 26.7 bits (60), Expect = 3.7
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 503 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 539
NL L+L N T + P L T+D++ N I
Sbjct: 1 TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKIT 36
Score = 26.3 bits (59), Expect = 6.0
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVP 155
N+I+ + L L L L N++ +
Sbjct: 10 NNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
Score = 25.9 bits (58), Expect = 8.0
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
LDL +T++ L L +L L+ N++ +
Sbjct: 6 LDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLS 39
>gnl|CDD|227348 COG5015, COG5015, Uncharacterized conserved protein [Function
unknown].
Length = 132
Score = 33.2 bits (76), Expect = 0.12
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 253 GCFKGLSYLKRLEITG-ASNLTRVR---KGAFADNLNLETLTLNKNPKLKTI 300
+K + +E G + VR + F +N+ L+ L L P LK I
Sbjct: 48 PYYKQIKKNPEVEFCGMDKDGVMVRLRGRAEFVENIELKKLALEIYPVLKEI 99
Score = 32.5 bits (74), Expect = 0.22
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 447 GCFKGLSYLKRLEITG-ASNLTRVR---KGAFADNLNLETLTLNKNPKLK-IIEED 497
+K + +E G + VR + F +N+ L+ L L P LK I D
Sbjct: 48 PYYKQIKKNPEVEFCGMDKDGVMVRLRGRAEFVENIELKKLALEIYPVLKEIYPTD 103
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 27.7 bits (63), Expect = 1.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 138 LTALRILYLDDNQLRSVP 155
L LR L L +NQL S+P
Sbjct: 1 LPNLRELDLSNNQLSSLP 18
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 27.7 bits (63), Expect = 1.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 138 LTALRILYLDDNQLRSVP 155
L LR L L +NQL S+P
Sbjct: 1 LPNLRELDLSNNQLSSLP 18
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 31.3 bits (71), Expect = 1.6
Identities = 24/87 (27%), Positives = 37/87 (42%)
Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
+ L L GL N L L+S+ L+ N ++ L +T LE L++ N F+
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 249 MLEAGCFKGLSYLKRLEITGASNLTRV 275
L+ L+ L + G S RV
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRV 506
Score = 29.4 bits (66), Expect = 7.0
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 395 NISDNAFRG--------LSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFS 442
N+S N+ RG ++ L L L+ N SIP + L +LT L L + N S
Sbjct: 448 NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILNLNGNSLS 503
>gnl|CDD|227136 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase
component (subunits alpha and beta) [Lipid metabolism].
Length = 526
Score = 30.3 bits (69), Expect = 3.5
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 138 LTAL-RI-LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 191
LTA R+ L LD SF+ LG LA R+G + DG G+G ++
Sbjct: 43 LTARERVELLLDPG--------SFLELGALAGHRMGGDANELPGDGVVTGIGTING 90
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 30.1 bits (67), Expect = 3.9
Identities = 62/239 (25%), Positives = 102/239 (42%), Gaps = 46/239 (19%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
N+ E+ L +P I LV+ N + ++ + P +L+ T+ ++P G
Sbjct: 207 NVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPG--- 263
Query: 90 PQEKLVELQLNHN--KHFPQ--QIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILY 145
L+EL + N H P +C ++ IFG N+++ + L+ L
Sbjct: 264 ----LLELSIFSNPLTHLPALPSGLC------KLWIFG-NQLTSLPVLP----PGLQELS 308
Query: 146 LDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS- 203
+ DNQL S+P PS L +L N T+L +GL LS D + A L +
Sbjct: 309 VSDNQLASLPALPS-----ELCKLWAYNNQLTSLPTLP-SGLQELSVSDNQLASLPTLPS 362
Query: 204 --------DNAFRGL----SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML 250
+N L SGL+ L+++ NRL S+P + L+EL + N + L
Sbjct: 363 ELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP----SELKELMVSGNRLTSL 417
>gnl|CDD|234269 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine
4-aminotransferase. This family of enzymes are
aminotransferases of the pfam01041 family involved in
the biosynthesis of pseudaminic acid. They convert
UDP-4-keto-6-deoxy-N-acetylglucosamine into
UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic
acid has a role in surface polysaccharide in Pseudomonas
as well as in the modification of flagellin in
Campylobacter and Helicobacter species.
Length = 380
Score = 29.6 bits (67), Expect = 4.9
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 238 EELEIGQNGFSMLEAGCFKGLSYLKRLE--ITGASNLTRVRKGAFADNLNLETLTLNKNP 295
E+ E+G N + M + GLS LK+L+ + + D LT+
Sbjct: 232 EQQELGFN-YRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGS 290
Query: 296 K 296
K
Sbjct: 291 K 291
Score = 29.6 bits (67), Expect = 4.9
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLE--ITGASNLTRVRKGAFADNLNLETLTLNKNP 489
E+ E+G N + M + GLS LK+L+ + + D LT+
Sbjct: 232 EQQELGFN-YRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGS 290
Query: 490 K 490
K
Sbjct: 291 K 291
>gnl|CDD|219070 pfam06516, NUP, Purine nucleoside permease (NUP). This family
consists of several purine nucleoside permease from
both bacteria and fungi.
Length = 315
Score = 29.1 bits (66), Expect = 5.9
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 74 DLSHTTWLIIPIGGFEPQ 91
DL+ T +L+ I G +P+
Sbjct: 74 DLTKTYFLVAGIAGIDPK 91
>gnl|CDD|237601 PRK14076, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 569
Score = 29.3 bits (66), Expect = 6.7
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAF 321
K++EI+ SNL G FA L+L+TL K+ K++ I + L Y + +AF
Sbjct: 162 KKIEISNISNLKDASIGLFAYGLSLDTLKFIKDRKVRRIRLFGSIALEMCYVASGALDAF 221
Query: 322 TSFSESMLAWPELRTIDIA 340
+ +E+ R DIA
Sbjct: 222 INVNETT------RLCDIA 234
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 29.2 bits (66), Expect = 6.9
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 13/60 (21%)
Query: 451 GLSYLKRLEITGAS-----NLTRVRKGA----FADNLNLE----TLTLNKNPKLKIIEED 497
G SY+KR +TG + +LT+ G+ F+ N N E T+TL N ++K ++ D
Sbjct: 571 GPSYIKRFNVTGVTRDKEYDLTQGTPGSKVLYFSANPNGEAEVVTVTLKPNGRIKKLKFD 630
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 28.9 bits (64), Expect = 9.7
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 494 IEEDALVGLPNLYHLNLK-----ENAFTSFSESMLAWPELRTIDIAENPIECGCNIL--W 546
++ ++L LP LK ENA TS S+ PEL+ +D+++N I L
Sbjct: 311 VQSNSLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLPPT 368
Query: 547 LREMLVRRNT-SAVFCNSPAPLKY 569
+ + V RN + + N PA L+
Sbjct: 369 ITTLDVSRNALTNLPENLPAALQI 392
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.394
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,431,338
Number of extensions: 2913467
Number of successful extensions: 1866
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1792
Number of HSP's successfully gapped: 78
Length of query: 581
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 479
Effective length of database: 6,413,494
Effective search space: 3072063626
Effective search space used: 3072063626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.3 bits)