RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8551
(581 letters)
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 243 bits (621), Expect = 5e-74
Identities = 85/394 (21%), Positives = 151/394 (38%), Gaps = 13/394 (3%)
Query: 23 STRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWL 81
S +D + +P + L L NRIKT++ + L+ ++L+
Sbjct: 10 SAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69
Query: 82 IIPIGGFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLT 139
+ G F L L L N+ P + + + +++I +N+I + F+ L
Sbjct: 70 AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI-SENKIVILLDYMFQDLY 128
Query: 140 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 199
L+ L + DN L + +F L L +L + T++ A + L L L LR +
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188
Query: 200 TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLS 259
I D +F+ L L+ L ++ T L L I + + + L
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248
Query: 260 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319
YL+ L ++ + ++ + + L L+ + L +L +E A GL L LN+ N
Sbjct: 249 YLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN 306
Query: 320 AFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVR--RNTSAVFCNSPAPLKYK 376
T+ ES+ L T+ + NP+ C C +LW+ R N C +P ++ K
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGK 366
Query: 377 SLISLS----AEDLGCAGAGLTNISDNAFRGLSG 406
C A + + G
Sbjct: 367 EFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEG 400
Score = 231 bits (590), Expect = 2e-69
Identities = 95/442 (21%), Positives = 153/442 (34%), Gaps = 82/442 (18%)
Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
R + + +VP L +G N TL F L L+L ++
Sbjct: 14 RAVLCHRKRFVAVPEGIPTET---RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70
Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
+ AF L LR+L L NRL+ IP + L+ L +L+I +N +L F+ L L
Sbjct: 71 VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130
Query: 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAF 321
K LE+ ++L + AF+ +LE LTL K L +I AL L
Sbjct: 131 KSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHL------------- 175
Query: 322 TSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISL 381
L + + I
Sbjct: 176 ----------HGLIVLRLRHLNI------------------------------------- 188
Query: 382 SAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 441
I D +F+ L L+ L ++ T L L I
Sbjct: 189 ------------NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236
Query: 442 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVG 501
+ + + L YL+ L ++ + ++ + + L L+ + L +L ++E A G
Sbjct: 237 TAVPYLAVRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRG 294
Query: 502 LPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVR--RNTSA 558
L L LN+ N T+ ES+ L T+ + NP+ C C +LW+ R N
Sbjct: 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQ 354
Query: 559 VFCNSPAPLKYKSLISLSAEDL 580
C +P ++ K L
Sbjct: 355 PTCATPEFVQGKEFKDFPDVLL 376
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 218 bits (558), Expect = 4e-65
Identities = 93/372 (25%), Positives = 136/372 (36%), Gaps = 80/372 (21%)
Query: 23 STRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLI 82
S + L +P + + L L N I+
Sbjct: 53 SNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM----------------------- 89
Query: 83 IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALR 142
I F L LQL N I +I+ F GL +L
Sbjct: 90 IQADTFRHLHHLEVLQLGRN-----------------------SIRQIEVGAFNGLASLN 126
Query: 143 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG-LTN 201
L L DN L +P+ +F YL L EL + N ++ AFN + L LDL L
Sbjct: 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186
Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
IS+ AF GL L+ L L ++ +P L+ L LEELE+ N F + G F GLS
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLS-- 242
Query: 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAF 321
+L+ L + + ++ IE A GL +L LNL N
Sbjct: 243 -----------------------SLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNL 278
Query: 322 TSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSPAPLKYK 376
+S + L + + NP C C+ILWL L +T C++P ++ +
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGR 338
Query: 377 SLISLSAEDLGC 388
L+ + C
Sbjct: 339 YLVEVDQASFQC 350
Score = 171 bits (434), Expect = 2e-47
Identities = 78/375 (20%), Positives = 133/375 (35%), Gaps = 89/375 (23%)
Query: 213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 272
+V T L +P + + L + +N M++A F+ L
Sbjct: 56 FSKVVCTRRGLSEVPQG-IP--SNTRYLNLMENNIQMIQADTFRHLH------------- 99
Query: 273 TRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA-W 331
+LE L L +N ++ IE GA GL +L L L +N T
Sbjct: 100 ------------HLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146
Query: 332 PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGA 391
+LR + + NPI
Sbjct: 147 SKLRELWLRNNPI----------------------------------------------- 159
Query: 392 GLTNISDNAFRGLSGLRSLVLTD-NRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK 450
+I AF + L L L + +L+ I L L+ L +G +
Sbjct: 160 --ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LT 215
Query: 451 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 510
L L+ LE++G ++ +R G+F +L+ L + + ++ +IE +A GL +L LNL
Sbjct: 216 PLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNL 273
Query: 511 KENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSPA 565
N +S + L + + NP C C+ILWL L +T C++P
Sbjct: 274 AHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPM 333
Query: 566 PLKYKSLISLSAEDL 580
++ + L+ +
Sbjct: 334 HMRGRYLVEVDQASF 348
Score = 153 bits (388), Expect = 5e-41
Identities = 66/300 (22%), Positives = 97/300 (32%), Gaps = 56/300 (18%)
Query: 141 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
+ L VP L + N + F L L L L +
Sbjct: 56 FSKVVCTRRGLSEVPQGIPSNT---RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112
Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
I AF GL+ L +L L DN L IP+ L++L EL + N + + F +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172
Query: 261 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENA 320
L RL++ L + +GAF NL+ L L +K + L L L L + N
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP--NLTPLVGLEELEMSGNH 229
Query: 321 FTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLI 379
F L+ + + + +
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQV----------------------------------- 254
Query: 380 SLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439
+ I NAF GL+ L L L N L S+P + L L EL + N
Sbjct: 255 --------------SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 219 bits (561), Expect = 4e-64
Identities = 118/611 (19%), Positives = 195/611 (31%), Gaps = 69/611 (11%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSH 77
P + + + L +P S + + LS N +K + + + LQ +DLS
Sbjct: 6 PCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSR 65
Query: 78 TTWLIIPIGGFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIF--GQNRISRIDQA 133
I + L L L N F S +E + +++ ++
Sbjct: 66 CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG---SFSGLTSLENLVAVETKLASLESF 122
Query: 134 CFEGLTALRILYLDDNQLRSVPTP-SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA- 191
L L+ L + N + S P F L L + + N T+ L
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182
Query: 192 ---LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQS-IPTKQLSKLTRLEELEIGQNGF 247
LD+ + I D AF+G+ L L L N S I L L L + F
Sbjct: 183 NLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241
Query: 248 ------SMLEAGCFKGLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKTI 300
+ E +GL + E F N+ ++L +K +
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYL 300
Query: 301 EEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLV-- 358
E+ L++ F L P L+++ + N + L +
Sbjct: 301 EDVP--KHFKWQSLSIIRCQLKQFPTLDL--PFLKSLTLTMNKGSISFKKVALPSLSYLD 356
Query: 359 -RRNT-SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNR 416
RN S C S + L SL L DL + G +S F GL L+ L +
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHL---DL--SFNGAIIMS-ANFMGLEELQHLDFQHST 410
Query: 417 LQSIPTKQ-LSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
L+ + L +L L+I + G F GL+ L L++ G S FA
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470
Query: 476 DNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA----------- 524
+ NL L L+K +L+ I L L LN+ N S
Sbjct: 471 NTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529
Query: 525 --------------WPELRTIDIAENPIECGCNILWLREMLVRRNT-----SAVFCNSPA 565
L ++ N + C C + + + + C +P
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPV 589
Query: 566 PLKYKSLISLS 576
+ ++ +
Sbjct: 590 EMNTSLVLDFN 600
Score = 137 bits (346), Expect = 2e-34
Identities = 60/375 (16%), Positives = 117/375 (31%), Gaps = 85/375 (22%)
Query: 18 EPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSH 77
E + S ++ L P+ P ++ L L+ N+ + + SL ++DLS
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALP-SLSYLDLSR 359
Query: 78 TTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFE- 136
N +S +
Sbjct: 360 -----------------------------------------------NALSFSGCCSYSD 372
Query: 137 -GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
G +LR L L N + F GL L LD +
Sbjct: 373 LGTNSLRHLDLSFNGAIIMS-------------------------ANFMGLEELQHLDFQ 407
Query: 196 GAGLTNISD-NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF-SMLEAG 253
+ L +++ +AF L L L ++ + LT L L++ N F +
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467
Query: 254 CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYH 313
F + L L+++ L ++ G F L+ L ++ N L ++ L +L
Sbjct: 468 VFANTTNLTFLDLSK-CQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLST 525
Query: 314 LNLKENAFTSFSESMLAWPE-LRTIDIAENPIECGCNILWLREMLVRRNT-----SAVFC 367
L+ N + + +P+ L ++ N + C C + + + + C
Sbjct: 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTC 585
Query: 368 NSPAPLKYKSLISLS 382
+P + ++ +
Sbjct: 586 ATPVEMNTSLVLDFN 600
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 219 bits (561), Expect = 6e-64
Identities = 110/570 (19%), Positives = 203/570 (35%), Gaps = 77/570 (13%)
Query: 30 NLQEANLDVIPSHS---NPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPI 85
L L + + +++ L I ++ + +L+ + L I +
Sbjct: 87 VLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146
Query: 86 GGFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEI-FGQNRISRIDQACFEGLTALR 142
P EKL L +N + ++ + S+ + + N I+ I+ F+ +
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV-FQ 205
Query: 143 ILYLDDNQLRSVPTP--SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS--ALDLRGAG 198
L Q V + L ++ F GL +S +++L+
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
NIS N F SGL+ L LT L +P L L+ L++L + N F L
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNF 324
Query: 259 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE--EGALVGLPNLYHLNL 316
L L I G + + G + NL L L+ + ++T + L L +L LNL
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNL 383
Query: 317 KENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 375
N S P+L +D+A ++
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLK------------------------------ 413
Query: 376 KSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 435
+ + F+ L L+ L L+ + L + L L+ L
Sbjct: 414 ------------------VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455
Query: 436 IGQN---GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 492
+ N ++ + + L L+ L ++ +L+ + + AF + + L+ N +L
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSF-CDLSSIDQHAFTSLKMMNHVDLSHN-RLT 513
Query: 493 IIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREML 551
+AL L +Y LNL N + S+L + RTI++ +NP++C C+ ++ E
Sbjct: 514 SSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572
Query: 552 VRRNT-----SAVFCNSPAPLKYKSLISLS 576
C +P L+ L ++
Sbjct: 573 KENMQKLEDTEDTLCENPPLLRGVRLSDVT 602
Score = 203 bits (518), Expect = 6e-58
Identities = 106/528 (20%), Positives = 171/528 (32%), Gaps = 70/528 (13%)
Query: 28 SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIG 86
+ N + L+ IP S + L S N + T+ + ++L +DL+ I
Sbjct: 16 TYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75
Query: 87 GFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRIL 144
F+ Q +L L L N + + + + + F Q IS ID L L
Sbjct: 76 TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF-FIQTGISSIDFIPLHNQKTLESL 134
Query: 145 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG--LTNI 202
YL N + S+ P L L N L+ + L + + L L G + I
Sbjct: 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194
Query: 203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLS--KLTRLEELEIGQNGFSMLEAGCFKGLSY 260
AF +SL + + K L + L + F+GL
Sbjct: 195 EPGAFDSAV-FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253
Query: 261 LKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319
+ I + + F L+ L L L + G LVGL L L L N
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSG-LVGLSTLKKLVLSAN 311
Query: 320 AFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSL 378
F + + + P L + I N
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTK---------------------------------- 337
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP--TKQLSKLTRLEELEI 436
+ L LR L L+ + +++ QL L+ L+ L +
Sbjct: 338 --------------RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383
Query: 437 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV-RKGAFADNLNLETLTLNKNPKLKIIE 495
N L+ FK L+ L++ + L + F + L+ L L+ + L I
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAF-TRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISS 441
Query: 496 EDALVGLPNLYHLNLKENAFTSFSESMLAW----PELRTIDIAENPIE 539
E GLP L HLNL+ N F + L + ++ +
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489
Score = 196 bits (500), Expect = 2e-55
Identities = 85/410 (20%), Positives = 144/410 (35%), Gaps = 23/410 (5%)
Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
+ ++ L +P L NV T+ + F+ L L+ LDL +
Sbjct: 15 KTYNCENLGLNEIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71
Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
I ++ F+ L +LVLT N L + LS L+ L Q G S ++ L
Sbjct: 72 IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131
Query: 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL--YHLNLKEN 319
+ L + ++++ ++ L+ L N + + + + L LNL N
Sbjct: 132 ESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGN 189
Query: 320 AFTSFSESMLAWPELRTIDIAENPIEC-------GCNILWLREMLVRRNTSAVFCNSPAP 372
++++ I L +P
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD----EDISP 245
Query: 373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 432
++ L +S E + NIS N F SGL+ L LT L +P L L+ L+
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLK 304
Query: 433 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 492
+L + N F L L L I G + + G + NL L L+ + ++
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIE 363
Query: 493 IIE--EDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIE 539
+ L L +L LNL N S P+L +D+A ++
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 213 bits (543), Expect = 5e-63
Identities = 95/379 (25%), Positives = 143/379 (37%), Gaps = 80/379 (21%)
Query: 23 STRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLI 82
S + NL +P + + + L L N+I+
Sbjct: 42 SNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQI----------------------- 78
Query: 83 IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALR 142
I + F+ L LQL+ N I I+ F GL L
Sbjct: 79 IKVNSFKHLRHLEILQLSRN-----------------------HIRTIEIGAFNGLANLN 115
Query: 143 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA-GLTN 201
L L DN+L ++P +F+YL L EL + N ++ AFN + L LDL L+
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175
Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
IS+ AF GLS LR L L L+ IP L+ L +L+EL++ N S + G F+GL
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLM-- 231
Query: 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAF 321
+L+ L + ++ +++ IE A L +L +NL N
Sbjct: 232 -----------------------HLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 322 TSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSPAPLKYK 376
T + L I + NP C C+ILWL + CN+P LK +
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGR 327
Query: 377 SLISLSAEDLGCAGAGLTN 395
+ L C +
Sbjct: 328 YIGELDQNYFTCYAPVIVE 346
Score = 167 bits (424), Expect = 4e-46
Identities = 79/377 (20%), Positives = 136/377 (36%), Gaps = 89/377 (23%)
Query: 211 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 270
+ ++ L+ +P +S T L + +N +++ FK L
Sbjct: 43 NQFSKVICVRKNLREVPDG-IS--TNTRLLNLHENQIQIIKVNSFKHLR----------- 88
Query: 271 NLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA 330
+LE L L++N ++TIE GA GL NL L L +N T+
Sbjct: 89 --------------HLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133
Query: 331 W-PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCA 389
+ +L+ + + NPI
Sbjct: 134 YLSKLKELWLRNNPI--------------------------------------------- 148
Query: 390 GAGLTNISDNAFRGLSGLRSLVLTD-NRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 448
+I AF + LR L L + RL I L+ L L + +
Sbjct: 149 ----ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-- 202
Query: 449 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 508
L L L+++G ++L+ +R G+F ++L+ L + ++ ++++IE +A L +L +
Sbjct: 203 LTPLIKLDELDLSG-NHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEI 260
Query: 509 NLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNS 563
NL N T + L I + NP C C+ILWL + CN+
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNT 320
Query: 564 PAPLKYKSLISLSAEDL 580
P LK + + L
Sbjct: 321 PPNLKGRYIGELDQNYF 337
Score = 152 bits (386), Expect = 8e-41
Identities = 66/300 (22%), Positives = 101/300 (33%), Gaps = 56/300 (18%)
Query: 141 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
+ LR VP L + N + +F L L L L +
Sbjct: 45 FSKVICVRKNLREVPDGISTNT---RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101
Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
I AF GL+ L +L L DNRL +IP L++L+EL + N + + F +
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161
Query: 261 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENA 320
L+RL++ L+ + +GAF NL L L L+ I L L L L+L N
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP--NLTPLIKLDELDLSGNH 218
Query: 321 FTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLI 379
++ L+ + + ++ I
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQI----------------------------------- 243
Query: 380 SLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439
I NAF L L + L N L +P + L LE + + N
Sbjct: 244 --------------QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 218 bits (556), Expect = 8e-62
Identities = 121/618 (19%), Positives = 225/618 (36%), Gaps = 85/618 (13%)
Query: 29 CNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSA-----------------IPIYL--- 68
+ NL +P + +RL+LS N I+TV ++ P+ +
Sbjct: 9 AFYRFCNLTQVPQV-LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67
Query: 69 ------SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISP-RRVEI 121
+L+ +DL + + F+ L EL+L + + +
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 122 --FGQNRISRID-QACFEGLTALRILYLDDNQLRSVPTPSFIYLGM--LAELRVGLNVFT 176
+N+I + F L +L+ + NQ+ V L L+ + N
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187
Query: 177 TLADGAFNGLG------RLSALDLRGAGLTNISDNAF------------RGLSGLRSLVL 218
+ + L LD+ G G T F +
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247
Query: 219 TDNRLQSIPTKQLSKLTR--LEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVR 276
+ ++ + L R + L++ L + F+ L LK L + + + ++
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-NKINKIA 306
Query: 277 KGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAW-PELR 335
AF NL+ L L+ N L + GLP + +++L++N + + +L+
Sbjct: 307 DEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365
Query: 336 TIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTN 395
T+D+ +N + I + ++ + N I+L+A + + L N
Sbjct: 366 TLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK----------INLTANLIHLSENRLEN 415
Query: 396 ISDNAF-RGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGF-----SMLEAGC 448
+ F + L+ L+L NR S Q S+ LE+L +G+N + L
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475
Query: 449 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 508
F+GLS+L+ L + + L + G F+ L L+LN N +L ++ + L NL L
Sbjct: 476 FEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDL--PANLEIL 531
Query: 509 NLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREML------VRRNTSAVFCN 562
++ N + + + L +DI N C C + L + + ++C
Sbjct: 532 DISRNQLLAPNPDVF--VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCV 589
Query: 563 SPAPLKYKSLISLSAEDL 580
P SL SLS E
Sbjct: 590 YPDSFSGVSLFSLSTEGC 607
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 206 bits (525), Expect = 3e-59
Identities = 123/564 (21%), Positives = 196/564 (34%), Gaps = 74/564 (13%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
E N IP + S + L LS N ++ + + + LQ +DLS I G +
Sbjct: 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
+ L L L N I + F GL++L+ L +
Sbjct: 73 QSLSHLSTLILTGNP-----------------------IQSLALGAFSGLSSLQKLVAVE 109
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG-AFNGLGRLSALDLRGAGLTNISDNAF 207
L S+ +L L EL V N+ + F+ L L LDL + +I
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Query: 208 RGLSGLR----SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM-LEAGCFKGLSYLK 262
R L + SL L+ N + I ++ RL +L + N S+ + C +GL+ L+
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLE 228
Query: 263 RL-----EITGASNLTRVRKGAFAD--NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLN 315
E NL + K A NL +E L L N+ +
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288
Query: 316 LKENAFTSFSESMLAW--------------------PELRTIDIAENPIE---CGCNILW 352
L + + L+ + N ++
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348
Query: 353 LREMLVRRNT-SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLV 411
L + + RN S C S + SL L + G+ +S N F GL L L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD-----LSFNGVITMSSN-FLGLEQLEHLD 402
Query: 412 LTDNRLQSIP-TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVR 470
+ L+ + L L L+I + G F GLS L+ L++ G ++
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG-NSFQENF 461
Query: 471 KGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-PEL 528
L NL L L++ +L+ + A L +L LN+ N S + + L
Sbjct: 462 LPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520
Query: 529 RTIDIAENPIECGCN-ILWLREML 551
+ I + NP +C C I +L L
Sbjct: 521 QKIWLHTNPWDCSCPRIDYLSRWL 544
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 192 bits (491), Expect = 3e-57
Identities = 77/268 (28%), Positives = 113/268 (42%), Gaps = 30/268 (11%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV-FTTLADGAF 183
NRIS + A F L IL+L N L + +F L +L +L + N ++ F
Sbjct: 42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 184 NGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
+GLGRL L L GL + FRGL+ L+ L L DN LQ++P L L L +
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161
Query: 244 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEG 303
N S + F+GL +L+ L L++N ++ +
Sbjct: 162 GNRISSVPERAFRGLH-------------------------SLDRLLLHQN-RVAHVHPH 195
Query: 304 ALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLV--RR 360
A L L L L N ++ LA L+ + + +NP C C L L R
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRG 255
Query: 361 NTSAVFCNSPAPLKYKSLISLSAEDLGC 388
++S V C+ P L + L L+A DL
Sbjct: 256 SSSEVPCSLPQRLAGRDLKRLAANDLQG 283
Score = 147 bits (374), Expect = 2e-40
Identities = 70/315 (22%), Positives = 107/315 (33%), Gaps = 81/315 (25%)
Query: 271 NLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENA-FTSFSESML 329
++ V +F NL L L+ N L I+ A GL L L+L +NA S +
Sbjct: 43 RISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 330 AW-PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGC 388
L T+ + +
Sbjct: 102 HGLGRLHTLHLDRCGL-------------------------------------------- 117
Query: 389 AGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 448
+ FRGL+ L+ L L DN LQ++P L L L + N S +
Sbjct: 118 -----QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172
Query: 449 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 508
F+GL +L+ L L++N ++ + A L L L
Sbjct: 173 FRGLH-------------------------SLDRLLLHQN-RVAHVHPHAFRDLGRLMTL 206
Query: 509 NLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLV--RRNTSAVFCNSPA 565
L N ++ LA L+ + + +NP C C L L R ++S V C+ P
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ 266
Query: 566 PLKYKSLISLSAEDL 580
L + L L+A DL
Sbjct: 267 RLAGRDLKRLAANDL 281
Score = 134 bits (340), Expect = 9e-36
Identities = 54/272 (19%), Positives = 92/272 (33%), Gaps = 54/272 (19%)
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
GL + + + + L NR+ +P L L + N + ++
Sbjct: 16 TSCPQQGLQAVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL 311
A F GL+ L++L+++ + L V F L TL L++ L+ + G GL L
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAAL 131
Query: 312 YHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSP 370
+L L++NA + + L + + N I
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-------------------------- 165
Query: 371 APLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTR 430
+++ + AFRGL L L+L NR+ + L R
Sbjct: 166 -----------------------SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 431 LEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 462
L L + N S L L L+ L +
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLND 234
Score = 97.4 bits (243), Expect = 1e-22
Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 5/153 (3%)
Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG 447
C GL + + + + L NR+ +P L L + N + ++A
Sbjct: 18 CPQQGLQAVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74
Query: 448 CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYH 507
F GL+ L++L+++ + L V F L TL L++ L+ + GL L +
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQY 133
Query: 508 LNLKENAFTSFSESMLAW-PELRTIDIAENPIE 539
L L++NA + + L + + N I
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 194 bits (496), Expect = 3e-54
Identities = 105/523 (20%), Positives = 197/523 (37%), Gaps = 78/523 (14%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
+ L +P +I L L+ N+++ + + Y L +D+
Sbjct: 10 DCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF----------- 58
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
N IS+++ + L L++L L
Sbjct: 59 ------------------------------------NTISKLEPELCQKLPMLKVLNLQH 82
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR 208
N+L + +F + L EL + N + + F L LDL GL++
Sbjct: 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142
Query: 209 GLSGLRSLVLTDNRLQSIPTKQLS--KLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
L L+ L+L++N++Q++ +++L + L++LE+ N GCF + L L +
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202
Query: 267 TGASNLTRVRKGAFAD--NLNLETLTLNKNPKLKTIEEGALVGL--PNLYHLNLKENAFT 322
+ + + N ++ L+L+ + +L T +GL NL L+L N
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261
Query: 323 SFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISL 381
AW P+L + N I + S ++Y +L
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNI--------------QHLFSHSLHGLFN-VRYLNL-KR 305
Query: 382 SAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 441
S + A L I D +F+ L L L + DN + I + + L L+ L + +
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365
Query: 442 SM--LEAGCFKGL--SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED 497
S+ L F L S L L +T + ++++ AF+ +LE L L N + +
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTK-NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424
Query: 498 ALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIE 539
GL N++ + L N + + + A P L+ + + ++
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467
Score = 175 bits (445), Expect = 2e-47
Identities = 97/584 (16%), Positives = 190/584 (32%), Gaps = 102/584 (17%)
Query: 28 SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSH---TTWLII 83
+ +Q + + +N S+++L LS+N+IK + L + L++ L
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213
Query: 84 PIGGFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEI-FGQNRISRIDQACFEGLTA 140
+ + L L++++ + + N ++ + F L
Sbjct: 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273
Query: 141 LRILYLDDNQLRSVPTPSFIYLGMLAELR---------VGLNVFTTLADGAFNGLGRLSA 191
L +L+ N ++ + + S L + L + L + D +F L L
Sbjct: 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ--SIPTKQLSKL--TRLEELEIGQNGF 247
L++ + I N F GL L+ L L+++ ++ + L + L L + +N
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393
Query: 248 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG 307
S +E+ F L +L+ L++ + + N+ + L+ N K + +
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFAL 452
Query: 308 LPNLYHLNLKENAFTSFSESMLAW---PELRTIDIAENPIECGCNILWLREMLVRRNTSA 364
+P+L L L+ A + S + L +D++ N I
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA--------------NINDD 498
Query: 365 VFCNSPAPLKYKSLISLSAED---LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 421
+ L L + +GLS L L L N IP
Sbjct: 499 MLEGLE------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552
Query: 422 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE 481
+ L L+ +++G N + L A F +L+
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQV-------------------------SLK 587
Query: 482 TLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 541
+L L KN + +E+ L +D+ NP +C
Sbjct: 588 SLNLQKN-LITSVEKKVFGPAF----------------------RNLTELDMRFNPFDCT 624
Query: 542 C-NILWLREML------VRRNTSAVFCNSPAPLKYKSLISLSAE 578
C +I W + + +S CN+P +
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTS 668
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 186 bits (473), Expect = 7e-53
Identities = 92/440 (20%), Positives = 167/440 (37%), Gaps = 65/440 (14%)
Query: 148 DNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL-TNISDN 205
+ L VP P+ + + + LN L + +F+ L L L + I +N
Sbjct: 19 NRGLHQVPELPAHV-----NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN 73
Query: 206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF--SMLEAGCFKGLSYLKR 263
FRGLS L L L N+ + T + L LE L + Q ++L FK L+ L+
Sbjct: 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133
Query: 264 LEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLP--NLYHLNLKENA 320
L + +N+ +++ +F N+ L L N +K+I E L+ + L L
Sbjct: 134 LVLRD-NNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSIT 191
Query: 321 FTSFSESMLAWPE---------LRTIDIAENPIEC--------GCNILWLREMLVRRNTS 363
+E L W + + T+D++ N + ++ +++ + +
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251
Query: 364 AVFC------NSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRL 417
P +K L + + + + + + + F + L L L N +
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311
Query: 418 QSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADN 477
I LT L +L + QN +++ F+ L
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD------------------------ 347
Query: 478 LNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAEN 536
LE L L+ N ++ + + + +GLPNL L L N S + + L+ I + N
Sbjct: 348 -KLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Query: 537 PIECGCN-ILWLREMLVRRN 555
P +C C I +L L + +
Sbjct: 406 PWDCSCPRIDYLSRWLNKNS 425
Score = 121 bits (304), Expect = 1e-29
Identities = 52/281 (18%), Positives = 94/281 (33%), Gaps = 52/281 (18%)
Query: 42 HSNPSIQRLVLSTNRIKTVDSAI--------PIYLSLQHVDLSHTTWLII---PIGGFEP 90
+ L L+ N++K++ L L + L + G
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210
Query: 91 QEKLVELQLNHNK--HFPQQIVCSIISPRRVEI------------FGQNRISRIDQACFE 136
+ L L+ N + I+ +++ FG D F+
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 137 GL--TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
GL + ++ L +++ ++ F + L +L + N + D AF GL L L+L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330
Query: 195 RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 254
L +I F L L L L+ N ++++ + L L+EL + N
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN--------- 381
Query: 255 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 295
L V G F +L+ + L+ NP
Sbjct: 382 ----------------QLKSVPDGIFDRLTSLQKIWLHTNP 406
Score = 39.3 bits (92), Expect = 0.003
Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 27/127 (21%)
Query: 30 NLQEANLDVIPS---HSNPSIQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPI 85
L + ++ I + +L LS N + ++DS + L L+ +DLS+ +
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364
Query: 86 GGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILY 145
F L EL L+ N+ + + F+ LT+L+ ++
Sbjct: 365 QSFLGLPNLKELALDTNQ-----------------------LKSVPDGIFDRLTSLQKIW 401
Query: 146 LDDNQLR 152
L N
Sbjct: 402 LHTNPWD 408
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 186 bits (473), Expect = 4e-52
Identities = 97/574 (16%), Positives = 189/574 (32%), Gaps = 80/574 (13%)
Query: 28 SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPIG 86
C+ + + IPS +++ L LS N+I + + +LQ + L + I
Sbjct: 9 VCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68
Query: 87 GFEPQEKLVELQLNHNK-----------------------HFPQQIVCSIISP----RRV 119
F L L L+ N + V S+ + +
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
Query: 120 EIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 179
I S I + F GLT+L L + LR+ + S + + L + L+ L
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188
Query: 180 DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEE 239
+ + L + L+LR L + + R + + ++L +L
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL-- 246
Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKT 299
L F + L L S V + + + + L + + L
Sbjct: 247 ----LRYILELSEVEFDDCT-LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF-YLFY 300
Query: 300 IEEGALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLV 358
L + + ++ + S L +D++EN +
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM-------------- 346
Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISD--NAFRGLSGLRSLVLTDNR 416
NS + SL +L L + L ++ L L SL ++ N
Sbjct: 347 ---VEEYLKNSACKGAWPSLQTL---VL--SQNHLRSMQKTGEILLTLKNLTSLDISRNT 398
Query: 417 LQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD 476
+P ++ L + G +++ + L L +++ +F+
Sbjct: 399 FHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVL---------DVSNNNLDSFSL 448
Query: 477 NL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIA 534
L L+ L +++N KLK + + +L P L + + N S + + L+ I +
Sbjct: 449 FLPRLQELYISRN-KLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505
Query: 535 ENPIECGCN-ILWLREML---VRRNTSAVFCNSP 564
NP +C C I +L L ++ + C+
Sbjct: 506 TNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 539
Score = 115 bits (289), Expect = 2e-27
Identities = 56/355 (15%), Positives = 111/355 (31%), Gaps = 40/355 (11%)
Query: 211 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 270
SIP+ + + L++ N + + G + + L+ L + S
Sbjct: 5 DASGVCDGRSRSFTSIPSGLTAAMK---SLDLSFNKITYIGHGDLRACANLQVLILKS-S 60
Query: 271 NLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESML- 329
+ + AF +LE L L+ N L ++ L +L +LNL N + + + L
Sbjct: 61 RINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119
Query: 330 -AWPELRTIDIAEN------PIECGCNILWLREMLVRRNT-SAVFCNSPAPLKYKSLISL 381
L+T+ I + L E+ ++ + S ++ ++L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179
Query: 382 SAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 441
+ + + LS +R L L D L L ++
Sbjct: 180 H-------LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232
Query: 442 SMLEAGCFKGLSYLKR-----------------LEITGASNLTRVRKGAFADNLNLETLT 484
S+L F L L R L S V + + + + L
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292
Query: 485 LNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPI 538
+ + L L + + ++ + S L +D++EN +
Sbjct: 293 IPQF-YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 172 bits (439), Expect = 2e-49
Identities = 65/371 (17%), Positives = 122/371 (32%), Gaps = 76/371 (20%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHT 78
PSR S L +P+ S RL L +N++++
Sbjct: 2 PSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS------------------- 42
Query: 79 TWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGL 138
+P G F+ +L +L L+ N G
Sbjct: 43 ----LPHGVFDKLTQLTKLSLSSNGL---------------------SFKGCCSQSDFGT 77
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLRGA 197
T+L+ L L N + ++ +F+ L L L + + F L L LD+
Sbjct: 78 TSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNR-LQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK 256
+ F GLS L L + N ++ ++L L L++ Q L F
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196
Query: 257 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNL 316
LS L+ L ++ +N + + +L+ L + N + T ++ L P+
Sbjct: 197 SLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSS----- 249
Query: 317 KENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR-----NTSAVFCNSPA 371
L +++ +N C C + + + + C +P+
Sbjct: 250 -----------------LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292
Query: 372 PLKYKSLISLS 382
+ ++SL+
Sbjct: 293 DKQGMPVLSLN 303
Score = 146 bits (370), Expect = 9e-40
Identities = 61/372 (16%), Positives = 115/372 (30%), Gaps = 87/372 (23%)
Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 273
+ L S+PT S TRLE + N L G F L+
Sbjct: 10 TEIRCNSKGLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLT-------------- 52
Query: 274 RVRKGAFADNLNLETLTLNKNP-KLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWP 332
L L+L+ N K + G +L +L+L N + S + L
Sbjct: 53 -----------QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 101
Query: 333 ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAG 392
+L +D + ++
Sbjct: 102 QLEHLDFQHSNLK----------------------------------------------- 114
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF-SMLEAGCFKG 451
+ F L L L ++ + + L+ LE L++ N F F
Sbjct: 115 -QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173
Query: 452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 511
L L L+++ L ++ AF +L+ L ++ N ++ L +L L+
Sbjct: 174 LRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYS 231
Query: 512 ENAFTSFSESMLA--WPELRTIDIAENPIECGCNILWLREMLVRR-----NTSAVFCNSP 564
N + + L L +++ +N C C + + + + C +P
Sbjct: 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291
Query: 565 APLKYKSLISLS 576
+ + ++SL+
Sbjct: 292 SDKQGMPVLSLN 303
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 171 bits (436), Expect = 3e-48
Identities = 74/432 (17%), Positives = 135/432 (31%), Gaps = 70/432 (16%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
+++D I L + + L + ++ L+L
Sbjct: 20 DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 257
+ I AF ++ L + N ++ +P + L L + +N S L G F
Sbjct: 80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139
Query: 258 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLK 317
L L ++ +NL R+ F +L+ L L+ N +L ++ + P+L+H N+
Sbjct: 140 TPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLI---PSLFHANVS 194
Query: 318 ENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKS 377
N ++ + + +D + N I N
Sbjct: 195 YNLLSTLAIP----IAVEELDASHNSI-----------------------NVVRGPVNVE 227
Query: 378 LISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 437
L L LT+ + GL + L+ N L+ I K+ RLE L I
Sbjct: 228 LTILK-----LQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280
Query: 438 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED 497
N L L+ L L+ N L +E +
Sbjct: 281 NNRLVALNL--------------------------YGQPIPTLKVLDLSHN-HLLHVERN 313
Query: 498 ALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREML-VRRNT 556
L +L L N+ + S L+ + ++ N +C R + +
Sbjct: 314 QP-QFDRLENLYLDHNSIVTLKLSTH--HTLKNLTLSHNDWDCNSLRALFRNVARPAVDD 370
Query: 557 SAVFCNSPAPLK 568
+ C L+
Sbjct: 371 ADQHCKIDYQLE 382
Score = 153 bits (388), Expect = 2e-41
Identities = 63/426 (14%), Positives = 128/426 (30%), Gaps = 90/426 (21%)
Query: 8 ELRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSN-PSIQRLVLSTNRIKTVDSAIPI 66
+ KC++ D ++Q ++ + + + + ++ + +A+
Sbjct: 7 QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD 66
Query: 67 YL-SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQN 125
++ ++L+ I F + +L + N
Sbjct: 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-----------------------N 103
Query: 126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 185
I + F+ + L +L L+ N L S+P F L L + N + D F
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L L LT++ + L ++ N L ++ +EEL+ N
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLSTLA-----IPIAVEELDASHN 215
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGAL 305
+++ L+ LK NLT + L + L+ N +L+ I
Sbjct: 216 SINVVRGPVNVELTILKLQHN----NLTDT--AWLLNYPGLVEVDLSYN-ELEKIMYHPF 268
Query: 306 VGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAV 365
V + L L + N + + P L+ +D++ N +
Sbjct: 269 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL--------------------- 307
Query: 366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQL 425
++ N L +L L N + ++
Sbjct: 308 ----------------------------LHVERNQP-QFDRLENLYLDHNSIVTLKLSTH 338
Query: 426 SKLTRL 431
L L
Sbjct: 339 HTLKNL 344
Score = 149 bits (377), Expect = 5e-40
Identities = 67/350 (19%), Positives = 121/350 (34%), Gaps = 47/350 (13%)
Query: 30 NLQEANLDVIPSHS---NPSIQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPI 85
NL + ++ I +++ +IQ+L + N I+ + + + L + L +P
Sbjct: 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134
Query: 86 GGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILY 145
G F KL L +++ N + RI+ F+ T+L+ L
Sbjct: 135 GIFHNTPKLTTLSMSN-----------------------NNLERIEDDTFQATTSLQNLQ 171
Query: 146 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN 205
L N+L V + L V N+ +TLA + LD + +
Sbjct: 172 LSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAI-----PIAVEELDASHNSINVVRGP 223
Query: 206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 265
L L L N L L L E+++ N + F + L+RL
Sbjct: 224 VN---VELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278
Query: 266 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS 325
I+ + L + L+ L L+ N L +E L +L L N+ +
Sbjct: 279 ISN-NRLVALN-LYGQPIPTLKVLDLSHN-HLLHVERNQP-QFDRLENLYLDHNSIVTLK 334
Query: 326 ESMLAWPELRTIDIAENPIECGCNILWLREML-VRRNTSAVFCNSPAPLK 374
S L+ + ++ N +C R + + + C L+
Sbjct: 335 LSTH--HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLE 382
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 175 bits (446), Expect = 7e-48
Identities = 119/629 (18%), Positives = 205/629 (32%), Gaps = 101/629 (16%)
Query: 18 EPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLS 76
EP + + E N IP + S + L LS N ++ + + + LQ +DLS
Sbjct: 1 EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60
Query: 77 HTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFE 136
I G ++ L L L N I + F
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTG-----------------------NPIQSLALGAFS 97
Query: 137 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLR 195
GL++L+ L + L S+ +L L EL V N+ + F+ L L LDL
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 196 GAGLTNISDNAFRGLSGLR----SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM-L 250
+ +I R L + SL L+ N + I ++ RL +L + N S+ +
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV 216
Query: 251 EAGCFKGLS-----YLKRLEITGASNLTRVRKGAFAD--NLNLETLTLNKNPKLKTIEEG 303
C +GL+ L E NL + K A NL +E L
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276
Query: 304 ALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTS 363
L N+ +L + + + +++ L L+ + TS
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTS 334
Query: 364 AVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTK 423
N+ + + SL L DL G + G + L+ L L+ N + ++ +
Sbjct: 335 NKGGNAFSEVDLPSLEFL---DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS- 390
Query: 424 QLSKLTRLEELEIGQNGFS-MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLET 482
L +LE L+ + M E F L L L+I+ ++ G F +LE
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEV 449
Query: 483 LTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAEN----- 536
L + N + D L NL L+L + S + L+ ++++ N
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
Query: 537 --------------------------------------------PIECGCNILWLREMLV 552
C C + +
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 569
Query: 553 RRNT-----SAVFCNSPAPLKYKSLISLS 576
+ + C +P+ + ++SL+
Sbjct: 570 DQRQLLVEVERMECATPSDKQGMPVLSLN 598
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 167 bits (425), Expect = 5e-47
Identities = 71/360 (19%), Positives = 116/360 (32%), Gaps = 62/360 (17%)
Query: 25 RDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIP 84
R+ C +L+ IPS +++ L LS NRI I
Sbjct: 32 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-----------------------IS 68
Query: 85 IGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRIL 144
+ L L L N I+ I++ F L +L L
Sbjct: 69 NSDLQRCVNLQALVLTSNG-----------------------INTIEEDSFSSLGSLEHL 105
Query: 145 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDL-RGAGLTNI 202
L N L ++ + F L L L + N + TL + F+ L +L L + T I
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165
Query: 203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLK 262
F GL+ L L + + LQS K L + + L + +L S ++
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225
Query: 263 RLEITG-------ASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLN 315
LE+ S L+ + + + L + L L
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES--LFQVMKLLNQISGLLELE 283
Query: 316 LKENAFTSFSESMLA-WPELRTIDIAENPIECGCN-ILWLREMLVR---RNTSAVFCNSP 370
N S + + L+ I + NP +C C I +L L + + + C+
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 343
Score = 156 bits (395), Expect = 9e-43
Identities = 68/382 (17%), Positives = 117/382 (30%), Gaps = 85/382 (22%)
Query: 193 DLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 252
L +I ++SL L++NR+ I L + L+ L + NG + +E
Sbjct: 37 KGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93
Query: 253 GCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLY 312
F L +LE L L+ N L + L +L
Sbjct: 94 DSFSSLG-------------------------SLEHLDLSYN-YLSNLSSSWFKPLSSLT 127
Query: 313 HLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAP 372
LNL N + + E+ ++F +
Sbjct: 128 FLNLLGNPYKTLGET------------------------------------SLFSH---- 147
Query: 373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 432
L L +G T I F GL+ L L + + LQS K L + +
Sbjct: 148 -----LTKLQILRVGN-MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201
Query: 433 ELEIGQNGFSMLEAGCFKGLSYLKRLEITG----ASNLTRVRKGAFADNLNLETLTLNKN 488
L + +L S ++ LE+ + + + G + T K
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261
Query: 489 PKLKIIE-EDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCN-IL 545
+ + L + L L N S + + L+ I + NP +C C I
Sbjct: 262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 321
Query: 546 WLREMLVR---RNTSAVFCNSP 564
+L L + + + C+
Sbjct: 322 YLSRWLNKNSQKEQGSAKCSGS 343
Score = 141 bits (358), Expect = 1e-37
Identities = 69/303 (22%), Positives = 120/303 (39%), Gaps = 45/303 (14%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
A++ L L +N++ + L L + N T+ + +F+ LG L LDL
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSI-PTKQLSKLTRLEELEIGQNG-FSMLEAGCFK 256
L+N+S + F+ LS L L L N +++ T S LT+L+ L +G F+ ++ F
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 257 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNL 316
GL++L+ LEI AS+L + N+ L L+ + E + ++ L L
Sbjct: 172 GLTFLEELEI-DASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLEL 229
Query: 317 KENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYK 376
++ +F S L S NS
Sbjct: 230 RDTDLDTFHFSEL---------------------------------STGETNSLIKKFTF 256
Query: 377 SLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 436
+ ++ E L +SGL L + N+L+S+P +LT L+++ +
Sbjct: 257 RNVKITDESL--------FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL 308
Query: 437 GQN 439
N
Sbjct: 309 HTN 311
Score = 65.1 bits (159), Expect = 2e-11
Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 7/136 (5%)
Query: 404 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 463
+ L SIP+ ++ L++ N + + + L+ L +T
Sbjct: 30 CDRNGICKGSSGSLNSIPS---GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS- 85
Query: 464 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 523
+ + + + +F+ +LE L L+ N L + L +L LNL N + + E+ L
Sbjct: 86 NGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144
Query: 524 --AWPELRTIDIAENP 537
+L+ + +
Sbjct: 145 FSHLTKLQILRVGNMD 160
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 160 bits (406), Expect = 1e-44
Identities = 80/398 (20%), Positives = 134/398 (33%), Gaps = 111/398 (27%)
Query: 28 SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
+ L+ +P P L L N+I I G
Sbjct: 35 VVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-----------------------IKDGD 71
Query: 88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
F+ + L L L +NK IS+I F L L LYL
Sbjct: 72 FKNLKNLHTLILINNK-----------------------ISKISPGAFAPLVKLERLYLS 108
Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN--ISDN 205
NQL+ +P L ELRV N T + FNGL ++ ++L L + I +
Sbjct: 109 KNQLKELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 265
AF+G+ L + + D + +IP LT EL + N + ++A KGL+ L +L
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 266 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS 325
++ ++++ V G+ A+ +L L LN N KL + G L + + L N ++
Sbjct: 223 LSF-NSISAVDNGSLANTPHLRELHLNNN-KLVKV-PGGLADHKYIQVVYLHNNNISAIG 279
Query: 326 ESMLA-------WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSL 378
+ + + NP++
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQ--------------------------------- 306
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNR 416
I + FR + ++ L + +
Sbjct: 307 --------------YWEIQPSTFRCVYVRAAVQLGNYK 330
Score = 149 bits (379), Expect = 9e-41
Identities = 73/380 (19%), Positives = 126/380 (33%), Gaps = 90/380 (23%)
Query: 141 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
LR++ D L VP L T L LDL+ +T
Sbjct: 33 LRVVQCSDLGLEKVPK--------------DLPPDTAL-------------LDLQNNKIT 65
Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
I D F+ L L +L+L +N++ I + L +LE L + +N L K L
Sbjct: 66 EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE 125
Query: 261 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP-KLKTIEEGALVGLPNLYHLNLKEN 319
L R+ + +T+VRK F + + L NP K IE GA G+ L ++ + +
Sbjct: 126 L-RVH---ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181
Query: 320 AFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLI 379
T+ + + P L + + N I
Sbjct: 182 NITTIPQGLP--PSLTELHLDGNKI----------------------------------- 204
Query: 380 SLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439
T + + +GL+ L L L+ N + ++ L+ L EL + N
Sbjct: 205 --------------TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 440 GFSMLEAGCFKGLSYLKRL-----EITGASNLTRVRKGAFADNLNLETLTLNKNP-KLKI 493
+ G Y++ + I+ + G + ++L NP +
Sbjct: 251 KLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309
Query: 494 IEEDALVGLPNLYHLNLKEN 513
I+ + + L
Sbjct: 310 IQPSTFRCVYVRAAVQLGNY 329
Score = 137 bits (348), Expect = 2e-36
Identities = 58/360 (16%), Positives = 111/360 (30%), Gaps = 75/360 (20%)
Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
L + GL + + L L +N++ I L L L + N S
Sbjct: 33 LRVVQCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 249 MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGL 308
+ G F L L+RL ++ + L + + L+ L +++N ++ + + GL
Sbjct: 90 KISPGAFAPLVKLERLYLSK-NQLKELPEKMPK---TLQELRVHEN-EITKVRKSVFNGL 144
Query: 309 PNLYHLNLKENAFTSFSESMLAW---PELRTIDIAENPIECGCNILWLREMLVRRNTSAV 365
+ + L N S A+ +L I IA+ I
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI--------------------- 183
Query: 366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQL 425
T I L L L N++ + L
Sbjct: 184 ----------------------------TTIPQGLP---PSLTELHLDGNKITKVDAASL 212
Query: 426 SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTL 485
L L +L + N S ++ G +L+ L + + L +V G AD+ ++ + L
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN-NKLVKV-PGGLADHKYIQVVYL 270
Query: 486 NKNPKLKIIEEDA------LVGLPNLYHLNLKENAFTSFSESMLAW---PELRTIDIAEN 536
+ N + I + + ++L N + + + +
Sbjct: 271 HNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 112 bits (281), Expect = 2e-27
Identities = 65/330 (19%), Positives = 107/330 (32%), Gaps = 89/330 (26%)
Query: 213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 272
LR + +D L+ +P L T L++ N + ++ G FK L
Sbjct: 33 LRVVQCSDLGLEKVPKD-LPPDTA--LLDLQNNKITEIKDGDFKNLK------------- 76
Query: 273 TRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWP 332
NL TL L N K+ I GA L L L L +N E M
Sbjct: 77 ------------NLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--K 121
Query: 333 ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAG 392
L+ + + EN I
Sbjct: 122 TLQELRVHENEI------------------------------------------------ 133
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQS--IPTKQLSKLTRLEELEIGQNGFSMLEAGCFK 450
T + + F GL+ + + L N L+S I + +L + I + + G
Sbjct: 134 -TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 192
Query: 451 GLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 509
L+ L L+ N +T+V + NL L L+ N + ++ +L P+L L+
Sbjct: 193 SLTEL-HLD----GNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELH 246
Query: 510 LKENAFTSFSESMLAWPELRTIDIAENPIE 539
L N + ++ + + N I
Sbjct: 247 LNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 160 bits (405), Expect = 2e-42
Identities = 70/509 (13%), Positives = 143/509 (28%), Gaps = 140/509 (27%)
Query: 43 SNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHN 102
+ K +DS + V + T + + ++
Sbjct: 2 GGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS 61
Query: 103 KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 162
+ ++ A + + +L L+D Q+ + T +F Y
Sbjct: 62 T-----------------------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA 98
Query: 163 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNR 222
+ +L +G N L F + L+ L L L+++ F L +L +++N
Sbjct: 99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158
Query: 223 LQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD 282
L+ I T L+ L++ N + ++ L + N++ A
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA---------NVSYNLLSTLAI 209
Query: 283 NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAEN 342
+ +E L + N + + L L L+ N T + +L +P L +D++ N
Sbjct: 210 PIAVEELDASHN-SINVVRGPV---NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN 264
Query: 343 PIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFR 402
+ I + F
Sbjct: 265 EL-------------------------------------------------EKIMYHPFV 275
Query: 403 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 462
+ L L +++NRL ++
Sbjct: 276 KMQRLERLYISNNRLVALN----------------------------------------- 294
Query: 463 ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM 522
L+ L L+ N L +E + L +L L N+ + S
Sbjct: 295 ---------LYGQPIPTLKVLDLSHN-HLLHVERNQP-QFDRLENLYLDHNSIVTLKLST 343
Query: 523 LAWPELRTIDIAENPIECGCNILWLREML 551
L+ + ++ N +C R +
Sbjct: 344 H--HTLKNLTLSHNDWDCNSLRALFRNVA 370
Score = 121 bits (306), Expect = 2e-29
Identities = 84/553 (15%), Positives = 163/553 (29%), Gaps = 84/553 (15%)
Query: 30 NLQEANLDVIPSHS---NPSIQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPI 85
NL + ++ I +++ +IQ+L + N I+ + + + L + L +P
Sbjct: 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 140
Query: 86 GGFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLT---- 139
G F KL L +++N + S + +++ NR++ +D + L
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL-SSNRLTHVDLSLIPSLFHANV 199
Query: 140 ------------ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG 187
A+ L N + V P + L L++ N T
Sbjct: 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL---TILKLQHNNLTDT--AWLLNYP 254
Query: 188 RLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
L +DL L I + F + L L +++NRL ++ + L+ L++ N
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHL 313
Query: 248 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG 307
+E LE L L+ N + T++
Sbjct: 314 LHVERNQP---------------QFD-----------RLENLYLDHN-SIVTLKLST--- 343
Query: 308 LPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILW---------LREMLV 358
L +L L N + S L + + + + C + + L
Sbjct: 344 HHTLKNLTLSHNDWDCNSLRAL-FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLD 402
Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRL- 417
R + ++ + + + + I+ L G L N L
Sbjct: 403 RLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELR 462
Query: 418 --------------QSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 463
Q + T L + ++G + K ++LK +
Sbjct: 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKL 522
Query: 464 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 523
R A A E L K ++ +LK
Sbjct: 523 RETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582
Query: 524 AWPELRTIDIAEN 536
P+ R + +
Sbjct: 583 RNPDTRRVSHHHH 595
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 149 bits (378), Expect = 1e-40
Identities = 73/378 (19%), Positives = 120/378 (31%), Gaps = 87/378 (23%)
Query: 141 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
LR++ D L++VP L + N + L F GL L AL L ++
Sbjct: 35 LRVVQCSDLGLKAVPKEISPDT---TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
I + AF L L+ L ++ N L IP S L EL I N + G F GL
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV---ELRIHDNRIRKVPKGVFSGLRN 148
Query: 261 LKRLEITGASN---LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLK 317
+ +E+ N + GAF D L L L +++ KL I + L L+L
Sbjct: 149 MNCIEM--GGNPLENSGFEPGAF-DGLKLNYLRISEA-KLTGIPKDL---PETLNELHLD 201
Query: 318 ENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYK 376
N + L + +L + + N I
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQI-------------------------------- 229
Query: 377 SLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 436
I + + L LR L L +N+L +P L L L+ + +
Sbjct: 230 -----------------RMIENGSLSFLPTLRELHLDNNKLSRVP-AGLPDLKLLQVVYL 271
Query: 437 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP-KLKIIE 495
N + + F + + + ++L NP ++
Sbjct: 272 HTNNITKVGVNDFCPVGFGVKR-------------------AYYNGISLFNNPVPYWEVQ 312
Query: 496 EDALVGLPNLYHLNLKEN 513
+ + +
Sbjct: 313 PATFRCVTDRLAIQFGNY 330
Score = 149 bits (377), Expect = 2e-40
Identities = 60/305 (19%), Positives = 102/305 (33%), Gaps = 24/305 (7%)
Query: 28 SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPIG 86
+ L +P +P L L N I + L + L + I
Sbjct: 37 VVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK 96
Query: 87 GFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEI--FGQNRISRIDQACFEGLTALR 142
F P KL +L ++ N P + P + NRI ++ + F GL +
Sbjct: 97 AFSPLRKLQKLYISKNHLVEIPPNL------PSSLVELRIHDNRIRKVPKGVFSGLRNMN 150
Query: 143 ILYLDDNQLRSVPTPSFIYLGM-LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
+ + N L + + G+ L LR+ T + L+ L L +
Sbjct: 151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQA 207
Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
I S L L L N+++ I LS L L EL + N S + AG L L
Sbjct: 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLL 266
Query: 262 KRLEITGASNLTRVRKGAFAD------NLNLETLTLNKNP-KLKTIEEGALVGLPNLYHL 314
+ + + +N+T+V F ++L NP ++ + + +
Sbjct: 267 QVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325
Query: 315 NLKEN 319
Sbjct: 326 QFGNY 330
Score = 135 bits (343), Expect = 9e-36
Identities = 65/290 (22%), Positives = 107/290 (36%), Gaps = 24/290 (8%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
+L L +N + + F L L L + N + + + AF+ L +L L +
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN--GFSMLEAGCFK 256
L I N L L + DNR++ +P S L + +E+G N S E G F
Sbjct: 114 LVEIPPNLPS---SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 257 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNL 316
GL L L I+ A LT + K L L L+ N K++ IE L+ LY L L
Sbjct: 171 GLK-LNYLRISEA-KLTGIPKDLPE---TLNELHLDHN-KIQAIELEDLLRYSKLYRLGL 224
Query: 317 KENAFTSFSESMLA-WPELRTIDIAENPIEC---------GCNILWLREMLVRRNTSAVF 366
N L+ P LR + + N + +++L + + F
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284
Query: 367 CNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNR 416
C +K + L + FR ++ ++ + +
Sbjct: 285 CPVGFGVKRAYYNGI---SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 104 bits (262), Expect = 8e-25
Identities = 65/367 (17%), Positives = 111/367 (30%), Gaps = 104/367 (28%)
Query: 213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 272
LR + +D L+++P + +S T L L++ N S L FKGL
Sbjct: 35 LRVVQCSDLGLKAVPKE-ISPDTTL--LDLQNNDISELRKDDFKGLQ------------- 78
Query: 273 TRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWP 332
+L L L N K+ I E A L L L + +N ++
Sbjct: 79 ------------HLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--S 123
Query: 333 ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAG 392
L + I +N I
Sbjct: 124 SLVELRIHDNRI------------------------------------------------ 135
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQS--IPTKQLSKLTRLEELEIGQNGFSMLEAGCFK 450
+ F GL + + + N L++ L +L L I + + + +
Sbjct: 136 -RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPE 193
Query: 451 GLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 509
L+ L L+ N + + L L L N ++++IE +L LP L L+
Sbjct: 194 TLNEL-HLD----HNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELH 247
Query: 510 LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 569
L N + + L+ + + N I + FC +K
Sbjct: 248 LDNNKLSRVPAGLPDLKLLQVVYLHTNNI--------------TKVGVNDFCPVGFGVKR 293
Query: 570 KSLISLS 576
+S
Sbjct: 294 AYYNGIS 300
Score = 44.2 bits (105), Expect = 6e-05
Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 45 PSIQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK 103
+ RL L N+I+ +++ +L +L+ + L + +P G + L + L+ N
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNN 275
Query: 104 --HFPQQIVCSIISP------RRVEIFGQNRIS--RIDQACFEGLTALRILYLDDNQ 150
C + + +F N + + A F +T + + +
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFN-NPVPYWEVQPATFRCVTDRLAIQFGNYK 331
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 151 bits (383), Expect = 7e-39
Identities = 84/564 (14%), Positives = 171/564 (30%), Gaps = 82/564 (14%)
Query: 45 PSIQRLVLSTNRIKTVDSAIP---IYLSLQHVDLSHTTWLIIPIGGFEPQE----KLVEL 97
++ L T+ + + + Q L++
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406
Query: 98 QLNHNKHFPQQIVCSIISPRRVEIFG-QNRISRIDQACFEGLTALRILYLDDNQLRSVPT 156
+N N S IS + +I NRI+ I +A + LT L+I+Y ++
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNI 465
Query: 157 PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSL 216
+ + +++ L L+ ++L + L L+SL
Sbjct: 466 AVD-----WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520
Query: 217 VLTDNRLQSIP---------TKQLSKLTRLEELEIGQNGFSML-EAGCFKGLSYLKRLEI 266
+ NR S +++ +G N + + + L L+
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580
Query: 267 TGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE 326
+ + + AF N+ L L L+ N +++ I E + L N
Sbjct: 581 VH-NKVRHLE--AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN 636
Query: 327 SMLAW--PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAE 384
A + ++D + N I + N + I+ S
Sbjct: 637 IFNAKSVYVMGSVDFSYNKI------------------GSEGRNISCSMDDYKGINASTV 678
Query: 385 DLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP-------TKQLSKLTRLEELEIG 437
L + F S + +++L++N + SIP L +++
Sbjct: 679 TLS--YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736
Query: 438 QNGFSML-EAGCFKGLSYLKRLEI---------TGASNLTRVRKGAFADNLNL-ETLTLN 486
N + L + L YL +++ T N ++++ +
Sbjct: 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKA------FGIRHQRDAE 790
Query: 487 KNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG----- 541
N L+ + P+L L + N E + P+L +DIA+NP
Sbjct: 791 GNRILRQWPT-GITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSV 847
Query: 542 CNILWLREMLVRRNTSAVFCNSPA 565
C + ++ + + A
Sbjct: 848 CPYIEAGMYVLLYDKTQDIRGCDA 871
Score = 124 bits (312), Expect = 8e-30
Identities = 66/414 (15%), Positives = 129/414 (31%), Gaps = 59/414 (14%)
Query: 69 SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK--------HFPQQIVCSIISPRRVE 120
L V+L + + +L L + N+ ++ + +++
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551
Query: 121 IF--GQNRISRI-DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 177
IF G N + A + + L +L N++R + +F L +L++ N
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEE 609
Query: 178 LADGAFNGLGRLSALDLRGAGLTNISDNA-FRGLSGLRSLVLTDNRLQSIPTKQLS---- 232
+ + ++ L L I + + + + S+ + N++ S
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669
Query: 233 -KLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG------ASNLTRVRKGAFADNLN 285
K + + N F S + + ++ N + + G + +
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729
Query: 286 LETLTLNKNPKLKTI-EEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
L T+ L N KL ++ ++ LP L ++++ N F+SF L +L+ I
Sbjct: 730 LTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRD 788
Query: 345 ECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRG- 403
G IL R P SLI L I N R
Sbjct: 789 AEGNRIL--------RQWPTGITTCP------SLIQL-------------QIGSNDIRKV 821
Query: 404 ----LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLS 453
L L + DN SI + + + + G+
Sbjct: 822 DEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875
Score = 121 bits (306), Expect = 4e-29
Identities = 70/498 (14%), Positives = 145/498 (29%), Gaps = 93/498 (18%)
Query: 74 DLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQA 133
+ W P + ++ L L
Sbjct: 305 NKELDMWGDQPGVDLDNNGRVTGLSLAGFG-----------------------AKGRVPD 341
Query: 134 CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN-VFTTLADGAFNGLGRLSAL 192
LT L++L + + + + RL+
Sbjct: 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401
Query: 193 DLRGAGLTNISDNAFRGLSGLRSLVLTD-------NRLQSIPTKQLSKLTRLEELEIGQN 245
DL + + + + L D NR+ I K + +LT+L+ + +
Sbjct: 402 DLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFIS-KAIQRLTKLQIIYFANS 458
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGAL 305
F+ + + ++++ +L + L P + + + L
Sbjct: 459 PFTYDNIAVDWEDANSDYA------KQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FL 511
Query: 306 VGLPNLYHLNLKENAFTSFSESMLAW----------PELRTIDIAENPIECGCNILWLRE 355
LP L LN+ N S ++ W P+++ + N +E
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---------- 561
Query: 356 MLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDN 415
PA + ++ L L C + ++ AF L L L N
Sbjct: 562 ------------EFPASASLQKMVKL--GLLDCVHNKVRHLE--AFGTNVKLTDLKLDYN 605
Query: 416 RLQSIPTKQLSKLTRLEELEIGQNGFSML-EAGCFKGLSYLKRLEITGASNLTRVRKGAF 474
+++ IP + ++E L N + K + + ++ + + + +
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY-NKIGSEGRNIS 664
Query: 475 ADN-----LNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA----- 524
+N T+TL+ N +++ + + + L N TS E+ L
Sbjct: 665 CSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723
Query: 525 ---WPELRTIDIAENPIE 539
L TID+ N +
Sbjct: 724 YKNTYLLTTIDLRFNKLT 741
Score = 75.3 bits (185), Expect = 2e-14
Identities = 34/249 (13%), Positives = 69/249 (27%), Gaps = 27/249 (10%)
Query: 35 NLDVIPS----HSNPSIQRLVLSTNRIKTVDSAIPI------YLSLQHVDLSHTTWLIIP 84
L IP+ S + + S N+I + I ++ V LS+ P
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689
Query: 85 IGGFEPQEKLVELQLNHNK------HFPQQIVCSIISPRRVEI--FGQNRISRI-DQACF 135
F + + L++N + + + + + N+++ + D
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749
Query: 136 EGLTALRILYLDDNQLRSVPT-----PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 190
L L + + N S PT G+ + N L
Sbjct: 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809
Query: 191 ALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML 250
L + + + + L L + DN SI + + + +
Sbjct: 810 QLQIGSNDIRKVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866
Query: 251 EAGCFKGLS 259
G+
Sbjct: 867 RGCDALGIE 875
Score = 54.9 bits (132), Expect = 5e-08
Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 6/166 (3%)
Query: 395 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG--- 451
+ + L L + + +LT L+ L G + ++
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372
Query: 452 --LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 509
+S ++ I + + +L +N+NP++K I++D+ + L + N
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432
Query: 510 LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRN 555
L N T S+++ +L+ I A +P + +
Sbjct: 433 L-TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477
Score = 51.4 bits (123), Expect = 7e-07
Identities = 26/194 (13%), Positives = 50/194 (25%), Gaps = 47/194 (24%)
Query: 45 PSIQRLVLSTNRIKTVDSAIPI--YLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHN 102
+ + L N++ ++ L ++D+S+ + P +L + H
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSS-QLKAFGIRHQ 786
Query: 103 KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 162
+ NRI R +L L + N +R V
Sbjct: 787 R-----------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE------ 823
Query: 163 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNR 222
+L LD+ +I + VL ++
Sbjct: 824 ---------------------KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
Query: 223 LQSIPTKQLSKLTR 236
Q I + R
Sbjct: 863 TQDIRGCDALGIER 876
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 138 bits (350), Expect = 3e-37
Identities = 67/361 (18%), Positives = 118/361 (32%), Gaps = 103/361 (28%)
Query: 18 EPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSH 77
EP + + E N IP + S + L LS N ++
Sbjct: 1 EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH------------------ 42
Query: 78 TTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEG 137
+ F +L L L+ + I I+ ++
Sbjct: 43 -----LGSYSFFSFPELQVLDLSRCE-----------------------IQTIEDGAYQS 74
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
L+ L L L N ++S+ GAF+GL L L
Sbjct: 75 LSHLSTLILTGNPIQSLAL------------------------GAFSGLSSLQKLVAVET 110
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFK 256
L ++ + L L+ L + N +QS + S LT LE L++ N + +
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170
Query: 257 GLSYLKRLEIT---GASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYH 313
L + L ++ + + ++ GAF + L+ L L+ N +LK++ +G L +L
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTN-QLKSVPDGIFDRLTSLQK 228
Query: 314 LNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVR---RNTSAVFCNS 369
+ L NP +C C I +L L + + + C+
Sbjct: 229 IWL-----------------------HTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG 265
Query: 370 P 370
Sbjct: 266 S 266
Score = 98.1 bits (245), Expect = 6e-23
Identities = 48/206 (23%), Positives = 77/206 (37%), Gaps = 37/206 (17%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+ I D A++ LS L +L+LT N +QS+ S L+ L++L + + LE L
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 453 SYLKRLEITGASN-LTRV-RKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL----Y 506
LK L + A N + F++ NLE L L+ N K++ I L L +
Sbjct: 124 KTLKELNV--AHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180
Query: 507 HLNLKENAFTSFSESMLA------------------------WPELRTIDIAENPIECGC 542
L+L N L+ I + NP +C C
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240
Query: 543 N-ILWLREMLVR---RNTSAVFCNSP 564
I +L L + + + C+
Sbjct: 241 PRIDYLSRWLNKNSQKEQGSAKCSGS 266
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 142 bits (359), Expect = 9e-37
Identities = 56/431 (12%), Positives = 124/431 (28%), Gaps = 48/431 (11%)
Query: 69 SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRIS 128
+ ++ ++ + + EL L+ N +S
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-----------------------LS 47
Query: 129 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR 188
+I A T L +L L N L L L L + N L
Sbjct: 48 QISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQELL-----VGPS 100
Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
+ L ++ +S + + G +++ L +N++ + +R++ L++ N
Sbjct: 101 IETLHAANNNISRVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 249 MLEAG-CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG 307
+ L+ L + + V+ L+TL L+ N KL +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFA--KLKTLDLSSN-KLAFMGP-EFQS 212
Query: 308 LPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFC 367
+ ++L+ N +++ L D+ N CG + + V
Sbjct: 213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ---RVQTVAK 269
Query: 368 NSPAPLKYKSLISLSA-EDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 426
+ L ++ + ++ L L+ Q T++L
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329
Query: 427 K----LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLET 482
R E++ + + + LE L + L+
Sbjct: 330 CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK-KALDEQVSNGRRAHAELDG 388
Query: 483 LTLNKNPKLKI 493
++++
Sbjct: 389 TLQQAVGQIEL 399
Score = 113 bits (284), Expect = 6e-27
Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 75/412 (18%)
Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
+ +I + D+ L+ + LDL
Sbjct: 6 KQNGNRYKIEKVTDSSLKQAL------------------------ASLRQSAWNVKELDL 41
Query: 195 RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 254
G L+ IS + L L L+ N L L L+ L L++ N L
Sbjct: 42 SGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-- 97
Query: 255 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHL 314
++ L +N++RV + + L N K+ + + + +L
Sbjct: 98 ---GPSIETLHAAN-NNISRVSCSRGQ---GKKNIYLANN-KITMLRDLDEGCRSRVQYL 149
Query: 315 NLKENAFTSFSESMLA--WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAP 372
+LK N + + + LA L +++ N I +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY----------------------DVKGQ 187
Query: 373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 432
+ + L +L DL L + F+ +G+ + L +N+L I K L LE
Sbjct: 188 VVFAKLKTL---DLS--SNKLAFMGP-EFQSAAGVTWISLRNNKLVLIE-KALRFSQNLE 240
Query: 433 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 492
++ NGF F S +R++ + ++ + +
Sbjct: 241 HFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY-CCE 297
Query: 493 IIEEDALVGLPNLY-----HLNLKENAFTSFSESMLAWPELRTIDIAENPIE 539
+ L L L+ + + R ID +
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349
Score = 105 bits (264), Expect = 2e-24
Identities = 51/371 (13%), Positives = 106/371 (28%), Gaps = 93/371 (25%)
Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
+ + + +TD+ L+ ++EL++ N S + A +
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT------- 58
Query: 267 TGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE 326
LE L L+ N L + L L L L+L N
Sbjct: 59 ------------------KLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELLV 97
Query: 327 SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDL 386
P + T+ A N I
Sbjct: 98 G----PSIETLHAANNNI------------------------------------------ 111
Query: 387 GCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 446
+ +S + +G +++ L +N++ + +R++ L++ N +
Sbjct: 112 -------SRVSCSRGQGK---KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161
Query: 447 G-CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL 505
L+ L + + V+ L +TL L+ N KL + +
Sbjct: 162 AELAASSDTLEHLNLQYN-FIYDVKGQVVFAKL--KTLDLSSN-KLAFMG-PEFQSAAGV 216
Query: 506 YHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA 565
++L+ N +++ L D+ N CG + + V +
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ---RVQTVAKQTVK 273
Query: 566 PLKYKSLISLS 576
L ++ +
Sbjct: 274 KLTGQNEEECT 284
Score = 62.2 bits (151), Expect = 2e-10
Identities = 28/255 (10%), Positives = 64/255 (25%), Gaps = 7/255 (2%)
Query: 30 NLQEANLDVIPS--HSNPSIQRLVLSTNRIKTVD--SAIPIYLSLQHVDLSHTTWLIIPI 85
+L+ L +I + +++ L N +Q V L
Sbjct: 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279
Query: 86 GGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE---IFGQNRISRIDQACFEGLTALR 142
L + P +I+ +R E + GQ + + E R
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR 339
Query: 143 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNI 202
+ Q R+V + L L + G +
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL 399
Query: 203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLK 262
+ + +Q + + + ++ Q+ + L +
Sbjct: 400 QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNG 459
Query: 263 RLEITGASNLTRVRK 277
++ AS +++
Sbjct: 460 EADLALASANATLQE 474
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 136 bits (345), Expect = 6e-36
Identities = 46/254 (18%), Positives = 83/254 (32%), Gaps = 14/254 (5%)
Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQ-LRSVPTPSFIYLGMLAELRV-GLNVFTTLA 179
F ++ I + F G L + + N L + F L L E+R+ N +
Sbjct: 37 FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96
Query: 180 DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN-RLQSIPTKQLSKLT-RL 237
AF L L L + G+ ++ D L + DN + +I L+
Sbjct: 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156
Query: 238 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL 297
L + +NG + F G L L ++ +NL + F L +++ +
Sbjct: 157 VILWLNKNGIQEIHNSAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-I 214
Query: 298 KTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREML 357
++ L L L + ++ L + P C W R++
Sbjct: 215 HSLPSYGLENLKKLRARST--YNLKKLP-TLEKLVALMEASLT-YPSHCCAFANWRRQI- 269
Query: 358 VRRNTSAVFCNSPA 371
+ CN
Sbjct: 270 ---SELHPICNKSI 280
Score = 125 bits (316), Expect = 6e-32
Identities = 58/354 (16%), Positives = 98/354 (27%), Gaps = 87/354 (24%)
Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 273
R + ++++ IP+ EL +++ G F G L+++EI+ L
Sbjct: 12 RVFLCQESKVTEIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68
Query: 274 RVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWP 332
+ F++ L + + K L I A LPNL +L + + +
Sbjct: 69 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128
Query: 333 ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAG 392
+ +DI +N
Sbjct: 129 QKVLLDIQDNIN------------------------------------------------ 140
Query: 393 LTNISDNAFRGLSG-LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
+ I N+F GLS L L N +Q I + E N L F G
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200
Query: 452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 511
S L+I+ + + + + L + KL L L L +L
Sbjct: 201 ASGPVILDISR-TRIHSLPSYGLENLKKLRARSTYNLKKL-----PTLEKLVALMEASL- 253
Query: 512 ENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA 565
P C W R++ + CN
Sbjct: 254 -----------------------TYPSHCCAFANWRRQI----SELHPICNKSI 280
Score = 116 bits (292), Expect = 1e-28
Identities = 45/251 (17%), Positives = 91/251 (36%), Gaps = 12/251 (4%)
Query: 28 SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWL-IIPI 85
QE+ + IPS + L +++ + A + L+ +++S L +I
Sbjct: 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72
Query: 86 GGFEPQEKLVELQLNHN---KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALR 142
F KL E+++ + + ++ + + + I I +
Sbjct: 73 DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKV 131
Query: 143 ILYLDDN-QLRSVPTPSFIYLGM-LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
+L + DN + ++ SF+ L L + N + + AFNG L
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE 191
Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
+ ++ F G SG L ++ R+ S+P+ L L +L + + L
Sbjct: 192 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK----KLPTLEKLVA 247
Query: 261 LKRLEITGASN 271
L +T S+
Sbjct: 248 LMEASLTYPSH 258
Score = 89.1 bits (221), Expect = 2e-19
Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 12/182 (6%)
Query: 382 SAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 441
S C + +T I + R L +L+ I S LE++EI QN
Sbjct: 10 SNRVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66
Query: 442 -SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALV 500
++EA F L L + I A+NL + AF + NL+ L ++ +K + + +
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKI 125
Query: 501 GLPNLYHLNLKENAF-TSFSESMLAW--PELRTIDIAENPIEC----GCNILWLREMLVR 553
L++++N + + E + + +N I+ N L E+ +
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185
Query: 554 RN 555
N
Sbjct: 186 DN 187
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 133 bits (337), Expect = 2e-35
Identities = 63/236 (26%), Positives = 95/236 (40%), Gaps = 12/236 (5%)
Query: 133 AC-FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 191
C + + + D L ++P L + N+ T + RL+
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQ 59
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
L+L A LT + L L +L L+ N+LQS+P L L L++ N + L
Sbjct: 60 LNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLP 116
Query: 252 AGCFKGLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPN 310
G +GL L+ L + N L + G LE L+L N L + G L GL N
Sbjct: 117 LGALRGLGELQELYL--KGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLEN 173
Query: 311 LYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF 366
L L L+EN+ + + L + NP C C IL+ R L + N V+
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAENVY 228
Score = 106 bits (266), Expect = 1e-25
Identities = 47/256 (18%), Positives = 83/256 (32%), Gaps = 54/256 (21%)
Query: 40 PSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQL 99
S + + + +P + LS + P +L +L L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 100 NHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 159
+ + Q+ ++ +++ N++ + + L AL +L + N+L
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSH-NQLQSLPLL-GQTLPALTVLDVSFNRL-------- 112
Query: 160 IYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLT 219
T+L GA GLG L L L+G L + L L L
Sbjct: 113 ----------------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 220 DNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGA 279
+N L +P L+ L L+ L + +N +L + KG
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQEN-------------------------SLYTIPKGF 191
Query: 280 FADNLNLETLTLNKNP 295
F + L L+ NP
Sbjct: 192 F-GSHLLPFAFLHGNP 206
Score = 100 bits (252), Expect = 6e-24
Identities = 50/169 (29%), Positives = 72/169 (42%), Gaps = 8/169 (4%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
LT + L L +L L+ N+LQS+P L L L++ N + L G +GL
Sbjct: 67 LTKLQ--VDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 453 SYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 511
L+ L + N L + G LE L+L N L + L GL NL L L+
Sbjct: 124 GELQELYL--KGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQ 180
Query: 512 ENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF 560
EN+ + + L + NP C C IL+ R L + N V+
Sbjct: 181 ENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAENVY 228
Score = 95.2 bits (237), Expect = 7e-22
Identities = 50/283 (17%), Positives = 85/283 (30%), Gaps = 82/283 (28%)
Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
++ + L ++P L + +N +
Sbjct: 6 VSKVASHLEVNCDKRNLTALPP---DLPKDTTILHLSENLLYTFSLATLMPYT------- 55
Query: 267 TGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE 326
L L L++ +L ++ LP L L+L N S
Sbjct: 56 ------------------RLTQLNLDRA-ELTKLQ--VDGTLPVLGTLDLSHNQLQSLPL 94
Query: 327 SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDL 386
P L +D++ N +
Sbjct: 95 LGQTLPALTVLDVSFNRL------------------------------------------ 112
Query: 387 GCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 446
T++ A RGL L+ L L N L+++P L+ +LE+L + N + L A
Sbjct: 113 -------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165
Query: 447 GCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 489
G GL L L + ++L + KG F + L L+ NP
Sbjct: 166 GLLNGLENLDTLLLQE-NSLYTIPKGFF-GSHLLPFAFLHGNP 206
Score = 51.6 bits (124), Expect = 3e-07
Identities = 25/159 (15%), Positives = 46/159 (28%), Gaps = 25/159 (15%)
Query: 401 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 460
++ + L ++P L + +N + L +L +
Sbjct: 6 VSKVASHLEVNCDKRNLTALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 461 -----------TGASNLTRVR---------KGAFADNLNLETLTLNKNPKLKIIEEDALV 500
L + L L ++ N +L + AL
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALR 121
Query: 501 GLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPI 538
GL L L LK N + +L P+L + +A N +
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 136 bits (345), Expect = 9e-35
Identities = 71/406 (17%), Positives = 140/406 (34%), Gaps = 25/406 (6%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
IL + N + + T + L L L + N L F L LDL
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIP-TKQLSKLTRLEELEIGQNGFSMLEAGCFKG 257
L IS L+ L L+ N ++P K+ +++L+ L +
Sbjct: 81 LVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137
Query: 258 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN--KNPKLKTIEEGALVGLPNLYHLN 315
L+ K L + G + + + N E+L + N + I + ++ + NL N
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQ-DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196
Query: 316 LKENAFTSFSESMLAWP-ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLK 374
+K + L+ +L+T N W F +
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS-----------FIRILQLVW 245
Query: 375 YKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 434
+ ++ S ++ G D + L L + + + + +
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305
Query: 435 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKII 494
+G M+ C +S L+ + + LT LETL L N +LK +
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSN-NLLTDTVFENCGHLTELETLILQMN-QLKEL 363
Query: 495 EEDALV--GLPNLYHLNLKENAFTSFS-ESMLAWPE-LRTIDIAEN 536
+ A + + +L L++ +N+ + + +W + L +++++ N
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409
Score = 134 bits (340), Expect = 4e-34
Identities = 98/562 (17%), Positives = 180/562 (32%), Gaps = 109/562 (19%)
Query: 28 SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
+ + L +P + L +S N I L D+ +
Sbjct: 4 LVDRSKNGLIHVPKDLSQKTTILNISQNYIS----------ELWTSDILSLS-------- 45
Query: 88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
KL L ++HN+ I +D + F+ L L L
Sbjct: 46 -----KLRILIISHNR-----------------------IQYLDISVFKFNQELEYLDLS 77
Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNISDNA 206
N+L + L L + N F L F + +L L L L S
Sbjct: 78 HNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134
Query: 207 FRGLSGLR-SLVLTDNRLQSIPTKQLSKL--TRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
L+ + LVL + + + L L + F + K ++ L+
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194
Query: 264 LEITG----------ASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYH 313
I S L +++ NL L + N I LV +++
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN---SFIRILQLVWHTTVWY 251
Query: 314 LNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPL 373
++ + R D + L+ + + + S VF + +
Sbjct: 252 FSISNVKLQG-------QLDFRDFDYSGTS---------LKALSIHQVVSDVFGFPQSYI 295
Query: 374 KYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEE 433
Y+ +++ ++ +G + +S L ++N L + LT LE
Sbjct: 296 -YEIFSNMNIKNFTV--SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352
Query: 434 LEIGQNGFSMLE--AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN--- 488
L + N L A + L++L+I+ S +KG + +L +L ++ N
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412
Query: 489 --------PKLKIIE---------EDALVGLPNLYHLNLKENAFTSFSESMLAW-PELRT 530
P++K+++ +V L L LN+ N S + + L+
Sbjct: 413 DTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472
Query: 531 IDIAENPIECGCN-ILWLREML 551
I + NP +C C I +L L
Sbjct: 473 IWLHTNPWDCSCPRIDYLSRWL 494
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 130 bits (329), Expect = 1e-33
Identities = 60/254 (23%), Positives = 91/254 (35%), Gaps = 45/254 (17%)
Query: 148 DNQLRSVPT--PSFIYLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLRGAGLTNISD 204
QL +VP PS+ A L + N + L A+ L L +L L L IS
Sbjct: 27 KQQLPNVPQSLPSYT-----ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS 81
Query: 205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 264
AF + LR L L+ N L ++ S L LE L + N +++ F+ ++ L++L
Sbjct: 82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141
Query: 265 EITGASNLTRVRKGAFADNLN---LETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAF 321
++ ++R D L L L+ N KLK + L LP
Sbjct: 142 YLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVK-------- 191
Query: 322 TSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF-------CNSPAPLK 374
+ + NP+EC C + L R S+V C L
Sbjct: 192 -------------NGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLH 238
Query: 375 YKSLISLSAEDLGC 388
S + C
Sbjct: 239 NI----FSLDFFNC 248
Score = 114 bits (286), Expect = 6e-28
Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 16/194 (8%)
Query: 393 LTNI-SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
L+ + ++ L+ L SL+L+ N L I ++ + L L++ N L+ F
Sbjct: 51 LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110
Query: 452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVG---LPNLYHL 508
L L+ L + +++ V + AF D L+ L L++N ++ + + LP L L
Sbjct: 111 LQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLL 168
Query: 509 NLKENAFTSFSESM---LAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF----- 560
+L N + L + + NP+EC C + L R S+V
Sbjct: 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQED 228
Query: 561 --CNSPAPLKYKSL 572
C L
Sbjct: 229 LYCMHSKKLHNIFS 242
Score = 33.3 bits (76), Expect = 0.23
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 465 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 524
L V + + L L+ N ++ E L NL+ L L N S
Sbjct: 29 QLPNVPQSLPSY---TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV 85
Query: 525 W-PELRTIDIAENPIE 539
P LR +D++ N +
Sbjct: 86 PVPNLRYLDLSSNHLH 101
Score = 31.0 bits (70), Expect = 1.1
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 30 NLQEANLDVIPSHS---NPSIQRLVLSTNRIKTVD----SAIPIYLSLQHVDLSHTTWLI 82
L ++ V+ ++ +Q+L LS N+I L +DLS
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177
Query: 83 IPIGGFEPQEKLVE--LQLNHN 102
+P+ + V+ L L++N
Sbjct: 178 LPLTDLQKLPAWVKNGLYLHNN 199
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 123 bits (311), Expect = 2e-31
Identities = 43/290 (14%), Positives = 91/290 (31%), Gaps = 39/290 (13%)
Query: 69 SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRIS 128
+ ++ ++ + + EL L+ N +S
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-----------------------LS 47
Query: 129 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR 188
+I A T L +L L N L L L L + N L
Sbjct: 48 QISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQELL-----VGPS 100
Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
+ L ++ +S + + G +++ L +N++ + +R++ L++ N
Sbjct: 101 IETLHAANNNISRVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 249 MLEAGCFKG-LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG 307
+ L+ L + + V+ L+TL L+ N KL +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV--FAKLKTLDLSSN-KLAFMGP-EFQS 212
Query: 308 LPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREML 357
+ ++L+ N +++ L D+ N CG + +
Sbjct: 213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262
Score = 112 bits (281), Expect = 2e-27
Identities = 55/370 (14%), Positives = 99/370 (26%), Gaps = 114/370 (30%)
Query: 183 FNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 242
R + + L + + ++ L L+ N L I L+ T+LE L +
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 243 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEE 302
N + LS L TL LN N ++ +
Sbjct: 66 SSNVLYETLD--LESLS-------------------------TLRTLDLNNN-YVQELLV 97
Query: 303 GALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNT 362
P++ L+ N + S S + I +A N I
Sbjct: 98 -----GPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKI------------------ 132
Query: 363 SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT 422
T + D S ++ L L N + ++
Sbjct: 133 -------------------------------TMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161
Query: 423 KQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE 481
+L + LE L + N ++ L+
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFA---------------------------KLK 194
Query: 482 TLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 541
TL L+ N KL + + ++L+ N +++ L D+ N CG
Sbjct: 195 TLDLSSN-KLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252
Query: 542 CNILWLREML 551
+ +
Sbjct: 253 TLRDFFSKNQ 262
Score = 110 bits (278), Expect = 4e-27
Identities = 53/404 (13%), Positives = 110/404 (27%), Gaps = 98/404 (24%)
Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
+ +I + D+ L+ + LDL
Sbjct: 6 KQNGNRYKIEKVTDSSLKQAL------------------------ASLRQSAWNVKELDL 41
Query: 195 RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 254
G L+ IS + L L L+ N L L L+ L L++ N L
Sbjct: 42 SGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-- 97
Query: 255 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHL 314
++ L +N++RV + + L N K+ + + + +L
Sbjct: 98 ---GPSIETLHAAN-NNISRVSCSRGQ---GKKNIYLANN-KITMLRDLDEGCRSRVQYL 149
Query: 315 NLKENAFTSFSESMLA--WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAP 372
+LK N + + + LA L +++ N I
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFI---------------------------- 181
Query: 373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 432
++ + L++L L+ N+L + + +
Sbjct: 182 ---------------------YDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVT 217
Query: 433 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 492
+ + N ++E + L+ ++ G + F+ N ++T+ KL
Sbjct: 218 WISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL- 275
Query: 493 IIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAEN 536
+ R I + +
Sbjct: 276 --TGQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHH 313
Score = 92.0 bits (229), Expect = 1e-20
Identities = 43/324 (13%), Positives = 97/324 (29%), Gaps = 61/324 (18%)
Query: 30 NLQEANLDVIPSHS---NPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIG 86
+L L I + ++ L LS+N + + +L+ +DL++ +
Sbjct: 40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLRTLDLNNN-----YVQ 93
Query: 87 GFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF--------GQNRISRIDQACFEGL 138
+ L +N IS N+I+ +
Sbjct: 94 ELLVGPSIETLHAANNN----------ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCR 143
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
+ ++ L L N++ +V L L+L+
Sbjct: 144 SRVQYLDLKLNEIDTVNFAEL-----------------------AASSDTLEHLNLQYNF 180
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
+ ++ + L++L L+ N+L + + + + + N ++E +
Sbjct: 181 IYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKA-LRFS 236
Query: 259 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKE 318
L+ ++ G + F+ N ++T+ KL T + +P L H
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL-TGQNEEECTVPTLGHYG--A 293
Query: 319 NAFTSFSESMLAWPELRTIDIAEN 342
R I + +
Sbjct: 294 YCCEDLPAPFA----DRLIALGHH 313
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 119 bits (301), Expect = 4e-31
Identities = 60/228 (26%), Positives = 91/228 (39%), Gaps = 52/228 (22%)
Query: 167 ELRVGLNVFTTL-ADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQS 225
ELR+ N FT L A G F L +L ++ +T+I + AF G SG+ ++LT NRL++
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 226 IPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN 285
+ K L L+ L + N + + F GLS +
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-------------------------S 130
Query: 286 LETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 345
+ L+L N ++ T+ GA L +L LNL NP
Sbjct: 131 VRLLSLYDN-QITTVAPGAFDTLHSLSTLNL-----------------------LANPFN 166
Query: 346 CGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGCAGA 391
C C + WL E L ++ T C P LK + ++ +D C A
Sbjct: 167 CNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDA 214
Score = 101 bits (254), Expect = 9e-25
Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 30/192 (15%)
Query: 393 LTNISDNA-FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
T + F+ L LR + ++N++ I + + E+ + N ++ FKG
Sbjct: 44 FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG 103
Query: 452 LSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 510
L LK L + + +T V +F L ++ L+L N ++ + A L +L LNL
Sbjct: 104 LESLKTLMLRS-NRITCVGNDSF-IGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNL 160
Query: 511 KENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLK 568
NP C C + WL E L ++ T C P LK
Sbjct: 161 -----------------------LANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLK 197
Query: 569 YKSLISLSAEDL 580
+ ++ +D
Sbjct: 198 EIPIQDVAIQDF 209
Score = 90.1 bits (224), Expect = 9e-21
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 125 NRISRID-QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
N + ++ F+ L LR + +N++ + +F + E+ + N + F
Sbjct: 42 NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMF 101
Query: 184 NGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
GL L L LR +T + +++F GLS +R L L DN++ ++ L L L +
Sbjct: 102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161
Query: 244 QN 245
N
Sbjct: 162 AN 163
Score = 40.4 bits (95), Expect = 7e-04
Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 36/158 (22%)
Query: 28 SCNLQEAN-----LDVIPSHSNPSIQRLVLSTNRIKTVDSAIPI--YLSLQHVDLSHTTW 80
C + L+ IP H L L+ N +++ L+ ++ S+
Sbjct: 10 RCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI 69
Query: 81 LIIPIGGFEPQEKLVELQLNHN--KHFPQ-----------------QIVCSIISP----- 116
I G FE + E+ L N ++ +I C +
Sbjct: 70 TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC--VGNDSFIG 127
Query: 117 -RRVEIFG--QNRISRIDQACFEGLTALRILYLDDNQL 151
V + N+I+ + F+ L +L L L N
Sbjct: 128 LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 119 bits (300), Expect = 5e-31
Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 51/226 (22%)
Query: 167 ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI 226
E+R+ N + GAF+ +L +DL ++ ++ +AF+GL L SLVL N++ +
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 227 PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNL 286
P L L+ L + N + +R AF D NL
Sbjct: 96 PKSLFEGLFSLQLLLLNAN-------------------------KINCLRVDAFQDLHNL 130
Query: 287 ETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC 346
L+L N KL+TI +G L + ++L A+NP C
Sbjct: 131 NLLSLYDN-KLQTIAKGTFSPLRAIQTMHL-----------------------AQNPFIC 166
Query: 347 GCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSAEDLGCAG 390
C++ WL + L TS C SP L K + + ++ C+
Sbjct: 167 DCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCSA 212
Score = 108 bits (273), Expect = 3e-27
Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 27/190 (14%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
+ I AF LR + L++N++ + L L L + N + L F+GL
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103
Query: 453 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 512
L+ L + A+ + +R AF D NL L+L N KL+ I + L + ++L
Sbjct: 104 FSLQLLLL-NANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHL-- 159
Query: 513 NAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYK 570
A+NP C C++ WL + L TS C SP L K
Sbjct: 160 ---------------------AQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANK 198
Query: 571 SLISLSAEDL 580
+ + ++
Sbjct: 199 RIGQIKSKKF 208
Score = 97.4 bits (243), Expect = 3e-23
Identities = 38/122 (31%), Positives = 54/122 (44%)
Query: 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
QN I I F LR + L +NQ+ + +F L L L + N T L F
Sbjct: 41 QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100
Query: 184 NGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
GL L L L + + +AF+ L L L L DN+LQ+I S L ++ + +
Sbjct: 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160
Query: 244 QN 245
QN
Sbjct: 161 QN 162
Score = 32.3 bits (74), Expect = 0.27
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 30 NLQEANLDVIPS---HSNPSIQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPI 85
L + +P S+Q L+L+ N+I + L +L + L I
Sbjct: 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145
Query: 86 GGFEPQEKLVELQLNHN 102
G F P + + L N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 125 bits (316), Expect = 8e-31
Identities = 69/404 (17%), Positives = 123/404 (30%), Gaps = 23/404 (5%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
+ L L N + + P +L L LR+ N +L F L LD+
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIP-TKQLSKLTRLEELEIGQNGFSMLEAGCFKG 257
L NIS ++ LR L L+ N +P K+ LT+L L + F L+
Sbjct: 112 LQNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168
Query: 258 LSYLKRLEITGASNLTRVRKGAFAD-NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNL 316
L L + ++ + N + L + N ++ L +L N+
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228
Query: 317 KENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYK 376
K N R P + + T +
Sbjct: 229 KLNDENCQRLMTFLSELTR------GPTLLNVTLQHI------ETTWKCSVKLFQFFWPR 276
Query: 377 SLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 436
+ L+ +L + L L + + S + +
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336
Query: 437 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE 496
+ + C S L T + T + L+TL L +N LK +
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQ-NVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFK 394
Query: 497 --DALVGLPNLYHLNLKENAFTSFSESML-AWPE-LRTIDIAEN 536
+ +L L++ N+ S + AW E + ++++ N
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Score = 116 bits (293), Expect = 8e-28
Identities = 100/569 (17%), Positives = 184/569 (32%), Gaps = 110/569 (19%)
Query: 28 SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
+ NL +P P + L LS N I L+ D+S +
Sbjct: 35 MVDYSNRNLTHVPKDLPPRTKALSLSQNSIS----------ELRMPDISFLS-------- 76
Query: 88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
+L L+L+HN RI +D F L L +
Sbjct: 77 -----ELRVLRLSHN-----------------------RIRSLDFHVFLFNQDLEYLDVS 108
Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA-FNGLGRLSALDLRGAGLTNISDNA 206
N+L+++ + L L + N F L F L +L+ L L A +
Sbjct: 109 HNRLQNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165
Query: 207 FRGLS-GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 265
L L L ++ T+ L L + + S+ ++ L L+
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224
Query: 266 ITG-----------ASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHL 314
++ + L+ + +G N+ L+ + +K + + +L
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ---FFWPRPVEYL 281
Query: 315 NLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLK 374
N+ T + +E L+ +++ + VF
Sbjct: 282 NIYNLTITER-------IDREEFTYSETA---------LKSLMIEHVKNQVF-LFSKEAL 324
Query: 375 YKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 434
Y ++ + L + I S L T N + S L RL+ L
Sbjct: 325 YSVFAEMNIKMLS--ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382
Query: 435 EIGQNGFSMLE--AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN---- 488
+ +NG A K +S L+ L+++ S + A ++ L L+ N
Sbjct: 383 ILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442
Query: 489 -------PKLKIIE---------EDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTI 531
PK+K+++ + L L LN+ N S + + L+ I
Sbjct: 443 SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502
Query: 532 DIAENPIECGCN-ILWLREMLVRRNTSAV 559
+ +NP +C C I +L E + +++ V
Sbjct: 503 WLHDNPWDCTCPGIRYLSEW-INKHSGVV 530
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 115 bits (291), Expect = 1e-29
Identities = 45/198 (22%), Positives = 89/198 (44%), Gaps = 6/198 (3%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV-FTTLADGAFNGLGRLSALDLRG 196
+ + L L + LR++P+ +F L ++ + V ++V L +F L +++ +++R
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 197 A-GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ-LSKLTRLEELEIGQNGF-SMLEAG 253
LT I +A + L L+ L + + L+ P + LEI N + + +
Sbjct: 90 TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149
Query: 254 CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPN-LY 312
F+GL + T V+ AF + L+ + LNKN L I++ A G+ +
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208
Query: 313 HLNLKENAFTSFSESMLA 330
L++ + + T+ L
Sbjct: 209 LLDVSQTSVTALPSKGLE 226
Score = 114 bits (287), Expect = 6e-29
Identities = 41/199 (20%), Positives = 71/199 (35%), Gaps = 8/199 (4%)
Query: 124 QNRISRIDQACFEGLTALRILYLDDN-QLRSVPTPSFIYLGMLAELRVGLN-VFTTLADG 181
+ + I F L + +Y+ + L+ + + SF L + + + T +
Sbjct: 40 ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99
Query: 182 AFNGLGRLSALDLRGAGLTNISD-NAFRGLSGLRSLVLTDN-RLQSIPTKQLSKLTR-LE 238
A L L L + GL D L +TDN + SIP L
Sbjct: 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159
Query: 239 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN-LETLTLNKNPKL 297
L++ NGF+ ++ F G L + + LT + K AF + L +++ +
Sbjct: 160 TLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SV 217
Query: 298 KTIEEGALVGLPNLYHLNL 316
+ L L L N
Sbjct: 218 TALPSKGLEHLKELIARNT 236
Score = 112 bits (283), Expect = 2e-28
Identities = 47/246 (19%), Positives = 93/246 (37%), Gaps = 31/246 (12%)
Query: 26 DPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWL-II 83
+ + ++ IPS PS Q L L ++T+ S A ++ + +S L +
Sbjct: 13 EEDFRVTCKDIQRIPSLP-PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71
Query: 84 PIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRI 143
F K+ +++ + ++ ++ ID + L L+
Sbjct: 72 ESHSFYNLSKVTHIEIRNTRN----------------------LTYIDPDALKELPLLKF 109
Query: 144 LYLDDNQLRSVPTPSFIY-LGMLAELRVGLNVF-TTLADGAFNGLGRLSA-LDLRGAGLT 200
L + + L+ P + +Y + L + N + T++ AF GL + L L G T
Sbjct: 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169
Query: 201 NISDNAFRGLSGLRSLVLTDNR-LQSIPTKQLSKL-TRLEELEIGQNGFSMLEAGCFKGL 258
++ AF G L ++ L N+ L I + + L++ Q + L + + L
Sbjct: 170 SVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL 228
Query: 259 SYLKRL 264
L
Sbjct: 229 KELIAR 234
Score = 107 bits (269), Expect = 1e-26
Identities = 40/252 (15%), Positives = 80/252 (31%), Gaps = 32/252 (12%)
Query: 211 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 270
+T +Q IP S + L++ + + + F L + R+ ++
Sbjct: 11 HQEEDFRVTCKDIQRIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66
Query: 271 NLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA 330
L ++ +F + + + + L I+ AL LP L L + F +
Sbjct: 67 TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126
Query: 331 W--PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGC 388
+ ++I +NP + + F L
Sbjct: 127 YSTDIFFILEITDNP-----YMTSIPV--------NAFQGLCNET----------LTLKL 163
Query: 389 AGAGLTNISDNAFRGLSGLRSLVLTDNR-LQSIPTKQLSKL-TRLEELEIGQNGFSMLEA 446
G T++ AF G L ++ L N+ L I + + L++ Q + L +
Sbjct: 164 YNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222
Query: 447 GCFKGLSYLKRL 458
+ L L
Sbjct: 223 KGLEHLKELIAR 234
Score = 107 bits (268), Expect = 2e-26
Identities = 51/295 (17%), Positives = 87/295 (29%), Gaps = 80/295 (27%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG-AGLTNI 202
+ ++ +P+ L++ T+ AF+ L +S + + L +
Sbjct: 16 FRVTCKDIQRIPSLP----PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71
Query: 203 SDNAFRGLSGLRSLVLTDNR-LQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
++F LS + + + + R L I L +L L+ L I G M
Sbjct: 72 ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK------ 125
Query: 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPN-LYHLNLKENA 320
L + NP + +I A GL N L L N
Sbjct: 126 ------------------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167
Query: 321 FTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLIS 380
FTS +L + + +N
Sbjct: 168 FTSVQGYAFNGTKLDAVYLNKNK------------------------------------- 190
Query: 381 LSAEDLGCAGAGLTNISDNAFRGL-SGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 434
LT I +AF G+ SG L ++ + ++P+K L L L
Sbjct: 191 -----------YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234
Score = 87.8 bits (218), Expect = 8e-20
Identities = 46/252 (18%), Positives = 85/252 (33%), Gaps = 69/252 (27%)
Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN---------AFTSFSESMLAWPELR 335
+ +TL L + L+TI A LPN+ + + + +F + ++
Sbjct: 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL-------SKVT 83
Query: 336 TIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTN 395
I+I LT
Sbjct: 84 HIEIRNTRN------------------------------------------------LTY 95
Query: 396 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQ-LSKLTRLEELEIGQNGF-SMLEAGCFKGLS 453
I +A + L L+ L + + L+ P + LEI N + + + F+GL
Sbjct: 96 IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155
Query: 454 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN-LYHLNLKE 512
+ T V+ AF + L+ + LNKN L +I++DA G+ + L++ +
Sbjct: 156 NETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214
Query: 513 NAFTSFSESMLA 524
+ T+ L
Sbjct: 215 TSVTALPSKGLE 226
Score = 80.4 bits (199), Expect = 3e-17
Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)
Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG-FSMLEA 446
+ I ++L L + L++IP+ S L + + + + LE+
Sbjct: 18 VTCKDIQRIPS----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES 73
Query: 447 GCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN------------------ 488
F LS + +EI NLT + A + L+ L +
Sbjct: 74 HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFF 133
Query: 489 -------PKLKIIEEDALVGLPN-LYHLNLKENAFTSFSESMLAWPELRTIDIAENP 537
P + I +A GL N L L N FTS +L + + +N
Sbjct: 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK 190
Score = 79.3 bits (196), Expect = 8e-17
Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 6/135 (4%)
Query: 405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 464
+T +Q IP S + L++ + + + F L + R+ ++
Sbjct: 11 HQEEDFRVTCKDIQRIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66
Query: 465 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 524
L ++ +F + + + + L I+ DAL LP L L + F +
Sbjct: 67 TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126
Query: 525 W--PELRTIDIAENP 537
+ ++I +NP
Sbjct: 127 YSTDIFFILEITDNP 141
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 117 bits (296), Expect = 3e-29
Identities = 86/417 (20%), Positives = 154/417 (36%), Gaps = 82/417 (19%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
I++I L L + V T
Sbjct: 10 APINQIFP--DADLAEGIRAVLQKASVTDVVT--------------------------QE 41
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 244
L ++ L + G + +I L+ L L L N++ I LS L +L L IG
Sbjct: 42 ELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGT 97
Query: 245 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGA 304
N + + A + L+ L+ L + N++ + A+ + +L L N L +
Sbjct: 98 NKITDISA--LQNLTNLRELYLNE-DNISDIS--PLANLTKMYSLNLGANHNLSDLSP-- 150
Query: 305 LVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTS 363
L + L +L + E+ + + L +L ++ + N IE +
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTPIANL--TDLYSLSLNYNQIEDISPL------------- 195
Query: 364 AVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTK 423
SL SL +T+I+ ++ L SL + +N++ +
Sbjct: 196 ------------ASLTSL--HYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLSP- 238
Query: 424 QLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETL 483
L+ L++L LEIG N S + A K L+ LK L + + ++ + + L +L
Sbjct: 239 -LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGS-NQISDI--SVLNNLSQLNSL 292
Query: 484 TLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIE 539
LN N +L + + + GL NL L L +N T + L ++ + D A I+
Sbjct: 293 FLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL--SKMDSADFANQVIK 346
Score = 109 bits (276), Expect = 1e-26
Identities = 68/403 (16%), Positives = 136/403 (33%), Gaps = 73/403 (18%)
Query: 37 DVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVE 96
+ P R VL + V S+ + ++ + I G E L
Sbjct: 14 QIFPDADLAEGIRAVLQKASVTDV-VTQEELESITKLVVAGE--KVASIQGIEYLTNLEY 70
Query: 97 LQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT 156
L LN N +I+ I L L LY+ N++ +
Sbjct: 71 LNLNGN-----------------------QITDISP--LSNLVKLTNLYIGTNKITDIS- 104
Query: 157 PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSL 216
+ L L EL + + + ++ L ++ +L+L + ++GL L
Sbjct: 105 -ALQNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYL 160
Query: 217 VLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVR 276
+T+++++ + ++ LT L L + N + L+ L + +T +
Sbjct: 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA-YVNQITDIT 215
Query: 277 KGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRT 336
A+ L +L + N K+ + L L L L + N + + ++ +L+
Sbjct: 216 --PVANMTRLNSLKIGNN-KITDLS--PLANLSQLTWLEIGTNQISDIN-AVKDLTKLKM 269
Query: 337 IDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNI 396
+++ N I + L +L L L L N
Sbjct: 270 LNVGSNQIS-----------------------DISVLN--NLSQL--NSLFLNNNQLGNE 302
Query: 397 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439
GL+ L +L L+ N + I L+ L++++ +
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343
Score = 108 bits (273), Expect = 4e-26
Identities = 76/377 (20%), Positives = 132/377 (35%), Gaps = 62/377 (16%)
Query: 92 EKLVELQLNHNKHFPQQIVCSIISPRRVE-----IFGQNRISRIDQACFEGLTALRILYL 146
+ + L V +++ +E + +++ I E LT L L L
Sbjct: 22 AEGIRAVLQKAS------VTDVVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNL 73
Query: 147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206
+ NQ+ + L L L +G N T ++ A L L L L +++IS
Sbjct: 74 NGNQITDI--SPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDIS--P 127
Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
L+ + SL L N S LS +T L L + ++ + L+ L L +
Sbjct: 128 LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184
Query: 267 TGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE 326
+ + + A +L T N ++ I + + L L + N T S
Sbjct: 185 -NYNQIEDI--SPLASLTSLHYFTAYVN-QITDIT--PVANMTRLNSLKIGNNKITDLSP 238
Query: 327 -SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAED 385
+ L +L ++I N I + K L L +
Sbjct: 239 LANL--SQLTWLEIGTNQIS-----------------------DINAV--KDLTKL--KM 269
Query: 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
L +++IS LS L SL L +N+L + + + LT L L + QN + +
Sbjct: 270 LNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327
Query: 446 AGCFKGLSYLKRLEITG 462
LS + +
Sbjct: 328 P--LASLSKMDSADFAN 342
Score = 86.4 bits (215), Expect = 1e-18
Identities = 47/274 (17%), Positives = 105/274 (38%), Gaps = 31/274 (11%)
Query: 30 NLQEANLDVIPSHSN-PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
+ + I + N +++ L L+ + I + S + + ++L + +
Sbjct: 94 YIGTNKITDISALQNLTNLRELYLNEDNISDI-SPLANLTKMYSLNLGANH-NLSDLSPL 151
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISP-------RRVEIFGQNRISRIDQACFEGLTAL 141
L L + +K ++P + + N+I I LT+L
Sbjct: 152 SNMTGLNYLTVTESK-------VKDVTPIANLTDLYSLSL-NYNQIEDISP--LASLTSL 201
Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
NQ+ + + L L++G N T L+ L +L+ L++ +++
Sbjct: 202 HYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISD 257
Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
I+ A + L+ L+ L + N++ I L+ L++L L + N + GL+ L
Sbjct: 258 IN--AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313
Query: 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 295
L ++ +++T +R A +++
Sbjct: 314 TTLFLSQ-NHITDIR--PLASLSKMDSADFANQV 344
Score = 66.4 bits (163), Expect = 6e-12
Identities = 56/329 (17%), Positives = 101/329 (30%), Gaps = 96/329 (29%)
Query: 212 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN 271
G +L + I + L + + +T
Sbjct: 1 GAATLATLPAPINQIFP--DADLAEGIRAVLQKA-------------------SVTDVVT 39
Query: 272 LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLA 330
+ ++ L + K+ +I+ + L NL +LNL N T S S L
Sbjct: 40 QEELE--------SITKLVVAGE-KVASIQ--GIEYLTNLEYLNLNGNQITDISPLSNL- 87
Query: 331 WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAG 390
+L + I N I + L+ +L +L +L
Sbjct: 88 -VKLTNLYIGTNKIT-----------------------DISALQ--NLTNL--RELYLNE 119
Query: 391 AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK 450
+++IS L+ + SL L N S LS +T L L + ++ +
Sbjct: 120 DNISDIS--PLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IA 174
Query: 451 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 510
L+ +L +L+LN N +I + L L +L++
Sbjct: 175 NLT-------------------------DLYSLSLNYN---QIEDISPLASLTSLHYFTA 206
Query: 511 KENAFTSFSESMLAWPELRTIDIAENPIE 539
N T + + L ++ I N I
Sbjct: 207 YVNQITDIT-PVANMTRLNSLKIGNNKIT 234
Score = 36.4 bits (85), Expect = 0.024
Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 16/122 (13%)
Query: 37 DVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVE 96
D+ P + + L + TN+I + +A+ L+ +++ I I +L
Sbjct: 235 DLSPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQ--ISDISVLNNLSQLNS 291
Query: 97 LQLNHNKHFPQQIVCSIISP----RRVEI--FGQNRISRIDQACFEGLTALRILYLDDNQ 150
L LN+N Q+ + + QN I+ I L+ + +
Sbjct: 292 LFLNNN-----QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344
Query: 151 LR 152
++
Sbjct: 345 IK 346
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 118 bits (298), Expect = 8e-29
Identities = 97/513 (18%), Positives = 180/513 (35%), Gaps = 74/513 (14%)
Query: 31 LQEANLDVIPSHSN-PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
Q+ ++ I + + + VL + S + + + I I G E
Sbjct: 9 TQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLD-QVTTLQADRL--GIKSIDGVE 65
Query: 90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVE-----IFGQNRISRIDQACFEGLTALRIL 144
L ++ ++N+ + I + + + N+I+ I LT L L
Sbjct: 66 YLNNLTQINFSNNQ------LTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117
Query: 145 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD 204
L +NQ+ + L L L + N + + A +GL L L ++D
Sbjct: 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG----NQVTD 169
Query: 205 -NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
L+ L L ++ N++ I L+KLT LE L N S + L+ L
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDE 225
Query: 264 LEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTS 323
L + G + L + G A NL L L N ++ + L GL L L L N ++
Sbjct: 226 LSLNG-NQLKDI--GTLASLTNLTDLDLANN-QISNLA--PLSGLTKLTELKLGANQISN 279
Query: 324 FSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSA 383
S + L +++ EN +E +P+ +L +L
Sbjct: 280 IS-PLAGLTALTNLELNENQLE-----------------------DISPI--SNLKNL-- 311
Query: 384 EDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 443
L +++IS L+ L+ L +N++ + + L+ LT + L G N S
Sbjct: 312 TYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD 367
Query: 444 LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLP 503
L L+ + +L + + N+++ N L +
Sbjct: 368 LTP--LANLTRITQLGLND--QAWTNAPVNYKANVSIPNTVKNVTGALIAPAT--ISDGG 421
Query: 504 NLYHLNLKENAFTSFSESMLAWPELRTIDIAEN 536
+ ++ N + +E + + TI
Sbjct: 422 SYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT 454
Score = 111 bits (281), Expect = 2e-26
Identities = 83/435 (19%), Positives = 157/435 (36%), Gaps = 78/435 (17%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
I++I L L + S L + L+ ++
Sbjct: 12 TPINQIFT--DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSID--GVE 65
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 244
L L+ ++ LT+I+ + L+ L +++ +N++ I L+ LT L L +
Sbjct: 66 YLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121
Query: 245 NGFSMLEAGCFKGLSYLKRL--------EITGASNLTRVRK----------GAFADNLNL 286
N + ++ K L+ L RL +I+ S LT +++ A+ L
Sbjct: 122 NQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 179
Query: 287 ETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIE 345
E L ++ N K+ I L L NL L N + + +L L + + N ++
Sbjct: 180 ERLDISSN-KVSDIS--VLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLK 234
Query: 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLS 405
L SL +L DL A ++N++ GL+
Sbjct: 235 -----------------------DIGTL--ASLTNL--TDLDLANNQISNLAP--LSGLT 265
Query: 406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN 465
L L L N++ +I L+ LT L LE+ +N + L L L + +N
Sbjct: 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF-NN 320
Query: 466 LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLA 524
++ + + L+ L N K+ + +L L N+ L+ N + + + L
Sbjct: 321 ISDI--SPVSSLTKLQRLFFYNN---KVSDVSSLANLTNINWLSAGHNQISDLTPLANL- 374
Query: 525 WPELRTIDIAENPIE 539
+ + + +
Sbjct: 375 -TRITQLGLNDQAWT 388
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 114 bits (287), Expect = 1e-28
Identities = 60/237 (25%), Positives = 95/237 (40%), Gaps = 46/237 (19%)
Query: 28 SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
S + L IPS+ ++L L +N++ + +P
Sbjct: 20 SVDCSSKKLTAIPSNIPADTKKLDLQSNKLSS-----------------------LPSKA 56
Query: 88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
F KL L LN NK + + F+ L L L++
Sbjct: 57 FHRLTKLRLLYLNDNK-----------------------LQTLPAGIFKELKNLETLWVT 93
Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAF 207
DN+L+++P F L LAELR+ N +L F+ L +L+ L L L ++ F
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Query: 208 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 264
L+ L+ L L +N+L+ +P KLT L+ L++ N + G F L LK L
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210
Score = 101 bits (255), Expect = 2e-24
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 6/169 (3%)
Query: 384 EDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 443
L L + F+ L L +L +TDN+LQ++P +L L EL + +N
Sbjct: 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123
Query: 444 LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGL 502
L F L+ L L + + L + KG F D L +L+ L L N +LK + E A L
Sbjct: 124 LPPRVFDSLTKLTYLSLGY-NELQSLPKGVF-DKLTSLKELRLYNN-QLKRVPEGAFDKL 180
Query: 503 PNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCN-ILWLRE 549
L L L N E +L+ + + ENP +C CN I+++ +
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAK 229
Score = 99.7 bits (249), Expect = 1e-23
Identities = 51/236 (21%), Positives = 89/236 (37%), Gaps = 59/236 (25%)
Query: 148 DNQLRSVPT--PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN 205
+L ++P+ P+ +L + N ++L AF+ L +L L L L +
Sbjct: 25 SKKLTAIPSNIPAD-----TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79
Query: 206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 265
F+ L L +L +TDN+LQ++P +L L EL + +N L F L+
Sbjct: 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT------ 133
Query: 266 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS 325
L L+L N +L+++ +G L +L L L N
Sbjct: 134 -------------------KLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173
Query: 326 ESMLA-------------------------WPELRTIDIAENPIECGCN-ILWLRE 355
E +L+ + + ENP +C CN I+++ +
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAK 229
Score = 89.3 bits (222), Expect = 6e-20
Identities = 58/248 (23%), Positives = 92/248 (37%), Gaps = 74/248 (29%)
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
LDL+ L+++ AF L+ LR L L DN+LQ++P +L LE L + N L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL 311
G F L NL L L++N +LK++ L L
Sbjct: 102 IGVFDQLV-------------------------NLAELRLDRN-QLKSLPPRVFDSLTKL 135
Query: 312 YHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA 371
+L+L N S + VF
Sbjct: 136 TYLSLGYNELQSLPKG-------------------------------------VF----- 153
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
L SL ++L L + + AF L+ L++L L +N+L+ +P L +L
Sbjct: 154 ----DKLTSL--KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207
Query: 432 EELEIGQN 439
+ L++ +N
Sbjct: 208 KMLQLQEN 215
Score = 73.9 bits (182), Expect = 8e-15
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 25/182 (13%)
Query: 30 NLQEANLDVIPS---HSNPSIQRLVLSTNRIKTVDSAIPIYLS-LQHVDLSHTTWLIIPI 85
+LQ L +PS H ++ L L+ N+++T+ + I L L+ + ++ +PI
Sbjct: 43 DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102
Query: 86 GGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF-----------GQNRISRIDQAC 134
G F+ L EL+L+ N Q+ + PR +F G N + + +
Sbjct: 103 GVFDQLVNLAELRLDRN-----QL--KSLPPR---VFDSLTKLTYLSLGYNELQSLPKGV 152
Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
F+ LT+L+ L L +NQL+ VP +F L L L++ N + +GAF+ L +L L L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Query: 195 RG 196
+
Sbjct: 213 QE 214
Score = 73.1 bits (180), Expect = 2e-14
Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG 447
C+ LT I N + + L L N+L S+P+K +LT+L L + N L AG
Sbjct: 23 CSSKKLTAIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79
Query: 448 CFKGLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY 506
FK L L+ L +T N L + G F +NL L L++N +LK + L L
Sbjct: 80 IFKELKNLETLWVT--DNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLT 136
Query: 507 HLNLKENAFTS 517
+L+L N S
Sbjct: 137 YLSLGYNELQS 147
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 112 bits (282), Expect = 3e-26
Identities = 73/551 (13%), Positives = 172/551 (31%), Gaps = 89/551 (16%)
Query: 28 SCNLQEANLDVIPSHSNPSIQRLVLSTNR-IKTVDSAIPIYLSLQHVDLSHTTWLIIP-- 84
+ Q+ +D P + + ++++ K++ + I L + +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201
Query: 85 IGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRIL 144
+ KL + + ++ F + +C E + + + ++ L L +
Sbjct: 202 VMRLT---KLRQFYMGNSP-FVAENICEAWENENSEY---AQQYKTEDLKWDNLKDLTDV 254
Query: 145 YLDD-NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG--------LGRLSALDLR 195
+ + L +P L + + V N + + ++ + +
Sbjct: 255 EVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313
Query: 196 GAGLTNIS-DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 254
L + + + + L L N+L+ +L L + N + + A
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANF 372
Query: 255 FKGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLP---- 309
++ L + L + A ++ + + + N ++ +++ L
Sbjct: 373 CGFTEQVENLSFAH-NKLKYIPNIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPF 430
Query: 310 ---NLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRNTSAV 365
N+ +NL N + F + + + L +I++ N
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN----------------------- 467
Query: 366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTK-Q 424
L + L + F+ L S+ L N+L + +
Sbjct: 468 -----------MLTEIPKNSLKD--------ENENFKNTYLLTSIDLRFNKLTKLSDDFR 508
Query: 425 LSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRK-----GAFADNLN 479
+ L L +++ N FS S LK I + R +
Sbjct: 509 ATTLPYLVGIDLSYNSFSKFPTQPLN-SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567
Query: 480 LETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPI 538
L L + N ++ + E PN+ L++K+N S S + + E + +
Sbjct: 568 LTQLQIGSN-DIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623
Query: 539 E--CGCNILWL 547
+ GC+ L +
Sbjct: 624 QDIRGCDALDI 634
Score = 111 bits (279), Expect = 6e-26
Identities = 76/538 (14%), Positives = 156/538 (28%), Gaps = 77/538 (14%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
+ P + ++ R+ + + DL P
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175
Query: 90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDN 149
+ + L+ N I+ + +A LT LR Y+ ++
Sbjct: 176 KKSSRITLKDTQIGQLS------------------NNITFVSKA-VMRLTKLRQFYMGNS 216
Query: 150 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRG 209
+ + D ++ L L+ +++ +
Sbjct: 217 PFVAENICEAWENENSEYAQ-----QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271
Query: 210 LSGLRSLVLTDNRLQSIPT--------KQLSKLTRLEELEIGQNGFSMLEA-GCFKGLSY 260
L ++ + + NR S +++ + IG N + +
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331
Query: 261 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENA 320
L LE + L AF + L +L L N ++ I + +L+ N
Sbjct: 332 LGMLECLY-NQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK 388
Query: 321 FTSFSESMLAW--PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSL 378
A + ID + N I + + P P K ++
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIG-SVDGKNFDPL------------DPTPFKGINV 435
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-------KQLSKLTRL 431
S+ +L + ++ F S L S+ L N L IP + L
Sbjct: 436 SSI---NL--SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490
Query: 432 EELEIGQNGFSML-EAGCFKGLSYLKRLEITGASN-LTRVRKGAFADNL-NLETLTLNKN 488
+++ N + L + L YL +++ + N ++ N L+ +
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDL--SYNSFSKFPTQPL--NSSTLKGFGIRNQ 546
Query: 489 PKL---KIIEE--DALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 541
+ + E + + P+L L + N +E + P + +DI +NP
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISI 602
Score = 110 bits (278), Expect = 9e-26
Identities = 78/521 (14%), Positives = 154/521 (29%), Gaps = 90/521 (17%)
Query: 45 PSIQRLVLSTNRIK-----TVDSAIPIYLSLQHVDLS--HTTWLIIPIGGFEPQEKLVEL 97
++ L L ++ K I +S + H + E L++
Sbjct: 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164
Query: 98 QLNHNKHFPQQIVCSIISPRRVEIFGQ-NRISRIDQACFEGLTALRILYLDDNQLRSVPT 156
+N + S I+ + +I N I+ + +A LT LR Y+ ++ +
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA-VMRLTKLRQFYMGNSPFVAENI 223
Query: 157 PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSL 216
+ D ++ L L+ +++ + L ++ +
Sbjct: 224 CEAWENENSEYAQ-----QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278
Query: 217 VLTDNRLQSIPT--------KQLSKLTRLEELEIGQNGFSMLEA-GCFKGLSYLKRLEIT 267
+ NR S +++ + IG N + + L LE
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338
Query: 268 GASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSES 327
+ L AF + L +L L N ++ I + +L+ N
Sbjct: 339 Y-NQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNI 395
Query: 328 MLAW--PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAED 385
A + ID + N I
Sbjct: 396 FDAKSVSVMSAIDFSYNEIG---------------------------------------- 415
Query: 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
G + F+G++ + S+ L++N++ P + S + L + + N + +
Sbjct: 416 -SVDGKNFDPLDPTPFKGIN-VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473
Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL-KIIEEDALVGLPN 504
K + N L ++ L N KL K+ ++ LP
Sbjct: 474 KNSLKDEN----ENF---KNTY-----------LLTSIDLRFN-KLTKLSDDFRATTLPY 514
Query: 505 LYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNIL 545
L ++L N+F+ F L L+ I G L
Sbjct: 515 LVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555
Score = 99.7 bits (249), Expect = 3e-22
Identities = 61/413 (14%), Positives = 116/413 (28%), Gaps = 79/413 (19%)
Query: 69 SLQHVDLSH---TTWLIIPIGGFEPQE-----KLVELQLNHNKHFPQQIVCSIISPRRVE 120
+Q ++++ + + + K+ + + +N + +
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-----NLKTFPVET---- 324
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 180
+ + L +L NQL P+F LA L + N T +
Sbjct: 325 -------------SLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPA 370
Query: 181 GAFNGLGRLSALDLRGAGLTNISDNAF-RGLSGLRSLVLTDNRLQSIPTKQLS------- 232
++ L L I + + +S + ++ + N + S+ K
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430
Query: 233 KLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL-----EITG-ASNLTRVRKGAFADNLNL 286
K + + + N S F S L + +T N + F + L
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490
Query: 287 ETLTLNKNPKLKTI-EEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 345
++ L N KL + ++ LP L ++L N+F+ F L L+ I
Sbjct: 491 TSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549
Query: 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRG-- 403
G L R P SL L I N R
Sbjct: 550 QGNRTL--------REWPEGITLCP------SLTQL-------------QIGSNDIRKVN 582
Query: 404 ---LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLS 453
+ L + DN SI + + + + +
Sbjct: 583 EKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635
Score = 87.8 bits (218), Expect = 2e-18
Identities = 60/374 (16%), Positives = 115/374 (30%), Gaps = 52/374 (13%)
Query: 183 FNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT----KQLSKLTRLE 238
N GR++ L L G G + +A L+ L L L + + K +S E
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 239 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 298
+ + + + + Y R + +L +N +P+ K
Sbjct: 137 QKQKMRMHYQKTF------VDYDPREDF-----------------SDLIKDCINSDPQQK 173
Query: 299 TIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI--ECGCNILWLREM 356
+I++ + N T S++++ +LR + +P E C
Sbjct: 174 SIKKS-SRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232
Query: 357 LVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNR 416
+ LK+ +L L D+ + L ++ + + NR
Sbjct: 233 EYAQQYKTE------DLKWDNLKDL--TDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284
Query: 417 LQSIPT--------KQLSKLTRLEELEIGQNGFSMLEA-GCFKGLSYLKRLEITGASNLT 467
S +++ + IG N + + L LE + L
Sbjct: 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY-NQLE 343
Query: 468 RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-- 525
AF + L +L L N ++ I + + +L+ N A
Sbjct: 344 GKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401
Query: 526 PELRTIDIAENPIE 539
+ ID + N I
Sbjct: 402 SVMSAIDFSYNEIG 415
Score = 62.0 bits (151), Expect = 3e-10
Identities = 32/245 (13%), Positives = 67/245 (27%), Gaps = 41/245 (16%)
Query: 45 PSIQRLVLSTNRIKTVD----SAIPIYL----SLQHVDLSH---TTWLIIPIGGFEPQEK 93
+ + S N I +VD + ++ ++LS+ + P F
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK---FPKELFSTGSP 458
Query: 94 LVELQLNHNK--HFPQQIVCSIISPRRVEIFGQ-----------NRISRI-DQACFEGLT 139
L + L N P+ + E F N+++++ D L
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDEN-----ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513
Query: 140 ALRILYLDDNQLRSVPT-----PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
L + L N PT + G+ + N L+ L +
Sbjct: 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573
Query: 195 RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 254
+ +++ + L + DN SI + + + +
Sbjct: 574 GSNDIRKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630
Query: 255 FKGLS 259
+
Sbjct: 631 ALDIK 635
Score = 35.4 bits (82), Expect = 0.050
Identities = 20/158 (12%), Positives = 48/158 (30%), Gaps = 23/158 (14%)
Query: 45 PSIQRLVLSTNRIKTVDSAIPIY--LSLQHVDLSH---TTWLIIPIGGFEPQEKLVELQL 99
+ + L N++ + L +DLS+ + P L +
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK---FPTQPLNSS-TLKGFGI 543
Query: 100 NHNK---------HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQ 150
+ + +P+ I S +++I G N I ++++ + +L + DN
Sbjct: 544 RNQRDAQGNRTLREWPEGI-TLCPSLTQLQI-GSNDIRKVNEKI---TPNISVLDIKDNP 598
Query: 151 LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR 188
S+ + + + + R
Sbjct: 599 NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636
Score = 33.9 bits (78), Expect = 0.15
Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 30/149 (20%)
Query: 419 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL-----------------EIT 461
+ P L+ R+ L + G S L+ L+ L I+
Sbjct: 71 AQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGIS 130
Query: 462 GASNLTR------------VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 509
+ + V D +L +N +P+ K I++ +
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS-SRITLKDTQIG 189
Query: 510 LKENAFTSFSESMLAWPELRTIDIAENPI 538
N T S++++ +LR + +P
Sbjct: 190 QLSNNITFVSKAVMRLTKLRQFYMGNSPF 218
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 100 bits (250), Expect = 6e-24
Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 1/152 (0%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
L L L ++ +F L L L + N TL+ G F+ L L L L L ++
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
F L+ L L L N+L+S+P+ +LT+L+EL + N + AG F L+ L+
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 264 LEITGASNLTRVRKGAFADNLNLETLTLNKNP 295
L ++ + L V GAF L+T+TL N
Sbjct: 160 LSLST-NQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 98.6 bits (246), Expect = 2e-23
Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 31/202 (15%)
Query: 167 ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI 226
+L + TL+D F GL +L+ L+L L +S F L+ L +L L +N+L S+
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 227 PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN-LTRVRKGAFADNL- 284
P LT+L++L +G N L +G F L+ LK L + +N L + GAF D L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL--NTNQLQSIPAGAF-DKLT 155
Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
NL+TL+L+ N +L+++ GA L L + L N
Sbjct: 156 NLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLF-----------------------GNQF 191
Query: 345 ECGCN-ILWLREMLVRRNTSAV 365
+C IL+L + + R N++ V
Sbjct: 192 DCSRCEILYLSQWI-RENSNKV 212
Score = 95.1 bits (237), Expect = 4e-22
Identities = 68/224 (30%), Positives = 92/224 (41%), Gaps = 31/224 (13%)
Query: 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSL------ISLSAEDLGCAGAGLTNISDN 399
C CN V C KSL I E L GL +SD
Sbjct: 10 CTCN----------EGKKEVDCQG------KSLDSVPSGIPADTEKLDLQSTGLATLSDA 53
Query: 400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 459
FRGL+ L L L N+LQ++ LT L L + N + L G F L+ L +L
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113
Query: 460 ITGASN-LTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS 517
+ N L + G F D L L+ L LN N +L+ I A L NL L+L N S
Sbjct: 114 L--GGNQLKSLPSGVF-DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 518 FSESMLA-WPELRTIDIAENPIECGCN-ILWLREMLVRRNTSAV 559
+L+TI + N +C IL+L + + R N++ V
Sbjct: 170 VPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWI-RENSNKV 212
Score = 81.7 bits (202), Expect = 1e-17
Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 25/190 (13%)
Query: 56 RIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIIS 115
+ +V S IP + +DL T + F KL L L++N+
Sbjct: 25 SLDSVPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ------------ 70
Query: 116 PRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVF 175
+ + F+ LT L L L +NQL S+P F +L L +L +G N
Sbjct: 71 -----------LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT 235
+L G F+ L +L L L L +I AF L+ L++L L+ N+LQS+P +L
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179
Query: 236 RLEELEIGQN 245
+L+ + + N
Sbjct: 180 KLQTITLFGN 189
Score = 31.6 bits (72), Expect = 0.61
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 48 QRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFP 106
L L+ N++ ++ + +L L + L +P G F+ KL EL+LN N+
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ--- 142
Query: 107 QQIVCSIISPRRVEIF-----------GQNRISRIDQACFEGLTALRILYLDDNQ 150
+ SI P F N++ + F+ L L+ + L NQ
Sbjct: 143 ---LQSI--PAGA--FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 102 bits (256), Expect = 2e-23
Identities = 71/438 (16%), Positives = 137/438 (31%), Gaps = 78/438 (17%)
Query: 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
+ D E L L L ++ + + L L +L N TTL
Sbjct: 27 AFEMQATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---L 81
Query: 184 NGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
+ L+ L LTN+ L+ L L N+L + +S+ L L
Sbjct: 82 SQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCA 135
Query: 244 QNGFSMLEAGCFKGLSYL-----KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 298
+N + ++ L+ L K++ + T++ + N + L +++N L
Sbjct: 136 RNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELDVSQNKLLN 194
Query: 299 T-------IEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC--GCN 349
I + L L L+ N T + L +L D + NP+
Sbjct: 195 RLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPL--TQLTYFDCSVNPLTELDVST 252
Query: 350 ILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGL 407
+ L + + ++ LI AE G I + + L
Sbjct: 253 LSKLTTLHCIQTDLLEIDLTHNT------QLIYFQAE-------GCRKIKELDVTHNTQL 299
Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 467
L + + LS+ +L L + + L+
Sbjct: 300 YLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD---------------------- 334
Query: 468 RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE 527
+ N L++L+ I + ++ +P L + E + + L
Sbjct: 335 ------VSHNTKLKSLSCVNA---HIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNS 385
Query: 528 LRTIDIAENPIECGCNIL 545
L TI ++ + ++ N +
Sbjct: 386 L-TIAVSPDLLDQFGNPM 402
Score = 100 bits (250), Expect = 1e-22
Identities = 66/362 (18%), Positives = 118/362 (32%), Gaps = 40/362 (11%)
Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
++ + + L+ L SL ++ + + + KLT L +L N +
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNIT 77
Query: 249 MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGL 308
L+ + L L + LT + L L + N KL ++
Sbjct: 78 TLD---LSQNTNLTYLACDS-NKLTNL---DVTPLTKLTYLNCDTN-KLTKLDVS---QN 126
Query: 309 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 368
P L +LN N T S +L +D N ++ + L + S N
Sbjct: 127 PLLTYLNCARNTLTEIDVSHN--TQLTELDCHLNKKITKLDVTPQTQ-LTTLDCSF---N 180
Query: 369 SPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 428
L L L C +T + L L + N+L I ++ L
Sbjct: 181 KITELDVSQNKLL--NRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPL 232
Query: 429 TRLEELEIGQNGFSMLEAGCFKGLSYLK----RLEITGASNLTRVRKGAFADNLNLETLT 484
T+L + N + L+ L+ L L ++ T++ ++ L
Sbjct: 233 TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD 292
Query: 485 LNKNPKLKI-------IEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP 537
+ N +L + I E L P L +L L T S +L+++
Sbjct: 293 VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHN--TKLKSLSCVNAH 350
Query: 538 IE 539
I+
Sbjct: 351 IQ 352
Score = 78.6 bits (194), Expect = 1e-15
Identities = 50/340 (14%), Positives = 97/340 (28%), Gaps = 67/340 (19%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
N L + NP + L + N + +D + L +D I
Sbjct: 112 NCDTNKLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNK--KITKLDVT 167
Query: 90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF--GQNRISRIDQACFEGLTALRILYLD 147
PQ +L L + NK + + + N I+++D L L
Sbjct: 168 PQTQLTTLDCSFNKI----TELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCS 220
Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA---------------- 191
N+L + L L +N T L + L L
Sbjct: 221 SNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQL 277
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
+ + G I + + L L + + LS+ +L L + + L+
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD 334
Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL 311
+ N L++L+ ++ + +P L
Sbjct: 335 ----------------------------VSHNTKLKSLSCVNA-HIQDFSS--VGKIPAL 363
Query: 312 YHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNIL 351
+ E + + L L TI ++ + ++ N +
Sbjct: 364 NNNFEAEGQTITMPKETLTNNSL-TIAVSPDLLDQFGNPM 402
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 96.2 bits (240), Expect = 2e-22
Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 49/241 (20%)
Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
L ++ + +++ ++SV YL + L +G N + A L L+ L L
Sbjct: 37 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92
Query: 195 RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 254
G L ++ + F L+ L+ LVL +N+LQS+P KLT L L + N L G
Sbjct: 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152
Query: 255 FKGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYH 313
F D L NL L L+ N +L+++ EG L L
Sbjct: 153 F--------------------------DKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKD 185
Query: 314 LNLKEN--------AFTSFSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVRRNTSA 364
L L +N F + L+ I + +NP +C C I +L E + +++
Sbjct: 186 LRLYQNQLKSVPDGVFDRLT-------SLQYIWLHDNPWDCTCPGIRYLSEWI-NKHSGV 237
Query: 365 V 365
V
Sbjct: 238 V 238
Score = 90.8 bits (226), Expect = 1e-20
Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 57/268 (21%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
+ + P + + L + + + S+ + +++ + G +
Sbjct: 4 TVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQ--GIQ 60
Query: 90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDN 149
+ L L NK + I + + LT L L L N
Sbjct: 61 YLPNVRYLALGGNK-----------------------LHDI--SALKELTNLTYLILTGN 95
Query: 150 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRG 209
QL+S+P +G F+ L L L L L ++ D F
Sbjct: 96 QLQSLP------------------------NGVFDKLTNLKELVLVENQLQSLPDGVFDK 131
Query: 210 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 269
L+ L L L N+LQS+P KLT L EL++ N L G F L+ LK L +
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY-- 189
Query: 270 SN-LTRVRKGAFADNL-NLETLTLNKNP 295
N L V G F D L +L+ + L+ NP
Sbjct: 190 QNQLKSVPDGVF-DRLTSLQYIWLHDNP 216
Score = 73.5 bits (181), Expect = 1e-14
Identities = 45/180 (25%), Positives = 70/180 (38%), Gaps = 32/180 (17%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
L + + L + ++ + ++ L + L L G L +IS
Sbjct: 24 ANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDIS 79
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
A + L+ L L+LT N+LQS+P KLT L+EL + +N L G F L+
Sbjct: 80 --ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT---- 133
Query: 264 LEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTS 323
NL L L N +L+++ +G L NL L+L N S
Sbjct: 134 ---------------------NLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS 171
Score = 71.2 bits (175), Expect = 6e-14
Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 23/171 (13%)
Query: 400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 459
A + L+ L L+LT N+LQS+P KLT L+EL + +N L G F L+ L L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 460 ITGASN-LTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN---- 513
+ N L + KG F D L NL L L+ N +L+ + E L L L L +N
Sbjct: 140 LA--HNQLQSLPKGVF-DKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 514 ----AFTSFSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVRRNTSAV 559
F + L+ I + +NP +C C I +L E + +++ V
Sbjct: 196 VPDGVFDRLT-------SLQYIWLHDNPWDCTCPGIRYLSEWI-NKHSGVV 238
Score = 70.0 bits (172), Expect = 2e-13
Identities = 63/270 (23%), Positives = 90/270 (33%), Gaps = 64/270 (23%)
Query: 222 RLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
Q P + + + + L+ + ++ S++ V
Sbjct: 9 IKQIFPD-DAF--AETIKANLKKKSVTDAVT--QNELNSIDQIIANN-SDIKSV--QGIQ 60
Query: 282 DNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAE 341
N+ L L N KL I AL L NL +L L N S
Sbjct: 61 YLPNVRYLALGGN-KLHDI--SALKELTNLTYLILTGNQLQSLP---------------- 101
Query: 342 NPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAF 401
+ VF + LK L L ++ D F
Sbjct: 102 ---------------------NGVF-DKLTNLKE----------LVLVENQLQSLPDGVF 129
Query: 402 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
L+ L L L N+LQS+P KLT L EL++ N L G F L+ LK L +
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189
Query: 462 GASN-LTRVRKGAFADNL-NLETLTLNKNP 489
N L V G F D L +L+ + L+ NP
Sbjct: 190 --QNQLKSVPDGVF-DRLTSLQYIWLHDNP 216
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 93.9 bits (234), Expect = 1e-20
Identities = 82/497 (16%), Positives = 162/497 (32%), Gaps = 78/497 (15%)
Query: 43 SNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHN 102
SN +Q + ++ + + S + + W G Q ++ +L
Sbjct: 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD- 67
Query: 103 KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 162
C +E+ +S + E L L N L +P L
Sbjct: 68 --------CLDRQAHELEL-NNLGLSSLP----ELPPHLESLVASCNSLTELP-ELPQSL 113
Query: 163 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNR 222
L L + L L L + L + + + S L+ + + +N
Sbjct: 114 KSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNS 164
Query: 223 LQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD 282
L+ +P LE + G N L + L +L + ++L ++
Sbjct: 165 LKKLP----DLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADN-NSLKKL----PDL 213
Query: 283 NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAEN 342
L+LE++ N L+ + E L LP L + N + + P L +++ +N
Sbjct: 214 PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDN 267
Query: 343 PIECGCNILW-LREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAF 401
+ + L + V N + P L Y L + + ++ D
Sbjct: 268 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY----------LNASSNEIRSLCDL-- 315
Query: 402 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
L L +++N+L +P + RLE L N + + LK+L +
Sbjct: 316 --PPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL----PQNLKQLHVE 365
Query: 462 GASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES 521
+ L ++E L +N + ++ E NL L+++ N F +
Sbjct: 366 Y-NPLREFPDIPE----SVEDLRMN-SHLAEVPEL-----PQNLKQLHVETNPLREFPDI 414
Query: 522 MLAWPELRTIDIAENPI 538
+ + + +
Sbjct: 415 P---ESVEDLRMNSERV 428
Score = 88.1 bits (219), Expect = 9e-19
Identities = 67/421 (15%), Positives = 142/421 (33%), Gaps = 58/421 (13%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
L L +P P ++ LV S N + + SL + + +P
Sbjct: 77 ELNNLGLSSLPE-LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP----- 130
Query: 90 PQEKLVELQLNHNK--HFPQQIVCSIISPRRVEI--FGQNRISRIDQACFEGLTALRILY 145
L L +++N+ P + + ++I N + ++ + +L +
Sbjct: 131 --PLLEYLGVSNNQLEKLP-----ELQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIA 179
Query: 146 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN 205
+NQL +P L L + N L + L ++ L + +
Sbjct: 180 AGNNQLEELP--ELQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEELPE- 232
Query: 206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 265
+ L L ++ +N L+++P LE L + N + L + L++L E
Sbjct: 233 -LQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLPE-LPQSLTFLDVSE 286
Query: 266 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS 325
S L+ + NL L + N +++++ + P+L LN+ N
Sbjct: 287 N-IFSGLSELPP-------NLYYLNASSN-EIRSLCDL----PPSLEELNVSNNKLIELP 333
Query: 326 ESMLAWPELRTIDIAENPIECGCNILW-LREMLVRRNTSAVFCNSPAPLKYKSLISLSAE 384
P L + + N + + L+++ V N F + P ++ ++
Sbjct: 334 ALP---PRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVE-DLRMNSHLA 389
Query: 385 DLGCAGAGLT--NISDNAFR----GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 438
++ L ++ N R + L + R+ +LE+
Sbjct: 390 EVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449
Query: 439 N 439
+
Sbjct: 450 H 450
Score = 81.6 bits (202), Expect = 1e-16
Identities = 69/408 (16%), Positives = 128/408 (31%), Gaps = 71/408 (17%)
Query: 137 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 196
T L+ + L +P + E + + A + R
Sbjct: 9 SNTFLQEPLRHSSNLTEMP-VEAENVKSKTEYYNAWSEWERNA--------PPGNGEQRE 59
Query: 197 AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK 256
++ + D R L L + L S+P LE L N + L +
Sbjct: 60 MAVSRLRDCLDR---QAHELELNNLGLSSLP----ELPPHLESLVASCNSLTELP----E 108
Query: 257 GLSYLKRLEITGAS--NLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHL 314
LK L + + L+ + LE L ++ N +L+ + E L L +
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNN-QLEKLPE--LQNSSFLKII 158
Query: 315 NLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILW---LREMLVRRNTSAVFCNSPA 371
++ N+ + P L I N +E + L + N+ + P
Sbjct: 159 DVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPL 215
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
L+ + L + + + L L ++ +N L+++P L
Sbjct: 216 SLES----------IVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLP----DLPPSL 259
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL 491
E L + N + L + L++L E S L+ + NL L + N
Sbjct: 260 EALNVRDNYLTDLPE-LPQSLTFLDVSEN-IFSGLSELPP-------NLYYLNASSNEIR 310
Query: 492 KIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 539
+ + P+L LN+ N P L + + N +
Sbjct: 311 SLCDL-----PPSLEELNVSNNKLIELPALP---PRLERLIASFNHLA 350
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 90.6 bits (224), Expect = 5e-20
Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 1/114 (0%)
Query: 255 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHL 314
G L L I +L + L LT+ K+ L+ + A P L L
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRL 85
Query: 315 NLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 368
NL NA S S + L+ + ++ NP+ C C + WL+
Sbjct: 86 NLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQK 139
Score = 89.0 bits (220), Expect = 2e-19
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 1/114 (0%)
Query: 449 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 508
G L L I +L + L LT+ K+ L+ + DA P L L
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRL 85
Query: 509 NLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 562
NL NA S S + L+ + ++ NP+ C C + WL+
Sbjct: 86 NLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQK 139
Score = 71.7 bits (175), Expect = 1e-13
Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 26/137 (18%)
Query: 111 CSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 170
C + + + G L LY+++
Sbjct: 5 CCPHGSSGLRCTRDGALDSLHH--LPGAENLTELYIENQ--------------------- 41
Query: 171 GLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ 230
L GLG L L + +GL ++ +AF L L L+ N L+S+ K
Sbjct: 42 --QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99
Query: 231 LSKLTRLEELEIGQNGF 247
+ L+ L+EL + N
Sbjct: 100 VQGLS-LQELVLSGNPL 115
Score = 67.1 bits (163), Expect = 3e-12
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 182 AFNGLGRLSALDLRG-AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
G L+ L + L ++ RGL LR+L + + L+ + RL L
Sbjct: 26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85
Query: 241 EIGQNGFSMLEAGCFKGLSYLKRLEITG 268
+ N L +GLS L+ L ++G
Sbjct: 86 NLSFNALESLSWKTVQGLS-LQELVLSG 112
Score = 59.8 bits (144), Expect = 7e-10
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
L ++ RGL LR+L + + L+ + RL L + N L +GL
Sbjct: 44 LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103
Query: 453 SYLKRLEITG 462
S L+ L ++G
Sbjct: 104 S-LQELVLSG 112
Score = 34.3 bits (78), Expect = 0.097
Identities = 15/124 (12%), Positives = 37/124 (29%), Gaps = 28/124 (22%)
Query: 33 EANLDVIPSH--SNPSIQRLVLSTNR-IKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGF 88
H ++ L + + ++ ++ + L+++ + + + F
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
+L L L+ N + + +GL+ L+ L L
Sbjct: 77 HFTPRLSRLNLSF-----------------------NALESLSWKTVQGLS-LQELVLSG 112
Query: 149 NQLR 152
N L
Sbjct: 113 NPLH 116
Score = 33.6 bits (76), Expect = 0.19
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 30 NLQEANLDVIPSHS---NPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTW 80
+ ++ L + + P + RL LS N ++++ LSLQ + LS
Sbjct: 62 TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 90.3 bits (224), Expect = 3e-19
Identities = 79/398 (19%), Positives = 141/398 (35%), Gaps = 70/398 (17%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
N+ E+ L +P I LV+ N + ++ + P L+ +++S +P
Sbjct: 46 NVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPP---ELRTLEVSGNQLTSLP----V 98
Query: 90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDN 149
L+EL + N + + + L L++ N
Sbjct: 99 LPPGLLELSIFSNPL--------------------THLPAL-------PSGLCKLWIFGN 131
Query: 150 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRG 209
QL S+P L EL V N +L L L LT++
Sbjct: 132 QLTSLPV----LPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSLPML---- 179
Query: 210 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 269
SGL+ L ++DN+L S+P + + L +L N + L A S LK L ++G
Sbjct: 180 PSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLPAL----PSGLKELIVSG- 230
Query: 270 SNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESML 329
+ LT + L+ L ++ N +L ++ L L++ N T ES++
Sbjct: 231 NRLTSL----PVLPSELKELMVSGN-RLTSLPML----PSGLLSLSVYRNQLTRLPESLI 281
Query: 330 AWPELRTIDIAENPIE----CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAED 385
T+++ NP+ + + AP + ++L +A+
Sbjct: 282 HLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341
Query: 386 LGCAGAGLTNISD--NAFRGLSGLRSLVLTDNRLQSIP 421
L A G +D + F + L +RL
Sbjct: 342 LVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETE 379
Score = 75.7 bits (186), Expect = 1e-14
Identities = 71/411 (17%), Positives = 128/411 (31%), Gaps = 80/411 (19%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
+L + ++ L ++P + L + N T+L L L++ G
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN 91
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTK---------QLSKL----TRLEELEIGQ 244
LT++ GL L L ++P+ QL+ L L+EL +
Sbjct: 92 QLTSLPVL-PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD 150
Query: 245 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGA 304
N + L A S L +L + LT + L+ L+++ N +L ++
Sbjct: 151 NQLASLPA----LPSELCKLWAYN-NQLTSLPMLPS----GLQELSVSDN-QLASLPT-- 198
Query: 305 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC-GCNILWLREMLVRRNTS 363
LY L N TS L+ + ++ N + L+E++V N
Sbjct: 199 --LPSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPVLPSELKELMVSGN-- 251
Query: 364 AVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTK 423
L SL SGL SL + N+L +P +
Sbjct: 252 -------------RLTSLPML-------------------PSGLLSLSVYRNQLTRLP-E 278
Query: 424 QLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETL 483
L L+ + + N S + ++ + + R + L
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITSAPGY----SGPIIRFDMAGASAPRETRAL 334
Query: 484 TLNKNPKLKIIEEDALVGLPNLYHLNLKENA--FTSFSESMLAWPELRTID 532
L L E + ++NA F+ F + +
Sbjct: 335 HLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDA 385
Score = 74.9 bits (184), Expect = 3e-14
Identities = 75/396 (18%), Positives = 131/396 (33%), Gaps = 99/396 (25%)
Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
+ L++ +GLT + D + + +LV+ DN L S+P + L LE+ N +
Sbjct: 42 NAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLP----ALPPELRTLEVSGNQLT 94
Query: 249 MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGL 308
L GL L L P L
Sbjct: 95 SLPVL-PPGLLELSIFS-----------------------NPLTHLPAL----------P 120
Query: 309 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 368
L L + N TS P L+ + +++N +
Sbjct: 121 SGLCKLWIFGNQLTSLPVLP---PGLQELSVSDNQLAS-------------------LPA 158
Query: 369 SPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 428
P+ L L LT++ SGL+ L ++DN+L S+P +
Sbjct: 159 LPSELCK----------LWAYNNQLTSLPML----PSGLQELSVSDNQLASLP----TLP 200
Query: 429 TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN 488
+ L +L N + L A S LK L ++G + LT + L+ L ++ N
Sbjct: 201 SELYKLWAYNNRLTSLPAL----PSGLKELIVSG-NRLTSL----PVLPSELKELMVSGN 251
Query: 489 PKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE----CGCNI 544
+L + L L++ N T ES++ T+++ NP+
Sbjct: 252 -RLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306
Query: 545 LWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDL 580
+ + AP + ++L +A+ L
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 84.3 bits (209), Expect = 5e-19
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 30/181 (16%)
Query: 214 RSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 272
L+L DN L I + L +L L +LE+ +N + +E F+G S+++ L++ + +
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKI 90
Query: 273 TRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAW 331
+ F L L+TL L N ++ + G+ L +L LNL
Sbjct: 91 KEISNKMF-LGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNL--------------- 133
Query: 332 PELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSAEDLGCA 389
A NP C C++ W E L ++ N A C +P+ ++ + L + C+
Sbjct: 134 --------ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCS 185
Query: 390 G 390
Sbjct: 186 S 186
Score = 73.9 bits (182), Expect = 2e-15
Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 30/176 (17%)
Query: 408 RSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 466
L+L DN L I + L +L L +LE+ +N + +E F+G S+++ L++ + +
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKI 90
Query: 467 TRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW 525
+ F L L+TL L N ++ + + L +L LNL
Sbjct: 91 KEISNKMF-LGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNL--------------- 133
Query: 526 PELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSAED 579
A NP C C++ W E L ++ N A C +P+ ++ + L +
Sbjct: 134 --------ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181
Score = 63.5 bits (155), Expect = 9e-12
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 124 QNRISRID-QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA 182
N + RI F L L L L NQL + +F + EL++G N +++
Sbjct: 38 DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97
Query: 183 FNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN 221
F GL +L L+L ++ + +F L+ L SL L N
Sbjct: 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 55.4 bits (134), Expect = 4e-09
Identities = 33/172 (19%), Positives = 59/172 (34%), Gaps = 50/172 (29%)
Query: 28 SCNLQEAN-----LDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLI 82
C + L IP L+L+ N + I
Sbjct: 7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGR----------------------I 44
Query: 83 IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALR 142
G F LV+L+L N+ ++ I+ FEG + ++
Sbjct: 45 SSDGLFGRLPHLVKLELKRNQ-----------------------LTGIEPNAFEGASHIQ 81
Query: 143 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
L L +N+++ + F+ L L L + N + + G+F L L++L+L
Sbjct: 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 86.5 bits (215), Expect = 7e-18
Identities = 103/576 (17%), Positives = 182/576 (31%), Gaps = 157/576 (27%)
Query: 43 SNPSIQRLVLSTNRIKTVDSAIPIYL----SLQHVDLSHT--TWLIIPIGGFEPQEKLVE 96
+ + + LS+ + SA+ L L+ + LS++ + L
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA---SLTS 104
Query: 97 LQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLR-SVP 155
L L+ N + + + + L+ L + N L
Sbjct: 105 LDLSRN-----SLSGPV--TTLTSLGS--------------CSGLKFLNVSSNTLDFPGK 143
Query: 156 TPSFIYLGMLAELRVGLNVFT---TLADGAFNGLGRLSALDLRGAGLT------------ 200
+ L L L + N + + +G G L L + G ++
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE 203
Query: 201 --NISDNAFRG-------LSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFSML 250
++S N F S L+ L ++ N+L + +S T L+ L I N F
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFV-- 260
Query: 251 EAGCFKGLSYLKRLEITG---ASNLTRVRKGAFADNLNLETLTLNKNPKLK-TIEEGALV 306
G L +L+ L+L +N K I +
Sbjct: 261 -----------------GPIPPLPLK-----------SLQYLSLAEN-KFTGEIPDFLSG 291
Query: 307 GLPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAEN------PIECGCNILWLREMLVR 359
L L+L N F + + L ++ ++ N P++ + L+ + +
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 360 RNT-----SAVFCNSPAPLKYKSLIS------LSAEDLGCAGAGLT--NISDNAFRG--- 403
N N A L L S + L + +N F G
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 404 -----LSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFSMLEAG----CFKGLS 453
S L SL L+ N L +IP L L++L +L++ N G +
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLNMLE----GEIPQELMYVK 466
Query: 454 YLKRLEITGASNLTRVRKGA----FADNLNLETLTLNKNPKLKIIEEDALVG-------- 501
L+ L + ++LT G ++ NL ++L+ N L G
Sbjct: 467 TLETLIL-DFNDLT----GEIPSGLSNCTNLNWISLSNN---------RLTGEIPKWIGR 512
Query: 502 LPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAEN 536
L NL L L N+F+ + + L +D+ N
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Score = 73.4 bits (181), Expect = 8e-14
Identities = 106/553 (19%), Positives = 179/553 (32%), Gaps = 109/553 (19%)
Query: 39 IPSHSN-PSIQRLVLSTNRIKTVDSAIPIYL-------SLQHVDLSHTTWLI--IPIGGF 88
+ S++ L LS N I A + L+H+ +S + + +
Sbjct: 144 VSGGLKLNSLEVLDLSANSI---SGANVVGWVLSDGCGELKHLAISGNK-ISGDVDVSRC 199
Query: 89 EPQEKLVELQLNHNK---HFPQQIVCSIISPRRVEIF--GQNRISRIDQACFEGLTALRI 143
L L ++ N P + ++ N++S T L++
Sbjct: 200 V---NLEFLDVSSNNFSTGIP-----FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT-TLADGAFNGLGRLSALDLRGAGLTNI 202
L + NQ P P L L L + N FT + D L+ LDL G
Sbjct: 252 LNISSNQF-VGPIPPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 203 SDNAFRGLSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFS-MLEAGCFKGLSY 260
F S L SL L+ N +P L K+ L+ L++ N FS L +
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 261 LKRL-----EITGA--SNLTRVRKGAFADNLNLETLTLNKN------PKLKTIEEGALVG 307
L L +G NL + K L+ L L N P L
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKN------TLQELYLQNNGFTGKIPP-------TLSN 416
Query: 308 LPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAEN------PIECGCNILWLREMLVRR 360
L L+L N + + S+ + +LR + + N P E + L +++
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDF 475
Query: 361 NT-----SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRG--------LSGL 407
N + N +L + ++S+N G L L
Sbjct: 476 NDLTGEIPSGLSNC------TNLNWI-------------SLSNNRLTGEIPKWIGRLENL 516
Query: 408 RSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFS-MLEAGCFKGLSYLKRLEITGASN 465
L L++N +IP +L L L++ N F+ + A FK + I G
Sbjct: 517 AILKLSNNSFSGNIP-AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK-- 573
Query: 466 LTRVRKGAFADNLNLETLTLNKNP-KLKIIEEDALVGLPNLYHLNLKENAFT-SFSESML 523
R ++ + N + + I + L L N+ + S +
Sbjct: 574 ----RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 524 AWPELRTIDIAEN 536
+ +D++ N
Sbjct: 630 NNGSMMFLDMSYN 642
Score = 71.1 bits (175), Expect = 4e-13
Identities = 81/461 (17%), Positives = 141/461 (30%), Gaps = 88/461 (19%)
Query: 39 IPSHSN-PSIQRLVLSTNRIKTVDSAIPIYL----SLQHVDLSHTTWLIIPIGGFEPQE- 92
IP + ++Q L +S N++ + L+ +++S G P
Sbjct: 216 IPFLGDCSALQHLDISGNKL---SGDFSRAISTCTELKLLNISSNQ-----FVGPIPPLP 267
Query: 93 --KLVELQLNHNK---HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
L L L NK P + + + +++ N F + L L L
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL-SGNHFYGAVPPFFGSCSLLESLALS 326
Query: 148 DNQLR-SVPTPSFIYLGMLAELRVGLNVFT-TLADGAFNGLGRLSALDLRGAGLT----- 200
N +P + + + L L + N F+ L + N L LDL +
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 201 -------------NISDNAFRG--------LSGLRSLVLTDNRLQ-SIPTKQLSKLTRLE 238
+ +N F G S L SL L+ N L +IP L L++L
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLR 445
Query: 239 ELEIGQNGFSMLEAG----CFKGLSYLKRLEITGASNLTRVRKGA----FADNLNLETLT 290
+L++ N G + L+ L + ++LT G ++ NL ++
Sbjct: 446 DLKLWLNMLE----GEIPQELMYVKTLETLIL-DFNDLT----GEIPSGLSNCTNLNWIS 496
Query: 291 LNKNPKLK-TIEEGALVGLPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAEN------ 342
L+ N +L I + + L NL L L N+F+ + + L +D+ N
Sbjct: 497 LSNN-RLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 343 PIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFR 402
P + + N I
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDG---------MKKECHGAGNLLEFQGIRSEQLN 605
Query: 403 GLSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFS 442
LS +T + L++ N S
Sbjct: 606 RLSTRNPCNITSRVYGGHTS-PTFDNNGSMMFLDMSYNMLS 645
Score = 41.0 bits (97), Expect = 9e-04
Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 20/179 (11%)
Query: 365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQ-SIPTK 423
V C + S+ G + +S + L+GL SL L+++ + S+
Sbjct: 45 VTCRD------DKVTSIDLSSKPLNV-GFSAVSSS-LLSLTGLESLFLSNSHINGSVS-- 94
Query: 424 QLSKLTRLEELEIGQNGFSML--EAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE 481
L L++ +N S S LK L ++ + + +LE
Sbjct: 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 482 TLTLNKNPKL--KIIEEDALVG-LPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAEN 536
L L+ N + + L L HL + N + S L +D++ N
Sbjct: 155 VLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSN 210
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 78.6 bits (194), Expect = 6e-17
Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 5/131 (3%)
Query: 167 ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI 226
L + N +L +G F+ L L+ L L G L ++ + F L+ L L L+ N+LQS+
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 227 PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN-LTRVRKGAFADNL- 284
P KLT+L+EL + N L G F L+ LK L + N L V G F D L
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY--QNQLKSVPDGVF-DRLT 148
Query: 285 NLETLTLNKNP 295
+L+ + L+ NP
Sbjct: 149 SLQYIWLHDNP 159
Score = 75.1 bits (185), Expect = 1e-15
Identities = 39/121 (32%), Positives = 62/121 (51%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N + + F+ LT+L LYL N+L+S+P F L L L + N +L +G F+
Sbjct: 38 NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD 97
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 244
L +L L L L ++ D F L+ L+ L L N+L+S+P +LT L+ + +
Sbjct: 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157
Query: 245 N 245
N
Sbjct: 158 N 158
Score = 72.0 bits (177), Expect = 1e-14
Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 343 PIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFR 402
P C C+ T+ V C S + I L L ++ + F
Sbjct: 2 PSRCSCS-----------GTT-VECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFD 49
Query: 403 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 462
L+ L L L N+LQS+P +KLT L L + N L G F L+ LK L +
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-- 107
Query: 463 ASN-LTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN 513
+N L + G F D L L+ L L +N +LK + + L +L ++ L +N
Sbjct: 108 NTNQLQSLPDGVF-DKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 69.3 bits (170), Expect = 1e-13
Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 45/184 (24%)
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
LDL L ++ + F L+ L L L N+LQS+P +KLT L L + N L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPN 310
G F D L L+ L LN N +L+++ +G L
Sbjct: 93 NGVF--------------------------DKLTQLKELALNTN-QLQSLPDGVFDKLTQ 125
Query: 311 LYHLNLKEN--------AFTSFSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVRRN 361
L L L +N F + L+ I + +NP +C C I +L E + ++
Sbjct: 126 LKDLRLYQNQLKSVPDGVFDRLT-------SLQYIWLHDNPWDCTCPGIRYLSEWI-NKH 177
Query: 362 TSAV 365
+ V
Sbjct: 178 SGVV 181
Score = 60.5 bits (147), Expect = 1e-10
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 25/169 (14%)
Query: 53 STNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCS 112
+ +V + IP ++DL + +P G F+ L +L L
Sbjct: 15 YSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLG------------ 60
Query: 113 IISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 172
N++ + F LT+L L L NQL+S+P F L L EL +
Sbjct: 61 -----------GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 173 NVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN 221
N +L DG F+ L +L L L L ++ D F L+ L+ + L DN
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 81.3 bits (200), Expect = 2e-16
Identities = 55/320 (17%), Positives = 104/320 (32%), Gaps = 72/320 (22%)
Query: 47 IQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQ-LNHNKHF 105
+ + + IK + + +L + Q +L + +
Sbjct: 1 MGETITVSTPIKQI-FPDDAFAETIKDNLKKK-----SVTDAVTQNELNSIDQII----- 49
Query: 106 PQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 165
+ I + + L + L+L+ N+L + L L
Sbjct: 50 ----------------ANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI--KPLTNLKNL 89
Query: 166 AELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQS 225
L + N L+ + L +L +L L G+++I+ L L SL L +N++
Sbjct: 90 GWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITD 145
Query: 226 IPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN 285
I LS+LT+L+ L + N S +I + LT
Sbjct: 146 ITV--LSRLTKLDTLSLEDNQIS----------------DIVPLAGLT-----------K 176
Query: 286 LETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESML----AWPELRTIDIAE 341
L+ L L+KN + + L GL NL L L + + ++ D +
Sbjct: 177 LQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233
Query: 342 NPIECGCNILWLREMLVRRN 361
E + + V+ +
Sbjct: 234 VTPEIISDDGDYEKPNVKWH 253
Score = 76.3 bits (187), Expect = 8e-15
Identities = 51/347 (14%), Positives = 103/347 (29%), Gaps = 98/347 (28%)
Query: 213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 272
+ + ++ I + + + + + + L
Sbjct: 1 MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVT----------------DAVTQNEL 42
Query: 273 TRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWP 332
+++ + N + +K+++ + LPN+ L L N T +
Sbjct: 43 N-----------SIDQIIANNS-DIKSVQ--GIQYLPNVTKLFLNGNKLTDIK-PLTNLK 87
Query: 333 ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAG 392
L + + EN I
Sbjct: 88 NLGWLFLDENKI------------------------------------------------ 99
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
++S + + L L+SL L N + I L L +LE L +G N + + L
Sbjct: 100 -KDLS--SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV--LSRL 152
Query: 453 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 512
+ L L + + ++ + A L+ L L+KN I + AL GL NL L L
Sbjct: 153 TKLDTLSLED-NQISDIV--PLAGLTKLQNLYLSKN---HISDLRALAGLKNLDVLELFS 206
Query: 513 NAFTSFSESML----AWPELRTIDIAENPIECGCNILWLREMLVRRN 555
+ + ++ D + E + + V+ +
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH 253
Score = 64.7 bits (157), Expect = 4e-11
Identities = 52/300 (17%), Positives = 96/300 (32%), Gaps = 44/300 (14%)
Query: 30 NLQEANL------DVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLII 83
+ NL D + + SI +++ + + IK+V I ++ + L+ +
Sbjct: 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGN--KLT 78
Query: 84 PIGGFEPQEKLVELQLNHNK--------HFPQ---------QIVCSIISP-------RRV 119
I + L L L+ NK + I S I+ +
Sbjct: 79 DIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESL 136
Query: 120 EIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 179
+ G N+I+ I LT L L L+DNQ+ + L L L + N + L
Sbjct: 137 YL-GNNKITDIT--VLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDLR 191
Query: 180 DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEE 239
A GL L L+L N N L ++ TD L + +S E+
Sbjct: 192 --ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI--ISDDGDYEK 247
Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKT 299
+ + F + + + + ++ + K++
Sbjct: 248 PNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEA 307
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 77.4 bits (191), Expect = 3e-16
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 167 ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI 226
L + N T L G F+ L L L L L + F L+ L L L N+L +
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 227 PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL-N 285
P+ +L L+EL + N + L G + L++L L + + L + GAF D L +
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALD-QNQLKSIPHGAF-DRLSS 160
Query: 286 LETLTLNKNP 295
L L NP
Sbjct: 161 LTHAYLFGNP 170
Score = 64.7 bits (158), Expect = 6e-12
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 343 PIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFR 402
P +C C+ T+ V C S + I +A+ L +T + F
Sbjct: 14 PSQCSCS-----------GTT-VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFD 61
Query: 403 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 462
L L+ L L N+L ++P LT+L L++G N ++L + F L +LK L +
Sbjct: 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM-- 119
Query: 463 ASN-LTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN 513
N LT + +G + L +L L L++N +LK I A L +L H L N
Sbjct: 120 CCNKLTELPRG--IERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 63.2 bits (154), Expect = 2e-11
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 24/163 (14%)
Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN-L 272
+ L L DN++ + L L+EL +G N L G F L+ L L++ +N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG--TNQL 100
Query: 273 TRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN--------AFTS 323
T + F D L +L+ L + N KL + G + L +L HL L +N AF
Sbjct: 101 TVLPSAVF-DRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDR 157
Query: 324 FSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVRRNTSAV 365
S L + NP +C C I++LR + +TS
Sbjct: 158 LS-------SLTHAYLFGNPWDCECRDIMYLRNWV-ADHTSIA 192
Score = 54.7 bits (132), Expect = 1e-08
Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 30/173 (17%)
Query: 28 SCNLQEAN-----LDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLS-LQHVDLSHTTWL 81
SC+ + +P+ + Q L L N+I ++ + L L+ + L
Sbjct: 18 SCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG 77
Query: 82 IIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTAL 141
+P+G F+ +L L L N+++ + A F+ L L
Sbjct: 78 ALPVGVFDSLTQLTVLDLG-----------------------TNQLTVLPSAVFDRLVHL 114
Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
+ L++ N+L +P L L L + N ++ GAF+ L L+ L
Sbjct: 115 KELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 75.4 bits (186), Expect = 7e-16
Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 12/161 (7%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
+ L+ + L +T+++ ++ L + + + +S L+ LE L I
Sbjct: 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGK 98
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGAL 305
+ + GL+ L L+I S + ++ L+ N + I L
Sbjct: 99 DVTSDKIPNLSGLTSLTLLDI-SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PL 155
Query: 306 VGLPNLYHLNLKENAFTSFS--ESMLAWPELRTIDIAENPI 344
LP L LN++ + + E P+L + I
Sbjct: 156 KTLPELKSLNIQFDGVHDYRGIEDF---PKLNQLYAFSQTI 193
Score = 72.3 bits (178), Expect = 8e-15
Identities = 29/204 (14%), Positives = 59/204 (28%), Gaps = 36/204 (17%)
Query: 120 EIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 179
+ GQ+ + I +A + +L + L + + +
Sbjct: 28 GLLGQSSTANITEA---QMNSLTYITLANINVTDLT------------------------ 60
Query: 180 DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEE 239
+ L + TN + GLS L L + + S LS LT L
Sbjct: 61 --GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116
Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKT 299
L+I + L + ++++ +T + L++L + + +
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFD-GVHD 173
Query: 300 IEEGALVGLPNLYHLNLKENAFTS 323
+ P L L
Sbjct: 174 YR--GIEDFPKLNQLYAFSQTIGG 195
Score = 70.0 bits (172), Expect = 5e-14
Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 14/173 (8%)
Query: 368 NSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK 427
+S A + + SL + A +T+++ ++ L + + + +S
Sbjct: 33 SSTANITEAQMNSL--TYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISG 86
Query: 428 LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK 487
L+ LE L I + + GL+ L L+I S + ++ L+
Sbjct: 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI-SHSAHDDSILTKINTLPKVNSIDLSY 145
Query: 488 NPKLKIIEEDALVGLPNLYHLNLKENAFTSFS--ESMLAWPELRTIDIAENPI 538
N + I L LP L LN++ + + E P+L + I
Sbjct: 146 NGAITDIM--PLKTLPELKSLNIQFDGVHDYRGIEDF---PKLNQLYAFSQTI 193
Score = 63.4 bits (155), Expect = 8e-12
Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 7/134 (5%)
Query: 384 EDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 443
+DL TN + GLS L L + + S LS LT L L+I +
Sbjct: 69 KDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 444 LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLP 503
L + ++++ +T + L++L + + + + + P
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFD---GVHDYRGIEDFP 181
Query: 504 NLYHLNLKENAFTS 517
L L
Sbjct: 182 KLNQLYAFSQTIGG 195
Score = 58.8 bits (143), Expect = 3e-10
Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 7/131 (5%)
Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 181
+ + GL+ L L + + S P+ L L L + +
Sbjct: 73 INNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130
Query: 182 AFNGLGRLSALDLRG-AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
N L +++++DL +T+I + L L+SL + + + + + +L +L
Sbjct: 131 KINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQL 186
Query: 241 EIGQNGFSMLE 251
+
Sbjct: 187 YAFSQTIGGKK 197
Score = 52.3 bits (126), Expect = 6e-08
Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 61/237 (25%)
Query: 211 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 270
S ++ + S +++ L + + + L G+ Y ++ +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLT-----GIEYAHNIKDLTIN 74
Query: 271 NLTRVRK-GAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESML 329
N + NLE L + + + + L GL +L L++ +A + +
Sbjct: 75 N-IHATNYNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132
Query: 330 AW-PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGC 388
P++ +ID++ N
Sbjct: 133 NTLPKVNSIDLSYNG--------------------------------------------- 147
Query: 389 AGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
+T+I + L L+SL + + + + + +L +L +
Sbjct: 148 ---AITDIM--PLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGKK 197
Score = 34.5 bits (80), Expect = 0.043
Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 23/139 (16%)
Query: 30 NLQEANL------DVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLI 82
N+++ + + P +++RL + + + + SL +D+SH+
Sbjct: 67 NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 83 IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISP-------RRVEIFGQNRISRIDQACF 135
+ K+ + L++N I + I P + + I + +
Sbjct: 127 SILTKINTLPKVNSIDLSYN----GAI--TDIMPLKTLPELKSLNIQF-DGVHDYR--GI 177
Query: 136 EGLTALRILYLDDNQLRSV 154
E L LY +
Sbjct: 178 EDFPKLNQLYAFSQTIGGK 196
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 76.7 bits (189), Expect = 2e-15
Identities = 41/225 (18%), Positives = 85/225 (37%), Gaps = 19/225 (8%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 180
I I+ I L + + + T L + L TT+
Sbjct: 3 ITQPTAINVIF--PDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE- 57
Query: 181 GAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
L L L+L+ +T+++ + L+ + L L+ N L+++ ++ L ++ L
Sbjct: 58 -GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTL 112
Query: 241 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTI 300
++ + + GLS L+ L + + +T + A NL+ L++ ++ +
Sbjct: 113 DLTSTQITDVTP--LAGLSNLQVLYL-DLNQITNIS--PLAGLTNLQYLSIGNA-QVSDL 166
Query: 301 EEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 345
L L L L +N + S + + P L + + N I
Sbjct: 167 T--PLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQIS 208
Score = 73.2 bits (180), Expect = 2e-14
Identities = 49/278 (17%), Positives = 97/278 (34%), Gaps = 53/278 (19%)
Query: 30 NLQEANLDVIPSHSN-PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
++N+ + ++ I L + T+ + +L ++L I +
Sbjct: 25 AAGKSNVTDTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDN--QITDLAPL 81
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISPR-----RVEIFGQNRISRIDQACFEGLTALRI 143
+ K+ EL+L+ N + ++ + + +I+ + GL+ L++
Sbjct: 82 KNLTKITELELSGNP------LKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV 133
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
LYLD NQ+ ++ GL L L + A +++++
Sbjct: 134 LYLDLNQITNIS--------------------------PLAGLTNLQYLSIGNAQVSDLT 167
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
LS L +L DN++ I L+ L L E+ + N S + S L
Sbjct: 168 --PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221
Query: 264 LEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE 301
+ +T + N NL + K P I
Sbjct: 222 VTLTN----QTITNQPVFYNNNLVVPNVVKGPSGAPIA 255
Score = 70.9 bits (174), Expect = 1e-13
Identities = 55/315 (17%), Positives = 95/315 (30%), Gaps = 94/315 (29%)
Query: 209 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 268
L+ + + + T + L + L G + +E G+ YL
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE-----GVQYLN------ 63
Query: 269 ASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESM 328
NL L L N ++ + L L + L L N + ++
Sbjct: 64 ----------------NLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNV-SAI 103
Query: 329 LAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGC 388
++T+D+ I
Sbjct: 104 AGLQSIKTLDLTSTQI-------------------------------------------- 119
Query: 389 AGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 448
T+++ GLS L+ L L N++ +I L+ LT L+ L IG S L
Sbjct: 120 -----TDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-- 168
Query: 449 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 508
LS L L+ + ++ + A NL + L N +I + L NL+ +
Sbjct: 169 LANLSKLTTLKADD-NKISDIS--PLASLPNLIEVHLKNN---QISDVSPLANTSNLFIV 222
Query: 509 NLKENAFTSFSESML 523
L T+
Sbjct: 223 TLTNQTITNQPVFYN 237
Score = 67.4 bits (165), Expect = 2e-12
Identities = 54/255 (21%), Positives = 96/255 (37%), Gaps = 46/255 (18%)
Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENP 343
N + K+ + L + L+ T+ L L +++ +N
Sbjct: 20 NAIKIAAGKS-NVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYL--NNLIGLELKDNQ 74
Query: 344 IECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRG 403
I APLK +L + +L +G L N+S A G
Sbjct: 75 IT-----------------------DLAPLK--NLTKI--TELELSGNPLKNVS--AIAG 105
Query: 404 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 463
L +++L LT ++ + L+ L+ L+ L + N + + GL+ L+ L I G
Sbjct: 106 LQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI-GN 160
Query: 464 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 523
+ ++ + A+ L TL + N KI + L LPNL ++LK N + S +
Sbjct: 161 AQVSDLT--PLANLSKLTTLKADDN---KISDISPLASLPNLIEVHLKNNQISDVSP-LA 214
Query: 524 AWPELRTIDIAENPI 538
L + + I
Sbjct: 215 NTSNLFIVTLTNQTI 229
Score = 59.3 bits (144), Expect = 7e-10
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 384 EDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 443
L G G+T I + L+ L L L DN++ + L LT++ ELE+ N
Sbjct: 44 TTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN 99
Query: 444 LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLP 503
+ A GL +K L++ ++ +T V A NL+ L L+ N +I L GL
Sbjct: 100 VSA--IAGLQSIKTLDL-TSTQITDVT--PLAGLSNLQVLYLDLN---QITNISPLAGLT 151
Query: 504 NLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIE 539
NL +L++ + + + L +L T+ +N I
Sbjct: 152 NLQYLSIGNAQVSDLTPLANL--SKLTTLKADDNKIS 186
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 71.9 bits (177), Expect = 9e-15
Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 30/180 (16%)
Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 273
L L N+ +P K+LS L +++ N S L F ++ L L ++ + L
Sbjct: 34 TELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLR 91
Query: 274 RVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWP 332
+ F D L +L L+L+ N + + EGA L L HL +
Sbjct: 92 CIPPRTF-DGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAI---------------- 133
Query: 333 ELRTIDIAENPIECGCNILWLREMLVR--RNTSAVFCNSPAPLKYKSLISLSAEDLGCAG 390
NP+ C CN+ WL + + + C P + K L++ ++ CA
Sbjct: 134 -------GANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCAA 186
Score = 62.7 bits (153), Expect = 1e-11
Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 30/175 (17%)
Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 467
L L N+ +P K+LS L +++ N S L F ++ L L ++ + L
Sbjct: 34 TELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLR 91
Query: 468 RVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWP 526
+ F D L +L L+L+ N + ++ E A L L HL +
Sbjct: 92 CIPPRTF-DGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAI---------------- 133
Query: 527 ELRTIDIAENPIECGCNILWLREMLVR--RNTSAVFCNSPAPLKYKSLISLSAED 579
NP+ C CN+ WL + + + C P + K L++ ++
Sbjct: 134 -------GANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKK 181
Score = 62.7 bits (153), Expect = 2e-11
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 399 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 458
L + L++NR+ ++ + S +T+L L + N + F GL L+ L
Sbjct: 48 KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107
Query: 459 EITGASNLTRVRKGAFADNL-NLETLTLNKNP 489
+ G ++++ V +GAF ++L L L + NP
Sbjct: 108 SLHG-NDISVVPEGAF-NDLSALSHLAIGANP 137
Score = 61.9 bits (151), Expect = 3e-11
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N+ + + + L ++ L +N++ ++ SF + L L + N + F+
Sbjct: 41 NQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN 221
GL L L L G ++ + + AF LS L L + N
Sbjct: 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 55.4 bits (134), Expect = 5e-09
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 28/151 (18%)
Query: 28 SCNLQEAN-----LDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLI 82
+C L V+P + L L N+ V + Y L +DLS+
Sbjct: 9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST 68
Query: 83 IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALR 142
+ F +L+ L L++N ++ C P R F+GL +LR
Sbjct: 69 LSNQSFSNMTQLLTLILSYN-----RLRCI---PPRT---------------FDGLKSLR 105
Query: 143 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 173
+L L N + VP +F L L+ L +G N
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 71.5 bits (176), Expect = 1e-13
Identities = 59/321 (18%), Positives = 105/321 (32%), Gaps = 44/321 (13%)
Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG-LGRLSALD 193
+ L+ + Y D AD + AL+
Sbjct: 29 HDVLSQWQRHYNADRNRWHSAW-RQANSNNPQIETRTGRALKATADLLEDATQPGRVALE 87
Query: 194 LRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG 253
LR L D AFR LS L+ + + L +P + + LE L + +N L A
Sbjct: 88 LRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRALPAS 145
Query: 254 CFKGLSYLKRLEITGASNLTRV-------RKGAFADNL-NLETLTLNKNPKLKTIEEGAL 305
L+ L+ L I LT + L NL++L L ++++ +
Sbjct: 146 -IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-I 202
Query: 306 VGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAV 365
L NL L ++ + ++ ++ P+L +D+ GC L
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL------RGCTAL---RNY-------- 245
Query: 366 FCNSPAPLKY-KSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDN-RLQSIPTK 423
P L L +D + L + + L+ L L L L +P
Sbjct: 246 ----PPIFGGRAPLKRLILKD----CSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLP-S 295
Query: 424 QLSKLTRLEELEIGQNGFSML 444
+++L + + + + L
Sbjct: 296 LIAQLPANCIILVPPHLQAQL 316
Score = 69.2 bits (170), Expect = 6e-13
Identities = 59/316 (18%), Positives = 113/316 (35%), Gaps = 27/316 (8%)
Query: 210 LSGLRSLVLTD-NRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 268
SG +L L+ LS+ R + + + + + TG
Sbjct: 11 SSGRENLYFQGSTALRPYHD-VLSQWQRHYNADRNRWHSA----WRQANSNNPQIETRTG 65
Query: 269 ASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESM 328
+ A L L L + L +L H+ + ++M
Sbjct: 66 RALKATADLLEDATQPGRVALELRSV-PLPQFPD-QAFRLSHLQHMTIDAAGLMELPDTM 123
Query: 329 LAWPELRTIDIAENPIEC----GCNILWLREMLVRRNTS-----AVFCNSPAPLKYKSLI 379
+ L T+ +A NP+ ++ LRE+ +R ++ A +++ L+
Sbjct: 124 QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183
Query: 380 SLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439
+L + L G+ ++ + L L+SL + ++ L ++ + L +LEEL++
Sbjct: 184 NL--QSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDL--R 237
Query: 440 GFSMLEA--GCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED 497
G + L F G + LKRL + SNL + LE L L L +
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPS- 295
Query: 498 ALVGLPNLYHLNLKEN 513
+ LP + + +
Sbjct: 296 LIAQLPANCIILVPPH 311
Score = 65.0 bits (159), Expect = 2e-11
Identities = 62/303 (20%), Positives = 100/303 (33%), Gaps = 66/303 (21%)
Query: 28 SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
+ +A D++ + P L L + + LQH+ +
Sbjct: 64 TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA--------- 114
Query: 88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
L+EL P + L L L
Sbjct: 115 -----GLMEL--------PDTMQQ--------------------------FAGLETLTLA 135
Query: 148 DNQLRSVPTPSFIYLGMLAELRV-GLNVFTTL--------ADGAFNGLGRLSALDLRGAG 198
N LR++P S L L EL + T L A G GL L +L L G
Sbjct: 136 RNPLRALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA--GCFK 256
+ ++ + L L+SL + ++ L ++ + L +LEEL++ G + L F
Sbjct: 195 IRSLPAS-IANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDL--RGCTALRNYPPIFG 250
Query: 257 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNL 316
G + LKRL + SNL + LE L L L + + LP + +
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILV 308
Query: 317 KEN 319
+
Sbjct: 309 PPH 311
Score = 53.0 bits (128), Expect = 1e-07
Identities = 45/269 (16%), Positives = 83/269 (30%), Gaps = 47/269 (17%)
Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
E L + L+ + L Y+ + +
Sbjct: 13 GRENLYFQGSTALRPYHDV-LSQWQRHYNADRNR----------------------WHSA 49
Query: 345 ECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGL 404
N + + ++L +L L D AFR L
Sbjct: 50 WRQANSNNPQIETRTGRALKATADLLEDATQPGRVAL---ELRSVP--LPQFPDQAFR-L 103
Query: 405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 464
S L+ + + L +P + + LE L + +N L A L+ L+ L I
Sbjct: 104 SHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACP 161
Query: 465 NLTRV-------RKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT 516
LT + L NL++L L ++ + + L NL L ++ + +
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-IANLQNLKSLKIRNSPLS 219
Query: 517 SFSESMLAWPELRTIDIAENPIECGCNIL 545
+ ++ P+L +D+ GC L
Sbjct: 220 ALGPAIHHLPKLEELDL------RGCTAL 242
Score = 52.6 bits (127), Expect = 1e-07
Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 25/221 (11%)
Query: 46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIP--IGGFEPQEKLVELQLNHN- 102
+Q + + + + + + L+ + L+ +P I +L EL +
Sbjct: 105 HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLN---RLRELSIRACP 161
Query: 103 --KHFPQQIVCSIISPRRVEI--------FGQNRISRIDQACFEGLTALRILYLDDNQLR 152
P+ + S + + I + A L L+ L + ++ L
Sbjct: 162 ELTELPEPL-ASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLS 219
Query: 153 SVPTPSFIYLGMLAELRV-GLNVFTTLADGAFNGLGRLSALDLRGA-GLTNISDNAFRGL 210
++ P+ +L L EL + G F G L L L+ L + + L
Sbjct: 220 ALG-PAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLD-IHRL 276
Query: 211 SGLRSLVLTDN-RLQSIPTKQLSKLTRLEELEIGQNGFSML 250
+ L L L L +P +++L + + + + L
Sbjct: 277 TQLEKLDLRGCVNLSRLP-SLIAQLPANCIILVPPHLQAQL 316
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 71.5 bits (175), Expect = 3e-13
Identities = 55/311 (17%), Positives = 104/311 (33%), Gaps = 31/311 (9%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
L NL +P + P I L ++ N + ++ SL+++D +P E
Sbjct: 65 QLNRLNLSSLPDNLPPQITVLEITQNALISLPELPA---SLEYLDACDNRLSTLP----E 117
Query: 90 PQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
L L +++N+ P+ + N+++ + E T+L +L +
Sbjct: 118 LPASLKHLDVDNNQLTMLPELP-ALL----EYINADNNQLTMLP----ELPTSLEVLSVR 168
Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG---RLSALDLRGAGLTNISD 204
+NQL +P L L V N+ +L R +T+I +
Sbjct: 169 NNQLTFLPE----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE 224
Query: 205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 264
N L +++L DN L S + LS+ T + + FSM + L
Sbjct: 225 N-ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283
Query: 265 EITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSF 324
+ E + L + + + + + ++
Sbjct: 284 VTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSD-----TVSARNTSGFREQVAAW 338
Query: 325 SESMLAWPELR 335
E + A ELR
Sbjct: 339 LEKLSASAELR 349
Score = 67.3 bits (164), Expect = 6e-12
Identities = 42/225 (18%), Positives = 82/225 (36%), Gaps = 32/225 (14%)
Query: 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
+N + + C + L L+ L S+P + + L + N +L +
Sbjct: 46 RNEAVSLLKECL--INQFSELQLNRLNLSSLP-DNL--PPQITVLEITQNALISLPE--- 97
Query: 184 NGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
L LD L+ + + + L+ L + +N+L +P LE +
Sbjct: 98 -LPASLEYLDACDNRLSTLPEL----PASLKHLDVDNNQLTMLP----ELPALLEYINAD 148
Query: 244 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKTIEE 302
N +ML + L+ L + LT + + +LE L ++ N L+++
Sbjct: 149 NNQLTMLPE----LPTSLEVLSVRNN-QLTFL-----PELPESLEALDVSTN-LLESLPA 197
Query: 303 --GALVGLPNLY-HLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
+EN T E++L+ TI + +NP+
Sbjct: 198 VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242
Score = 66.1 bits (161), Expect = 1e-11
Identities = 56/424 (13%), Positives = 116/424 (27%), Gaps = 68/424 (16%)
Query: 26 DPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIP- 84
+ + ++ L L+ + ++ +P + ++++ + +P
Sbjct: 40 ALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLPE 97
Query: 85 -IGGFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTAL 141
L L N+ P+ S + +++ N+++ + E L
Sbjct: 98 LPAS------LEYLDACDNRLSTLPELPA----SLKHLDVDN-NQLTMLP----ELPALL 142
Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
+ D+NQL +P L L V N T L + L ALD+ L +
Sbjct: 143 EYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE----LPESLEALDVSTNLLES 194
Query: 202 ISDNAFRGLS---GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
+ R +NR+ IP + + L + + N S
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQQ 253
Query: 259 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKE 318
+ N L ++ + + + +
Sbjct: 254 TAQPDY----HGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHA 309
Query: 319 NAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSL 378
N F++F + + R + WL ++ +
Sbjct: 310 NTFSAFLDRLSDTVSARNTSGFREQVAA-----WLEKL-------------------SAS 345
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT-------RL 431
L + A + D + LR +L + + L RL
Sbjct: 346 AELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRL 405
Query: 432 EELE 435
E LE
Sbjct: 406 EILE 409
Score = 55.0 bits (132), Expect = 4e-08
Identities = 58/360 (16%), Positives = 106/360 (29%), Gaps = 31/360 (8%)
Query: 172 LNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRG-LSGLRSLVLTDNRLQSIPTKQ 230
N + F+ + L G ++ L L L S+P
Sbjct: 19 YNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPD-- 76
Query: 231 LSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLT 290
+ ++ LEI QN L + L+ L+ + L+ + +L+ L
Sbjct: 77 -NLPPQITVLEITQNALISLPE----LPASLEYLDACD-NRLSTLP----ELPASLKHLD 126
Query: 291 LNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC-GCN 349
++ N +L + E L ++N N T E L + + N +
Sbjct: 127 VDNN-QLTMLPE----LPALLEYINADNNQLTMLPELP---TSLEVLSVRNNQLTFLPEL 178
Query: 350 ILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRS 409
L + V N P C +T+I +N L +
Sbjct: 179 PESLEALDVSTNLLESLPAVPVRN--HHSEETEIF-FRCRENRITHIPEN-ILSLDPTCT 234
Query: 410 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV 469
++L DN L S + LS+ T + + FSM + L +
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294
Query: 470 RKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELR 529
E + L + + + + + ++ E + A ELR
Sbjct: 295 DVSQIWHAFEHEEHANTFSAFLDRLSD-----TVSARNTSGFREQVAAWLEKLSASAELR 349
Score = 49.2 bits (117), Expect = 3e-06
Identities = 44/323 (13%), Positives = 89/323 (27%), Gaps = 74/323 (22%)
Query: 215 SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTR 274
S N + S + E+ + G + + + + +
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQAL-------------PGENRNEAVSLLKECLIN- 59
Query: 275 VRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPEL 334
L LN+ L ++ + P + L + +NA S E L
Sbjct: 60 ----------QFSELQLNRL-NLSSLPDN---LPPQITVLEITQNALISLPELP---ASL 102
Query: 335 RTIDIAENPIEC-GCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGL 393
+D +N + L+ + V N + PA L+Y + L
Sbjct: 103 EYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEY----------INADNNQL 152
Query: 394 TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLS 453
T + + + L L + +N+L +P LE L++ N L A
Sbjct: 153 TMLPEL----PTSLEVLSVRNNQLTFLP----ELPESLEALDVSTNLLESLPA------- 197
Query: 454 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN 513
+ + + P + ++ L + L++N
Sbjct: 198 -----VPVRNHHSEETEIFFRCRENRITHI-----P-------ENILSLDPTCTIILEDN 240
Query: 514 AFTSFSESMLAWPELRTIDIAEN 536
+S L+ +
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPR 263
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 68.1 bits (167), Expect = 6e-13
Identities = 42/226 (18%), Positives = 77/226 (34%), Gaps = 46/226 (20%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 180
I I+++ GL L + + +
Sbjct: 3 IQRPTPINQVF--PDPGLANAVKQNLGKQSVTDLVS------------------------ 36
Query: 181 GAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
L + + + + +++ + + L+ L L+ N++ + L LT+LEEL
Sbjct: 37 --QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDL--SPLKDLTKLEEL 90
Query: 241 EIGQNGFSMLEAGCFKGLS--YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 298
+ +N L LS +L E+ +L NLE L++ N KLK
Sbjct: 91 SVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSL--------IHLKNLEILSIRNN-KLK 141
Query: 299 TIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
+I L L L L+L N T+ + ++ ID+
Sbjct: 142 SIV--MLGFLSKLEVLDLHGNEITNTG-GLTRLKKVNWIDLTGQKC 184
Score = 51.9 bits (125), Expect = 1e-07
Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 51/223 (22%)
Query: 30 NLQEANL------DVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLII 83
N + NL D++ +Q + I+++ + + + +L+ + LSH I
Sbjct: 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHN--QIS 76
Query: 84 PIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPR-----RVEIFGQNRISRIDQACFEGL 138
+ + KL EL +N N+ + ++ N + D L
Sbjct: 77 DLSPLKDLTKLEELSVNRNR-----L--KNLNGIPSACLSRLFLDNNELRDTD--SLIHL 127
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
L IL + +N+L+S+ L +L LDL G
Sbjct: 128 KNLEILSIRNNKLKSIV--------------------------MLGFLSKLEVLDLHGNE 161
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 241
+TN L + + LT + + P K +L ++
Sbjct: 162 ITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202
Score = 48.1 bits (115), Expect = 3e-06
Identities = 38/250 (15%), Positives = 79/250 (31%), Gaps = 68/250 (27%)
Query: 290 TLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGC 348
++ + + + GL N NL + + T L ++ + + I+
Sbjct: 2 SIQRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQKEL--SGVQNFNGDNSNIQSLA 57
Query: 349 NILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLR 408
+ + +L ++L + ++++S + L+ L
Sbjct: 58 GM-------------------------QFFTNL--KELHLSHNQISDLS--PLKDLTKLE 88
Query: 409 SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTR 468
L + NRL+++ + L L + N + L +LK
Sbjct: 89 ELSVNRNRLKNLNG--IPSAC-LSRLFLDNNELRDTD-----SLIHLK------------ 128
Query: 469 VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL 528
NLE L++ N K+ L L L L+L N T+ + ++
Sbjct: 129 ----------NLEILSIRNN---KLKSIVMLGFLSKLEVLDLHGNEITNTG-GLTRLKKV 174
Query: 529 RTIDIAENPI 538
ID+
Sbjct: 175 NWIDLTGQKC 184
Score = 30.8 bits (70), Expect = 0.93
Identities = 12/131 (9%), Positives = 37/131 (28%), Gaps = 35/131 (26%)
Query: 410 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV 469
+ + + L + +G+ + ++ L+
Sbjct: 2 SIQRPTPINQV--FPDPGLANAVKQNLGKQSVT----------------DLVSQKELS-- 41
Query: 470 RKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPEL 528
++ + + ++ + + NL L+L N + S L +L
Sbjct: 42 ---------GVQNFNGDNS-NIQSLA--GMQFFTNLKELHLSHNQISDLSPLKDL--TKL 87
Query: 529 RTIDIAENPIE 539
+ + N ++
Sbjct: 88 EELSVNRNRLK 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 68.2 bits (167), Expect = 8e-13
Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 16/202 (7%)
Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 181
+ I + + L + L+L+ N+L + L L L + N L+
Sbjct: 53 ANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLS-- 106
Query: 182 AFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 241
+ L +L +L L G+++I+ L L SL L +N++ I LS+LT+L+ L
Sbjct: 107 SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLS 162
Query: 242 IGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE 301
+ N S + GL+ L+ L ++ ++++ +R A A NL+ L L
Sbjct: 163 LEDNQISDIVP--LAGLTKLQNLYLSK-NHISDLR--ALAGLKNLDVLELFSQE-CLNKP 216
Query: 302 EGALVGLPNLYHLNLKENAFTS 323
L + + + +
Sbjct: 217 INHQSNLVVPNTVKNTDGSLVT 238
Score = 67.0 bits (164), Expect = 2e-12
Identities = 46/291 (15%), Positives = 102/291 (35%), Gaps = 48/291 (16%)
Query: 200 TNISD-NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
T I + + L + T ++L ++++ + ++ G+
Sbjct: 12 TPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-----GI 64
Query: 259 SYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLK 317
YL + + ++ NL NL L L++N K+K + +L L L L+L+
Sbjct: 65 QYLPNVTKLFLNG-NKLTDIKPLANLKNLGWLFLDEN-KVKDLS--SLKDLKKLKSLSLE 120
Query: 318 ENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKS 377
N + ++ P+L ++ + N I +
Sbjct: 121 HNGISDI-NGLVHLPQLESLYLGNNKITDITVL-------------------------SR 154
Query: 378 LISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 437
L L + L +++I GL+ L++L L+ N + + + L+ L L+ LE+
Sbjct: 155 LTKL--DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF 208
Query: 438 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN 488
L ++ ++ + V +D+ + E + +
Sbjct: 209 SQECLNKPINHQSNLVVPNTVKN---TDGSLVTPEIISDDGDYEKPNVKWH 256
Score = 63.5 bits (155), Expect = 3e-11
Identities = 50/254 (19%), Positives = 92/254 (36%), Gaps = 45/254 (17%)
Query: 286 LETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPI 344
L + T+ +K I + NLK+ + T + L + I + I
Sbjct: 3 LGSETITVPTPIKQIF--SDDAFAETIKDNLKKKSVTDAVTQNEL--NSIDQIIANNSDI 58
Query: 345 ECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGL 404
+ S ++Y L ++ L G LT+I L
Sbjct: 59 K-----------------------SVQGIQY--LPNV--TKLFLNGNKLTDIKP--LANL 89
Query: 405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 464
L L L +N+++ + + L L +L+ L + NG S + L L+ L + G +
Sbjct: 90 KNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYL-GNN 144
Query: 465 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 524
+T + + L+TL+L N +I + L GL L +L L +N + +
Sbjct: 145 KITDIT--VLSRLTKLDTLSLEDN---QISDIVPLAGLTKLQNLYLSKNHISDLRA-LAG 198
Query: 525 WPELRTIDIAENPI 538
L +++
Sbjct: 199 LKNLDVLELFSQEC 212
Score = 63.1 bits (154), Expect = 4e-11
Identities = 45/260 (17%), Positives = 82/260 (31%), Gaps = 49/260 (18%)
Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENP 343
L K + L ++ + + S L P + + + N
Sbjct: 25 ETIKDNLKKK-SVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYL--PNVTKLFLNGNK 79
Query: 344 IECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRG 403
+ + +L +L L + ++S + +
Sbjct: 80 LTDIKPL-------------------------ANLKNL--GWLFLDENKVKDLS--SLKD 110
Query: 404 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 463
L L+SL L N + I L L +LE L +G N + + L+ L L +
Sbjct: 111 LKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLED- 165
Query: 464 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 523
+ ++ + A L+ L L+KN I + AL GL NL L L + +
Sbjct: 166 NQISDIV--PLAGLTKLQNLYLSKN---HISDLRALAGLKNLDVLELFSQECLNKPINHQ 220
Query: 524 ----AWPELRTIDIAENPIE 539
++ D + E
Sbjct: 221 SNLVVPNTVKNTDGSLVTPE 240
Score = 37.7 bits (88), Expect = 0.007
Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 20/166 (12%)
Query: 30 NLQEANL------DVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLII 83
NL L D+ ++ L L N I + + + L+ + L + I
Sbjct: 91 NLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNN--KIT 147
Query: 84 PIGGFEPQEKLVELQLNHNKHFPQQI--VCSIISPRRVEIF--GQNRISRIDQACFEGLT 139
I KL L L N QI + + +++ +N IS + GL
Sbjct: 148 DITVLSRLTKLDTLSLEDN-----QISDIVPLAGLTKLQNLYLSKNHISDLR--ALAGLK 200
Query: 140 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 185
L +L L + + P L + ++ T + +G
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 246
Score = 29.6 bits (67), Expect = 2.4
Identities = 15/131 (11%), Positives = 37/131 (28%), Gaps = 35/131 (26%)
Query: 410 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV 469
+ ++ I + + + + + + + L
Sbjct: 7 TITVPTPIKQIFS--DDAFAETIKDNLKKKSVT----------------DAVTQNELN-- 46
Query: 470 RKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPEL 528
+++ + N + I + LPN+ L L N T + L L
Sbjct: 47 ---------SIDQIIANNS---DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANL--KNL 92
Query: 529 RTIDIAENPIE 539
+ + EN ++
Sbjct: 93 GWLFLDENKVK 103
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 64.8 bits (159), Expect = 2e-12
Identities = 28/191 (14%), Positives = 49/191 (25%), Gaps = 32/191 (16%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
L L +L + + L ++L+ T L A L S L
Sbjct: 3 LPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQ 60
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 257
LT + A L L L + + +L +L+ + L+A
Sbjct: 61 ELTRLKA-AVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTELKA----- 113
Query: 258 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLK 317
+ L L +L ++ A+ LP+
Sbjct: 114 -------AV---GELP-----------EKSKLQEIYQ-ELTQLKA-AVGELPDQSKQQQI 150
Query: 318 ENAFTSFSESM 328
T +
Sbjct: 151 YQELTDLKTAF 161
Score = 54.4 bits (132), Expect = 6e-09
Identities = 24/196 (12%), Positives = 48/196 (24%), Gaps = 37/196 (18%)
Query: 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIP--IGGFEPQEKLVELQLNHN 102
P +L + + +A+ + + + +G + +LQ +
Sbjct: 4 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELP---EKSKLQEIYQ 60
Query: 103 K--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFI 160
+ + G+ L L +L + +
Sbjct: 61 ELTRLKAAV-------------GE-------------LPEKSKLQEIYQELTRLK-AAVG 93
Query: 161 YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTD 220
L ++L+ T L A L S L LT + A L
Sbjct: 94 ELPEKSKLQEIYQELTELKA-AVGELPEKSKLQEIYQELTQLKA-AVGELPDQSKQQQIY 151
Query: 221 NRLQSIPTKQLSKLTR 236
L + +L
Sbjct: 152 QELTDLK-TAFERLGH 166
Score = 52.8 bits (128), Expect = 2e-08
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 6/136 (4%)
Query: 404 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 463
L L L + + +L +L+ + L+A L +L+
Sbjct: 26 LPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRLKAA-VGELPEKSKLQEIY- 82
Query: 464 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 523
LTR+ K A + L +L ++ A+ LP L T ++
Sbjct: 83 QELTRL-KAAVGELPEKSKLQEIYQ-ELTELKA-AVGELPEKSKLQEIYQELTQLKAAVG 139
Query: 524 AWPELRTIDIAENPIE 539
P+ +
Sbjct: 140 ELPDQSKQQQIYQELT 155
Score = 50.5 bits (122), Expect = 1e-07
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 6/136 (4%)
Query: 404 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 463
L L L + + +L +L+ + L+A L +L+
Sbjct: 3 LPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRLKAA-VGELPEKSKLQEIY- 59
Query: 464 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 523
LTR+ K A + L +L ++ A+ LP L T ++
Sbjct: 60 QELTRL-KAAVGELPEKSKLQEIYQ-ELTRLKA-AVGELPEKSKLQEIYQELTELKAAVG 116
Query: 524 AWPELRTIDIAENPIE 539
PE + +
Sbjct: 117 ELPEKSKLQEIYQELT 132
Score = 49.4 bits (119), Expect = 4e-07
Identities = 29/221 (13%), Positives = 49/221 (22%), Gaps = 57/221 (25%)
Query: 210 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 269
L L L + + +L +L+ + L+A L +L+
Sbjct: 3 LPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRLKAA-VGELPEKSKLQEIY- 59
Query: 270 SNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESML 329
LTR+ K A + L +L ++ A+ LP L T ++
Sbjct: 60 QELTRL-KAAVGELPEKSKLQEIYQ-ELTRLKA-AVGELPEKSKLQEIYQELTELKAAVG 116
Query: 330 AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCA 389
PE + L L A
Sbjct: 117 ELPEKSKLQEIYQ----------------------------------ELTQLKAA----- 137
Query: 390 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTR 430
L L + +L
Sbjct: 138 -----------VGELPDQSKQQQIYQELTDLK-TAFERLGH 166
Score = 43.6 bits (104), Expect = 3e-05
Identities = 26/238 (10%), Positives = 47/238 (19%), Gaps = 81/238 (34%)
Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
L +L ++ A+ LP L T ++ PE +
Sbjct: 5 EKSKLQEIYQ-ELTRLKA-AVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ-- 60
Query: 345 ECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGL 404
L L A L
Sbjct: 61 --------------------------------ELTRLKAA----------------VGEL 72
Query: 405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 464
L L + + +L +L+ + L+A +
Sbjct: 73 PEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTELKA------------AV---G 116
Query: 465 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM 522
L L +L ++ A+ LP+ T +
Sbjct: 117 ELP-----------EKSKLQEIYQ-ELTQLKA-AVGELPDQSKQQQIYQELTDLKTAF 161
Score = 40.1 bits (95), Expect = 5e-04
Identities = 28/212 (13%), Positives = 51/212 (24%), Gaps = 56/212 (26%)
Query: 233 KLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN 292
+L +L+ + L+A L +L+ LTR+ K A + L
Sbjct: 2 ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIY-QELTRL-KAAVGELPEKSKLQEI 58
Query: 293 KNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILW 352
+L ++ + LP L T ++ PE +
Sbjct: 59 YQ-ELTRLKAA-VGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ---------- 106
Query: 353 LREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVL 412
L L A +G L L
Sbjct: 107 ------------------------ELTELKAA-VG----ELPE-----------KSKLQE 126
Query: 413 TDNRLQSIPTKQLSKLTRLEELEIGQNGFSML 444
L + + +L + + + L
Sbjct: 127 IYQELTQLK-AAVGELPDQSKQQQIYQELTDL 157
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 64.6 bits (158), Expect = 2e-12
Identities = 30/97 (30%), Positives = 47/97 (48%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N++ + F+ LT L L L NQ++S+P F L L L + N +L +G F+
Sbjct: 38 NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD 97
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN 221
L +L L L L ++ D F L+ L+ + L N
Sbjct: 98 KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 63.8 bits (156), Expect = 4e-12
Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 365 VFCNSPAPLKYKSL------ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 418
+ CNS K L I SA L L ++ F L+ L L L+ N++Q
Sbjct: 12 IRCNS------KGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ 65
Query: 419 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL 478
S+P KLT+L L + +N L G F L+ LK L + + L V G F D L
Sbjct: 66 SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIF-DRL 123
Query: 479 -NLETLTLNKNP 489
+L+ + L+ NP
Sbjct: 124 TSLQKIWLHTNP 135
Score = 62.7 bits (153), Expect = 1e-11
Identities = 33/107 (30%), Positives = 58/107 (54%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
++ L L+ N+L+S+P F L L +L + N +L DG F+ L +L+ L L
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L ++ + F L+ L+ L L N+L+S+P +LT L+++ + N
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 60.7 bits (148), Expect = 5e-11
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN-L 272
L L N+LQS+P KLT+L +L + QN L G F L+ L L + N L
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL--HENKL 88
Query: 273 TRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319
+ G F D L L+ L L+ N +LK++ +G L +L + L N
Sbjct: 89 QSLPNGVF-DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 60.7 bits (148), Expect = 5e-11
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 27/129 (20%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
L + N +L G F+ L +L+ L L + ++ D F L+ L L L +N+LQS+P
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL-NL 286
KLT+L+EL + N L V G F D L +L
Sbjct: 93 NGVFDKLTQLKELALDTN-------------------------QLKSVPDGIF-DRLTSL 126
Query: 287 ETLTLNKNP 295
+ + L+ NP
Sbjct: 127 QKIWLHTNP 135
Score = 45.3 bits (108), Expect = 1e-05
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 29/144 (20%)
Query: 28 SCNLQEAN-----LDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLS-LQHVDLSHTTWL 81
SC+ E L +P+ S RL L +N+++++ + L+ L + LS
Sbjct: 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ 65
Query: 82 IIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTAL 141
+P G F+ KL L L+ NK + S+ P V F+ LT L
Sbjct: 66 SLPDGVFDKLTKLTILYLHENK------LQSL--PNGV---------------FDKLTQL 102
Query: 142 RILYLDDNQLRSVPTPSFIYLGML 165
+ L LD NQL+SVP F L L
Sbjct: 103 KELALDTNQLKSVPDGIFDRLTSL 126
Score = 32.2 bits (74), Expect = 0.25
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 272 LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTS 323
L + G F L L+L++N +++++ +G L L L L EN S
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQS 90
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.3 bits (166), Expect = 5e-12
Identities = 97/625 (15%), Positives = 187/625 (29%), Gaps = 195/625 (31%)
Query: 25 RDPSCN-LQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQH------VDLSH 77
+ C +Q+ ++ S I +++S + + LS Q V+
Sbjct: 31 DNFDCKDVQDMPKSIL---SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 78 TT---WLIIPIGGFEPQEKLVELQL---NHNKHFPQQIVCSIISPRRVEIFGQNRISRID 131
+L+ PI E ++ + ++ ++ + ++F + +SR+
Sbjct: 88 RINYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLY-----------NDNQVFAKYNVSRLQ 135
Query: 132 QACFEGLTALRI-LYLDDNQLRSVPTPSFIYL-GMLAELRVGLNVF--TTLADGAFNGLG 187
LR L +LR + + G+L G T +A
Sbjct: 136 P-----YLKLRQALL----ELRPAK---NVLIDGVL-----G---SGKTWVALDVCLSYK 175
Query: 188 RLSALDLR----GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
+D + N + L L + D S + R+ +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSI--- 230
Query: 244 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKG----AFADNLNLETLTLNKNPKLKT 299
Q L K Y L + L V+ AF NL+ + L + ++
Sbjct: 231 QAELRRL----LKSKPYENCLLV-----LLNVQNAKAWNAF--NLSCKILLTTRFKQVTD 279
Query: 300 IEEGALVGLPNLYHLNLKEN--AFTSF-SESMLA-WPELRTIDIAENPIE-CGCN----- 349
+ H++L + T +S+L + + R D+ P E N
Sbjct: 280 F-----LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PREVLTTNPRRLS 331
Query: 350 ILW--LREMLVR-RNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSG 406
I+ +R+ L N V C+ K ++I S L + +R +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCD-----KLTTIIESS----------LNVLEPAEYRKM-- 374
Query: 407 LRSL-VLTDNRLQSIPTKQLSKL---TRLEELEIGQNGF---SMLEAGCFKGLSYLKRLE 459
L V + IPT LS + ++ + N S++E + +
Sbjct: 375 FDRLSVFPPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI---- 428
Query: 460 ITGASNLTRVRKGAFADNLNLETLTLNKN-PKL--KIIEEDAL--------VGLPNL--- 505
++ LE +N L I++ + + P L
Sbjct: 429 ----------------PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 506 ------YHLNLKENA--FTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTS 557
+HL E+ T F L + R +L + + R +++
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFL---DFR----------------FLEQKI-RHDST 512
Query: 558 AVFCNSPAPL--------KYKSLIS 574
A N+ + YK I
Sbjct: 513 A--WNASGSILNTLQQLKFYKPYIC 535
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 61.0 bits (148), Expect = 1e-11
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 307 GLP-NLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSA 364
P + L L N T+ +L P LRT + NP C C ++ LR L R A
Sbjct: 28 AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA 87
Query: 365 ----VFCNSPAPLKYKSLISLSAEDLGCAGA 391
+ C +P L+ + L L+ ++L A A
Sbjct: 88 PYRDLRCVAPPALRGRLLPYLAEDELRAACA 118
Score = 56.4 bits (136), Expect = 6e-10
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 501 GLP-NLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSA 558
P + L L N T+ +L P LRT + NP C C ++ LR L R A
Sbjct: 28 AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA 87
Query: 559 ----VFCNSPAPLKYKSLISLSAEDL 580
+ C +P L+ + L L+ ++L
Sbjct: 88 PYRDLRCVAPPALRGRLLPYLAEDEL 113
Score = 40.9 bits (96), Expect = 2e-04
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 388 CAGAGLTNISDNAFRGL-SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 446
C GLT S LVLT N L ++P L L L +G N +
Sbjct: 15 CGRRGLTWASLPT--AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW----- 67
Query: 447 GCFKGLSYLKR 457
C L L+
Sbjct: 68 RCDCRLVPLRA 78
Score = 39.0 bits (91), Expect = 8e-04
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 211 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
LVLT N L ++P L L L +G N + C L L+
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW-----RCDCRLVPLRA 78
Score = 34.0 bits (78), Expect = 0.038
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 173
L L N L ++P L L +G N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 30.9 bits (70), Expect = 0.41
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLR 152
N ++ + + L ALR +L N R
Sbjct: 41 NNLTALPPGLLDALPALRTAHLGANPWR 68
Score = 29.8 bits (67), Expect = 1.00
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 56 RIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIIS 115
++ +A P+ + L+ +P G + L L N P + C ++
Sbjct: 21 TWASLPTAFPV--DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN---PWRCDCRLVP 75
Query: 116 PRRVEIFGQNRISRIDQACFEGLTALR---ILYLDDNQLRSVPTPS 158
R + G+ + ALR + YL +++LR+ P
Sbjct: 76 LRA-WLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDELRAACAPG 120
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 61.8 bits (150), Expect = 1e-10
Identities = 43/293 (14%), Positives = 91/293 (31%), Gaps = 25/293 (8%)
Query: 254 CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYH 313
C S K + + L + +LE L + + + ++ +L
Sbjct: 13 CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72
Query: 314 LNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNT-SAVFCNSPAP 372
L ++ S LR + I+ L+E+ + +
Sbjct: 73 LTVRAARIPSRILFGA----LRVLGISG-----------LQELTLENLEVTGTAPPPLLE 117
Query: 373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 432
L L+ ++ A +++ GL+ L + + +Q+ L
Sbjct: 118 ATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176
Query: 433 ELEIGQNGFS----MLEAGCFKGLSYLKRLEITGAS--NLTRVRKGAFADNLNLETLTLN 486
L++ N ++ A C L+ L + A + V A + L+ L L+
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236
Query: 487 KNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 539
N + L LNL + + +L +D++ N ++
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD 287
Score = 60.7 bits (147), Expect = 3e-10
Identities = 41/231 (17%), Positives = 77/231 (33%), Gaps = 22/231 (9%)
Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
+ ++ L L +R+ PS I G L L + TL + G L+
Sbjct: 59 GQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118
Query: 195 RGAGLT--NISDNAFRGL------------SGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
G L N+ + ++ GL+ L + + +Q+ L L
Sbjct: 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178
Query: 241 EIGQNGFS----MLEAGCFKGLSYLKRLEITGAS--NLTRVRKGAFADNLNLETLTLNKN 294
++ N ++ A C L+ L + A + V A + L+ L L+ N
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238
Query: 295 PKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 345
+ L LNL + + +L +D++ N ++
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD 287
Score = 59.5 bits (144), Expect = 8e-10
Identities = 35/229 (15%), Positives = 67/229 (29%), Gaps = 33/229 (14%)
Query: 28 SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIP-----IYLSLQHVDLSHTTWLI 82
+ + + + P + L L T D+ + + L+ + ++ L
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163
Query: 83 IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALR 142
L L L+ N I C L+
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPE-------------------LGERGLISALCPLKFPTLQ 204
Query: 143 ILYLDDNQLRSVPTP---SFIYLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLRGAG 198
+L L + + + L L + N + + +L++L+L G
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
L + + L L L+ NRL P +L ++ L + N F
Sbjct: 265 LKQVPKGLP---AKLSVLDLSYNRLDRNP--SPDELPQVGNLSLKGNPF 308
Score = 53.7 bits (129), Expect = 6e-08
Identities = 48/288 (16%), Positives = 84/288 (29%), Gaps = 58/288 (20%)
Query: 46 SIQRLVLSTNRIKTVDSAIPI----YLSLQHVDLS--HTTWLIIPIGGFEPQEKLVELQL 99
S++RL + RI + + LQ + L T P L L L
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 100 NHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 159
+ R + + + L++L + +
Sbjct: 129 RNVSW-------------------ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169
Query: 160 IYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLT 219
L+ L + N IS L+ L L
Sbjct: 170 RVFPALSTLDLSDNPELG--------------------ERGLISALCPLKFPTLQVLALR 209
Query: 220 DNRLQSIP---TKQLSKLTRLEELEIGQNGFS-MLEAGCFKGLSYLKRLEITGASN-LTR 274
+ +++ + + +L+ L++ N A S L L + + L +
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL--SFTGLKQ 267
Query: 275 VRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT 322
V KG A L L L+ N +L + LP + +L+LK N F
Sbjct: 268 VPKGLPA---KLSVLDLSYN-RLDRNP--SPDELPQVGNLSLKGNPFL 309
Score = 53.0 bits (127), Expect = 1e-07
Identities = 52/317 (16%), Positives = 92/317 (29%), Gaps = 58/317 (18%)
Query: 209 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 268
G S L D + K L+ L + + + L+
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101
Query: 269 ASNLTRVRKG----AFADNLNLETLTLNKN---PKLKTIEEGALVGLPNLYHLNLKENAF 321
NL A +L L L + + E P L L++ +
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161
Query: 322 TSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLIS 380
+FS + P L T+D+++NP ++ PLK+ +L
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPE----------------LGERGLISALCPLKFPTLQV 205
Query: 381 LSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQN 439
L+ + G + + L+ L L+ N L+ ++L L +
Sbjct: 206 LALRNAG--METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263
Query: 440 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDAL 499
G + G L L L+ N ++ +
Sbjct: 264 GLKQVPKGLPA----------------------------KLSVLDLSYN---RLDRNPSP 292
Query: 500 VGLPNLYHLNLKENAFT 516
LP + +L+LK N F
Sbjct: 293 DELPQVGNLSLKGNPFL 309
Score = 49.5 bits (118), Expect = 1e-06
Identities = 54/270 (20%), Positives = 92/270 (34%), Gaps = 46/270 (17%)
Query: 188 RLSALDLRGAGLTNISDN---AFRGLSGLRSLVLTDNRLQSIPTKQLSKLT--RLEELEI 242
L L +R A + + G+SGL+ L L + + L + T L L +
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 243 GQNGFSMLEAGCFKGLSY----LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 298
++ +A + + LK L I ++ L TL L+ NP+L
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELG 187
Query: 299 TI---EEGALVGLPNLYHLNLKENAFTSFSESMLAW----PELRTIDIAENPIECGCNIL 351
+ P L L L+ + S A +L+ +D++ N +
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL------- 240
Query: 352 WLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLV 411
R A C+ P+ L +L + GL + + L L
Sbjct: 241 -------RDAAGAPSCDWPSQLNSLNL----------SFTGLKQVPKGLP---AKLSVLD 280
Query: 412 LTDNRLQSIPTKQLSKLTRLEELEIGQNGF 441
L+ NRL P +L ++ L + N F
Sbjct: 281 LSYNRLDRNP--SPDELPQVGNLSLKGNPF 308
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 59.0 bits (143), Expect = 2e-09
Identities = 43/326 (13%), Positives = 93/326 (28%), Gaps = 83/326 (25%)
Query: 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT 235
++ AF ++ + L GL +I D AF S ++ +V L+ +
Sbjct: 125 KSIPKDAFRNSQ-IAKVVL-NEGLKSIGDMAFFN-STVQEIVFPST-LEQLKEDIFYYCY 180
Query: 236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 295
L++ ++ + + L A F ++ + + L + AF L+T+ + +N
Sbjct: 181 NLKKADLSKTKITKLPASTFVYAG-IEEVLLP--VTLKEIGSQAFLKTSQLKTIEIPEN- 236
Query: 296 KLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE------CGCN 349
+ TI + A F ES + T+ + C
Sbjct: 237 -VSTIGQEA-------------------FRES-----GITTVKLPNGVTNIASRAFYYCP 271
Query: 350 ILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAG-------AGLTNISDNAFR 402
L S +++I GC + +
Sbjct: 272 EL----------AEVTTYGSTFNDDPEAMIHPYC-LEGCPKLARFEIPESIRILGQGLLG 320
Query: 403 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 462
G + L + N + I F + +K +++ G
Sbjct: 321 GNRKVTQLTIPAN-VTQI------------------------NFSAFNN-TGIKEVKVEG 354
Query: 463 ASNLTRVRKGAFADNLNLETLTLNKN 488
+ K + ++ + +
Sbjct: 355 TTPPQVFEKVWYGFPDDITVIRVPAE 380
Score = 47.8 bits (114), Expect = 6e-06
Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
L + ++ F L+ L+ ++ +P +EE+ + + + F
Sbjct: 167 TLEQLKEDIFYYCYNLKKADLSKTKITKLP-ASTFVYAGIEEVLLP-VTLKEIGSQAFLK 224
Query: 452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 511
S LK +EI N++ + + AF ++ + T+ L + I A P L +
Sbjct: 225 TSQLKTIEI--PENVSTIGQEAFRES-GITTVKLPNG--VTNIASRAFYYCPELAEVTTY 279
Query: 512 EN 513
+
Sbjct: 280 GS 281
Score = 39.3 bits (92), Expect = 0.003
Identities = 16/178 (8%), Positives = 42/178 (23%), Gaps = 48/178 (26%)
Query: 127 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 186
++ I F +L V T + + G
Sbjct: 259 VTNIASRAFYYCP----------ELAEVTTYGST---------FNDDPEAMIHPYCLEGC 299
Query: 187 GRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG 246
+L+ ++ + + G + L + N + I
Sbjct: 300 PKLARFEI-PESIRILGQGLLGGNRKVTQLTIPAN-VTQI-------------------- 337
Query: 247 FSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGA 304
F + +K +++ G + K + ++ + + + A
Sbjct: 338 ----NFSAFNN-TGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE--SVEKYKNA 388
Score = 35.1 bits (81), Expect = 0.064
Identities = 20/168 (11%), Positives = 56/168 (33%), Gaps = 20/168 (11%)
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLT------------DNRLQSIPTKQLS 426
++ +D +T+ + F + +T + L+
Sbjct: 50 VTGKYDDGKQRPVKVTSEQISGFSSSVPVDKQEVTITIEGKQKSFSVHISPVRVENGVLT 109
Query: 427 KLTR-LEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTL 485
++ + E+ + N + F+ S + ++ + L + AF ++ ++ +
Sbjct: 110 EILKGYNEIILP-NSVKSIPKDAFRN-SQIAKVVLN--EGLKSIGDMAFFNS-TVQEIVF 164
Query: 486 NKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 533
L+ ++ED NL +L + T S + + + +
Sbjct: 165 PST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL 210
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 4e-09
Identities = 100/572 (17%), Positives = 163/572 (28%), Gaps = 185/572 (32%)
Query: 139 TALRILYLDDNQLR---SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR----LSA 191
+ R L L L VPT SF L E F + G +
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQE------QFNKILPEPTEGFAADDEPTTP 57
Query: 192 LDLRGAGLTNISD-------NAFR-----GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEE 239
+L G L +S F L+ + L N + ++ +KL + +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL----AAKLLQEND 113
Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKT 299
+ + +++ +Y+ + + A + N +L
Sbjct: 114 TTLVKT-KELIK-------NYITARIMAK-RPFDKKSNSALFRAVG------EGNAQLVA 158
Query: 300 I-----------EEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGC 348
I EE L L YH+ + + FS L +RT AE G
Sbjct: 159 IFGGQGNTDDYFEE--LRDLYQTYHVLVGD--LIKFSAETL-SELIRTTLDAEKVFTQGL 213
Query: 349 NIL-WLREMLVRRNTS--------------------AVFCN----SPAPLKYKSLISLS- 382
NIL WL + V +P L+ L +
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR-SYLKGATG 272
Query: 383 -AEDL----GCAGAG----LTNISDNAFRGL--SGLRSLVLTDNRLQSIPTKQLSKLTRL 431
++ L A A L G+R ++ P L
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC-------YEAYPNTSLPPSILE 325
Query: 432 EELEIGQNGFS-MLEAGCFKGLS-------------YL---KRLEIT---GASNL----- 466
+ LE + S ML L+ +L K++EI+ GA NL
Sbjct: 326 DSLENNEGVPSPML---SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 467 --------TRVRKGAFADNLNLETLTLNKNP----KLKIIEEDALVGLPNLYH---LN-- 509
+RK L+ ++ P KLK V P +H L
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLD-----QSRIPFSERKLKFSNRFLPVASP--FHSHLLVPA 435
Query: 510 -------LKENAFTSFSESMLAWP--------ELRTID--IAENPIECGCN--ILWLREM 550
L +N SF+ + P +LR + I+E ++C + W E
Sbjct: 436 SDLINKDLVKNNV-SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW--ET 492
Query: 551 LVRRNTSAV--FCNSPAPLKYKSLISLSAEDL 580
+ + + F P L L+ +
Sbjct: 493 TTQFKATHILDF----GPGGASGLGVLTHRNK 520
Score = 51.2 bits (122), Expect = 9e-07
Identities = 58/294 (19%), Positives = 100/294 (34%), Gaps = 105/294 (35%)
Query: 281 ADNLNLETLTLN------KNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPEL 334
ADN +T + NP TI G G ++EN +++ + +L
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK------RIREN-YSAMIFETIVDGKL 1701
Query: 335 RTIDIAENPIECGCNILWL--REMLVR-RNTS-AVFCNSPAP---LKYKSLI-------- 379
+T I + E + + + +L + T A+ A LK K LI
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 380 -SL---SAEDLGCAGAGLTNISDNA----FRGLSGLRSLVLTDNRLQSI-------PTKQ 424
SL +A L + A + +I +RG++ ++ V D +S P +
Sbjct: 1762 HSLGEYAA--L-ASLADVMSIESLVEVVFYRGMT-MQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 425 LSKLTR--LEEL--EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN- 479
+ ++ L+ + +G+ G +EI V N N
Sbjct: 1818 AASFSQEALQYVVERVGK------RTGWL--------VEI--------V-------NYNV 1848
Query: 480 -------------LETLT--LN--KNPKLKIIEEDALVGLPNLYHL-NLKENAF 515
L+T+T LN K K+ IIE L L ++ + F
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE------LQKSLSLEEVEGHLF 1896
Score = 45.8 bits (108), Expect = 4e-05
Identities = 61/327 (18%), Positives = 102/327 (31%), Gaps = 102/327 (31%)
Query: 129 RIDQACFE--GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN----VFTTLADGA 182
R D + G + L I+ +N P I+ G R+ N +F T+ DG
Sbjct: 1648 RADNHFKDTYGFSILDIV--INN-----PVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 183 FNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELE 241
++ T FR GL L T Q ++ + + L+
Sbjct: 1701 LKTEKIFKEINEHSTSYT------FRSEKGL--LSATQF-TQPALTLMEKAAFEDLKS-- 1749
Query: 242 IGQNGFSMLEAGCFKGLSYLKRL-EITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTI 300
G +A F G S L E A L + AD +++E+ +
Sbjct: 1750 ---KGLIPADA-TFAGHS----LGEYA-A--LA-----SLADVMSIES----------LV 1783
Query: 301 EEGALV---GLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREM 356
E +V G+ + + + + M+A P ++ ++ E
Sbjct: 1784 E---VVFYRGM--TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV------ER 1832
Query: 357 LVRRNTSAV----FCNSPAPLKYKSLISLSAEDLG----CAGAGLTNISDNAFRGLSGLR 408
+ +R V + N AG R L +
Sbjct: 1833 VGKRTGWLVEIVNY-NVE----------------NQQYVAAGD---------LRALDTV- 1865
Query: 409 SLVLTDNRLQSIPTKQLSKLTRLEELE 435
+ VL +LQ I +L K LEE+E
Sbjct: 1866 TNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Score = 35.8 bits (82), Expect = 0.042
Identities = 46/246 (18%), Positives = 78/246 (31%), Gaps = 75/246 (30%)
Query: 9 LRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSH-------SNPSIQRLVLSTNRIKTVD 61
+R P S + S E +PS + +Q V TN +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEG----VPSPMLSISNLTQEQVQDYVNKTN--SHLP 361
Query: 62 SAIPIYLSL-----QHVDLSHTTWLIIPIGGFEPQEKLVELQLN-HNKHFPQQIVCSII- 114
+ + +SL V + G P + L L L P + S I
Sbjct: 362 AGKQVEISLVNGAKNLV-----------VSG--PPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 115 -SPRRVEIFGQNR---IS-------------RIDQAC------FEGLTALRI-LY--LDD 148
S R+++ NR ++ I++ F ++I +Y D
Sbjct: 409 FSERKLKF--SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA-KDIQIPVYDTFDG 465
Query: 149 NQLRSVP---TPSFIYLGMLAELRV---GLNVF--TTLAD---GAFNGLGRLSALDLRGA 197
+ LR + + + + L V F T + D G +GLG L+ + G
Sbjct: 466 SDLRVLSGSISERIVD--CIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Query: 198 GLTNIS 203
G+ I
Sbjct: 524 GVRVIV 529
Score = 33.9 bits (77), Expect = 0.17
Identities = 45/247 (18%), Positives = 67/247 (27%), Gaps = 113/247 (45%)
Query: 103 KHFPQQIVCSII-----SPRRVEI-FG--------QNRISRIDQACFEGLTALRILYLDD 148
HF SI+ +P + I FG +N + I + +G ++ +
Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 149 NQLRSVPTPSFIYLGMLAELR-----------VGLNVFTTL-------ADGAFNG--LGR 188
N+ + S+ + L + F L AD F G LG
Sbjct: 1711 NE----HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766
Query: 189 LSAL----------DL------RG-----------AGLTNIS------------------ 203
+AL L RG G +N
Sbjct: 1767 YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 204 -------------------DNAFRG----LSG-LRSL-----VLTDNRLQSIPTKQLSKL 234
N +G LR+L VL +LQ I +L K
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNV-ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
Query: 235 TRLEELE 241
LEE+E
Sbjct: 1886 LSLEEVE 1892
Score = 31.2 bits (70), Expect = 1.4
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 13/42 (30%)
Query: 82 IIPIGGFEPQEKLVE---------LQL-NHNKHFP-QQIVCS 112
+ E + +VE +++ N+N QQ V +
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNYN--VENQQYVAA 1856
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 56.7 bits (137), Expect = 6e-09
Identities = 42/290 (14%), Positives = 81/290 (27%), Gaps = 55/290 (18%)
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 257
+N+ + +G L ++L++ +++I L+ +I + L
Sbjct: 88 AFSNVVNGVTKGKQTLEKVILSEK-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALAD 146
Query: 258 ---LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHL 314
++ R AF + LET + +E+ + +
Sbjct: 147 SVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA--MGKLEDEIMKAGLQPRDI 204
Query: 315 NLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLK 374
N + I L S +
Sbjct: 205 NFLTIEGKLD-------------NADFKLIRDYMPNL----------VSLDISKT----- 236
Query: 375 YKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE-E 433
T I D F L + L N L++I + S RL
Sbjct: 237 -----------------NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278
Query: 434 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETL 483
LE+ + +E G F G L+ + TG +T + F + + + +
Sbjct: 279 LELP-ASVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLI 326
Score = 54.4 bits (131), Expect = 4e-08
Identities = 40/274 (14%), Positives = 78/274 (28%), Gaps = 34/274 (12%)
Query: 229 KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLET 288
L L + EI K Y+ A + V G LE
Sbjct: 49 PSLKVLD-ISNAEIKMYSGKAGTYPNGKFYIYMA--NFVPAYAFSNVVNGVTKGKQTLEK 105
Query: 289 LTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGC 348
+ L++ +K IE+ A G NL +++ + E
Sbjct: 106 VILSEK--IKNIEDAAFKGCDNLKICQIRKK--------------TAPNLLP----EALA 145
Query: 349 NILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLR 408
+ + + + + + F N + L + + D + R
Sbjct: 146 DSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQ---VGAMGKLEDEIMKAGLQPR 202
Query: 409 SLVLTDNRLQSIPTK----QLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 464
+ + + L L+I + + + F YL ++++
Sbjct: 203 DINFLTI-EGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP--H 259
Query: 465 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDA 498
NL + + F++ L TL + IE A
Sbjct: 260 NLKTIGQRVFSNCGRL-AGTLELPASVTAIEFGA 292
Score = 48.6 bits (116), Expect = 2e-06
Identities = 39/257 (15%), Positives = 76/257 (29%), Gaps = 44/257 (17%)
Query: 175 FTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT----KQ 230
F+ + +G G L + L + NI D AF+G L+ + ++
Sbjct: 89 FSNVVNGVTKGKQTLEKVIL-SEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADS 147
Query: 231 LSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLT 290
++ + + E F L+ + ++ L +
Sbjct: 148 VTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE--TTIQVGAMGKLEDEIMKAGLQPRDIN 205
Query: 291 LNKNPKLKTIEEGA----LVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIE 345
++ +PNL L++ + T+ + A L I + N
Sbjct: 206 FLTIEG--KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKT 263
Query: 346 CGCNILWLREMLVRRNTSAVF--CNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRG 403
G VF C L + A +T I AF G
Sbjct: 264 IGQR---------------VFSNCGR---LAGTLEL----------PASVTAIEFGAFMG 295
Query: 404 LSGLRSLVLTDNRLQSI 420
LR ++ T +++ ++
Sbjct: 296 CDNLRYVLATGDKITTL 312
Score = 46.7 bits (111), Expect = 1e-05
Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 10/170 (5%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
+R + F L + + ++ L + L + F
Sbjct: 162 RFKNRWEHFAFIEGEPLETTIQVGA-MGKLEDEIMKAGLQPRDINF-LTIEGKLDNADFK 219
Query: 185 GLGR----LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE-E 239
+ L +LD+ T I D F L + L N L++I + S RL
Sbjct: 220 LIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278
Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETL 289
LE+ + +E G F G L+ + TG +T + F + + + +
Sbjct: 279 LELP-ASVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLI 326
Score = 43.2 bits (102), Expect = 2e-04
Identities = 23/158 (14%), Positives = 51/158 (32%), Gaps = 16/158 (10%)
Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
+N+ + +G L ++L++ +++I L+ +I + L
Sbjct: 88 AFSNVVNGVTKGKQTLEKVILSEK-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALAD 146
Query: 452 ---LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 508
++ R AF + LET + +E++ + +
Sbjct: 147 SVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA--MGKLEDEIMKAGLQPRDI 204
Query: 509 N-------LKENAFTSFSESMLAWPELRTIDIAENPIE 539
N L F + M P L ++DI++
Sbjct: 205 NFLTIEGKLDNADFKLIRDYM---PNLVSLDISKTNAT 239
Score = 30.5 bits (69), Expect = 1.6
Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 8/128 (6%)
Query: 389 AGAGLTNISDNAFRGLSGLR---SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
G ++ +++ ++ L L D R L L + EI
Sbjct: 12 PGTLISMMTEEEANSITHLTLTGKLNAEDFRHLRDEFPSLKVLD-ISNAEIKMYSGKAGT 70
Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL 505
K Y+ A + V G LE + L++ +K IE+ A G NL
Sbjct: 71 YPNGKFYIYMA--NFVPAYAFSNVVNGVTKGKQTLEKVILSEK--IKNIEDAAFKGCDNL 126
Query: 506 YHLNLKEN 513
+++
Sbjct: 127 KICQIRKK 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 54.5 bits (132), Expect = 6e-09
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 380 SLSAEDLGCAGAGLT----NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 435
S S + C+G L I + L L DN++ + +LT+L L+
Sbjct: 8 SCSGTTVDCSGKSLASVPTGIPTTT-------QVLYLYDNQITKLEPGVFDRLTQLTRLD 60
Query: 436 IGQNGFSMLEAGCFKGLSYLKRLEITGASN-LTRVRKGAFADNL-NLETLTLNKNP 489
+ N ++L AG F L+ L +L + N L + +GAF DNL +L + L NP
Sbjct: 61 LDNNQLTVLPAGVFDKLTQLTQLSLN--DNQLKSIPRGAF-DNLKSLTHIWLLNNP 113
Score = 52.6 bits (127), Expect = 3e-08
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN-L 272
+ L L DN++ + +LT+L L++ N ++L AG F L+ L +L + N L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN--DNQL 90
Query: 273 TRVRKGAFADNL-NLETLTLNKNP 295
+ +GAF DNL +L + L NP
Sbjct: 91 KSIPRGAF-DNLKSLTHIWLLNNP 113
Score = 52.6 bits (127), Expect = 3e-08
Identities = 28/83 (33%), Positives = 39/83 (46%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
T ++LYL DNQ+ + F L L L + N T L G F+ L +L+ L L
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 199 LTNISDNAFRGLSGLRSLVLTDN 221
L +I AF L L + L +N
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
Score = 46.8 bits (112), Expect = 2e-06
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N+I++++ F+ LT L L LD+NQL +P F L L +L + N ++ GAF+
Sbjct: 40 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99
Query: 185 GLGRLSALDLRG 196
L L+ + L
Sbjct: 100 NLKSLTHIWLLN 111
Score = 45.3 bits (108), Expect = 1e-05
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLA---ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
+ L SVPT G+ L + N T L G F+ L +L+ LDL LT
Sbjct: 14 VDCSGKSLASVPT------GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPT---KQLSKLTRL 237
+ F L+ L L L DN+L+SIP L LT +
Sbjct: 68 VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107
Score = 39.5 bits (93), Expect = 0.001
Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 46/147 (31%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHT 78
PS+ S + + +L +P+ + Q L L N+I
Sbjct: 4 PSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITK------------------- 44
Query: 79 TWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGL 138
+ G F+ +L L L++N+ + + P V F+ L
Sbjct: 45 ----LEPGVFDRLTQLTRLDLDNNQ------LTVL--PAGV---------------FDKL 77
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGML 165
T L L L+DNQL+S+P +F L L
Sbjct: 78 TQLTQLSLNDNQLKSIPRGAFDNLKSL 104
Score = 38.8 bits (91), Expect = 0.002
Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 46/154 (29%)
Query: 221 NRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF 280
L S+PT T + L + N + LE G F L+
Sbjct: 19 KSLASVPT---GIPTTTQVLYLYDNQITKLEPGVFDRLT--------------------- 54
Query: 281 ADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN--------AFTSFSESMLAWP 332
L L L+ N +L + G L L L+L +N AF +
Sbjct: 55 ----QLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLK------- 102
Query: 333 ELRTIDIAENPIECGCN-ILWLREMLVRRNTSAV 365
L I + NP +C C+ IL+L + ++ V
Sbjct: 103 SLTHIWLLNNPWDCACSDILYLSRW-ISQHPGLV 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 53.8 bits (130), Expect = 1e-08
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 16/116 (13%)
Query: 380 SLSAEDLGCAGAGLT----NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 435
S + C L I + + L L +N++ + L L++L
Sbjct: 11 SCDQTLVNCQNIRLASVPAGIPTDK-------QRLWLNNNQITKLEPGVFDHLVNLQQLY 63
Query: 436 IGQNGFSMLEAGCFKGLSYLKRLEITGASN-LTRVRKGAFADNL-NLETLTLNKNP 489
N + + G F L+ L +L++ N L + +GAF DNL +L + L NP
Sbjct: 64 FNSNKLTAIPTGVFDKLTQLTQLDLN--DNHLKSIPRGAF-DNLKSLTHIYLYNNP 116
Score = 51.9 bits (125), Expect = 5e-08
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
T + L+L++NQ+ + F +L L +L N T + G F+ L +L+ LDL
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 199 LTNISDNAFRGLSGLRSLVLTDN 221
L +I AF L L + L +N
Sbjct: 93 LKSIPRGAFDNLKSLTHIYLYNN 115
Score = 51.9 bits (125), Expect = 6e-08
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN-L 272
+ L L +N++ + L L++L N + + G F L+ L +L++ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN--DNHL 93
Query: 273 TRVRKGAFADNL-NLETLTLNKNP 295
+ +GAF DNL +L + L NP
Sbjct: 94 KSIPRGAF-DNLKSLTHIYLYNNP 116
Score = 46.1 bits (110), Expect = 5e-06
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
N+I++++ F+ L L+ LY + N+L ++PT F L L +L + N ++ GAF+
Sbjct: 43 NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD 102
Query: 185 GLGRLSALDLRG 196
L L+ + L
Sbjct: 103 NLKSLTHIYLYN 114
Score = 44.6 bits (106), Expect = 2e-05
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 221 NRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN-LTRVRKGA 279
RL S+P T + L + N + LE G F L L++L SN LT + G
Sbjct: 22 IRLASVPA---GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYF--NSNKLTAIPTGV 76
Query: 280 FADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319
F D L L L LN N LK+I GA L +L H+ L N
Sbjct: 77 F-DKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 38.4 bits (90), Expect = 0.002
Identities = 37/147 (25%), Positives = 52/147 (35%), Gaps = 46/147 (31%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHT 78
PS+ S N Q L +P+ QRL L+ N+I
Sbjct: 7 PSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITK------------------- 47
Query: 79 TWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGL 138
+ G F+ L +L N NK + +I P V F+ L
Sbjct: 48 ----LEPGVFDHLVNLQQLYFNSNK------LTAI--PTGV---------------FDKL 80
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGML 165
T L L L+DN L+S+P +F L L
Sbjct: 81 TQLTQLDLNDNHLKSIPRGAFDNLKSL 107
Score = 28.4 bits (64), Expect = 4.3
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTS 323
+ + L LN N ++ +E G L NL L N T+
Sbjct: 34 DKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTA 71
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 53.5 bits (129), Expect = 2e-08
Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 9/129 (6%)
Query: 218 LTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRK 277
LT ++ Q + R EL++ ++E L ++ + + + ++
Sbjct: 4 LTAELIEQAA--QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSD-NEIRKLDG 59
Query: 278 GAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE--SMLAWPELR 335
F L+TL +N N ++ I EG LP+L L L N+ + + + L
Sbjct: 60 --FPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116
Query: 336 TIDIAENPI 344
+ I NP+
Sbjct: 117 YLCILRNPV 125
Score = 51.6 bits (124), Expect = 8e-08
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 9/129 (6%)
Query: 412 LTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRK 471
LT ++ Q + R EL++ ++E L ++ + + + ++
Sbjct: 4 LTAELIEQAA--QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSD-NEIRKLDG 59
Query: 472 GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWPELR 529
F L+TL +N N ++ I E LP+L L L N+ + + + L
Sbjct: 60 --FPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116
Query: 530 TIDIAENPI 538
+ I NP+
Sbjct: 117 YLCILRNPV 125
Score = 47.7 bits (114), Expect = 2e-06
Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 6/128 (4%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
I + Q + R L L ++ + L + N L F
Sbjct: 7 ELIEQAAQ--YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG--FP 61
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIG 243
L RL L + + I + + L L L+LT+N L + L+ L L L I
Sbjct: 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121
Query: 244 QNGFSMLE 251
+N + +
Sbjct: 122 RNPVTNKK 129
Score = 47.0 bits (112), Expect = 3e-06
Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 28/142 (19%)
Query: 30 NLQEANLDVIPSHSNPSIQR-LVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
L ++ ++N R L L +I +++ +D S I + GF
Sbjct: 3 KLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN--EIRKLDGF 60
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
+L L +N+ NRI RI + + L L L L +
Sbjct: 61 PLLRRLKTLLVNN-----------------------NRICRIGEGLDQALPDLTELILTN 97
Query: 149 NQLRSVPTPSFIYLGMLAELRV 170
N L + L L L
Sbjct: 98 NSLVELGD--LDPLASLKSLTY 117
Score = 35.4 bits (82), Expect = 0.022
Identities = 23/142 (16%), Positives = 40/142 (28%), Gaps = 28/142 (19%)
Query: 305 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA 364
L+L+ + ID ++N I LR +
Sbjct: 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRL-------- 66
Query: 365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-K 423
+ L + I + + L L L+LT+N L +
Sbjct: 67 -------------------KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD 107
Query: 424 QLSKLTRLEELEIGQNGFSMLE 445
L+ L L L I +N + +
Sbjct: 108 PLASLKSLTYLCILRNPVTNKK 129
Score = 33.9 bits (78), Expect = 0.068
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 30/101 (29%)
Query: 395 NISDNAFRGLSG------LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 448
+ SDN R L G L++L++ +NR+ I L L EL + N
Sbjct: 48 DFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-----E 102
Query: 449 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 489
L L L+ +L L + +NP
Sbjct: 103 LGDLDPLASLK-------------------SLTYLCILRNP 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 52.0 bits (125), Expect = 6e-08
Identities = 35/153 (22%), Positives = 54/153 (35%), Gaps = 9/153 (5%)
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
L + + D L + L L+ N ++ I LS + L L +G+N +E
Sbjct: 30 LHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE 86
Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEE-GALVGLPN 310
L+ L I + N G +NL L ++ N K+ E L L
Sbjct: 87 -NLDAVADTLEELWI--SYNQIASLSG-IEKLVNLRVLYMSNN-KITNWGEIDKLAALDK 141
Query: 311 LYHLNLKENAFTSFSESMLAWPELRTIDIAENP 343
L L L N + + A E R + P
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174
Score = 50.8 bits (122), Expect = 2e-07
Identities = 36/162 (22%), Positives = 56/162 (34%), Gaps = 9/162 (5%)
Query: 377 SLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 436
+L + + D L + L L+ N ++ I LS + L L +
Sbjct: 21 VATEAEKVELHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSL 77
Query: 437 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE 496
G+N +E L+ L I + N G +NL L ++ N K+ E
Sbjct: 78 GRNLIKKIE-NLDAVADTLEELWI--SYNQIASLSG-IEKLVNLRVLYMSNN-KITNWGE 132
Query: 497 -DALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP 537
D L L L L L N + + A E R + P
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174
Score = 41.6 bits (98), Expect = 2e-04
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 6/111 (5%)
Query: 123 GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA 182
N I +I G+ LRIL L N ++ + L EL + N +L+
Sbjct: 56 STNNIEKISS--LSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLSG-- 110
Query: 183 FNGLGRLSALDLRGAGLTNISD-NAFRGLSGLRSLVLTDNRLQSIPTKQLS 232
L L L + +TN + + L L L+L N L + + +
Sbjct: 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161
Score = 38.5 bits (90), Expect = 0.002
Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 22/130 (16%)
Query: 49 RLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK----- 103
L I+ +D+ + + +H+ LS I I E L L L N
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTN--NIEKISSLSGMENLRILSLGRNLIKKIE 86
Query: 104 ---HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFI 160
+ IS N+I+ + E L LR+LY+ +N++ +
Sbjct: 87 NLDAVADTLEELWIS--------YNQIASLS--GIEKLVNLRVLYMSNNKITNW--GEID 134
Query: 161 YLGMLAELRV 170
L L +L
Sbjct: 135 KLAALDKLED 144
Score = 33.9 bits (78), Expect = 0.073
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 26/108 (24%)
Query: 45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKH 104
+++ L L N IK +++ + +L+ + +S+ I + G E L L +++NK
Sbjct: 70 ENLRILSLGRNLIKKIENLDAVADTLEELWISYN--QIASLSGIEKLVNLRVLYMSNNK- 126
Query: 105 FPQQIVCSIISPRRVEIFGQNRISRIDQ-ACFEGLTALRILYLDDNQL 151
I+ + L L L L N L
Sbjct: 127 ----------------------ITNWGEIDKLAALDKLEDLLLAGNPL 152
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 54.0 bits (129), Expect = 1e-07
Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 20/258 (7%)
Query: 88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
+ + E L ++ + + + + Q+ E L+ L +
Sbjct: 322 WTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPE 380
Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAF 207
+ L L + L F+TL L L + ++ +
Sbjct: 381 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440
Query: 208 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 267
+ R L L L + L +L + L++ N L L+ L+ LE+
Sbjct: 441 ADV---RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALP----PALAALRCLEVL 491
Query: 268 GASN--LTRVRKGAFADNLNLETLTLNKNPKLKTIEE-GALVGLPNLYHLNLKENAFTSF 324
AS+ L V A+ L+ L L N +L+ LV P L LNL+ N+
Sbjct: 492 QASDNALENVDG--VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
Query: 325 SES----MLAWPELRTID 338
P + +I
Sbjct: 549 EGIQERLAEMLPSVSSIL 566
Score = 51.3 bits (122), Expect = 7e-07
Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 33/133 (24%)
Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 467
R L L L + L +L + L++ N L L+ L+
Sbjct: 444 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALP----PALAALR----------- 486
Query: 468 RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAW 525
LE L + N L+ ++ + LP L L L N + +++
Sbjct: 487 -----------CLEVLQASDN-ALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSC 532
Query: 526 PELRTIDIAENPI 538
P L +++ N +
Sbjct: 533 PRLVLLNLQGNSL 545
Score = 43.2 bits (101), Expect = 2e-04
Identities = 34/210 (16%), Positives = 55/210 (26%), Gaps = 64/210 (30%)
Query: 35 NLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKL 94
+D + + ++ L N + ++ A L L H DL+ + E +
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-------LCHLEQLLLV 465
Query: 95 VELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSV 154
L L+HN R+ + L L +L DN L +V
Sbjct: 466 THLDLSHN-----------------------RLRALPP-ALAALRCLEVLQASDNALENV 501
Query: 155 PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD-NAFRGLSGL 213
L RL L L L + L
Sbjct: 502 D--------------------------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535
Query: 214 RSLVLTDNRLQSIP------TKQLSKLTRL 237
L L N L + L ++ +
Sbjct: 536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
Score = 41.7 bits (97), Expect = 5e-04
Identities = 34/228 (14%), Positives = 65/228 (28%), Gaps = 15/228 (6%)
Query: 312 YHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA 371
+ N + L L +E ++ ++ +C A
Sbjct: 287 WRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSA 346
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
+ LS E + L + + L+ L + + L L
Sbjct: 347 TDEQLFRCELSVEKSTVLQSELESCKE--------LQELEPENKWCLLTIILLMRALDPL 398
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL 491
+ FS L+A +YL L S + ++ L L
Sbjct: 399 LYEKETLQYFSTLKAVDPMRAAYLDDLR----SKFLLENSVLKMEYADVRVLHLAHK--- 451
Query: 492 KIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 539
+ L L + HL+L N + ++ A L + ++N +E
Sbjct: 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499
Score = 41.7 bits (97), Expect = 5e-04
Identities = 35/238 (14%), Positives = 65/238 (27%), Gaps = 41/238 (17%)
Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
+ + L+ L + + L L + FS L+A +Y
Sbjct: 362 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421
Query: 261 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENA 320
L L S + ++ L L L + L L + HL+L N
Sbjct: 422 LDDLR----SKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNR 474
Query: 321 FTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLIS 380
+ ++ A L + ++N +E + +L
Sbjct: 475 LRALPPALAALRCLEVLQASDNALENVDGV-------------------------ANLPR 509
Query: 381 LSAEDLGCAGAGLTNISD-NAFRGLSGLRSLVLTDNRLQSIP------TKQLSKLTRL 431
L ++L L + L L L N L + L ++ +
Sbjct: 510 L--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
Score = 37.8 bits (87), Expect = 0.009
Identities = 32/222 (14%), Positives = 61/222 (27%), Gaps = 40/222 (18%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
L L + + + L EL L L
Sbjct: 348 DEQLFRCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK--LTRLEELEIGQNGFSMLEAGCF 255
+ + + + +R+ L D R + + + K + L + ++L
Sbjct: 407 YFSTL-----KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC---- 457
Query: 256 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLN 315
L L + L L+ N +L+ + L L L L
Sbjct: 458 -HLEQLL----------------------LVTHLDLSHN-RLRALPPA-LAALRCLEVLQ 492
Query: 316 LKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREM 356
+NA + + L P L+ + + N ++ I L
Sbjct: 493 ASDNALENVDGVANL--PRLQELLLCNNRLQQSAAIQPLVSC 532
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 49.3 bits (118), Expect = 3e-07
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 402 RGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 460
R S ++ LVL ++R + L + LE L G + + L L +L+
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-----NLPKLNKLKK 68
Query: 461 TGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTS 517
S+ ++ + NL L L+ N K+K + + L L NL L+L T+
Sbjct: 69 LELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTN 127
Query: 518 FS---ESMLAW-PELRTID 532
+ E++ P+L +D
Sbjct: 128 LNDYRENVFKLLPQLTYLD 146
Score = 38.9 bits (91), Expect = 0.001
Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Query: 138 LTALRILYLDDNQLRSVPTPSFI-YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 196
+ ++ L LD+++ L L T++A+ L +L L+L
Sbjct: 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSD 73
Query: 197 AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQN 245
++ + L L L+ N+++ + T + L KL L+ L++
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 37.7 bits (88), Expect = 0.002
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 26/110 (23%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L L GLT+I++ L+ L+ L L+DNR+ K L L + N
Sbjct: 41 FEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 295
L + LK+LE NL++L L
Sbjct: 99 KIKDLS-----TIEPLKKLE-------------------NLKSLDLFNCE 124
Score = 35.0 bits (81), Expect = 0.024
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 26/106 (24%)
Query: 384 EDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 443
E L GLT+I++ L+ L+ L L+DNR+ K L L + N
Sbjct: 45 EFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD 102
Query: 444 LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 489
L + LK+LE NL++L L
Sbjct: 103 LS-----TIEPLKKLE-------------------NLKSLDLFNCE 124
Score = 34.3 bits (79), Expect = 0.033
Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 29/127 (22%)
Query: 46 SIQRLVLSTNRIK--TVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK 103
++ LVL +R ++ + L+ + + + I KL +L+L+ N
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV--GLTSIANLPKLNKLKKLELSDN- 74
Query: 104 HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG 163
R+S + E L L L N+++ + T L
Sbjct: 75 ----------------------RVSGGLEVLAEKCPNLTHLNLSGNKIKDLST--IEPLK 110
Query: 164 MLAELRV 170
L L+
Sbjct: 111 KLENLKS 117
Score = 33.5 bits (77), Expect = 0.064
Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 29/139 (20%)
Query: 92 EKLVELQLNHNKHFPQQIVCSIISPRRVEI--FGQNRISRIDQACFEGLTALRILYLDDN 149
+ EL L++++ ++ +E ++ I L L+ L L DN
Sbjct: 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDN 74
Query: 150 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD-NAFR 208
++ + + L+ L+L G + ++S +
Sbjct: 75 RV------------------------SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK 110
Query: 209 GLSGLRSLVLTDNRLQSIP 227
L L+SL L + + ++
Sbjct: 111 KLENLKSLDLFNCEVTNLN 129
Score = 31.2 bits (71), Expect = 0.43
Identities = 20/158 (12%), Positives = 48/158 (30%), Gaps = 55/158 (34%)
Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS--ESMLAWPELRTIDIAEN 342
+++ L L+ + + EG L L+ TS + + +L+ +++++N
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKL---NKLKKLELSDN 74
Query: 343 PIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFR 402
+ + +
Sbjct: 75 RV-------------------------------------------------SGGLEVLAE 85
Query: 403 GLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQN 439
L L L+ N+++ + T + L KL L+ L++
Sbjct: 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 30.8 bits (70), Expect = 0.53
Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 479 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS--ESMLAWPELRTIDIAEN 536
+++ L L+ + + E L L+ TS + + +L+ +++++N
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKL---NKLKKLELSDN 74
Query: 537 PIECGCNIL 545
+ G +L
Sbjct: 75 RVSGGLEVL 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 51.5 bits (123), Expect = 6e-07
Identities = 61/385 (15%), Positives = 115/385 (29%), Gaps = 46/385 (11%)
Query: 165 LAELRVGLNVFTTLADGAFNGLGR----LSALDLRGAGLTNISDNA----FRGLSGLRSL 216
+ L + + F+ + L + L L+ IS R L S+
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225
Query: 217 VLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVR 276
+ D + + LEE G + + L + ++L G S +
Sbjct: 226 KVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284
Query: 277 KGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA--WPE 333
+ L L + PNL L N +LA +
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET-RNVIGDRGLEVLAQYCKQ 343
Query: 334 LRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGL 393
L+ + I E G + +R A+ L + +
Sbjct: 344 LKRLRIERGADEQGMEDEEGL--VSQRGLIALAQGCQ------ELEYM---AVYV----- 387
Query: 394 TNISDNAFRGLS-GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
++I++ + + L++L + + + ++T L NG L GC K
Sbjct: 388 SDITNESLESIGTYLKNLC----DFRLVLLDREERITDL----PLDNGVRSLLIGCKK-- 437
Query: 453 SYLKRLEITGAS-NLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 510
L+R LT + N+ + L + + G PNL L +
Sbjct: 438 --LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495
Query: 511 KENAFTSFSESMLA--WPELRTIDI 533
+ F+ + + P LR + +
Sbjct: 496 RGCCFSERAIAAAVTKLPSLRYLWV 520
Score = 32.6 bits (74), Expect = 0.43
Identities = 31/205 (15%), Positives = 61/205 (29%), Gaps = 20/205 (9%)
Query: 373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSL-----VLTDNRLQSIPTKQLSK 427
LK K ++ G +T L L+S+ +++D L + +
Sbjct: 80 LKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADD 139
Query: 428 LTRLEEL----EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKG--AFADNL-NL 480
L L+ L +G + C +K L + +S + K A + +L
Sbjct: 140 LETLK-LDKCSGFTTDGLLSIVTHC----RKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194
Query: 481 ETLTLNKNPKLKIIEED--ALV-GLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP 537
E L KI +D + +L + + + A L
Sbjct: 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN 254
Query: 538 IECGCNILWLREMLVRRNTSAVFCN 562
+ G ++ + R+
Sbjct: 255 EDIGMPEKYMNLVFPRKLCRLGLSY 279
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 49.3 bits (118), Expect = 2e-06
Identities = 68/368 (18%), Positives = 111/368 (30%), Gaps = 81/368 (22%)
Query: 43 SNPSIQRLVLSTNRI-----KTVDSAIPIYLSLQHVDLSHTTWLIIPIG---------GF 88
+ SI+ L + I K+V + + S++ + LS T IG
Sbjct: 2 ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNT-----IGTEAARWLSENI 56
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
++ L + + + + + L + L D
Sbjct: 57 ASKKDLEIAEFSDI---------FTGRVKDEIPEALRLLLQ----ALLKCPKLHTVRLSD 103
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLA--DGAFNGLGRLSALDLRGAGLTNISDNA 206
N L L+ T L NGLG + + A +
Sbjct: 104 NAFGPT--------AQEP-LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154
Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKL----TRLEELEIGQN-----GFSMLEAGCFKG 257
+ LRS++ NRL++ K+ +K L +++ QN G L
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214
Query: 258 LSYLKRLEI-------TGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGA------ 304
LK L++ G+S L A NL L LN L GA
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRELGLNDC-LLSA--RGAAAVVDA 267
Query: 305 LVGLPN--LYHLNLKENAFTSFSESMLA------WPELRTIDIAENPI-ECGCNILWLRE 355
L N L L L+ N + L P+L +++ N E + +RE
Sbjct: 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327
Query: 356 MLVRRNTS 363
+ R
Sbjct: 328 VFSTRGRG 335
Score = 48.6 bits (116), Expect = 3e-06
Identities = 61/334 (18%), Positives = 109/334 (32%), Gaps = 80/334 (23%)
Query: 279 AFADNLNLETLTLNKNPKLKTI-EEGA------LVGLPNLYHLNLKEN-----------A 320
++ +++ + L+ N TI E A + +L + A
Sbjct: 27 VLLEDDSVKEIVLSGN----TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 82
Query: 321 FTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLIS 380
+++L P+L T+ +++N L + L ++T L++ +
Sbjct: 83 LRLLLQALLKCPKLHTVRLSDNAFGPTA-QEPLIDFL-SKHTP---------LEH---LY 128
Query: 381 LSAEDLGCAGAG------LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL----TR 430
L LG + + LRS++ NRL++ K+ +K
Sbjct: 129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188
Query: 431 LEELEIGQN-----GFSMLEAGCFKGLSYLKRLEI-------TGASNLTRVRKGAFADNL 478
L +++ QN G L LK L++ G+S L A
Sbjct: 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI----ALKSWP 244
Query: 479 NLETLTLNKNPKLKIIEE------DALVGLPN--LYHLNLKENAFTSFSESMLA------ 524
NL L LN + DA L N L L L+ N + L
Sbjct: 245 NLRELGLNDC---LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301
Query: 525 WPELRTIDIAENPI-ECGCNILWLREMLVRRNTS 557
P+L +++ N E + +RE+ R
Sbjct: 302 MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 335
Score = 42.4 bits (100), Expect = 3e-04
Identities = 46/297 (15%), Positives = 85/297 (28%), Gaps = 71/297 (23%)
Query: 42 HSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNH 101
P + + LS N + P+ L HT L L L++
Sbjct: 91 LKCPKLHTVRLSDNAF-GPTAQEPLIDFLS----KHTP--------------LEHLYLHN 131
Query: 102 NKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY 161
N + P+ + + LR + N+L +
Sbjct: 132 NG----------LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG------- 174
Query: 162 LGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN 221
M L + ++ +R G+ ++ L+ L L DN
Sbjct: 175 -SMKE-WAKTFQSHRLLHT-----V-KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226
Query: 222 RLQSIPTKQLSK----LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRK 277
+ + L+ L EL + L GA+ +
Sbjct: 227 TFTHLGSSALAIALKSWPNLRELGLNDC-----------------LLSARGAAAVVDAFS 269
Query: 278 GAFADNLNLETLTLNKNP----KLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA 330
+N+ L+TL L N ++T++ +P+L L L N F+ + +
Sbjct: 270 K--LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDE 324
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 46.7 bits (111), Expect = 3e-06
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 14/139 (10%)
Query: 402 RGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 460
R + +R LVL + + + L ++ LE L + G + L L +L+
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-----NLPKLPKLKK 75
Query: 461 TGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTS 517
S + NL L L+ N KLK I + L L L L+L T+
Sbjct: 76 LELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTN 134
Query: 518 FS---ESMLAW-PELRTID 532
+ ES+ P+L +D
Sbjct: 135 LNDYRESVFKLLPQLTYLD 153
Score = 46.7 bits (111), Expect = 3e-06
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 14/139 (10%)
Query: 208 RGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
R + +R LVL + + + L ++ LE L + G + L L +L+
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-----NLPKLPKLKK 75
Query: 267 TGASN--LTRVRKGAFADNLNLETLTLNKNPKLKTIEE-GALVGLPNLYHLNLKENAFTS 323
S + NL L L+ N KLK I L L L L+L T+
Sbjct: 76 LELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTN 134
Query: 324 FS---ESMLAW-PELRTID 338
+ ES+ P+L +D
Sbjct: 135 LNDYRESVFKLLPQLTYLD 153
Score = 40.5 bits (95), Expect = 3e-04
Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 28/123 (22%)
Query: 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
++ +I+ L L L + L SV
Sbjct: 35 KSNDGKIEGLT-AEFVNLEFLSLINVGLISVSN--------------------------L 67
Query: 184 NGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEI 242
L +L L+L + D L L L L+ N+L+ I T + L KL L+ L++
Sbjct: 68 PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127
Query: 243 GQN 245
Sbjct: 128 FNC 130
Score = 35.9 bits (83), Expect = 0.013
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 27/121 (22%)
Query: 50 LVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQI 109
L + ++ +++L+ + L + +I + KL +L+L+ N
Sbjct: 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINV--GLISVSNLPKLPKLKKLELSEN------- 81
Query: 110 VCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR 169
RI E L L L L N+L+ + T L L L+
Sbjct: 82 ----------------RIFGGLDMLAEKLPNLTHLNLSGNKLKDIST--LEPLKKLECLK 123
Query: 170 V 170
Sbjct: 124 S 124
Score = 34.7 bits (80), Expect = 0.033
Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 35/155 (22%)
Query: 92 EKLVELQLNHNKHFPQQIVCSIISPRRVEI--FGQNRISRIDQACFEGLTALRILYLDDN 149
+ EL L++ K +I +E + + L L+ L L +N
Sbjct: 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS--NLPKLPKLKKLELSEN 81
Query: 150 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD-NAFR 208
++ D L L+ L+L G L +IS +
Sbjct: 82 RI------------------------FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK 117
Query: 209 GLSGLRSLVLTDNRLQSIPT------KQLSKLTRL 237
L L+SL L + + ++ K L +LT L
Sbjct: 118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152
Score = 31.6 bits (72), Expect = 0.40
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQN 439
+ D L L L L+ N+L+ I T + L KL L+ L++
Sbjct: 83 IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 46.9 bits (112), Expect = 1e-05
Identities = 89/473 (18%), Positives = 135/473 (28%), Gaps = 113/473 (23%)
Query: 136 EGLTALRILYLDDNQLRSVPTPSF----IYLGMLAELRVGLNVFT-----TLADGAFNGL 186
L +++ LDD L LAEL + N + G
Sbjct: 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 84
Query: 187 GRLSALDLRGAGLTNISD----NAFRGLSGLRSLVLTDNRLQSIPTKQLSKL-----TRL 237
++ L L+ LT + R L L+ L L+DN L + L + RL
Sbjct: 85 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 144
Query: 238 EELEIGQNGFSMLEAGC------FKGLSYLKRLEI-------TGASNLTRVRKGAFADNL 284
E+L++ S A C + K L + G L + K +
Sbjct: 145 EKLQLEYCSLS--AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS---PC 199
Query: 285 NLETLTLNKNPKLKTIEEG------ALVGLPNLYHLNLKENAFTSFSESMLAW------P 332
LE L L + + +L L L N + L
Sbjct: 200 QLEALKLESC---GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256
Query: 333 ELRTIDIAENPI-ECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSL--ISLSAEDLGCA 389
LRT+ I E I GC L + +SL +SL+ +LG
Sbjct: 257 RLRTLWIWECGITAKGCGDL----------CRVLRAK-------ESLKELSLAGNELGDE 299
Query: 390 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL----TRLEELEIGQNGFSMLE 445
GA L + + L SL + + S + L EL+I N
Sbjct: 300 GARL--LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN------ 351
Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE------DAL 499
RLE G L + L L L + + L
Sbjct: 352 -----------RLEDAGVRELCQGLGQP---GSVLRVLWLADC---DVSDSSCSSLAATL 394
Query: 500 VGLPNLYHLNLKENAFTSFSESMLA------WPELRTIDIAENPI-ECGCNIL 545
+ +L L+L N L L + + + E + L
Sbjct: 395 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 447
Score = 45.0 bits (107), Expect = 6e-05
Identities = 88/531 (16%), Positives = 157/531 (29%), Gaps = 153/531 (28%)
Query: 28 SCNLQEANLDVIPS--HSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPI 85
C L EA I S NP++ L L +N + + LQ
Sbjct: 37 DCGLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQGLQT------------- 82
Query: 86 GGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILY 145
P K+ +L L + ++ + L L+ L+
Sbjct: 83 ----PSCKIQKLSLQNCC----------LTGAGCGVLSS---------TLRTLPTLQELH 119
Query: 146 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD- 204
L DN L G L +G + RL L L L+ S
Sbjct: 120 LSDNLL-------------------GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160
Query: 205 ---NAFRGLSGLRSLVLTDNRLQSIPTKQLSKL-----TRLEELEIGQNGFSMLEAGCFK 256
+ R + L +++N + + L + +LE L++ G + C +
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT--SDNC-R 217
Query: 257 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP----KLKTIEEGALVGLPNLY 312
L G A +L L L N + + G L L
Sbjct: 218 DLC------------------GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259
Query: 313 HLNLKENAFTS-----FSESMLAWPELRTIDIAENPIEC-GCNILWLREMLVRRNTSAVF 366
L + E T+ + A L+ + +A N + G +L E L+
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC--ETLLEPGCQ--- 314
Query: 367 CNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 426
L+ + + + A ++ S + L L +++NRL+ ++L
Sbjct: 315 ------LES---LWVKSCSFTAACC--SHFS-SVLAQNRFLLELQISNNRLEDAGVRELC 362
Query: 427 KL-----TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE 481
+ + L L + S ++ C L+ N +L
Sbjct: 363 QGLGQPGSVLRVLWLADCDVS--DSSC-SSLAA------------------TLLANHSLR 401
Query: 482 TLTLNKNPKLKIIEEDALVGL--------PNLYHLNLKENAFTSFSESMLA 524
L L+ N + + ++ L L L L + ++ E L
Sbjct: 402 ELDLSNNC----LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 448
Score = 40.7 bits (96), Expect = 0.001
Identities = 66/383 (17%), Positives = 118/383 (30%), Gaps = 89/383 (23%)
Query: 213 LRSLVLTDNRLQSIPTKQLSK-LTRLEELEIGQNGFSMLEAGC------FKGLSYLKRLE 265
++SL + L +L L + + + + G + EA C + L L
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT--EARCKDISSALRVNPALAELN 62
Query: 266 IT-------GASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGA------LVGLPNLY 312
+ G + + + + ++ L+L G L LP L
Sbjct: 63 LRSNELGDVGVHCVLQGLQTP---SCKIQKLSLQNC---CLTGAGCGVLSSTLRTLPTLQ 116
Query: 313 HLNLKENAFTSFSESMLA------WPELRTIDIAENPI-ECGCNILWLREMLVRRNTSAV 365
L+L +N +L L + + + C L ++R
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS---VLRAKPD-- 171
Query: 366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQL 425
K +++S D+ AG + L +L L + S + L
Sbjct: 172 -------FKE---LTVSNNDINEAGV--RVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219
Query: 426 S----KLTRLEEL-----EIGQNGFSMLEAGCFKGLSYLKRLEI-------TGASNLTRV 469
L EL ++G G + L G S L+ L I G +L R
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR- 278
Query: 470 RKGAFADNLNLETLTLNKNPKLKIIEEDALVGL--------PNLYHLNLKENAFTSFSES 521
+L+ L+L N + ++ L L L +K +FT+ S
Sbjct: 279 ---VLRAKESLKELSLAGNE----LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331
Query: 522 MLAW-----PELRTIDIAENPIE 539
+ L + I+ N +E
Sbjct: 332 HFSSVLAQNRFLLELQISNNRLE 354
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 45.2 bits (108), Expect = 3e-05
Identities = 58/292 (19%), Positives = 95/292 (32%), Gaps = 92/292 (31%)
Query: 185 GLGRLSALDLRGAGLT---NISDNAFRGLSGLRSLVLTD-NRLQ-SIPTKQLSKLTRLEE 239
R++ LDL G L I + L L L + N L IP ++KLT+L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHY 105
Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGA-----SNLTRVRKGAFADNLNLETLTLNKN 294
L I S GA S + L TL + N
Sbjct: 106 LYITHTNVS-------------------GAIPDFLSQIK-----------TLVTLDFSYN 135
Query: 295 PKLKTIEEG----ALVGLPNLYHLNLKENAFT-SFSESMLAWPELRT-IDIAEN------ 342
L G ++ LPNL + N + + +S ++ +L T + I+ N
Sbjct: 136 -AL----SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Query: 343 PIECG-CNILWLREMLVRRNTSAVFCNS---PAPLKYKSLISLSAEDLGCAGAGLTNISD 398
P N+ ++ + N A + + S + L +
Sbjct: 191 PPTFANLNLAFVD----------LSRNMLEGDASVLFGSDKNTQKIHL----------AK 230
Query: 399 NAFRG-------LSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFS 442
N+ L L L +NR+ ++P + L++L L L + N
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLC 281
Score = 35.6 bits (83), Expect = 0.038
Identities = 30/193 (15%), Positives = 59/193 (30%), Gaps = 46/193 (23%)
Query: 93 KLVELQLNHNK-----HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
++ L L+ P + ++ + I G N + LT L LY+
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 148 DNQLRSVPTPSFI-YLGMLAELRVGLNVFT-----TLADGAFNGLGRLSALDLRGAGLT- 200
+ S P F+ + L L N + +++ L L + G ++
Sbjct: 110 HTNV-SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-----LPNLVGITFDGNRISG 163
Query: 201 ----------------NISDNAFRG--------LSGLRSLVLTDNRLQ-SIPTKQLSKLT 235
IS N G L+ L + L+ N L+
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDK 221
Query: 236 RLEELEIGQNGFS 248
+++ + +N +
Sbjct: 222 NTQKIHLAKNSLA 234
Score = 33.3 bits (77), Expect = 0.21
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTD-NRLQ-SIPT 422
V C++ + + LS +L I + L L L + N L IP
Sbjct: 41 VLCDTDTQTYRVNNLDLSGLNL----PKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPP 95
Query: 423 KQLSKLTRLEELEIGQNGFS 442
++KLT+L L I S
Sbjct: 96 -AIAKLTQLHYLYITHTNVS 114
Score = 32.9 bits (76), Expect = 0.23
Identities = 32/164 (19%), Positives = 51/164 (31%), Gaps = 38/164 (23%)
Query: 395 NISDNAFRG--------LSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFSMLE 445
I+ G + L +L + N L ++P +S L L + N S
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRIS--- 162
Query: 446 AG----CFKGLSYLKRLEITGASNLTRVRKGAFAD---NLNLETLTLNKNPKL--KIIEE 496
G + S L + LT G NLNL + L++N L
Sbjct: 163 -GAIPDSYGSFSKLFTSMTISRNRLT----GKIPPTFANLNLAFVDLSRN-MLEGDASVL 216
Query: 497 DALVGLPNLYHLNLKENAFT----SFSESMLAWPELRTIDIAEN 536
N ++L +N+ S L +D+ N
Sbjct: 217 --FGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNN 254
Score = 30.6 bits (70), Expect = 1.4
Identities = 50/316 (15%), Positives = 82/316 (25%), Gaps = 110/316 (34%)
Query: 231 LSKLTRLEELEIGQNGFSMLEA--GCFKGLSYLKRLEITGASNLTRVRKGAFADNL---- 284
++ R+ L++ L YL L I G +NL G +
Sbjct: 46 DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLT 101
Query: 285 NLETLTLNKNPKLKTIEEGALVG--------LPNLYHLNLKENAFT-SFSESMLAWPELR 335
L L + + G + L L+ NA + + S+ + P L
Sbjct: 102 QLHYLYITHT---------NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 336 TIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTN 395
I N I + P Y S L +
Sbjct: 153 GITFDGNRI-----------------------SGAIPDSYGSFSKLF-TSM--------T 180
Query: 396 ISDNAFRG--------LSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFSMLEA 446
IS N G L+ L + L+ N L+ +++ + +N +
Sbjct: 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLA---- 234
Query: 447 GCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN------PKLKIIEEDALV 500
++ NL L L N P+ L
Sbjct: 235 ----F-------DLGKVGLSK-----------NLNGLDLRNNRIYGTLPQ-------GLT 265
Query: 501 GLPNLYHLNLKENAFT 516
L L+ LN+ N
Sbjct: 266 QLKFLHSLNVSFNNLC 281
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 43.7 bits (103), Expect = 1e-04
Identities = 73/513 (14%), Positives = 139/513 (27%), Gaps = 75/513 (14%)
Query: 7 QELRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPI 66
+++ P+ R P ++ L P ++ ++ +++
Sbjct: 46 RKVFIGNCYAVSPATVIRRFP--KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSS 103
Query: 67 YLSLQHVDLSHTTW----LIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF 122
Y L+ + L L + F + L L+ C S +
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSF---KNFKVLVLSS---------CEGFSTDGLAAI 151
Query: 123 GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV---FTTLA 179
L+ L L ++ + V + V LN+ + ++
Sbjct: 152 AAT------------CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199
Query: 180 DGAFNGLGR----LSALDLRGAGLTNISDNAFRGLSGLRSLVL------TDNRLQSIPTK 229
A L L +L L A + L L + S +
Sbjct: 200 FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259
Query: 230 QLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETL 289
LS L L + + S L L ++ A+ + L+ L
Sbjct: 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRL 319
Query: 290 TLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN 349
+ + +E A +L L + SE + P + + + GC
Sbjct: 320 WVLDYIEDAGLEVLAS-TCKDLRELRV------FPSEPFVMEPNVALTEQGLVSVSMGCP 372
Query: 350 ILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAF----RG 403
L +L T+A + L + D F
Sbjct: 373 --KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430
Query: 404 LSGLRSLVL----TDNRLQSIPTKQLSKLTRLEEL-----EIGQNGFSMLEAGCFKGLSY 454
LR L L TD + I + ++E L G + +GC
Sbjct: 431 CKDLRRLSLSGLLTDKVFEYI----GTYAKKMEMLSVAFAGDSDLGMHHVLSGC----DS 482
Query: 455 LKRLEITGASNLTRVRKGAFADNLNLETLTLNK 487
L++LEI + + + +L ++
Sbjct: 483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 38.3 bits (89), Expect = 0.002
Identities = 28/141 (19%), Positives = 48/141 (34%), Gaps = 41/141 (29%)
Query: 188 RLSALDLRGAGLTNISDNAFRGLSGLRSLVL------TDNRLQSIPTKQLSKLTR-LEEL 240
++ A+D + + +I + GL + + L D L+ + QL L + + E+
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL--SQLENLQKSMLEM 119
Query: 241 EIGQNGFSMLEAGCFK----GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPK 296
EI C G+ L NL+ L L+ P
Sbjct: 120 EI---------ISCGNVTDKGIIALHHFR-------------------NLKYLFLSDLPG 151
Query: 297 LKTIEEGALVGLPNLYHLNLK 317
+K E+ +L L LK
Sbjct: 152 VKEKEKIVQAFKTSLPSLELK 172
Score = 34.0 bits (78), Expect = 0.066
Identities = 31/174 (17%), Positives = 52/174 (29%), Gaps = 47/174 (27%)
Query: 355 EMLVRRNTSAVFCNSP------APLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLR 408
E L+R + L L + + + + +I + GL +
Sbjct: 29 EWLLRCGAMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVE 88
Query: 409 SLVL------TDNRLQSIPTKQLSKLTR-LEELEIGQNGFSMLEAGCFK----GLSYLKR 457
+ L D L+ + QL L + + E+EI C G+ L
Sbjct: 89 KIRLCKCHYIEDGCLERL--SQLENLQKSMLEMEI---------ISCGNVTDKGIIALHH 137
Query: 458 LEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 511
NL+ L L+ P +K E+ +L L LK
Sbjct: 138 FR-------------------NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
Score = 29.0 bits (65), Expect = 2.9
Identities = 15/102 (14%), Positives = 41/102 (40%), Gaps = 11/102 (10%)
Query: 224 QSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT-----RVRKG 278
+PT L K +++ ++ + + +GL Y++++ + + R+ +
Sbjct: 51 NHLPTGPLDKY-KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL 109
Query: 279 AFADNLNLETLTLNKNPKLKTIEEG--ALVGLPNLYHLNLKE 318
++ + + + ++G AL NL +L L +
Sbjct: 110 ENLQ-KSMLEMEIISCGNV--TDKGIIALHHFRNLKYLFLSD 148
Score = 28.7 bits (64), Expect = 3.8
Identities = 14/100 (14%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 418 QSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT-----RVRKG 472
+PT L K +++ ++ + + +GL Y++++ + + R+ +
Sbjct: 51 NHLPTGPLDKY-KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL 109
Query: 473 AFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 512
++ + + + AL NL +L L +
Sbjct: 110 ENLQ-KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 36.5 bits (84), Expect = 0.014
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 270 SNLTRVRKGAFADNLNLETLTLNKNPKLKTIE--EGALVGLPNLYHLNLKENAFTSFSE- 326
S + + + L +L L+ N +L ++ + PNL LNL N S E
Sbjct: 156 SCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL 214
Query: 327 SMLAWPELRTIDIAENPI 344
+ +L + + N +
Sbjct: 215 DKIKGLKLEELWLDGNSL 232
Score = 35.0 bits (80), Expect = 0.043
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 464 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIE--EDALVGLPNLYHLNLKENAFTSFSE- 520
S + + + L +L L+ N +L ++ + PNL LNL N S E
Sbjct: 156 SCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL 214
Query: 521 SMLAWPELRTIDIAENPI 538
+ +L + + N +
Sbjct: 215 DKIKGLKLEELWLDGNSL 232
Score = 30.7 bits (69), Expect = 1.2
Identities = 28/135 (20%), Positives = 44/135 (32%), Gaps = 37/135 (27%)
Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP--TKQLSKLTRLEELEIGQNG 246
L+ A L I +N + L SL L++NRL + + + K L+ L + N
Sbjct: 152 LNRRSCMAATLRIIEEN----IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207
Query: 247 FSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGA-- 304
+ L +K L LE L L+ N T + +
Sbjct: 208 LK-----SERELDKIK--------------------GLKLEELWLDGNSLCDTFRDQSTY 242
Query: 305 ----LVGLPNLYHLN 315
P L L+
Sbjct: 243 ISAIRERFPKLLRLD 257
Score = 30.4 bits (68), Expect = 1.4
Identities = 30/146 (20%), Positives = 47/146 (32%), Gaps = 29/146 (19%)
Query: 11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSL 70
S +N P + E ++ + S Q L L R A I + L
Sbjct: 93 SIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVL 152
Query: 71 QHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRI 130
T II E +L+ L L++N R+ R+
Sbjct: 153 NRRSCMAATLRIIE----ENIPELLSLNLSNN-----------------------RLYRL 185
Query: 131 DQ--ACFEGLTALRILYLDDNQLRSV 154
D + + L+IL L N+L+S
Sbjct: 186 DDMSSIVQKAPNLKILNLSGNELKSE 211
Score = 30.0 bits (67), Expect = 1.8
Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 37/130 (28%)
Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP--TKQLSKLTRLEELEIGQNGFSMLE 445
C A L I +N + L SL L++NRL + + + K L+ L + N
Sbjct: 157 CMAATLRIIEEN----IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK--- 209
Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDA------L 499
+ L +K L LE L L+ N + +
Sbjct: 210 --SERELDKIK--------------------GLKLEELWLDGNSLCDTFRDQSTYISAIR 247
Query: 500 VGLPNLYHLN 509
P L L+
Sbjct: 248 ERFPKLLRLD 257
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 35.3 bits (80), Expect = 0.050
Identities = 26/157 (16%), Positives = 50/157 (31%), Gaps = 22/157 (14%)
Query: 400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 459
+ L +L + SI K L LE + G S++E L L++L
Sbjct: 167 VLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLE-IISGGLPDSVVEDILGSDLPNLEKLV 225
Query: 460 I-------TGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALV-----GLPNLY 506
+ ++ R D NL+ L + + + LP L
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA---EEQNVVVEMFLESDILPQLE 282
Query: 507 HLNLKENAFT-----SFSESMLAWPELRTIDIAENPI 538
+++ T + + L+ I++ N +
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
Score = 29.9 bits (66), Expect = 2.1
Identities = 23/171 (13%), Positives = 46/171 (26%), Gaps = 24/171 (14%)
Query: 279 AFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA---WPELR 335
L L + L PNL L + + P L
Sbjct: 167 VLDAMPLLNNLKIKGTNNLSI----GKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222
Query: 336 TIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTN 395
+ + + G + VF + ++ +L L D +
Sbjct: 223 KLVLYVGVEDYGFD-----------GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271
Query: 396 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQL----SKLTRLEELEIGQNGFS 442
++ L L ++ ++ L + L K+ L+ + + N S
Sbjct: 272 FLESDI--LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
Score = 29.5 bits (65), Expect = 2.9
Identities = 32/183 (17%), Positives = 57/183 (31%), Gaps = 22/183 (12%)
Query: 353 LREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVL 412
+ S S + + L TN + L+SL +
Sbjct: 141 FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEI 200
Query: 413 -----TDNRLQSIPTKQLSKLTRLE-----ELEIGQNGFSMLEAGCFKG-LSYLKRLEIT 461
D+ ++ I L L +L E ++ K LK L I
Sbjct: 201 ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260
Query: 462 GASNLTRVRKG-AFADNL-NLETLTLNKNPKLKIIEE------DALVGLPNLYHLNLKEN 513
A V + +D L LET+ ++ + +E D + + +L +N+K N
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAG---VLTDEGARLLLDHVDKIKHLKFINMKYN 317
Query: 514 AFT 516
+
Sbjct: 318 YLS 320
Score = 28.8 bits (63), Expect = 6.1
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 184 NGLGRLSALDLRGAGLTNISDNAF---RGLSGLRSLVLTDNRLQSIPTKQL----SKLTR 236
+ L L + A N+ F L L ++ ++ L + L K+
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308
Query: 237 LEELEIGQNGFS 248
L+ + + N S
Sbjct: 309 LKFINMKYNYLS 320
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 34.5 bits (79), Expect = 0.088
Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 25/158 (15%)
Query: 175 FTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLS----GLRSLVLTDNRLQSIPTKQ 230
F R+ +DL + I + G+ L++L L RL
Sbjct: 81 FMDQPLAEHFSPFRVQHMDLSN---SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 137
Query: 231 LSKLTRLEELE------IGQNGFSMLEAGCFKGLSYLKRLEITGASNLT-RVRKGAFADN 283
L+K + L L + L + C S L L ++ + T + + A A
Sbjct: 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSC----SRLDELNLSWCFDFTEKHVQVAVAHV 193
Query: 284 L-NLETLTLNKNPKLKTIEEGALV----GLPNLYHLNL 316
+ L L+ K +++ L PNL HL+L
Sbjct: 194 SETITQLNLSGYR--KNLQKSDLSTLVRRCPNLVHLDL 229
Score = 31.8 bits (72), Expect = 0.61
Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 22/133 (16%)
Query: 394 TNISDNAFRGLS----GLRSLVLTDNRLQSIPTKQLSKLTRLEELE------IGQNGFSM 443
+ I + G+ L++L L RL L+K + L L +
Sbjct: 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 162
Query: 444 LEAGCFKGLSYLKRLEITGASNLT-RVRKGAFADNL-NLETLTLNKNPKLKIIEEDALV- 500
L + C S L L ++ + T + + A A + L L+ K +++ L
Sbjct: 163 LLSSC----SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR--KNLQKSDLST 216
Query: 501 ---GLPNLYHLNL 510
PNL HL+L
Sbjct: 217 LVRRCPNLVHLDL 229
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 32.4 bits (74), Expect = 0.38
Identities = 52/352 (14%), Positives = 102/352 (28%), Gaps = 101/352 (28%)
Query: 211 SGLRSLVLTDNRLQSIPTKQLSKL-----TRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 265
G+ SL L+ N L SI T +L + + L + N + + L +
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG--FKNSDELVQILAAI- 78
Query: 266 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS 325
N+ +L L+ N L +
Sbjct: 79 -----------------PANVTSLNLSGN--------------------FLSYKSSDELV 101
Query: 326 ESMLAWP-ELRTIDIAENPI-ECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSA 383
+++ A P + +D+ N + F N PA + ++L
Sbjct: 102 KTLAAIPFTITVLDLGWNDFSSKSSSEF-----------KQAFSNLPASITS---LNLRG 147
Query: 384 EDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL-----TRLEELEIGQ 438
DLG + + + + SL L N L S +L+K + L++
Sbjct: 148 NDLGIKSS--DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205
Query: 439 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPK----LKII 494
N L + + L + + ++ +L L N L+ +
Sbjct: 206 N-----------------LLGLKSYAELAYIFS---SIPNHVVSLNLCLNCLHGPSLENL 245
Query: 495 EEDALVGLPNLYHLNLKENAFTSFSESMLAW--------PELRTIDIAENPI 538
+ L +L + L + + S+ ++ +D I
Sbjct: 246 KL-LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 29.9 bits (67), Expect = 1.0
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 108 QIVCSIISPRRVEIFGQNRISRIDQACFEGLTA 140
I C+ S + + R+ ACF L
Sbjct: 93 NIFCAECSAKNALTPSSKKPVRVCDACFNDLQG 125
>3dww_A Prostaglandin E synthase; membrane protein, four helix bundle,
isomerase, membrane, transmembrane; HET: GSH; 3.50A
{Homo sapiens}
Length = 158
Score = 27.3 bits (60), Expect = 8.5
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 451 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 510
L +K + + R+RK AFA N E + P+ + D V H N
Sbjct: 27 TLLVIKMYVVAIITGQVRLRKKAFA---NPEDALRHGGPQYCRSDPD--VERCLRAHRND 81
Query: 511 KEN 513
E
Sbjct: 82 MET 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.394
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,517,233
Number of extensions: 521001
Number of successful extensions: 5706
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1284
Number of HSP's successfully gapped: 466
Length of query: 581
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 482
Effective length of database: 3,937,614
Effective search space: 1897929948
Effective search space used: 1897929948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)