RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8551
(581 letters)
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 80.1 bits (196), Expect = 4e-17
Identities = 61/308 (19%), Positives = 120/308 (38%), Gaps = 17/308 (5%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSH 77
P R + L+ +P P L L N+I + D +L + L +
Sbjct: 5 PFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN 64
Query: 78 TTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEG 137
I G F P KL L L+ N+ +++ + + +N I+++ ++ F G
Sbjct: 65 NKISKISPGAFAPLVKLERLYLSKNQL--KELPEKMPKTLQELRVHENEITKVRKSVFNG 122
Query: 138 LTALRILYLDDNQLRSVPTP--SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
L + ++ L N L+S +F + L+ +R+ TT+ G L+ L L
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLD 179
Query: 196 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
G +T + + +GL+ L L L+ N + ++ L+ L EL + N + G
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239
Query: 256 KGLSYLKRLEITGASNLTRVRKGAFAD------NLNLETLTLNKNP-KLKTIEEGALVGL 308
Y++ + + +N++ + F + ++L NP + I+ +
Sbjct: 240 -DHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 297
Query: 309 PNLYHLNL 316
+ L
Sbjct: 298 YVRAAVQL 305
Score = 70.8 bits (172), Expect = 4e-14
Identities = 61/306 (19%), Positives = 102/306 (33%), Gaps = 22/306 (7%)
Query: 141 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
LR++ D L VP A L + N T + DG F L L L L ++
Sbjct: 12 LRVVQCSDLGLEKVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68
Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
IS AF L L L L+ N+L+ +P K L+EL + +N + + F GL+
Sbjct: 69 KISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQ 125
Query: 261 LKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319
+ +E+ + + GAF L + + + TI +G P+L L+L N
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL---PPSLTELHLDGN 181
Query: 320 AFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN-SPAPLKYKSL 378
T + L + L R P
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 241
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRG------LSGLRSLVLTDNRLQ--SIPTKQLSKLTR 430
+ + + ++ I N F + + L N +Q I +
Sbjct: 242 KYI--QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299
Query: 431 LEELEI 436
+++
Sbjct: 300 RAAVQL 305
Score = 63.5 bits (153), Expect = 1e-11
Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 17/278 (6%)
Query: 259 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKE 318
L++ + +T ++ G F + NL TL L N K+ I GA L L L L +
Sbjct: 31 PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSK 88
Query: 319 NAFTSFSESMLAWP-ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKS 377
N E M ELR + + + ++V T+ + + ++
Sbjct: 89 NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148
Query: 378 LISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 437
+ LS + A +T I L L L N++ + L L L +L +
Sbjct: 149 MKKLSYIRI--ADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203
Query: 438 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED 497
N S ++ G +L+ L + + AD+ ++ + L+ N + I +
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPG--GLADHKYIQVVYLHNN-NISAIGSN 260
Query: 498 ALVG------LPNLYHLNLKENAFTSFSESMLAWPELR 529
+ ++L N + + +
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 298
Score = 63.1 bits (152), Expect = 2e-11
Identities = 48/252 (19%), Positives = 87/252 (34%), Gaps = 36/252 (14%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD---- 180
N+I+ I F+ L L L L +N++ + +F L L L + N L +
Sbjct: 41 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 100
Query: 181 -----------------GAFNGLGRLSALDLRGAGL--TNISDNAFRGLSGLRSLVLTDN 221
FNGL ++ ++L L + I + AF+G+ L + + D
Sbjct: 101 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 160
Query: 222 RLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
+ +IP LT EL + N + ++A KGL+ L +L ++ S
Sbjct: 161 NITTIPQGLPPSLT---ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217
Query: 282 DNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPE-------L 334
E N + + L N ++ + P
Sbjct: 218 TPHLRELHLNNNKLVKVPGGLA---DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 274
Query: 335 RTIDIAENPIEC 346
+ + NP++
Sbjct: 275 SGVSLFSNPVQY 286
Score = 53.1 bits (126), Expect = 3e-08
Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 26/174 (14%)
Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG 447
C+ GL + + L L +N++ I L L L + N S + G
Sbjct: 17 CSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 73
Query: 448 CFKGLSYLKRLEITGAS--------------------NLTRVRKGAFADNLNLETLTL-N 486
F L L+RL ++ +T+VRK F + + L
Sbjct: 74 AFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 133
Query: 487 KNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC 540
K IE A G+ L ++ + + T+ + + P L + + N I
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITK 185
Score = 43.1 bits (100), Expect = 5e-05
Identities = 36/208 (17%), Positives = 61/208 (29%), Gaps = 26/208 (12%)
Query: 361 NTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI 420
+ V C+ K + L +T I D F+ L L +L+L +N++ I
Sbjct: 11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70
Query: 421 PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS---------------- 464
+ L +LE L + +N L K L L+ E
Sbjct: 71 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130
Query: 465 ------NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF 518
+ + GAF L + + + I + P+L L+L N T
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP---PSLTELHLDGNKITKV 186
Query: 519 SESMLAWPELRTIDIAENPIECGCNILW 546
+ L +
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGS 214
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 79.1 bits (193), Expect = 7e-17
Identities = 63/255 (24%), Positives = 97/255 (38%), Gaps = 7/255 (2%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGML-AELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
A + ++L N++ VP SF L + A A
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 257
L ++ F GL L +L L LQ + L L+ L + N L F+
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 258 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLK 317
L L L + G + ++ V + AF +L+ L L++N + A L L L L
Sbjct: 152 LGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLF 209
Query: 318 ENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRNTSA--VFCNSPAPLK 374
N ++ LA L+ + + +NP C C L L + S+ V C+ P L
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA 269
Query: 375 YKSLISLSAEDL-GC 388
+ L L+A DL GC
Sbjct: 270 GRDLKRLAANDLQGC 284
Score = 68.7 bits (166), Expect = 2e-13
Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 3/190 (1%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
L ++ F GL L +L L LQ + L L+ L + N L F+ L
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 453 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 512
L L + G + ++ V + AF +L+ L L++N + +
Sbjct: 153 GNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 513 NAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA--VFCNSPAPLKYK 570
N +E++ L+ + + +NP C C L L + S+ V C+ P L +
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271
Query: 571 SLISLSAEDL 580
L L+A DL
Sbjct: 272 DLKRLAANDL 281
Score = 60.6 bits (145), Expect = 9e-11
Identities = 57/241 (23%), Positives = 88/241 (36%), Gaps = 21/241 (8%)
Query: 28 SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
+ + + L +P + QR+ L NRI V +A L I
Sbjct: 15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAA----------SFRACRNLTILWLH 64
Query: 88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
N + ++++ ++ +D A F GL L L+LD
Sbjct: 65 S-----------NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113
Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAF 207
L+ + F L L L + N L D F LG L+ L L G ++++ + AF
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173
Query: 208 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 267
RGL L L+L NR+ + L RL L + N S L L L+ L +
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233
Query: 268 G 268
Sbjct: 234 D 234
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 69.7 bits (169), Expect = 7e-14
Identities = 40/253 (15%), Positives = 72/253 (28%), Gaps = 11/253 (4%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
+ + + D L ++P L + N+ T + RL+ L+L
Sbjct: 9 VASHLEVNCDKRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQLNLD-- 63
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 257
+ L L D + + L T + + +
Sbjct: 64 ---RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 258 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLK 317
+ E+ N + N L + G L GL NL L L+
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180
Query: 318 ENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKS 377
EN+ + + L + NP C C IL+ R L + +K
Sbjct: 181 ENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVK--- 237
Query: 378 LISLSAEDLGCAG 390
++ + + C
Sbjct: 238 AMTSNVASVQCDN 250
Score = 63.6 bits (153), Expect = 8e-12
Identities = 37/226 (16%), Positives = 61/226 (26%), Gaps = 50/226 (22%)
Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG 447
C LT + + + L L++N L + L TRL +L + + + +
Sbjct: 17 CDKRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQ 71
Query: 448 CFKGLSYLKRLEITGA-------------------------------------------- 463
L L L+++
Sbjct: 72 VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 464 -SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM 522
N + N L + L GL NL L L+EN+ + +
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 523 LAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLK 568
L + NP C C IL+ R L + +K
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVK 237
Score = 57.4 bits (137), Expect = 9e-10
Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 4/196 (2%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGF 88
N + NL +P L LS N + T + + Y L ++L + + G
Sbjct: 16 NCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT 75
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
P L L L+HN+ ++ + V NR++ + GL L+ LYL
Sbjct: 76 LP--VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR 208
N+L+++P L +L + N T L G NGL L L L+ L I F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF- 192
Query: 209 GLSGLRSLVLTDNRLQ 224
G L L N
Sbjct: 193 GSHLLPFAFLHGNPWL 208
Score = 42.8 bits (99), Expect = 6e-05
Identities = 44/274 (16%), Positives = 87/274 (31%), Gaps = 16/274 (5%)
Query: 227 PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNL 286
P ++SK+ E+ + + L K L ++ + L L
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDT---TILHLSE-NLLYTFSLATLMPYTRL 57
Query: 287 ETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC 346
L L++ K +G L L L + + + +++ A L +
Sbjct: 58 TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 347 GCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSG 406
G + + + P L + A LT + GL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL----SLANNNLTELPAGLLNGLEN 173
Query: 407 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 466
L +L+L +N L +IP K L + N + C + Y +R A N+
Sbjct: 174 LDTLLLQENSLYTIP-KGFFGSHLLPFAFLHGNPWL-----CNCEILYFRRWLQDNAENV 227
Query: 467 TRVRKGAFADNL--NLETLTLNKNPKLKIIEEDA 498
++G + N+ ++ + + K + +
Sbjct: 228 YVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPG 261
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 54.4 bits (129), Expect = 4e-09
Identities = 37/181 (20%), Positives = 65/181 (35%), Gaps = 9/181 (4%)
Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN-GFSMLEAGCFKGLSYLKRLEITGASNL 272
++ T L+ IP EL + N + G F L +L +LE+
Sbjct: 11 TTVDCTGRGLKEIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 273 TRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA-W 331
+ E K I +GL L LNL +N +
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIK--EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 332 PELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGCA 389
L ++++A NP C C++ W E L +++ A C +P+ ++ + L + C+
Sbjct: 126 NSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCS 185
Query: 390 G 390
Sbjct: 186 S 186
Score = 49.4 bits (116), Expect = 2e-07
Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 9/177 (5%)
Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN-GFSMLEAGCFKGLSYLKRLEITGASNL 466
++ T L+ IP EL + N + G F L +L +LE+
Sbjct: 11 TTVDCTGRGLKEIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 467 TRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-W 525
+ E K I +GL L LNL +N +
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIK--EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 526 PELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDL 580
L ++++A NP C C++ W E L +++ A C +P+ ++ + L +
Sbjct: 126 NSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182
Score = 37.9 bits (86), Expect = 0.001
Identities = 25/141 (17%), Positives = 39/141 (27%), Gaps = 21/141 (14%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHT 78
P+ + + L IP L+L+ N +
Sbjct: 3 PAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDN---------ELGRISSDGLFGRL 53
Query: 79 TWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGL 138
L+ + + S + G+N+I I F GL
Sbjct: 54 PHLVKLELKR------------NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101
Query: 139 TALRILYLDDNQLRSVPTPSF 159
L+ L L DNQ+ V SF
Sbjct: 102 HQLKTLNLYDNQISCVMPGSF 122
Score = 32.9 bits (73), Expect = 0.066
Identities = 24/176 (13%), Positives = 53/176 (30%), Gaps = 7/176 (3%)
Query: 313 HLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAP 372
++ + + + +N + + +
Sbjct: 12 TVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69
Query: 373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 432
+ ++L + IS+ F GL L++L L DN++ + L L
Sbjct: 70 EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129
Query: 433 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN 488
L + N F+ C L++ + N R GA + +++ L +
Sbjct: 130 SLNLASNPFN-----CNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHS 180
Score = 29.4 bits (64), Expect = 0.87
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 3/119 (2%)
Query: 95 VELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSV 154
V+ K P+ I + + F L L L L NQL +
Sbjct: 13 VDCTGRGLKEIPRDIPLHT---TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69
Query: 155 PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGL 213
+F + EL++G N +++ F GL +L L+L ++ + +F L+ L
Sbjct: 70 EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128
Score = 29.4 bits (64), Expect = 0.91
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 200 TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLS 259
IS+ F GL L++L L DN++ + L L L + N F+ C L+
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN-----CNCHLA 145
Query: 260 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN 294
+ + N R GA + +++ L +
Sbjct: 146 WFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHS 180
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 55.8 bits (133), Expect = 7e-09
Identities = 64/354 (18%), Positives = 123/354 (34%), Gaps = 32/354 (9%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
L +++ L G+ +I L+ L + ++N+L I L LT+L ++ + N
Sbjct: 43 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNN 98
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGAL 305
+ + L +++ ++ + L L + T++ L
Sbjct: 99 QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALS------- 151
Query: 306 VGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAV 365
L + + + L +DI+ N + + L + T+
Sbjct: 152 ---GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 208
Query: 366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQL 425
+ +L ++L G L +I L+ L L L +N++ ++ L
Sbjct: 209 ISDITPLGILTNL-----DELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--L 259
Query: 426 SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTL 485
S LT+L EL++G N S + L+ L L + ++ NL LTL
Sbjct: 260 SGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314
Query: 486 NKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 539
N I + + L L L N + S S+ + + N I
Sbjct: 315 YFN---NISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS 364
Score = 53.9 bits (128), Expect = 2e-08
Identities = 32/209 (15%), Positives = 68/209 (32%), Gaps = 36/209 (17%)
Query: 37 DVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVE 96
D+ P ++ L L+ N++K + + + +L +DL++ I P L +
Sbjct: 211 DITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQ-----ISNLAPLSGLTK 264
Query: 97 LQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT 156
L + + + N D + L L L L N + +
Sbjct: 265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS- 323
Query: 157 PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSL 216
+ L +L L ++++S + L+ + L
Sbjct: 324 -------------------------PVSSLTKLQRLFFANNKVSDVS--SLANLTNINWL 356
Query: 217 VLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
N++ + L+ LTR+ +L +
Sbjct: 357 SAGHNQISDLTP--LANLTRITQLGLNDQ 383
Score = 51.9 bits (123), Expect = 1e-07
Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 18/200 (9%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 180
I N+IS I T L L L+ NQL+ + + L L +L + N + LA
Sbjct: 203 IATNNQISDITPLGIL--TNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP 258
Query: 181 GAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
+GL +L+ L L ++NIS GL+ L +L L +N+L+ I L L L
Sbjct: 259 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYL 312
Query: 241 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTI 300
+ N S + L+ L+RL + ++ V + A+ N+ L+ N ++ +
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFAN-NKVSDVS--SLANLTNINWLSAGHN-QISDL 366
Query: 301 EEGALVGLPNLYHLNLKENA 320
L L + L L + A
Sbjct: 367 TP--LANLTRITQLGLNDQA 384
Score = 49.2 bits (116), Expect = 7e-07
Identities = 70/349 (20%), Positives = 115/349 (32%), Gaps = 35/349 (10%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
I ID E L L + +NQL + L L ++ + N + A
Sbjct: 54 LGIKSID--GVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPLANL 109
Query: 185 GLGRL------------SALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 232
+L +S N +S L L L
Sbjct: 110 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK 169
Query: 233 KLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN 292
L L LE + + I + ++ + NL + L+LN
Sbjct: 170 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL--DELSLN 227
Query: 293 KNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILW 352
N +LK I G L L NL L+L N ++ + + +L + + N I NI
Sbjct: 228 GN-QLKDI--GTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQI---SNISP 280
Query: 353 LREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISD-NAFRGLSGLRSLV 411
L + N +L +L+ L NISD + L+ L+ L
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF-----NNISDISPVSSLTKLQRLF 335
Query: 412 LTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 460
+N++ + + L+ LT + L G N S L L+ + +L +
Sbjct: 336 FANNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 380
Score = 47.3 bits (111), Expect = 3e-06
Identities = 37/189 (19%), Positives = 62/189 (32%), Gaps = 19/189 (10%)
Query: 19 PSRFSTRDPSCNLQEANLDVIPSHSN-PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSH 77
P T +L L I + ++ ++ L L+ N+I + + + L + L
Sbjct: 214 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGA 272
Query: 78 TTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEG 137
I +EL N + + N IS I
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNL---TYLTLYFNNISDISP--VSS 327
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
LT L+ L+ +N++ V S L + L G N + L L R++ L L
Sbjct: 328 LTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGL--- 380
Query: 198 GLTNISDNA 206
+D A
Sbjct: 381 -----NDQA 384
Score = 46.9 bits (110), Expect = 4e-06
Identities = 63/353 (17%), Positives = 112/353 (31%), Gaps = 53/353 (15%)
Query: 30 NLQEANLDVIPSHSN-PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
L + N+ S ++ + L IK++D + +L ++ S+ +
Sbjct: 28 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ-----LTDI 81
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
P + L +L + + + + + D + LT L L L
Sbjct: 82 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-----------------GAFNGLGRLSA 191
N + + S + + LA+ L L +
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
L +++I+ + L L L N+L+ I T L+ LT L +L++ N S L
Sbjct: 202 LIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLA 257
Query: 252 AGCFKGLSYLKRLEITGAS--------NLTRVRKGAFADN-----------LNLETLTLN 292
GL+ L L++ LT + +N NL LTL
Sbjct: 258 P--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315
Query: 293 KNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 345
N + I + L L L N + S S+ + + N I
Sbjct: 316 FN-NISDISP--VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS 364
Score = 44.6 bits (104), Expect = 2e-05
Identities = 39/206 (18%), Positives = 68/206 (33%), Gaps = 40/206 (19%)
Query: 309 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 368
NL L+L N ++ + L +D+A N I + L ++ + + N
Sbjct: 219 TNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 277
Query: 369 SPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 428
+L +L + + L L L L N + I +S L
Sbjct: 278 ISPLAGLTALTNLELNENQL-------EDISPISNLKNLTYLTLYFNNISDIS--PVSSL 328
Query: 429 TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN 488
T+L+ L N S +++ +NLT N+ L+ N
Sbjct: 329 TKLQRLFFANNKVS----------------DVSSLANLT-----------NINWLSAGHN 361
Query: 489 PKLKIIEEDALVGLPNLYHLNLKENA 514
+I + L L + L L + A
Sbjct: 362 ---QISDLTPLANLTRITQLGLNDQA 384
Score = 44.6 bits (104), Expect = 2e-05
Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 17/209 (8%)
Query: 134 CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALD 193
LT L L +NQ+ + + L EL + N + G L L+ LD
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDI--GTLASLTNLTDLD 247
Query: 194 LRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG 253
L ++N++ GL+ L L L N++ +I L+ LT L LE+ +N +
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS-- 301
Query: 254 CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYH 313
L L L + +N++ + + L+ L N K+ + L L N+
Sbjct: 302 PISNLKNLTYLTLYF-NNISDI--SPVSSLTKLQRLFFANN-KVSDVSS--LANLTNINW 355
Query: 314 LNLKENAFTSFSESMLAWPELRTIDIAEN 342
L+ N + + + + + + +
Sbjct: 356 LSAGHNQISDLTP-LANLTRITQLGLNDQ 383
Score = 28.0 bits (61), Expect = 3.6
Identities = 47/292 (16%), Positives = 90/292 (30%), Gaps = 23/292 (7%)
Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
+ TL ++ +K+I+ + L NL +N N T + + +L I + N I
Sbjct: 45 QVTTLQADRL-GIKSID--GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQI 100
Query: 345 ECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGL 404
+ L + + + +L +S N +
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR-------------LELSSNTISDI 147
Query: 405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 464
S L L L L L LE + + I +
Sbjct: 148 SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 207
Query: 465 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 524
++ + NL+ L+LN N ++ + L L NL L+L N ++ + +
Sbjct: 208 QISDIT--PLGILTNLDELSLNGN---QLKDIGTLASLTNLTDLDLANNQISNLA-PLSG 261
Query: 525 WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLS 576
+L + + N I + L + + K+L L+
Sbjct: 262 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 313
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 52.2 bits (123), Expect = 4e-08
Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 6/221 (2%)
Query: 28 SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLS------LQHVDLSHTTWL 81
QE+ + IPS + L +++ + + D+
Sbjct: 12 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 71
Query: 82 IIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTAL 141
+ + E +E N P+ + + L
Sbjct: 72 DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 131
Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
+ + N L + N + + AFNG L
Sbjct: 132 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEE 191
Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 242
+ ++ F G SG L ++ R+ S+P+ L L +L
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232
Score = 47.6 bits (111), Expect = 1e-06
Identities = 26/225 (11%), Positives = 60/225 (26%), Gaps = 5/225 (2%)
Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLK--RLEITGASN 271
R + ++++ IP+ EL +++ G F G L+ +
Sbjct: 11 RVFLCQESKVTEIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67
Query: 272 LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAW 331
+ + L+ + N E + ++ + +
Sbjct: 68 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127
Query: 332 PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGA 391
++ I ++ + E
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187
Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 436
L + ++ F G SG L ++ R+ S+P+ L L +L
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232
Score = 39.1 bits (89), Expect = 8e-04
Identities = 37/230 (16%), Positives = 66/230 (28%), Gaps = 9/230 (3%)
Query: 270 SNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESML 329
S +T + N L KL+ I++GA G +L + + +N E+ +
Sbjct: 18 SKVTEIPSDLPR---NAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 73
Query: 330 AWPELR----TIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAED 385
+ I+ A N + L S + + D
Sbjct: 74 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 133
Query: 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
+ T ++ L L N +Q I + E N L
Sbjct: 134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP 193
Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE 495
F G S L+I+ + + + + L + KL +E
Sbjct: 194 NDVFHGASGPVILDISR-TRIHSLPSYGLENLKKLRARSTYNLKKLPTLE 242
Score = 34.1 bits (76), Expect = 0.030
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 69 SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFP 106
+D+S T +P G E +KL + K P
Sbjct: 202 GPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP 239
Score = 32.2 bits (71), Expect = 0.12
Identities = 13/87 (14%), Positives = 21/87 (24%), Gaps = 25/87 (28%)
Query: 70 LQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISR 129
+ + +P F V L ++ RI
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRT-----------------------RIHS 215
Query: 130 IDQACFEGLTALRILYLDDNQLRSVPT 156
+ E L LR L+ +PT
Sbjct: 216 LPSYGLENLKKLRARST--YNLKKLPT 240
Score = 32.2 bits (71), Expect = 0.14
Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 472 GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 510
F L +++ ++ + L L L +
Sbjct: 195 DVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARST 232
Score = 31.4 bits (69), Expect = 0.21
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 494 IEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDI 533
+ D G L++ S L +LR
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232
Score = 31.4 bits (69), Expect = 0.24
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 443
C + +T I + R L +L+ I S LE++EI QN
Sbjct: 15 CQESKVTEIPSDLPRNA---IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67
Score = 30.3 bits (66), Expect = 0.53
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLK 456
R + ++++ IP+ EL +++ G F G L+
Sbjct: 11 RVFLCQESKVTEIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLE 56
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 44.7 bits (105), Expect = 3e-06
Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 6/113 (5%)
Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 467
R L L L + L +L + L++ N L+ L+ LE+ AS+
Sbjct: 1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNA 54
Query: 468 RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE 520
A+ L+ L L N + LV P L LNL+ N+
Sbjct: 55 LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107
Score = 43.6 bits (102), Expect = 6e-06
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 273
R L L L + L +L + L++ N L+ L+ LE+ AS+
Sbjct: 1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNA 54
Query: 274 RVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE 326
A+ L+ L L N ++ LV P L LNL+ N+
Sbjct: 55 LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107
Score = 35.8 bits (82), Expect = 0.003
Identities = 28/125 (22%), Positives = 42/125 (33%), Gaps = 6/125 (4%)
Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
R+L+L L + L ++ L + N L L L L L N
Sbjct: 1 RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57
Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
+ A L+ L+L +NRLQ + L RL L + N E +
Sbjct: 58 VDGVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
Query: 261 LKRLE 265
L +
Sbjct: 116 LPSVS 120
Score = 32.4 bits (73), Expect = 0.052
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 2/108 (1%)
Query: 48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQ 107
+ L L+ + + + L + H+DLSH L L LQ + N
Sbjct: 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENV 58
Query: 108 QIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 155
V ++ + + + L +L L N L
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106
Score = 29.3 bits (65), Expect = 0.55
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 4/125 (3%)
Query: 288 TLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
L L L + L L + HL+L N + ++ A L + ++N +E
Sbjct: 2 VLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 348 CNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDL-GCAGAGLTNISDNAFRGLSG 406
+ L + + S A S L +L G + I + L
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118
Query: 407 LRSLV 411
+ S++
Sbjct: 119 VSSIL 123
Score = 27.8 bits (61), Expect = 1.9
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 3/100 (3%)
Query: 482 TLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 541
L L L ++ L L + HL+L N + ++ A L + ++N +E
Sbjct: 2 VLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 542 CNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLG 581
+ L + + S A S L +L
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 98
Score = 27.0 bits (59), Expect = 3.6
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 5/108 (4%)
Query: 74 DLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQA 133
L+H ++ E + L L+HN+ + + ++ + R +E+ + + +
Sbjct: 4 HLAHKDLTVLC--HLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALENVD 59
Query: 134 CFEGLTALRILYLDDNQLRSVPTP-SFIYLGMLAELRVGLNVFTTLAD 180
L L+ L L +N+L+ + L L + N
Sbjct: 60 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 42.5 bits (98), Expect = 3e-05
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 28/112 (25%)
Query: 291 LNKNPKLKTIEEGALVGLPNLYHLNLK------------------------ENAFTSFSE 326
+ L+ +E L GL L +L + NA S S
Sbjct: 38 IENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97
Query: 327 SMLAWPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSPAPLK 374
+ L+ + ++ NP+ C C + WL+ + C+ PL
Sbjct: 98 KTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA 149
Score = 42.1 bits (97), Expect = 4e-05
Identities = 35/169 (20%), Positives = 49/169 (28%), Gaps = 32/169 (18%)
Query: 405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI-GQNGFSMLEAGCFKGLSYLKRLEITGA 463
G L T + L L EL I Q LE +GL L+ L I +
Sbjct: 8 HGSSGLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 464 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 523
P L LNL NA S S +
Sbjct: 67 GLRFVAPDAFHFT--------------------------PRLSRLNLSFNALESLSWKTV 100
Query: 524 AWPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSPAPLK 568
L+ + ++ NP+ C C + WL+ + C+ PL
Sbjct: 101 QGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA 149
Score = 27.4 bits (59), Expect = 3.2
Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 11/138 (7%)
Query: 95 VELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSV 154
+ + + + + I Q + ++ GL LR L + + LR V
Sbjct: 13 LRCTRDGALDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71
Query: 155 PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLR 214
+F + L+ L + N +L+ GL +S N LR
Sbjct: 72 APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE---------LVLSGNPLHCSCALR 122
Query: 215 SLV-LTDNRLQSIPTKQL 231
L + L +P ++L
Sbjct: 123 WLQRWEEEGLGGVPEQKL 140
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 43.7 bits (101), Expect = 4e-05
Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 33/142 (23%)
Query: 96 ELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 155
EL + + + S +S ++ N S ++ + +L L + +N+L +P
Sbjct: 241 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP 300
Query: 156 TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRS 215
RL L L + + L+
Sbjct: 301 ----------------------------ALPPRLERLIASFNHLAEVPEL----PQNLKQ 328
Query: 216 LVLTDNRLQSIPTKQLSKLTRL 237
L + N L+ P + L
Sbjct: 329 LHVEYNPLREFP-DIPESVEDL 349
Score = 34.4 bits (77), Expect = 0.030
Identities = 56/350 (16%), Positives = 89/350 (25%), Gaps = 48/350 (13%)
Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
L+L GL+++ + L SLV + N L +P + L L S
Sbjct: 40 AHELELNNLGLSSLPEL----PPHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKALS 94
Query: 249 MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKT--------- 299
L +LE + K DN +L+ L
Sbjct: 95 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154
Query: 300 IEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVR 359
+ E + + + L + E P L
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214
Query: 360 RNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQS 419
+ L+ ++S+N F GLS L + N +
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274
Query: 420 IPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN 479
LEEL + N L A
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLIELPALPP-----------------------------R 305
Query: 480 LETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELR 529
LE L + N L + E NL L+++ N F + + +LR
Sbjct: 306 LERLIASFN-HLAEVPEL----PQNLKQLHVEYNPLREFPDIPESVEDLR 350
Score = 34.0 bits (76), Expect = 0.041
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
N+ L +P+ P ++RL+ S N + V +L+ + + + P +
Sbjct: 290 NVSNNKLIELPA-LPPRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFP----D 341
Query: 90 PQEKLVELQLN 100
E + +L++N
Sbjct: 342 IPESVEDLRMN 352
Score = 30.9 bits (68), Expect = 0.38
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 11/84 (13%)
Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
L LN L ++ E P+L L N+ T E L+++ + N +
Sbjct: 39 QAHELELNNL-GLSSLPEL----PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNL 90
Query: 345 ECGCNILWLREMLVRRNTSAVFCN 368
+ L +L S
Sbjct: 91 ---KALSDLPPLLEYLGVSNNQLE 111
Score = 29.4 bits (64), Expect = 1.1
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 11/84 (13%)
Query: 479 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 538
L LN L + E P+L L N+ T E L+++ + N +
Sbjct: 39 QAHELELNNL-GLSSLPEL----PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNL 90
Query: 539 ECGCNILWLREMLVRRNTSAVFCN 562
+ L +L S
Sbjct: 91 ---KALSDLPPLLEYLGVSNNQLE 111
Score = 28.6 bits (62), Expect = 2.4
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 30 NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSH 77
L L +P P ++ LV S N + + SL+ + + +
Sbjct: 44 ELNNLGLSSLPE-LPPHLESLVASCNSLTELPELPQ---SLKSLLVDN 87
Score = 28.3 bits (61), Expect = 2.5
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 211 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML 250
L L + L S+P LE L N + L
Sbjct: 38 RQAHELELNNLGLSSLP----ELPPHLESLVASCNSLTEL 73
Score = 28.3 bits (61), Expect = 2.5
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML 444
L L + L S+P LE L N + L
Sbjct: 38 RQAHELELNNLGLSSLP----ELPPHLESLVASCNSLTEL 73
Score = 27.5 bits (59), Expect = 4.6
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 382 SAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 441
A +L GL+++ + L SLV + N L +P L+ L + N
Sbjct: 39 QAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELP----ELPQSLKSLLVDNNNL 90
Query: 442 SML 444
L
Sbjct: 91 KAL 93
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 38.7 bits (88), Expect = 0.001
Identities = 45/341 (13%), Positives = 92/341 (26%), Gaps = 46/341 (13%)
Query: 212 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN 271
L+ +T +S+ L + ++E+ + N A
Sbjct: 9 SLKLDAITTEDEKSVF-AVLLEDDSVKEIVLSGNTIG-----------------TEAARW 50
Query: 272 LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGA--LVGLPNLYHLNLKENAFTSFSESML 329
L+ A +LE + + +E L L K + +
Sbjct: 51 LSE----NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 106
Query: 330 AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCA 389
+ ID L + + + K+ + + C
Sbjct: 107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 166
Query: 390 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE-------------- 435
L N S + L+ T +Q+ + + LE L
Sbjct: 167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 226
Query: 436 ----IGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP-- 489
L++ L ++ V + +N+ L+TL L N
Sbjct: 227 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 286
Query: 490 --KLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL 528
++ ++ +P+L L L N F+ + + E+
Sbjct: 287 LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327
Score = 36.8 bits (83), Expect = 0.007
Identities = 45/333 (13%), Positives = 87/333 (26%), Gaps = 24/333 (7%)
Query: 20 SRFSTRDPSCNLQEANLDVIPSH-----SNPSIQRLVLSTNRI-----KTVDSAIPIYLS 69
+RFS S L + S + S++ +VLS N I + + I
Sbjct: 1 ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 60
Query: 70 LQHVDLSHTTWLIIPIGGFEPQEKLVELQLN----HNKHFPQQIVCSIISPRRVEIFGQN 125
L+ + S + E L++ L H ++ ++
Sbjct: 61 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120
Query: 126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 185
GL + L + G N
Sbjct: 121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE------NGS 174
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
+ + L + +L + K L
Sbjct: 175 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 234
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP----KLKTIE 301
L++ L ++ V + +N+ L+TL L N ++T++
Sbjct: 235 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 294
Query: 302 EGALVGLPNLYHLNLKENAFTSFSESMLAWPEL 334
+P+L L L N F+ + + E+
Sbjct: 295 TVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327
Score = 30.2 bits (66), Expect = 0.61
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 11/65 (16%)
Query: 188 RLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-----------KQLSKLTR 236
RL ++ + + + L L L NR + +L
Sbjct: 279 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 338
Query: 237 LEELE 241
L+++E
Sbjct: 339 LDDME 343
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 36.8 bits (84), Expect = 0.002
Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 1/136 (0%)
Query: 183 FNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 242
+ R LDLRG + I +N L ++ +DN ++ + L + + +
Sbjct: 14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNN 72
Query: 243 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEE 302
+ L L + A +L + N K
Sbjct: 73 NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132
Query: 303 GALVGLPNLYHLNLKE 318
+ +P + L+ ++
Sbjct: 133 YVIYKVPQVRVLDFQK 148
Score = 35.3 bits (80), Expect = 0.008
Identities = 15/133 (11%), Positives = 43/133 (32%), Gaps = 1/133 (0%)
Query: 39 IPSHSNPS-IQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVEL 97
++N + L L +I +++ +D S + + K + +
Sbjct: 11 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLV 70
Query: 98 QLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP 157
N + + ++ + + + + D L +L L + N + +
Sbjct: 71 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 130
Query: 158 SFIYLGMLAELRV 170
+ + ++RV
Sbjct: 131 RLYVIYKVPQVRV 143
Score = 28.4 bits (62), Expect = 1.4
Identities = 9/61 (14%), Positives = 16/61 (26%)
Query: 493 IIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLV 552
I + L+L+ + ID ++N I LR +
Sbjct: 8 IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKT 67
Query: 553 R 553
Sbjct: 68 L 68
Score = 27.2 bits (59), Expect = 4.0
Identities = 8/55 (14%), Positives = 14/55 (25%)
Query: 305 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVR 359
L+L+ + ID ++N I LR +
Sbjct: 14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTL 68
Score = 26.8 bits (58), Expect = 4.6
Identities = 13/115 (11%), Positives = 33/115 (28%)
Query: 398 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 457
+N L ++ +DN ++ + L + + + +
Sbjct: 34 ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 93
Query: 458 LEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 512
L L + A +L + N K + +P + L+ ++
Sbjct: 94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 148
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 36.2 bits (82), Expect = 0.006
Identities = 33/206 (16%), Positives = 71/206 (34%), Gaps = 14/206 (6%)
Query: 37 DVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVE 96
D + I L + T+ + +L ++L I P + L +
Sbjct: 33 DTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDN-----QITDLAPLKNLTK 86
Query: 97 LQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT 156
+ P + V +I + ++ D GL+ L++LYLD NQ+ ++
Sbjct: 87 ITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP 146
Query: 157 PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSL 216
+ + + L +L+ L +++IS L L +
Sbjct: 147 LAGLTNLQYLS----IGNAQVSDLTPLANLSKLTTLKADDNKISDIS--PLASLPNLIEV 200
Query: 217 VLTDNRLQSIPTKQLSKLTRLEELEI 242
L +N++ + L+ + L + +
Sbjct: 201 HLKNNQISDVSP--LANTSNLFIVTL 224
Score = 30.4 bits (67), Expect = 0.52
Identities = 28/214 (13%), Positives = 52/214 (24%), Gaps = 42/214 (19%)
Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
L K + L + L+ T+ E + L +++ +N I
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQI 75
Query: 345 ECG-------------------------------------CNILWLREMLVRRNTSAVFC 367
+ L + V
Sbjct: 76 TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135
Query: 368 NSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK 427
+ S ++ + LS L +L DN++ I L+
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LAS 193
Query: 428 LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
L L E+ + N S + S L + +T
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
Score = 28.8 bits (63), Expect = 1.7
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Query: 479 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 538
L K + + L + L+ T+ E + L +++ +N I
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQI 75
Query: 539 ECGCNILWLREM 550
+ L ++
Sbjct: 76 TDLAPLKNLTKI 87
Score = 28.5 bits (62), Expect = 1.7
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 474 FADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 533
A+ L TL + N KI + L LPNL ++LK N + S + L + +
Sbjct: 169 LANLSKLTTLKADDN---KISDISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTL 224
Score = 28.1 bits (61), Expect = 2.8
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 280 FADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 339
A+ L TL + N K+ I L LPNL ++LK N + S + L + +
Sbjct: 169 LANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTL 224
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 35.4 bits (80), Expect = 0.010
Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 19/164 (11%)
Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE--------------SMLA 330
+ TL ++ +K+I+ + L NL +N N T + + +A
Sbjct: 41 QVTTLQADRL-GIKSID--GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA 97
Query: 331 WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAG 390
+ N + + L S + S +S
Sbjct: 98 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF 157
Query: 391 AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 434
+ L+ L L ++ N++ I L+KLT LE L
Sbjct: 158 SSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESL 199
Score = 32.7 bits (73), Expect = 0.079
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
L+ L L ++ N++ I L+KLT LE L
Sbjct: 167 PLANLTTLERLDISSNKVSDISV--LAKLTNLESL 199
Score = 26.9 bits (58), Expect = 5.9
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 135 FEGLTALRILYLDDNQLRSVPTPS 158
LT L L + N++ + +
Sbjct: 168 LANLTTLERLDISSNKVSDISVLA 191
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 35.7 bits (80), Expect = 0.013
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 477 NLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-----SFSESMLAWPELRTI 531
+L++++L + + L L + L + T S ++ P L +
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 532 DIAENPI 538
++ N +
Sbjct: 61 NLRSNEL 67
Score = 35.0 bits (78), Expect = 0.022
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 283 NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT-----SFSESMLAWPELRTI 337
+L++++L + L L + L + T S ++ P L +
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 338 DIAENPI 344
++ N +
Sbjct: 61 NLRSNEL 67
Score = 33.8 bits (75), Expect = 0.056
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 189 LSALDLRGAGLTNISDNAFR----GLSGLRSLVLTDNRLQSIPTKQLSK----LTRLEEL 240
+ +LD++ +SD + L + + L D L K +S L EL
Sbjct: 4 IQSLDIQC---EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 241 EIGQNGFS 248
+ N
Sbjct: 61 NLRSNELG 68
Score = 32.6 bits (72), Expect = 0.13
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 180 DGAFNGLGRLSALDLRGAGLTNISD----NAFRGLSGLRSLVLTDNRLQSIPTKQLSK-- 233
G L L L +++ S LR L L++N L QL +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 234 ---LTRLEELEIGQNGFS 248
LE+L + +S
Sbjct: 422 RQPGCLLEQLVLYDIYWS 439
Score = 30.7 bits (67), Expect = 0.46
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 379 ISLSAEDLGCAGAGLTNISDNAFR----GLSGLRSLVLTDNRLQSIPTKQLSK----LTR 430
+ + + D+ C +SD + L + + L D L K +S
Sbjct: 2 LDIQSLDIQC-----EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA 56
Query: 431 LEELEIGQNGFS 442
L EL + N
Sbjct: 57 LAELNLRSNELG 68
Score = 30.7 bits (67), Expect = 0.56
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 15/103 (14%)
Query: 132 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 191
Q + + LR+L+L D + S LA + + L LS
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSS------LAATLLANHSLREL---------DLSN 406
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 234
L AG+ + ++ + L LVL D +L L
Sbjct: 407 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
Score = 28.8 bits (62), Expect = 2.0
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 375 YKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK-----LT 429
L L D + + ++++ LR L L++N L QL +
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLA-ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 430 RLEELEIGQNGFS 442
LE+L + +S
Sbjct: 427 LLEQLVLYDIYWS 439
Score = 27.6 bits (59), Expect = 5.3
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 298 KTIEEGALVGLPNLYHLNLKENAFT-----SFSESMLAWPELRTIDIAENPI 344
+ + +G L L L + + S + ++LA LR +D++ N +
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409
Score = 27.2 bits (58), Expect = 5.4
Identities = 11/80 (13%), Positives = 20/80 (25%), Gaps = 15/80 (18%)
Query: 471 KGAFADNLNLETLTLNKNPKLKIIEE------DALVGLPNLYHLNLKENAFTSFSESMLA 524
+G L L L + + L+ +L L+L N L
Sbjct: 362 QGLGQPGSVLRVLWLADC---DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418
Query: 525 ------WPELRTIDIAENPI 538
L + + +
Sbjct: 419 ESVRQPGCLLEQLVLYDIYW 438
Score = 27.2 bits (58), Expect = 6.0
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 10/62 (16%)
Query: 28 SCNLQEANLDVIPS--HSNPSIQRLVLSTNRIKTVDSAIPI-------YLSLQHVDLSHT 78
C L EA I S NP++ L L +N + + +Q + L +
Sbjct: 36 DCGLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Query: 79 TW 80
Sbjct: 95 CL 96
Score = 26.9 bits (57), Expect = 7.5
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 11/78 (14%)
Query: 277 KGAFADNLNLETLTLNKN----PKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA-- 330
+G L L L ++ L+ +L L+L N L
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNNCLGDAGILQLVES 420
Query: 331 ----WPELRTIDIAENPI 344
L + + +
Sbjct: 421 VRQPGCLLEQLVLYDIYW 438
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 34.6 bits (78), Expect = 0.019
Identities = 25/166 (15%), Positives = 55/166 (33%), Gaps = 19/166 (11%)
Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTS--------------FSESMLA 330
+++ + N + +K+++ + LPN+ L L N T E+ +
Sbjct: 47 SIDQIIANNS-DIKSVQ--GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK 103
Query: 331 WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAG 390
+ N + LV + +++S + +
Sbjct: 104 DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 163
Query: 391 AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 436
GL+ L++L L+ N + + L+ L L+ LE+
Sbjct: 164 EDNQISDIVPLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLEL 207
Score = 32.7 bits (73), Expect = 0.079
Identities = 27/174 (15%), Positives = 65/174 (37%), Gaps = 13/174 (7%)
Query: 69 SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRIS 128
S+ + +++ I + G + + +L LN NK + + ++ + + +
Sbjct: 47 SIDQIIANNSD--IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD 104
Query: 129 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR 188
+ L +L + + + + + + L + L +
Sbjct: 105 LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL-------GNNKITDITVLSRLTK 157
Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 242
L L L +++I GL+ L++L L+ N + + L+ L L+ LE+
Sbjct: 158 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLEL 207
Score = 29.6 bits (65), Expect = 0.87
Identities = 36/190 (18%), Positives = 73/190 (38%), Gaps = 13/190 (6%)
Query: 30 NLQEANL-DVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
NL++ ++ D + + SI +++ + + IK+V I ++ + L+ +
Sbjct: 30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-----KLTDI 83
Query: 89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
+P L L + + S+ ++++ D L L LYL +
Sbjct: 84 KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGN 143
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR 208
N++ + L L L + N + + GL +L L L ++++ A
Sbjct: 144 NKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALA 197
Query: 209 GLSGLRSLVL 218
GL L L L
Sbjct: 198 GLKNLDVLEL 207
Score = 26.9 bits (58), Expect = 5.7
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 479 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 533
L L +I + L GL L +L L +N + ++ L +++
Sbjct: 154 RLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLEL 207
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 33.6 bits (75), Expect = 0.061
Identities = 11/54 (20%), Positives = 15/54 (27%)
Query: 294 NPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
N ++ L L L+ LN+ N A N CG
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Score = 33.2 bits (74), Expect = 0.070
Identities = 11/54 (20%), Positives = 15/54 (27%)
Query: 488 NPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 541
N ++ L L L+ LN+ N A N CG
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Score = 33.2 bits (74), Expect = 0.080
Identities = 22/119 (18%), Positives = 29/119 (24%), Gaps = 1/119 (0%)
Query: 55 NRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSII 114
NR+ L+L VDLS F + ++ L N +
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 115 SPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 173
NRI L L L + N L P L N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQGGNLQRFDVSAYANN 301
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 29.3 bits (65), Expect = 0.19
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 100 NHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGL 138
H+ I C+ S + + R+ ACF L
Sbjct: 24 RHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDL 62
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 30.6 bits (68), Expect = 0.26
Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 7/129 (5%)
Query: 412 LTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRK 471
L +++ + +SK + + G + L S++ +
Sbjct: 4 LKPEQVEQLK-LIMSKRYDGSQQALDLKGLRSDPD--LVAQNIDVVLNR--RSSMAATLR 58
Query: 472 GAFADNLNLETLTL-NKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELR 529
+ L +L L N + PNL LNL N S E + +L
Sbjct: 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118
Query: 530 TIDIAENPI 538
+ + N +
Sbjct: 119 ELWLDGNSL 127
Score = 28.6 bits (63), Expect = 1.1
Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 277 KGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRT 336
K + + L+ L++ + LV LN + + + PEL +
Sbjct: 13 KLIMSKRYDGSQQALDLK-GLRSDPD--LVAQNIDVVLNRRSSMAATLRIIEENIPELLS 69
Query: 337 IDIAENPIECGCNILWLREML 357
++++ N + ++ + +
Sbjct: 70 LNLSNNRLYRLDDMSSIVQKA 90
Score = 28.6 bits (63), Expect = 1.1
Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 471 KGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT 530
K + + L+ L+ + LV LN + + + PEL +
Sbjct: 13 KLIMSKRYDGSQQALDLK-GLRSDPD--LVAQNIDVVLNRRSSMAATLRIIEENIPELLS 69
Query: 531 IDIAENPIECGCNILWLREML 551
++++ N + ++ + +
Sbjct: 70 LNLSNNRLYRLDDMSSIVQKA 90
Score = 27.1 bits (59), Expect = 4.7
Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 7/128 (5%)
Query: 44 NPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK 103
+ S Q L L R A I + L T II E +L+ L L++N+
Sbjct: 21 DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRII----EENIPELLSLNLSNNR 76
Query: 104 HFPQQIVCSIISPR---RVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFI 160
+ + SI+ ++ N + + L L+LD N L
Sbjct: 77 LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136
Query: 161 YLGMLAEL 168
Y+ + E
Sbjct: 137 YISAIRER 144
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 27.4 bits (60), Expect = 5.6
Identities = 31/174 (17%), Positives = 52/174 (29%), Gaps = 9/174 (5%)
Query: 120 EIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 179
+ R + +A + L L F L LR + +
Sbjct: 259 GLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVP 318
Query: 180 DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEE 239
+ + L +R G ++D GL+ L V + S + +KL
Sbjct: 319 GHEVDDIDHLGNRRIRTVG-ELMTDQFRVGLARLARGVRERMLMGSEDSLTPAKLVNSRP 377
Query: 240 LEIGQNGFS--------MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN 285
LE F E L + +R+ G LTR R G +++
Sbjct: 378 LEAAIREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFDVRDVH 431
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.394
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,025,339
Number of extensions: 93940
Number of successful extensions: 403
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 142
Length of query: 581
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 491
Effective length of database: 1,171,896
Effective search space: 575400936
Effective search space used: 575400936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)