BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8552
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex
pdb|4A55|B Chain B, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 279
Score = 178 bits (451), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 80/108 (74%), Positives = 97/108 (89%), Gaps = 1/108 (0%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHR 269
SL+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NKLIKIFHR
Sbjct: 6 SLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHR 65
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
+G+YGFS+P F+SVVELIN+Y++ESL+QYN LD +LLYPVS++ D
Sbjct: 66 DGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 113
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 36/43 (83%)
Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 381
FS+P F+SVVELIN+Y++ESL+QYN LD +LLYPVS++ D
Sbjct: 71 FSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 113
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+SR + L DGTFL+R ++T G Y L++ G K ++ + +GF++P
Sbjct: 17 ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL- 75
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ S+ L+ HY SL ++N L L YPV
Sbjct: 76 TFSSVVELINHYRNESLAQYNPKLDVKLLYPV 107
>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
pdb|3HIZ|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 373
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 79/108 (73%), Positives = 97/108 (89%), Gaps = 1/108 (0%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHR 269
SL++AEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NKLIKIFHR
Sbjct: 6 SLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHR 65
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
+G+YGFS+P F+SVVELIN+Y++ESL+QYN LD +LLYPVS++ D
Sbjct: 66 DGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 113
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 418 EKTWLVRMS-RAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFG 475
EKTW V S R +AE LL G+ DGTFL+R S+ G YA S+V G KHC++ +T G+G
Sbjct: 300 EKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYG 359
Query: 476 FAEPFNIYPSLGAL 489
FAEP+N+Y SL L
Sbjct: 360 FAEPYNLYSSLKEL 373
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 36/43 (83%)
Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 381
FS+P F+SVVELIN+Y++ESL+QYN LD +LLYPVS++ D
Sbjct: 71 FSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 113
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+SR + L DGTFL+R ++T G Y L++ G K ++ + +GF++P
Sbjct: 17 ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL- 75
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ S+ L+ HY SL ++N L L YPV
Sbjct: 76 TFSSVVELINHYRNESLAQYNPKLDVKLLYPV 107
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
W G +R+ + L DGTFLVR+ S+K G Y ++ G K I YGF+
Sbjct: 303 WNVGSSNRNKAENLLRGKRDGTFLVRE-SSKQGCYACSVVVDGEVKHCVINKTATGYGFA 361
Query: 277 EPFK-FTSVVEL 287
EP+ ++S+ EL
Sbjct: 362 EPYNLYSSLKEL 373
>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain
pdb|2IUH|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With C-Kit Phosphotyrosyl Peptide
pdb|2IUI|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
pdb|2IUI|B Chain B, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
Length = 120
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/108 (73%), Positives = 97/108 (89%), Gaps = 1/108 (0%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHR 269
SL++AEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NKLIKIFHR
Sbjct: 7 SLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHR 66
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
+G+YGFS+P F+SVVELIN+Y++ESL+QYN LD +LLYPVS++ D
Sbjct: 67 DGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 114
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 36/43 (83%)
Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 381
FS+P F+SVVELIN+Y++ESL+QYN LD +LLYPVS++ D
Sbjct: 72 FSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 114
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 407 AVASTVDFESGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPK 463
+ + + ++ E W +SR + L DGTFL+R ++T G Y L++ G K
Sbjct: 1 GMNNNMSLQNAEWYW-GDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNK 59
Query: 464 HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
++ + +GF++P + S+ L+ HY SL ++N L L YPV
Sbjct: 60 LIKIFHRDGKYGFSDPL-TFSSVVELINHYRNESLAQYNPKLDVKLLYPV 108
>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
pdb|2PNB|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
Length = 104
Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 78/103 (75%), Positives = 93/103 (90%), Gaps = 1/103 (0%)
Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRN 270
L+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NKLIKIFHR+
Sbjct: 1 LQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD 60
Query: 271 GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
G+YGFS+P F SVVELIN+Y++ESL+QYN LD +LLYPVS+
Sbjct: 61 GKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 103
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 33/39 (84%)
Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
FS+P F SVVELIN+Y++ESL+QYN LD +LLYPVS+
Sbjct: 65 FSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 103
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+SR + L DGTFL+R ++T G Y L++ G K ++ + +GF++P
Sbjct: 11 ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL- 69
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ S+ L+ HY SL ++N L L YPV
Sbjct: 70 TFNSVVELINHYRNESLAQYNPKLDVKLLYPV 101
>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide
Derived From Polyomavirus Middle T Antigen
pdb|1FU6|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase
Length = 111
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/104 (75%), Positives = 93/104 (89%), Gaps = 1/104 (0%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHR 269
SL+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NK IKIFHR
Sbjct: 7 SLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHR 66
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+G+YGFS+P F SVVELIN+Y++ESL+QYN LD +LLYPVS+
Sbjct: 67 DGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 33/39 (84%)
Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
FS+P F SVVELIN+Y++ESL+QYN LD +LLYPVS+
Sbjct: 72 FSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+SR + L DGTFL+R ++T G Y L++ G K ++ + +GF++P
Sbjct: 18 ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYGFSDPL- 76
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ S+ L+ HY SL ++N L L YPV
Sbjct: 77 TFNSVVELINHYRNESLAQYNPKLDVKLLYPV 108
>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase
pdb|1OO4|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase Complexed
To A Peptide Derived From Pdgfr
Length = 111
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 77/104 (74%), Positives = 92/104 (88%), Gaps = 1/104 (0%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHR 269
SL+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NK IKIFHR
Sbjct: 7 SLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHR 66
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+G+YGFS+ F SVVELIN+Y++ESL+QYN LD +LLYPVS+
Sbjct: 67 DGKYGFSDSLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
FS+ F SVVELIN+Y++ESL+QYN LD +LLYPVS+
Sbjct: 72 FSDSLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+SR + L DGTFL+R ++T G Y L++ G K ++ + +GF++
Sbjct: 18 ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYGFSDSL- 76
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ S+ L+ HY SL ++N L L YPV
Sbjct: 77 TFNSVVELINHYRNESLAQYNPKLDVKLLYPV 108
>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 302
Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
Query: 418 EKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFG 475
E+TW V +++R QAE +LSG+ DGTFLIR S+ G YA S+V G KHC++Y T GFG
Sbjct: 193 ERTWYVGKINRTQAEEMLSGKRDGTFLIRESSQRGCYACSVVVDGDTKHCVIYRTATGFG 252
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 519
FAEP+N+Y SL LVLHY SL +HND L TLA+PV AP G
Sbjct: 253 FAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRAPGPG 296
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
WY G I+R + L+ DGTFL+R++S + G Y ++ G K I+ +GF+
Sbjct: 196 WYVGKINRTQAEEMLSGKRDGTFLIRESSQR-GCYACSVVVDGDTKHCVIYRTATGFGFA 254
Query: 277 EPFK-FTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
EP+ + S+ EL+ +Y+H SL Q+N L L +PV
Sbjct: 255 EPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPV 290
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 339 FSEPFK-FTSVVELINYYKHESLSQYNSTLDTRLLYPV 375
F+EP+ + S+ EL+ +Y+H SL Q+N L L +PV
Sbjct: 253 FAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPV 290
>pdb|1BFI|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, 30 Structures
pdb|1BFJ|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, Minimized Average Structure
Length = 112
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
Query: 418 EKTWLVRMS-RAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFG 475
EKTW V S R +AE LL G+ DGTFL+R S+ G YA S+V G KHC++ +T G+G
Sbjct: 9 EKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYG 68
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515
FAEP+N+Y SL LVLHY SL +HND L TLAYPV+A
Sbjct: 69 FAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
W G +R+ + L DGTFLVR++S K G Y ++ G K I YGF+
Sbjct: 12 WNVGSSNRNKAENLLRGKRDGTFLVRESS-KQGCYACSVVVDGEVKHCVINKTATGYGFA 70
Query: 277 EPFK-FTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
EP+ ++S+ EL+ +Y+H SL Q+N +L+ L YPV
Sbjct: 71 EPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPV 106
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 339 FSEPFK-FTSVVELINYYKHESLSQYNSTLDTRLLYPV 375
F+EP+ ++S+ EL+ +Y+H SL Q+N +L+ L YPV
Sbjct: 69 FAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPV 106
>pdb|1QAD|A Chain A, Crystal Structure Of The C-Terminal Sh2 Domain Of The P85
Alpha Regulatory Subunit Of Phosphoinositide 3-Kinase:
An Sh2 Domain Mimicking Its Own Substrate
Length = 111
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
Query: 418 EKTWLVRMS-RAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFG 475
EKTW V S R +AE LL G+ DGTFL+R S+ G YA S+V G KHC++ +T G+G
Sbjct: 8 EKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYG 67
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515
FAEP+N+Y SL LVLHY SL +HND L TLAYPV+A
Sbjct: 68 FAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 107
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
W G +R+ + L DGTFLVR++S K G Y ++ G K I YGF+
Sbjct: 11 WNVGSSNRNKAENLLRGKRDGTFLVRESS-KQGCYACSVVVDGEVKHCVINKTATGYGFA 69
Query: 277 EPFK-FTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
EP+ ++S+ EL+ +Y+H SL Q+N +L+ L YPV
Sbjct: 70 EPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPV 105
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 339 FSEPFK-FTSVVELINYYKHESLSQYNSTLDTRLLYPV 375
F+EP+ ++S+ EL+ +Y+H SL Q+N +L+ L YPV
Sbjct: 68 FAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPV 105
>pdb|1H9O|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit:
C-Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Crystal Structure
At 1.79 A
pdb|1PIC|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit: C-
Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Nmr, Minimized
Mean Structure
Length = 112
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
Query: 418 EKTWLVRMS-RAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFG 475
EKTW V S R +AE LL G+ DGTFL+R S+ G YA S+V G KHC++ +T G+G
Sbjct: 9 EKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYG 68
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515
FAEP+N+Y SL LVLHY SL +HND L TLAYPV+A
Sbjct: 69 FAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 214 DAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRY 273
+ W G +R+ + L DGTFLVR++S K G Y ++ G K I Y
Sbjct: 9 EKTWNVGSSNRNKAENLLRGKRDGTFLVRESS-KQGCYACSVVVDGEVKHCVINKTATGY 67
Query: 274 GFSEPFK-FTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
GF+EP+ ++S+ EL+ +Y+H SL Q+N +L+ L YPV
Sbjct: 68 GFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPV 106
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 339 FSEPFK-FTSVVELINYYKHESLSQYNSTLDTRLLYPV 375
F+EP+ ++S+ EL+ +Y+H SL Q+N +L+ L YPV
Sbjct: 69 FAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPV 106
>pdb|2VIF|A Chain A, Crystal Structure Of Socs6 Sh2 Domain In Complex With A
C-Kit Phosphopeptide
Length = 141
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 198 LDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRK 257
+DV ++ E L WYWG I+R + KLA+ DG+FLVRD+S +L+ R
Sbjct: 9 MDVTSLTE--ELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRS 66
Query: 258 GGTNKLIKIFHRNGRYGFSEP---FKFTSVVELINYYKHESLSQY----------NSTLD 304
G +I H NGR+ F E TS+V+LI + +S + ++T
Sbjct: 67 HGKTLHTRIEHSNGRFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATYP 126
Query: 305 TRLLYPVSRF 314
RL PVSRF
Sbjct: 127 VRLTNPVSRF 136
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTTGQY--ALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
++R +AE L+ PDG+FL+R S+ +Y +LS G H + + F F E ++
Sbjct: 31 ITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGRFSFYEQPDV 90
Query: 483 --YPSLGALVLHYAANS 497
+ S+ L+ H +S
Sbjct: 91 EGHTSIVDLIEHSIGDS 107
>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Syk-Derived Doubly Phosphorylated Peptide
Length = 107
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 47/94 (50%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
WY G + R LA+ +DGTFLVR E+ ++++ K IKI G Y +
Sbjct: 11 WYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRIT 70
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
E F + EL+ +Y+ SL +LDT L +P
Sbjct: 71 EKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFP 104
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
M RA AE++L+ R DGTFL+R ++A+SI + KH + E + E
Sbjct: 16 MERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEK-KA 74
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
+ L LV Y NSL++ L TTL +P
Sbjct: 75 FRGLTELVEFYQQNSLKDCFKSLDTTLQFP 104
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 312 SRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRL 371
+ F+ + ++ + A G+ R +E F + EL+ +Y+ SL +LDT L
Sbjct: 43 AEFAISIKYNVEVKHIKIMTAEGLYR-ITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTL 101
Query: 372 LYP 374
+P
Sbjct: 102 QFP 104
>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto-
Oncogene Protein Vav1
pdb|2ROR|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Tyrosine-Phosphorylated Peptide From Slp76
Length = 138
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
WY G + R LA+ +DGTFLVR E+ ++++ K IKI G Y +
Sbjct: 28 WYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRIT 87
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
E F + EL+ +Y+ SL +LDT L +P
Sbjct: 88 EKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFP 121
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
M RA AE++L+ R DGTFL+R ++A+SI + KH + E + E
Sbjct: 33 MERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEK-KA 91
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
+ L LV Y NSL++ L TTL +P P
Sbjct: 92 FRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKEP 125
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 311 VSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTR 370
+ F+ + ++ + A G+ R +E F + EL+ +Y+ SL +LDT
Sbjct: 59 AAEFAISIKYNVEVKHIKIMTAEGLYR-ITEKKAFRGLTELVEFYQQNSLKDCFKSLDTT 117
Query: 371 LLYP 374
L +P
Sbjct: 118 LQFP 121
>pdb|2DLZ|A Chain A, Solution Structure Of The Sh2 Domain Of Human Protein
Vav-2
Length = 118
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
W+ G++ R ++ L A GT+L+R+ + + ++++ K IK+ ++ +
Sbjct: 18 WFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHIT 77
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
E KF S++EL+ YY+ SL + LDT L YP S
Sbjct: 78 EAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYS 113
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 425 MSRAQAEALLSGRPDGTFLIR--PSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
M R Q + LL GT+LIR P+ ++A+SI + KH V E + E
Sbjct: 23 MERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEA-KK 81
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 519
+ SL LV +Y +SL+E L TTL YP P+SG
Sbjct: 82 FDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGPSSG 118
>pdb|2LNW|A Chain A, Identification And Structural Basis For A Novel
Interaction Between Vav2 And Arap3
pdb|2LNX|A Chain A, Solution Structure Of Vav2 Sh2 Domain
Length = 122
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
W+ G++ R ++ L A GT+L+R+ + + ++++ K IK+ ++ +
Sbjct: 24 WFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHIT 83
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
E KF S++EL+ YY+ SL + LDT L YP
Sbjct: 84 EAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYP 117
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 425 MSRAQAEALLSGRPDGTFLIR--PSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
M R Q + LL GT+LIR P+ ++A+SI + KH V E + E
Sbjct: 29 MERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEA-KK 87
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
+ SL LV +Y +SL+E L TTL YP
Sbjct: 88 FDSLLELVEYYQCHSLKESFKQLDTTLKYP 117
>pdb|2C9W|A Chain A, Crystal Structure Of Socs-2 In Complex With Elongin-B And
Elongin-C At 1.9a Resolution
Length = 169
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 9/102 (8%)
Query: 197 SLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLR 256
S+ A+++ L WYWG ++ ++ +KL + +GTFL+RD+S + T++++
Sbjct: 1 SMQAARLAKA--LRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVK 58
Query: 257 KGGTNKLIKIFHRNGRYGF-------SEPFKFTSVVELINYY 291
++I +++G++ S+ +F SVV LI+YY
Sbjct: 59 TSAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYY 100
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTTGQYALSI 456
E G+ W M+ +A+ L P+GTFLIR S+ Y L+I
Sbjct: 13 ELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTI 55
>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The
Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN
Length = 100
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 217 WYWGDISRDDVNDKLA--DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGRY 273
W++G ISR + +L A G FL+R + + +Y L++R + KI+ R GR
Sbjct: 4 WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63
Query: 274 GFSEPFKFTSVVELINYYKHESLSQ 298
+E F S+ EL+NY++ +SLS
Sbjct: 64 HLNEAVSFLSLPELVNYHRAQSLSH 88
>pdb|3S9K|A Chain A, Crystal Structure Of The Itk Sh2 Domain
Length = 118
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGT---NKLIK 265
N+L EWY ISRD L DT +G F+VRD+ T G YT+++ N IK
Sbjct: 4 NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIK 62
Query: 266 IFHRN------GRYGFSEPFKFTSVVELINYYKHESLSQYN-STLDTRLLYPVS 312
+H RY +E + F S+ LI Y+ QYN L TRL YPV
Sbjct: 63 HYHIKETNDSPKRYYVAEKYVFDSIPLLIQYH------QYNGGGLVTRLRYPVC 110
>pdb|2K79|B Chain B, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|B Chain B, Ensemble Structures Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 110
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGT---NKLI 264
+N+L EWY ISRD L DT +G F+VRD+ T G YT+++ N I
Sbjct: 2 SNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCI 60
Query: 265 KIFHRN------GRYGFSEPFKFTSVVELINYYKHESLSQYN-STLDTRLLYPVS 312
K +H RY +E + F S+ LI Y+ QYN L TRL YPV
Sbjct: 61 KHYHIKETNDSPKRYYVAEKYVFDSIPLLIQYH------QYNGGGLVTRLRYPVC 109
>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, Minimized Average Structure
pdb|1AOU|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, 22 Structures
Length = 106
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 13/108 (12%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLR-----KGGTNKL 263
S++ EWY+G + R D +L + GTFL+R++ T G Y+L++R KG K
Sbjct: 1 SIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKH 60
Query: 264 IKIFH-RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
KI NG Y + +F ++ +L+ +Y S+ + L +RL+ P
Sbjct: 61 YKIRKLDNGGYYITTRAQFETLQQLVQHY-----SERAAGLSSRLVVP 103
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 417 GEKTWLVRMSRAQAE-ALLS-GRPDGTFLIRPS--TTGQYALSI-----VCSGAPKHCLV 467
E+ + ++ R AE LLS G P GTFLIR S T G Y+LSI + KH +
Sbjct: 4 AEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKI 63
Query: 468 YETERGFGFAEPFNIYPSLGALVLHYA 494
+ + G + + +L LV HY+
Sbjct: 64 RKLDNGGYYITTRAQFETLQQLVQHYS 90
>pdb|1LUI|A Chain A, Nmr Structures Of Itk Sh2 Domain, Pro287cis Isoform,
Ensemble Of 20 Low Energy Structures
pdb|1LUK|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287cis, Energy
Minimized Average Structure
pdb|1LUM|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287trans, 20 Low
Energy Structures
pdb|1LUN|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287trans, Energy
Minimized Average Structure
Length = 110
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGT---NKLIK 265
N+L EWY ISRD L DT +G F+VRD+ T G YT+++ N IK
Sbjct: 2 NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIK 60
Query: 266 IFHRN------GRYGFSEPFKFTSVVELINYYKHESLSQYN-STLDTRLLYPVS 312
+H RY +E + F S+ LI Y+ QYN L TRL YPV
Sbjct: 61 HYHIKETNDSPKRYYVAEKYVFDSIPLLIQYH------QYNGGGLVTRLRYPVC 108
>pdb|2ETZ|A Chain A, The Nmr Minimized Average Structure Of The Itk Sh2 Domain
Bound To A Phosphopeptide
pdb|2EU0|A Chain A, The Nmr Ensemble Structure Of The Itk Sh2 Domain Bound To
A Phosphopeptide
Length = 109
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGT---NKLIK 265
N+L EWY ISRD L DT +G F+VRD+ T G YT+++ N IK
Sbjct: 2 NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIK 60
Query: 266 IFHRN------GRYGFSEPFKFTSVVELINYYKHESLSQYN-STLDTRLLYPVS 312
+H RY +E + F S+ LI Y+ QYN L TRL YPV
Sbjct: 61 HYHIKETNDSPKRYYVAEKYVFDSIPLLIQYH------QYNGGGLVTRLRYPVC 108
>pdb|2DM0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Tyrosine-
Protein Kinase Txk
Length = 125
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 14/121 (11%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTLRKGG--- 259
SSG + +L EWY +I+R+ L ++ +G F+VRD S G YT+++ G
Sbjct: 5 SSGNKITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRD-SRHLGSYTISVFMGARRS 63
Query: 260 TNKLIKIF----HRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFS 315
T IK + + +G++ +E F S+ ELI Y++H + + L TRL YPV
Sbjct: 64 TEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNA-----AGLMTRLRYPVGLMG 118
Query: 316 S 316
S
Sbjct: 119 S 119
>pdb|2GE9|A Chain A, Solution Structures Of The Sh2 Domain Of Bruton's Tyrosine
Kinase
Length = 125
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 210 NSLRDAEWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
+S+ EWY ++R L + +G F+VRD+S K G+YT+++ T +
Sbjct: 6 DSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSS-KAGKYTVSVFAKSTGDPQGVIR 64
Query: 269 R-------NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+Y +E F+++ ELINY++H S + L +RL YPVS+
Sbjct: 65 HYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNS-----AGLISRLKYPVSQ 111
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+E F+++ ELINY++H S + L +RL YPVS+
Sbjct: 78 LAEKHLFSTIPELINYHQHNS-----AGLISRLKYPVSQ 111
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTL-----RKGGTN 261
+SL EW++ ISR D +L + G+F++RD+ T G Y+L++ R+G T
Sbjct: 58 VDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTV 117
Query: 262 KLIKIFH-RNGRYGFSEPFKFTSVVELINYYK 292
K KI NG + S F+++ EL+++YK
Sbjct: 118 KHYKIRTLDNGGFYISPRSTFSTLQELVDHYK 149
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 405 SGAVASTVDFESGEKTWLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSI--- 456
S VA E+ E W + +SR AE L G G+F+IR S T G Y+LS+
Sbjct: 52 SNYVARVDSLETEE--WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDY 109
Query: 457 --VCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVF 514
KH + + G + P + + +L LV HY ++ ND L L+ P
Sbjct: 110 DPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHY-----KKGNDGLCQKLSVPCM 164
Query: 515 A 515
+
Sbjct: 165 S 165
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 13/109 (11%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLR-----KGGTNK 262
+S++ EWY+G + R D +L + GTFL+R++ T G Y+L++R KG K
Sbjct: 61 DSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVK 120
Query: 263 LIKIFH-RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
KI NG Y + +F ++ +L+ +Y S+ + L +RL+ P
Sbjct: 121 HYKIRKLDNGGYYITTRAQFETLQQLVQHY-----SERAAGLSSRLVVP 164
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 412 VDFESGEKTWLVRMSRAQAE-ALLS-GRPDGTFLIRPS--TTGQYALSI-----VCSGAP 462
VD E+ + ++ R AE LLS G P GTFLIR S T G Y+LSI +
Sbjct: 60 VDSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHV 119
Query: 463 KHCLVYETERGFGFAEPFNIYPSLGALVLHYAANS 497
KH + + + G + + +L LV HY+ +
Sbjct: 120 KHYKIRKLDNGGYYITTRAQFETLQQLVQHYSERA 154
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTL-----RKGGTN 261
+SL EW++ ISR D +L + G+F++RD+ T G Y+L++ R+G T
Sbjct: 64 VDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTV 123
Query: 262 KLIKIFH-RNGRYGFSEPFKFTSVVELINYYK 292
K KI NG + S F+++ EL+++YK
Sbjct: 124 KHYKIRTLDNGGFYISPRSTFSTLQELVDHYK 155
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 405 SGAVASTVDFESGEKTWLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSI--- 456
S VA E+ E W + +SR AE L G G+F+IR S T G Y+LS+
Sbjct: 58 SNYVARVDSLETEE--WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDY 115
Query: 457 --VCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVF 514
KH + + G + P + + +L LV HY ++ ND L L+ P
Sbjct: 116 DPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHY-----KKGNDGLCQKLSVPCM 170
Query: 515 A 515
+
Sbjct: 171 S 171
>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain
Length = 119
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 16/116 (13%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKL 263
SSG NSL WY G +SR L+ +G+FLVR++ + G+ +++LR G
Sbjct: 5 SSGTPVNSLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEG---- 60
Query: 264 IKIFH------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+++H +G+ + +F+++ EL++++ S L T L YP +
Sbjct: 61 -RVYHYRINTTADGKVYVTAESRFSTLAELVHHH-----STVADGLVTTLHYPAPK 110
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
+SR+ AE LLS +G+FL+R S + GQ ++S+ G H + T G + +
Sbjct: 23 VSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVTAESR 82
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ +L LV H++ + D L TTL YP
Sbjct: 83 FSTLAELVHHHSTVA-----DGLVTTLHYPA 108
>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine Fyn-Related
Kinase
Length = 121
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTN 261
SSG E SL+ W++G I R D +L ++ G FL+R++ ++ G+++L++ G
Sbjct: 5 SSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVV 64
Query: 262 KLIKIFHRN-GRYGFSEPFKFTSVVELINYY 291
K +I + G + + F+++ E +NYY
Sbjct: 65 KHYRIRRLDEGGFFLTRRKVFSTLNEFVNYY 95
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 423 VRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
++ + A+ + L S G FLIR S + G ++LS++ G KH + + G F
Sbjct: 23 IKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLTRR 82
Query: 481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYP-----VFAPASG 519
++ +L V +Y S D L L P V P+SG
Sbjct: 83 KVFSTLNEFVNYYTTTS-----DGLCVKLEKPCLKIQVSGPSSG 121
>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc
Gamma-2
Length = 124
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIK 265
P N WY+ +SR + D L DG FL+R + Y +T R G K +
Sbjct: 11 PNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTD-SYAITFRARGKVKHCR 69
Query: 266 IFHRNGR-YGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
I +R+GR + F S+VEL++YY+ +L + RL YPV+
Sbjct: 70 I-NRDGRHFVLGTSAYFESLVELVSYYEKHALYR-----KMRLRYPVT 111
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 419 KTWLV-RMSRAQAEALLSGRP-DGTFLIRP-STTGQYALSIVCSGAPKHCLVYETERGFG 475
K W R+SR +AE +L P DG FLIR T YA++ G KHC + R F
Sbjct: 19 KPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTDSYAITFRARGKVKHCRINRDGRHFV 78
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ SL LV +Y E+H K L YPV
Sbjct: 79 LGTS-AYFESLVELVSYY-----EKHALYRKMRLRYPV 110
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTL-----RKGGTN 261
+SL EW++ ISR D +L + G+F++RD+ T G Y+L++ R+G T
Sbjct: 65 VDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTV 124
Query: 262 KLIKIFH-RNGRYGFSEPFKFTSVVELINYYK 292
K KI NG + S F+++ EL+++YK
Sbjct: 125 KHYKIRTLDNGGFYISPRSTFSTLQELVDHYK 156
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 405 SGAVASTVDFESGEKTWLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSI--- 456
S VA E+ E W + +SR AE L G G+F+IR S T G Y+LS+
Sbjct: 59 SNYVARVDSLETEE--WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDY 116
Query: 457 --VCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVF 514
KH + + G + P + + +L LV HY ND L L+ P
Sbjct: 117 DPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHYKKG-----NDGLCQKLSVPCM 171
Query: 515 A 515
+
Sbjct: 172 S 172
>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk
Homologous Kinase Chk
Length = 97
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
W+ G IS + +L DG FLVR+++ G+Y L + G ++ HR+G
Sbjct: 6 WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 65
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
E F ++++++ +Y S+ + T+L+ P
Sbjct: 66 EAVFFCNLMDMVEHY-----SKDKGAICTKLVRP 94
>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed
Length = 99
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
WY+G ++R L + +G FL+RD+ + +++++L+ G NK K+ + Y
Sbjct: 3 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCI 62
Query: 276 SEPFKFTSVVELINYYK 292
+ KF+++ EL+ +YK
Sbjct: 63 GQR-KFSTMEELVEHYK 78
>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly
Affine Phospho Peptide
pdb|1JYQ|B Chain B, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly
Affine Phospho Peptide
pdb|1JYR|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Phosphorylated Peptide
pdb|1JYU|A Chain A, Xray Structure Of Grb2 Sh2 Domain
Length = 96
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 65 LWVVKFNSLNELVDYHRSTSVSR 87
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 417 GEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER 472
G W ++ RA+AE +LS R DG FLIR S + G ++LS+ +H V
Sbjct: 1 GSMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 60
Query: 473 G--FGFAEPFNIYPSLGALVLHYAANSLEEH 501
G F + FN SL LV ++ + S+ +
Sbjct: 61 GKYFLWVVKFN---SLNELVDYHRSTSVSRN 88
>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound
Protein 2 (Grb2) Sh2 Domain, 24 Structures
Length = 107
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 3 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 62
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 63 LWVVKFNSLNELVDYHRSTSVSR 85
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 420 TWLV-RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG-- 473
+W ++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G
Sbjct: 2 SWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKY 61
Query: 474 FGFAEPFNIYPSLGALVLHYAANSLEEH 501
F + FN SL LV ++ + S+ +
Sbjct: 62 FLWVVKFN---SLNELVDYHRSTSVSRN 86
>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src
Homology Domain-2 Of The Growth Factor Receptor Bound
Protein-2, Nmr, 18 Structures
Length = 112
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 68
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 69 LWVVKFNSLNELVDYHRSTSVSR 91
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 424 RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAE 478
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F +
Sbjct: 13 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 72
Query: 479 PFNIYPSLGALVLHYAANSLEEHND----DLKTTLAYPVFAPA 517
FN SL LV ++ + S+ + D++ P + A
Sbjct: 73 KFN---SLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 112
>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOA|B Chain B, Crystal Structures Of A High-affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|A Chain A, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|B Chain B, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|C Chain C, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|D Chain D, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
Length = 99
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 6 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 65
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 66 LWVVKFNSLNELVDYHRSTSVSR 88
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 424 RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAE 478
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F +
Sbjct: 10 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 69
Query: 479 PFNIYPSLGALVLHYAANSLEEH 501
FN SL LV ++ + S+ +
Sbjct: 70 KFN---SLNELVDYHRSTSVSRN 89
>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A Decaphosphopeptide
From Translocated Intimin Receptor (Tir) Of Epec
Length = 102
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 215 AEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRY 273
+EWY+G+++R L + +G FL+RD+ + +++++L+ G NK K+ + Y
Sbjct: 5 SEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVY 64
Query: 274 GFSEPFKFTSVVELINYYK 292
+ +F ++ EL+ +YK
Sbjct: 65 CIGQR-RFHTMDELVEHYK 82
>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|D Chain D, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|E Chain E, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|F Chain F, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
Length = 112
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 68
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 69 LWVVKFNSLNELVDYHRSTSVSR 91
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 424 RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAE 478
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F +
Sbjct: 13 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 72
Query: 479 PFNIYPSLGALVLHYAANSLEEHND----DLKTTLAYPVFAPA 517
FN SL LV ++ + S+ + D++ P + A
Sbjct: 73 KFN---SLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 112
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 188 ATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK 247
A YV R+ K+S P W+ G I+R+ L G FLVR+++
Sbjct: 62 ANYVQKREGVKAGTKLSLMP---------WFHGKITREQAERLLYPPETGLFLVRESTNY 112
Query: 248 NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRL 307
G+YTL + G + +I + + E F ++++L+ +Y ++ L TRL
Sbjct: 113 PGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTTDA-----DGLCTRL 167
Query: 308 LYP 310
+ P
Sbjct: 168 IKP 170
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+++R QAE LL G FL+R ST G Y L + C G +H + E
Sbjct: 86 KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEV- 144
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
+ +L LV HY ++ D L T L P
Sbjct: 145 YFENLMQLVEHYTTDA-----DGLCTRLIKP 170
>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2 Domain
Complexed With Phosphotyrosyl Heptapeptide
Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2)
pdb|3N7Y|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
pdb|3N7Y|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
pdb|3N7Y|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
Length = 98
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 6 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 65
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 66 LWVVKFNSLNELVDYHRSTSVSR 88
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 424 RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAE 478
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F +
Sbjct: 10 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 69
Query: 479 PFNIYPSLGALVLHYAANSLEEH 501
FN SL LV ++ + S+ +
Sbjct: 70 KFN---SLNELVDYHRSTSVSRN 89
>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications.
pdb|3MXY|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications
Length = 101
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 68
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 69 LWVVKFNSLNELVDYHRSTSVSR 91
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 424 RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAE 478
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F +
Sbjct: 13 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 72
Query: 479 PFNIYPSLGALVLHYAANSLEEH 501
FN SL LV ++ + S+ +
Sbjct: 73 KFN---SLNELVDYHRSTSVSRN 92
>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein
Sh2 Domain Complexed With The Inhibitor
pdb|1QG1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With An Shc-Derived Peptide
Length = 104
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 65 LWVVKFNSLNELVDYHRSTSVSR 87
Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 417 GEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER 472
G W ++ RA+AE +LS R DG FLIR S + G ++LS+ +H V
Sbjct: 1 GSHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 60
Query: 473 G--FGFAEPFNIYPSLGALVLHYAANSLEEH 501
G F + FN SL LV ++ + S+ +
Sbjct: 61 GKYFLWVVKFN---SLNELVDYHRSTSVSRN 88
>pdb|2EKX|A Chain A, Solution Structure Of The Human Bmx Sh2 Domain
Length = 110
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 18/118 (15%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNK 262
SSG ++ L D +W+ G+ISR L +G F+VR+ S++ G YT++L N
Sbjct: 2 SSG--SSGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRN-SSQVGMYTVSLFSKAVND 58
Query: 263 ---LIKIFH-----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
+K +H N Y +E + F S+ +LI+Y++H S + + TRL +PVS
Sbjct: 59 KKGTVKHYHVHTNAENKLY-LAENYCFDSIPKLIHYHQHNS-----AGMITRLRHPVS 110
>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|B Chain B, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|C Chain C, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|D Chain D, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|F Chain F, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|G Chain G, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|H Chain H, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|I Chain I, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|J Chain J, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|K Chain K, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|L Chain L, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
Length = 96
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 4 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 63
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 64 LWVVKFNSLNELVDYHRSTSVSR 86
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 424 RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAE 478
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F +
Sbjct: 8 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 67
Query: 479 PFNIYPSLGALVLHYAANSLEEH 501
FN SL LV ++ + S+ +
Sbjct: 68 KFN---SLNELVDYHRSTSVSRN 87
>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
Length = 117
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 67
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 68 LWVVKFNSLNELVDYHRSTSVSR 90
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 424 RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAE 478
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F +
Sbjct: 12 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 71
Query: 479 PFNIYPSLGALVLHYAANSLEEHND----DLKTTLAYPVFAPA 517
FN SL LV ++ + S+ + D++ P + A
Sbjct: 72 KFN---SLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 111
>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMD|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2 Tripeptide
Mimic
pdb|3IMJ|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2 Tripeptide
Mimic
pdb|3IN7|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IN7|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IN8|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Ptyr-Ile-Asn-Nh2 Tripeptide Mimic
pdb|3KFJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-py-e-n-nh2 Tripeptide Mimic
pdb|3N8M|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
An Acyclic Ligand Having The Sequence Pyvnvp
pdb|3OV1|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
pdb|3S8L|A Chain A, Protein-Ligand Interactions: Thermodynamic Effects
Associated With Increasing Hydrophobic Surface Area
pdb|3S8N|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
pdb|3S8O|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
Length = 117
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 67
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 68 LWVVKFNSLNELVDYHRSTSVSR 90
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 424 RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAE 478
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F +
Sbjct: 12 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 71
Query: 479 PFNIYPSLGALVLHYAANSLEEHND----DLKTTLAYPVFAPA 517
FN SL LV ++ + S+ + D++ P + A
Sbjct: 72 KFN---SLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 111
>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The Grb2
Sh2 Domain
pdb|2H5K|A Chain A, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2H5K|B Chain B, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2HUW|A Chain A, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|2HUW|B Chain B, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|3C7I|A Chain A, X-Ray Crystal Structure Of The Complex Between The
Grb2-Sh2 Domain And A Flexible Ligand, Fptvn
Length = 116
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 67
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 68 LWVVKFNSLNELVDYHRSTSVSR 90
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 424 RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAE 478
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F +
Sbjct: 12 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 71
Query: 479 PFNIYPSLGALVLHYAANSLEEH 501
FN SL LV ++ + S+ +
Sbjct: 72 KFN---SLNELVDYHRSTSVSRN 91
>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With A Phosphotyrosyl Pentapeptide
Length = 98
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 65 LWVVKFNSLNELVDYHRSTSVSR 87
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 424 RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAE 478
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F +
Sbjct: 9 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 68
Query: 479 PFNIYPSLGALVLHYAANSLEEH 501
FN SL LV ++ + S+ +
Sbjct: 69 KFN---SLNELVDYHRSTSVSRN 88
>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
pdb|3UYO|A Chain A, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN COMPLEX
Length = 123
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH- 268
NSL WY G +SR+ L+ +G+FLVR++ + G+ +++LR G +++H
Sbjct: 11 NSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG-----RVYHY 65
Query: 269 -----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+G+ S +F ++ EL++++ S L T L YP +
Sbjct: 66 RINTASDGKLYVSSESRFNTLAELVHHH-----STVADGLITTLHYPAPK 110
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
+SR AE LLS +G+FL+R S + GQ ++S+ G H + G + +
Sbjct: 23 VSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESR 82
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
+ +L LV H++ + D L TTL YP
Sbjct: 83 FNTLAELVHHHSTVA-----DGLITTLHYP 107
>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974)
Length = 123
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 203 MSSGPETNSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTN 261
M S ++ W++G I R + L+ DG FL+R++ + G+++L+++ G
Sbjct: 1 MGSPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDV 60
Query: 262 KLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQ 298
+ K+ F KF S+ EL++Y++ S+S+
Sbjct: 61 QHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSR 97
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 424 RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAE 478
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F +
Sbjct: 19 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 78
Query: 479 PFNIYPSLGALVLHYAANSLEEHND----DLKTTLAYPVFAPA 517
FN SL LV ++ + S+ + D++ P + A
Sbjct: 79 KFN---SLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 118
>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|B Chain B, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|C Chain C, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|D Chain D, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
Length = 114
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 13 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 72
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 73 LWVVKFNSLNELVDYHRSTSVSR 95
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 424 RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAE 478
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F +
Sbjct: 17 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 76
Query: 479 PFNIYPSLGALVLHYAANSLEEH 501
FN SL LV ++ + S+ +
Sbjct: 77 KFN---SLNELVDYHRSTSVSRN 96
>pdb|2OQ1|A Chain A, Tandem Sh2 Domains Of Zap-70 With 19-Mer Zeta1 Peptide
Length = 254
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 80/211 (37%), Gaps = 42/211 (19%)
Query: 113 RHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTF---VLP 169
R +G + +LV D HHF R L A + P L + ++ LP
Sbjct: 39 RSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHC-----GPAELCEFYSRDPDGLP 93
Query: 170 TFSSPPALPPRKLSPRPSA----------TYVHS----RQSSLDVAKMSSGPETNSL--- 212
P P L P+P YV +L+ A +S P+ L
Sbjct: 94 CNLRKPCNRPSGLEPQPGVFDCLRDAXVRDYVRQTWKLEGEALEQAIISQAPQVEKLIAT 153
Query: 213 ---RDAEWYWGDISRDDVNDKLADTA--DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
WY ++R++ KL A DG FL+R + G Y L+L G T ++
Sbjct: 154 TAHERXPWYHSSLTREEAERKLYSGAQTDGKFLLR-PRKEQGTYALSLIYGKT-----VY 207
Query: 268 H------RNGRYGFSEPFKFTSVVELINYYK 292
H + G+Y E KF ++ +L+ Y K
Sbjct: 208 HYLISQDKAGKYCIPEGTKFDTLWQLVEYLK 238
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 217 WYWGDISRDDVND--KLADTADGTFLVRDTSTKNGEYTLTL 255
+++G ISR + + KLA ADG FL+R G Y L+L
Sbjct: 8 FFYGSISRAEAEEHLKLAGXADGLFLLRQCLRSLGGYVLSL 48
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 41/242 (16%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
++S++ EWY+G I+R + L A+ GTFLVR++ T G Y L++ K + +
Sbjct: 142 SDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNV 201
Query: 267 FH------RNGRYGFSEPFKFTSVVELINYY-KH-ESLSQYNSTL------DTRLL---- 308
H +G + + +F S+ +L+ YY KH + L +T+ T+ L
Sbjct: 202 KHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDA 261
Query: 309 YPVSRFSSDVDADIHSNDVD---------------KNPAPGVLRTFSEPFKFTSVVELIN 353
+ + R S ++ + K PG + P F +++
Sbjct: 262 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM----SPEAFLQEAQVMK 317
Query: 354 YYKHESLSQYNSTLDTRLLYPVSRFSSDVD-ADIHSNDVDKYINLKIAFTNLSGAVASTV 412
+HE L Q + + +Y V+ + S D + KY+ L +++ +AS +
Sbjct: 318 KLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLP-QLVDMAAQIASGM 376
Query: 413 DF 414
+
Sbjct: 377 AY 378
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 418 EKTWLVRMSRAQAEALL--SGRPDGTFLIRPS--TTGQYALSI 456
E+ + +++R ++E LL + P GTFL+R S T G Y LS+
Sbjct: 148 EEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSV 190
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLR-----KGGTNK 262
+S++ EWY+G + R D +L + GTFL+R++ T G Y+L++R KG K
Sbjct: 62 DSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDXKGDHVK 121
Query: 263 LIKIFH-RNGRYGFSEPFKFTSVVELINYYKHES 295
KI NG Y + +F ++ +L+ +Y ++
Sbjct: 122 HYKIRKLDNGGYYITTRAQFETLQQLVQHYSEKA 155
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 412 VDFESGEKTWLVRMSRAQAE-ALLS-GRPDGTFLIRPS--TTGQYALSI-----VCSGAP 462
VD E+ + ++ R AE LLS G P GTFLIR S T G Y+LSI
Sbjct: 61 VDSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDXKGDHV 120
Query: 463 KHCLVYETERGFGFAEPFNIYPSLGALVLHYAANS 497
KH + + + G + + +L LV HY+ +
Sbjct: 121 KHYKIRKLDNGGYYITTRAQFETLQQLVQHYSEKA 155
>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With
Cyclo-[n-Alpha-Acetyl-L-Thi
Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl]
(Pkf273-791)
Length = 117
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 14 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 73
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 74 LWVVKFNSLNELVDYHRSTSVSR 96
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 424 RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAE 478
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F +
Sbjct: 18 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 77
Query: 479 PFNIYPSLGALVLHYAANSLEEHND----DLKTTLAYPVFAPA 517
FN SL LV ++ + S+ + D++ P + A
Sbjct: 78 KFN---SLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 117
>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between The
Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain
Length = 98
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 216 EWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYG 274
EWY+G+++R L + +G FL+RD+ + +++++L+ G NK K+ + Y
Sbjct: 2 EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYC 61
Query: 275 FSEPFKFTSVVELINYYK 292
+ +F ++ EL+ +YK
Sbjct: 62 IGQR-RFHTMDELVEHYK 78
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 102/238 (42%), Gaps = 33/238 (13%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
++S++ EWY+G I+R + L A+ GTFLVR++ T G Y L++ K + +
Sbjct: 59 SDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNV 118
Query: 267 FH------RNGRYGFSEPFKFTSVVELINYY-KH-ESLSQYNSTL------DTRLL---- 308
H +G + + +F S+ +L+ YY KH + L +T+ T+ L
Sbjct: 119 KHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDA 178
Query: 309 YPVSRFSSDVDADIHS---NDVDKNPAPGVLRTFSEPFK--------FTSVVELINYYKH 357
+ + R S ++ + +V G R + K F +++ +H
Sbjct: 179 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRH 238
Query: 358 ESLSQYNSTLDTRLLYPVSRFSSDVD-ADIHSNDVDKYINLKIAFTNLSGAVASTVDF 414
E L Q + + +Y V+ + S D + KY+ L +++ +AS + +
Sbjct: 239 EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLP-QLVDMAAQIASGMAY 295
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 416 SGEKTWLVRMSRAQAEALL--SGRPDGTFLIRPS--TTGQYALSI 456
E+ + +++R ++E LL + P GTFL+R S T G Y LS+
Sbjct: 63 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSV 107
>pdb|1M61|A Chain A, Crystal Structure Of The Apo Sh2 Domains Of Zap-70
Length = 259
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 80/211 (37%), Gaps = 42/211 (19%)
Query: 113 RHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTF---VLP 169
R +G + +LV D HHF R L A + P L + ++ LP
Sbjct: 44 RSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCG-----PAELCEFYSRDPDGLP 98
Query: 170 TFSSPPALPPRKLSPRPSA----------TYVHS----RQSSLDVAKMSSGPETNSL--- 212
P P L P+P YV +L+ A +S P+ L
Sbjct: 99 CNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIAT 158
Query: 213 ---RDAEWYWGDISRDDVNDKLADTA--DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
WY ++R++ KL A DG FL+R + G Y L+L G T ++
Sbjct: 159 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLR-PRKEQGTYALSLIYGKT-----VY 212
Query: 268 H------RNGRYGFSEPFKFTSVVELINYYK 292
H + G+Y E KF ++ +L+ Y K
Sbjct: 213 HYLISQDKAGKYCIPEGTKFDTLWQLVEYLK 243
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 94/263 (35%), Gaps = 59/263 (22%)
Query: 217 WYWGDISRDDVND--KLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGRY 273
+++G ISR + + KLA ADG FL+R G Y L+L I + NG Y
Sbjct: 13 FFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTY 72
Query: 274 GFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAP 333
+ EL +Y S+ L L P +R S P P
Sbjct: 73 AIAGGKAHCGPAELCEFY-----SRDPDGLPCNLRKPCNRPSG------------LEPQP 115
Query: 334 GVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDK 393
GV + ++ Y ++ L+ ++ + + H
Sbjct: 116 GVFDCLRD--------AMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHE----- 162
Query: 394 YINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAE-ALLSG-RPDGTFLIRP-STTG 450
++ + + S ++R +AE L SG + DG FL+RP G
Sbjct: 163 ----RMPWYHSS-------------------LTREEAERKLYSGAQTDGKFLLRPRKEQG 199
Query: 451 QYALSIVCSGAPKHCLVYETERG 473
YALS++ H L+ + + G
Sbjct: 200 TYALSLIYGKTVYHYLISQDKAG 222
>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20
Structures
Length = 107
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 212 LRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTL-----RKGGTNKLI 264
+ EW++ ISR D +L + G+F++RD+ T G Y+L++ R+G T K
Sbjct: 1 METEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHY 60
Query: 265 KIFH-RNGRYGFSEPFKFTSVVELINYYK 292
KI NG + S F+++ EL+++YK
Sbjct: 61 KIRTLDNGGFYISPRSTFSTLQELVDHYK 89
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 421 WLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSI-----VCSGAPKHCLVYET 470
W + +SR AE L G G+F+IR S T G Y+LS+ KH +
Sbjct: 6 WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTL 65
Query: 471 ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515
+ G + P + + +L LV HY ++ ND L L+ P +
Sbjct: 66 DNGGFYISPRSTFSTLQELVDHY-----KKGNDGLCQKLSVPCMS 105
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 102/238 (42%), Gaps = 33/238 (13%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
++S++ EWY+G I+R + L A+ GTFLVR++ T G Y L++ K + +
Sbjct: 59 SDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNV 118
Query: 267 FH------RNGRYGFSEPFKFTSVVELINYY-KH-ESLSQYNSTL------DTRLL---- 308
H +G + + +F S+ +L+ YY KH + L +T+ T+ L
Sbjct: 119 KHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDA 178
Query: 309 YPVSRFSSDVDADIHS---NDVDKNPAPGVLRTFSEPFK--------FTSVVELINYYKH 357
+ + R S ++ + +V G R + K F +++ +H
Sbjct: 179 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRH 238
Query: 358 ESLSQYNSTLDTRLLYPVSRFSSDVD-ADIHSNDVDKYINLKIAFTNLSGAVASTVDF 414
E L Q + + +Y V+ + S D + KY+ L +++ +AS + +
Sbjct: 239 EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLP-QLVDMAAQIASGMAY 295
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 416 SGEKTWLVRMSRAQAEALL--SGRPDGTFLIRPS--TTGQYALSI 456
E+ + +++R ++E LL + P GTFL+R S T G Y LS+
Sbjct: 63 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSV 107
>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), C122s Mutant
Length = 106
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
W+ G I+R+ L G FLVR+++ G+YTL + G + +I + +
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSID 69
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
E F ++++L+ +Y ++ L TRL+ P
Sbjct: 70 EEVYFENLMQLVEHYTSDA-----DGLCTRLIKP 98
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+++R QAE LL G FL+R ST G Y L + G +H + E
Sbjct: 14 KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSIDEEV- 72
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
+ +L LV HY +++ D L T L P
Sbjct: 73 YFENLMQLVEHYTSDA-----DGLCTRLIKP 98
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 80/211 (37%), Gaps = 42/211 (19%)
Query: 113 RHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTF---VLP 169
R +G + +LV D HHF R L A + P L + ++ LP
Sbjct: 41 RSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCG-----PAELCEFYSRDPDGLP 95
Query: 170 TFSSPPALPPRKLSPRPSA----------TYVHS----RQSSLDVAKMSSGPETNSL--- 212
P P L P+P YV +L+ A +S P+ L
Sbjct: 96 CNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIAT 155
Query: 213 ---RDAEWYWGDISRDDVNDKLADTA--DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
WY ++R++ KL A DG FL+R + G Y L+L G T ++
Sbjct: 156 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLR-PRKEQGTYALSLIYGKT-----VY 209
Query: 268 H------RNGRYGFSEPFKFTSVVELINYYK 292
H + G+Y E KF ++ +L+ Y K
Sbjct: 210 HYLISQDKAGKYCIPEGTKFDTLWQLVEYLK 240
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 93/262 (35%), Gaps = 59/262 (22%)
Query: 218 YWGDISRDDVND--KLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGRYG 274
++G ISR + + KLA ADG FL+R G Y L+L I + NG Y
Sbjct: 11 FYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYA 70
Query: 275 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPG 334
+ EL +Y S+ L L P +R S P PG
Sbjct: 71 IAGGKAHCGPAELCEFY-----SRDPDGLPCNLRKPCNRPSG------------LEPQPG 113
Query: 335 VLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKY 394
V + ++ Y ++ L+ ++ + + H
Sbjct: 114 VFDCLRD--------AMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHE------ 159
Query: 395 INLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAE-ALLSG-RPDGTFLIRP-STTGQ 451
++ + + S ++R +AE L SG + DG FL+RP G
Sbjct: 160 ---RMPWYHSS-------------------LTREEAERKLYSGAQTDGKFLLRPRKEQGT 197
Query: 452 YALSIVCSGAPKHCLVYETERG 473
YALS++ H L+ + + G
Sbjct: 198 YALSLIYGKTVYHYLISQDKAG 219
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 33/238 (13%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
++S++ EWY+G I+R + L A+ GTFLVR++ T G Y L++ K + +
Sbjct: 59 SDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNV 118
Query: 267 FH------RNGRYGFSEPFKFTSVVELINYY-KH-ESLSQYNSTL------DTRLL---- 308
H +G + + +F S+ +L+ YY KH + L +T+ T+ L
Sbjct: 119 KHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDA 178
Query: 309 YPVSRFSSDVDADIHS---NDVDKNPAPGVLRTFSEPFK--------FTSVVELINYYKH 357
+ + R S ++ + +V G R + K F +++ +H
Sbjct: 179 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRH 238
Query: 358 ESLSQYNSTLDTRLLYPVSRFSSDVD-ADIHSNDVDKYINLKIAFTNLSGAVASTVDF 414
E L Q + + +Y V + S D + KY+ L +++ +AS + +
Sbjct: 239 EKLVQLYAVVSEEPIYIVGEYMSKGSLLDFLKGETGKYLRLP-QLVDMAAQIASGMAY 295
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 416 SGEKTWLVRMSRAQAEALL--SGRPDGTFLIRPS--TTGQYALSI 456
E+ + +++R ++E LL + P GTFL+R S T G Y LS+
Sbjct: 63 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSV 107
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 50 GNASQVAELFHAYSGEIKSYNFSKLEPALLAI-----MLKTYLKSLTEPLIPYVYYEKFV 104
G AS + L H + E + +K EP + I + K Y + L PL+ Y YEKF
Sbjct: 62 GVASNIQRLRHEFDSE-HVPDLTK-EPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFS 119
Query: 105 SLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLA 142
+S + D ++ ++Q P H+ L +LM HL+
Sbjct: 120 DAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLS 157
>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), Oxidized Form
Length = 106
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
W+ G I+R+ L G FLVR+++ G+YTL + G + +I + +
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMYHASKLSID 69
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
E F ++++L+ +Y ++ L TRL+ P
Sbjct: 70 EEVYFENLMQLVEHYTSDA-----DGLCTRLIKP 98
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+++R QAE LL G FL+R ST G Y L + C G +H + E
Sbjct: 14 KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMYHASKLSIDEEV- 72
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
+ +L LV HY +++ D L T L P
Sbjct: 73 YFENLMQLVEHYTSDA-----DGLCTRLIKP 98
>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A
Megakaryocyte-Associated Tyrosine Kinase (Matk) From
Homo Sapiens At 1.50 A Resolution
Length = 98
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
W+ G IS + +L DG FLVR+++ G+Y L + G ++ HR+G
Sbjct: 7 WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 66
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
E F ++ + + +Y S+ + T+L+ P
Sbjct: 67 EAVFFCNLXDXVEHY-----SKDKGAICTKLVRP 95
>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
pdb|2CI9|B Chain B, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
Length = 102
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
WY+G ++R L + +G FL+RD+ + +++++L+ G NK K+ + Y
Sbjct: 7 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCI 66
Query: 276 SEPFKFTSVVELINYYK 292
+ KF+++ EL+ +YK
Sbjct: 67 GQR-KFSTMEELVEHYK 82
>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology 2
Domain Of C-Abl
Length = 109
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 16/108 (14%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH- 268
NSL WY G +SR+ L+ +G+FLVR++ + G+ +++LR G +++H
Sbjct: 4 NSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG-----RVYHY 58
Query: 269 -----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
+G+ S +F ++ EL++++ S L T L YP
Sbjct: 59 RINTASDGKLYVSSESRFNTLAELVHHH-----STVADGLITTLHYPA 101
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
+SR AE LLS +G+FL+R S + GQ ++S+ G H + G + +
Sbjct: 16 VSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESR 75
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGM 520
+ +L LV H++ + D L TTL YP AP G+
Sbjct: 76 FNTLAELVHHHSTVA-----DGLITTLHYP--APKRGI 106
>pdb|1MIL|A Chain A, Transforming Protein
Length = 104
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 417 GEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETE 471
GE + ++SR +AEALL + +G FL+R STT GQY L+ + SG PKH L+ + E
Sbjct: 6 GEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPE 60
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR 269
+ LR W+ G +SR + L +G FLVR+++T G+Y LT + G K + +
Sbjct: 2 SQLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDP 59
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
G ++ +F SV LI+Y+ L ++ + L PV R
Sbjct: 60 EGVVR-TKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVER 102
>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
pdb|1A1A|B Chain B, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
Length = 107
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 210 NSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
+S++ EWY+G I+R + L A+ GTFLVR++ T G Y+L++ K + +
Sbjct: 2 DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNVK 61
Query: 268 H------RNGRYGFSEPFKFTSVVELINYY-KH 293
H +G + + +F S+ +L+ YY KH
Sbjct: 62 HYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKH 94
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 412 VDFESGEKTWLVRMSRAQAEALL--SGRPDGTFLIRPS--TTGQYALSI 456
+D E+ + +++R ++E LL + P GTFL+R S T G Y+LS+
Sbjct: 1 MDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSV 49
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 16/111 (14%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
NSL WY G +SR+ L+ +G+FLVR++ + G+ +++LR G +++H
Sbjct: 138 VNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG-----RVYH 192
Query: 269 ------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+G+ S +F ++ EL++++ S L T L YP +
Sbjct: 193 YRINTASDGKLYVSSESRFNTLAELVHHH-----STVADGLITTLHYPAPK 238
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
+SR AE LLS +G+FL+R S + GQ ++S+ G H + G + +
Sbjct: 151 VSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESR 210
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
+ +L LV H++ + D L TTL YP
Sbjct: 211 FNTLAELVHHHSTVA-----DGLITTLHYP 235
>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein
Interactions
pdb|1HCT|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1HCS|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1A07|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A07|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A08|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Difluoro Phosphotyr-
Glu-(N,N-Dipentyl Amine)
pdb|1A08|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Difluoro Phosphotyr-
Glu-(N,N-Dipentyl Amine)
pdb|1A09|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A09|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A1B|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(N,N-
Dipentyl Amine)
pdb|1A1B|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(N,N-
Dipentyl Amine)
pdb|1A1C|A Chain A, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1C|B Chain B, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1E|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
pdb|1A1E|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
Length = 107
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 210 NSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
+S++ EWY+G I+R + L A+ GTFLVR++ T G Y L++ K + +
Sbjct: 2 DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 61
Query: 268 H------RNGRYGFSEPFKFTSVVELINYY-KH 293
H +G + + +F S+ +L+ YY KH
Sbjct: 62 HYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKH 94
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 412 VDFESGEKTWLVRMSRAQAEALL--SGRPDGTFLIRPS--TTGQYALSI 456
+D E+ + +++R ++E LL + P GTFL+R S T G Y LS+
Sbjct: 1 MDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSV 49
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 16/108 (14%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH- 268
NSL WY G +SR+ L+ +G+FLVR++ + G+ +++LR G +++H
Sbjct: 65 NSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG-----RVYHY 119
Query: 269 -----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
+G+ S +F ++ EL++++ S L T L YP
Sbjct: 120 RINTASDGKLYVSSESRFNTLAELVHHH-----STVADGLITTLHYPA 162
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
+SR AE LLS +G+FL+R S + GQ ++S+ G H + G + +
Sbjct: 77 VSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESR 136
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ +L LV H++ + D L TTL YP
Sbjct: 137 FNTLAELVHHHSTVA-----DGLITTLHYPA 162
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 16/111 (14%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
NSL WY G +SR+ L+ +G+FLVR++ + G+ +++LR G +++H
Sbjct: 99 VNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG-----RVYH 153
Query: 269 ------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+G+ S +F ++ EL++++ S L T L YP +
Sbjct: 154 YRINTASDGKLYVSSESRFNTLAELVHHH-----STVADGLITTLHYPAPK 199
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
+SR AE LLS +G+FL+R S + GQ ++S+ G H + G + +
Sbjct: 112 VSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESR 171
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
+ +L LV H++ + D L TTL YP
Sbjct: 172 FNTLAELVHHHSTVA-----DGLITTLHYP 196
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+ F
Sbjct: 60 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 119
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ EL++Y++ S+S+
Sbjct: 120 LWVVKFNSLNELVDYHRSTSVSR 142
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 424 RMSRAQAEALLSG-RPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAE 478
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F +
Sbjct: 64 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 123
Query: 479 PFNIYPSLGALVLHYAANSLEEHND----DLKTTLAYPVFAPA 517
FN SL LV ++ + S+ + D++ P + A
Sbjct: 124 KFN---SLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 163
>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With Rlnpyaqlwhr
Peptide
pdb|3TKZ|A Chain A, Structure Of The Shp-2 N-Sh2 Domain In A 1:2 Complex With
Rvipyfvplnr Peptide
Length = 109
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 231 LADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINY 290
L DG+FL R + + G++TL++R+ G IKI + Y KF ++ EL+ Y
Sbjct: 24 LTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQY 83
Query: 291 Y--KHESLSQYNSTLDTRLLYPVS 312
Y H L + N + L YP++
Sbjct: 84 YMEHHGQLKEKNGDV-IELKYPLN 106
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 17/99 (17%)
Query: 425 MSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
++ +AE LL R DG+FL RPS + G + LS+ +GA H + T + ++
Sbjct: 14 ITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNT------GDYYD 67
Query: 482 IY-----PSLGALVLHYAAN--SLEEHNDDLKTTLAYPV 513
+Y +L LV +Y + L+E N D+ L YP+
Sbjct: 68 LYGGEKFATLAELVQYYMEHHGQLKEKNGDV-IELKYPL 105
>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase
Length = 124
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 206 GPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTL 255
G +S + WYWG +SR + L G FLVRD+ST G+Y L++
Sbjct: 1 GAMGDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSV 50
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 413 DFESGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLV 467
D E + R+SR +A ALL G+ G FL+R S+T G Y LS+ + H ++
Sbjct: 5 DSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 61
>pdb|2BBU|A Chain A, Solution Structure Of Mouse Socs3 In Complex With A
Phosphopeptide From The Gp130 Receptor
Length = 164
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG 271
L+++ +YW ++ + N L+ GTFL+RD+S + +TL+++ K ++I G
Sbjct: 20 LQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGG 79
Query: 272 RYGF------SEPF-KFTSVVELINYY 291
+ ++P +F V++L+++Y
Sbjct: 80 SFSLQSDPRSTQPVPRFDCVLKLVHHY 106
>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300.
pdb|1O42|A Chain A, Crystal Structure Of Sh2 In Complex With Ru81843.
pdb|1O43|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82129.
pdb|1O44|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85052
pdb|1O45|A Chain A, Crystal Structure Of Sh2 In Complex With Ru84687.
pdb|1O46|A Chain A, Crystal Structure Of Sh2 In Complex With Ru90395.
pdb|1O47|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82209.
pdb|1O48|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85053.
pdb|1O49|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85493.
pdb|1O4A|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82197.
pdb|1O4B|A Chain A, Crystal Structure Of Sh2 In Complex With Ru83876.
pdb|1O4D|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78262.
pdb|1O4E|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78299.
pdb|1O4H|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79072.
pdb|1O4I|A Chain A, Crystal Structure Of Sh2 In Complex With Pas219.
pdb|1O4J|A Chain A, Crystal Structure Of Sh2 In Complex With Iso24.
pdb|1O4K|A Chain A, Crystal Structure Of Sh2 In Complex With Pasbn.
pdb|1O4L|A Chain A, Crystal Structure Of Sh2 In Complex With Fragment2.
pdb|1O4M|A Chain A, Crystal Structure Of Sh2 In Complex With Malonicacid.
pdb|1O4N|A Chain A, Crystal Structure Of Sh2 In Complex With Oxalic Acid.
pdb|1O4O|A Chain A, Crystal Structure Of Sh2 In Complex With Phenylphosphate.
pdb|1O4P|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78791.
pdb|1O4Q|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79256.
pdb|1O4R|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78783
Length = 108
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 211 SLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
S++ EWY+G I+R + L A+ GTFLVR++ T G Y L++ K + + H
Sbjct: 1 SIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKH 60
Query: 269 ------RNGRYGFSEPFKFTSVVELINYY-KH 293
+G + + +F S+ +L+ YY KH
Sbjct: 61 YKIRKLDSGGFYITSRTQFNSLQQLVAYYSKH 92
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 418 EKTWLVRMSRAQAEALL--SGRPDGTFLIRPS--TTGQYALSI 456
E+ + +++R ++E LL + P GTFL+R S T G Y LS+
Sbjct: 5 EEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSV 47
>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma
Regulatory Region And Mechanism Of Autoinhibition And
Activation Based On Key Roles Of Sh2 Domains
Length = 246
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIK 265
P+TN+ EWY ++R L DG FLVR + N Y ++ R G K +
Sbjct: 114 PQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNS-YAISFRAEGKIKHCR 172
Query: 266 IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
+ + G+ +F S+V+LI+YY+ L + +L YP++
Sbjct: 173 V-QQEGQTVMLGNSEFDSLVDLISYYEKHPLYR-----KMKLRYPIN 213
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 404 LSGAVASTVDFESGEKTWL-VRMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCSG 460
LS V T ES K W ++RAQAE +L P DG FL+R YA+S G
Sbjct: 109 LSEPVPQTNAHES--KEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEG 166
Query: 461 APKHCLVYETERG--FGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
KHC V + + G +E + SL L+ +Y E+H K L YP+
Sbjct: 167 KIKHCRVQQEGQTVMLGNSE----FDSLVDLISYY-----EKHPLYRKMKLRYPI 212
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 424 RMSRAQAEALLS------GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFG 475
R R AE LL+ G PDG+FL+R S T G Y LS +G +HC ++ +
Sbjct: 15 RDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGT 74
Query: 476 ---FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
F ++ SL L+ HY L ++ + L+ PV
Sbjct: 75 PKFFLTDNLVFDSLYDLITHYQQVPLR--CNEFEMRLSEPV 113
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 236 DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG----RYGFSEPFKFTSVVELINYY 291
DG+FLVR++ T G+YTL+ + G + +I R ++ ++ F S+ +LI +Y
Sbjct: 36 DGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHY 95
Query: 292 KHESLSQYNSTLDTRLLYPV 311
+ L + + RL PV
Sbjct: 96 QQVPLR--CNEFEMRLSEPV 113
>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|B Chain B, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|C Chain C, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|D Chain D, Structure Of Tandem Sh2 Domains From Plcgamma1
Length = 246
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIK 265
P+TN+ EWY ++R L DG FLVR + N Y ++ R G K +
Sbjct: 114 PQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNS-YAISFRAEGKIKHCR 172
Query: 266 IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
+ + G+ +F S+V+LI+YY+ L + +L YP++
Sbjct: 173 V-QQEGQTVMLGNSEFDSLVDLISYYEKHPLYR-----KMKLRYPIN 213
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 404 LSGAVASTVDFESGEKTWL-VRMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCSG 460
LS V T ES K W ++RAQAE +L P DG FL+R YA+S G
Sbjct: 109 LSEPVPQTNAHES--KEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEG 166
Query: 461 APKHCLVYETERG--FGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
KHC V + + G +E + SL L+ +Y E+H K L YP+
Sbjct: 167 KIKHCRVQQEGQTVMLGNSE----FDSLVDLISYY-----EKHPLYRKMKLRYPI 212
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 424 RMSRAQAEALLS------GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFG 475
R R AE LL+ G PDG+FL+R S T G Y LS +G +HC ++ +
Sbjct: 15 RDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGT 74
Query: 476 ---FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
F ++ SL L+ HY L ++ + L+ PV
Sbjct: 75 PKFFLTDNLVFDSLYDLITHYQQVPLR--CNEFEMRLSEPV 113
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 236 DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG----RYGFSEPFKFTSVVELINYY 291
DG+FLVR++ T G+YTL+ + G + +I R ++ ++ F S+ +LI +Y
Sbjct: 36 DGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHY 95
Query: 292 KHESLSQYNSTLDTRLLYPV 311
+ L + + RL PV
Sbjct: 96 QQVPLR--CNEFEMRLSEPV 113
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 16/111 (14%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
NSL WY G +SR+ L+ +G+FLVR++ + G+ +++LR G +++H
Sbjct: 96 VNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG-----RVYH 150
Query: 269 ------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+G+ S +F ++ EL++++ S L T L YP +
Sbjct: 151 YRINTASDGKLYVSSESRFNTLAELVHHH-----STVADGLITTLHYPAPK 196
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
+SR AE LLS +G+FL+R S + GQ ++S+ G H + G + +
Sbjct: 109 VSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESR 168
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
+ +L LV H++ + D L TTL YP
Sbjct: 169 FNTLAELVHHHSTVA-----DGLITTLHYP 193
>pdb|4F59|A Chain A, Triple Mutant Src Sh2 Domain
pdb|4F5A|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphate Ion
pdb|4F5B|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphotyrosine
Length = 112
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 210 NSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
+S++ EWY+G I+R + L A+ GTFLVR++ T G Y L++ K + +
Sbjct: 4 DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGLNVK 63
Query: 268 H------RNGRYGFSEPFKFTSVVELINYY-KH 293
H +G + + +F S+ +L+ YY KH
Sbjct: 64 HYLIRKLDSGGFYITSRTQFNSLQQLVAYYSKH 96
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 412 VDFESGEKTWLVRMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIV----CSGAP- 462
+D E+ + +++R ++E LL + P GTFL+R S T G YALS+ G
Sbjct: 3 MDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGLNV 62
Query: 463 KHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDL 505
KH L+ + + G + + SL LV +Y+ +H D L
Sbjct: 63 KHYLIRKLDSGGFYITSRTQFNSLQQLVAYYS-----KHADGL 100
>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed
With A Tyrosine-Phosphorylated Peptide From The T-Cell
Receptor, Minimized Average Structure
Length = 107
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 417 GEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETE 471
GE + ++SR +AEALL + +G FL+R STT GQY L+ SG PKH L+ + E
Sbjct: 6 GEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGSQSGQPKHLLLVDPE 60
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG 271
LR W+ G +SR + L +G FLVR+++T G+Y LT + G K + + G
Sbjct: 4 LRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGSQSGQPKHLLLVDPEG 61
Query: 272 RYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
++ +F SV LI+Y+ L ++ + L PV R
Sbjct: 62 VVR-TKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVER 102
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
++S++ EWY+G I+R + L + + GTFLVR++ T G Y L++ K + +
Sbjct: 60 SDSIQAEEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNV 119
Query: 267 FH------RNGRYGFSEPFKFTSVVELINYY-KH 293
H +G + + +F+S+ +L+ YY KH
Sbjct: 120 KHYKIRKLDSGGFYITSRTQFSSLQQLVAYYSKH 153
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 416 SGEKTWLVRMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSI 456
E+ + +++R ++E LL P GTFL+R S T G Y LS+
Sbjct: 64 QAEEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSV 108
>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 226
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIK 265
P+TN+ EWY ++R L DG FLVR + N Y ++ R G K +
Sbjct: 114 PQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNS-YAISFRAEGKIKHCR 172
Query: 266 IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
+ + G+ +F S+V+LI+YY+ L + +L YP++
Sbjct: 173 V-QQEGQTVMLGNSEFDSLVDLISYYEKHPLYR-----KMKLRYPIN 213
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 424 RMSRAQAEALLS------GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFG 475
R R AE LL+ G PDG+FL+R S T G Y LS +G +HC ++ +
Sbjct: 15 RDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGT 74
Query: 476 ---FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
F ++ SL L+ HY L ++ + L+ PV
Sbjct: 75 PKFFLTDNLVFDSLYDLITHYQQVPLR--CNEFEMRLSEPV 113
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 404 LSGAVASTVDFESGEKTWL-VRMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCSG 460
LS V T ES K W ++RAQAE +L P DG FL+R YA+S G
Sbjct: 109 LSEPVPQTNAHES--KEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEG 166
Query: 461 APKHCLVYETERG--FGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
KHC V + + G +E + SL L+ +Y E+H K L YP+
Sbjct: 167 KIKHCRVQQEGQTVMLGNSE----FDSLVDLISYY-----EKHPLYRKMKLRYPI 212
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 236 DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG----RYGFSEPFKFTSVVELINYY 291
DG+FLVR++ T G+YTL+ + G + +I R ++ ++ F S+ +LI +Y
Sbjct: 36 DGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHY 95
Query: 292 KHESLSQYNSTLDTRLLYPV 311
+ L + + RL PV
Sbjct: 96 QQVPLR--CNEFEMRLSEPV 113
>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
pdb|3K2M|B Chain B, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
Length = 112
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 16/109 (14%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-- 268
SL WY G +SR+ L+ +G+FLVR++ + G+ +++LR G +++H
Sbjct: 1 SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG-----RVYHYR 55
Query: 269 ----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+G+ S +F ++ EL++++ S L T L YP +
Sbjct: 56 INTASDGKLYVSSESRFNTLAELVHHH-----STVADGLITTLHYPAPK 99
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
+SR AE LLS +G+FL+R S + GQ ++S+ G H + G + +
Sbjct: 12 VSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESR 71
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
+ +L LV H++ + D L TTL YP
Sbjct: 72 FNTLAELVHHHSTVA-----DGLITTLHYP 96
>pdb|1O4C|A Chain A, Crystal Structure Of Sh2 In Complex With Phosphate.
pdb|1O4F|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79073.
pdb|1O4G|A Chain A, Crystal Structure Of Sh2 In Complex With Dpi59
Length = 108
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 211 SLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
S++ EWY+G I+R + L A+ GTFLVR++ T G Y L++ K + + H
Sbjct: 1 SIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKH 60
Query: 269 ------RNGRYGFSEPFKFTSVVELINYY-KH 293
+G + + +F S+ +L+ YY KH
Sbjct: 61 YKIRKLDSGGFYITSRTQFNSLQQLVAYYSKH 92
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 418 EKTWLVRMSRAQAEALL--SGRPDGTFLIRPS--TTGQYALSI 456
E+ + +++R ++E LL + P GTFL+R S T G Y LS+
Sbjct: 5 EEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYXLSV 47
>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYA|B Chain B, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYB|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYC|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYD|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
Length = 101
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 231 LADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINY 290
L DG+FL R + + G++TL++R+ G IKI + Y KF ++ EL+ Y
Sbjct: 19 LTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQY 78
Query: 291 Y--KHESLSQYNSTLDTRLLYPVS 312
Y H L + N + L YP++
Sbjct: 79 YMEHHGQLKEKNGDV-IELKYPLN 101
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 17/99 (17%)
Query: 425 MSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
++ +AE LL R DG+FL RPS + G + LS+ +GA H + T + ++
Sbjct: 9 ITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNT------GDYYD 62
Query: 482 IY-----PSLGALVLHYAAN--SLEEHNDDLKTTLAYPV 513
+Y +L LV +Y + L+E N D+ L YP+
Sbjct: 63 LYGGEKFATLAELVQYYMEHHGQLKEKNGDV-IELKYPL 100
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLA 142
LK + + L EPL PY ++E+FV + ++ + +LVQ P + ++ L HL
Sbjct: 96 LKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLT 155
Query: 143 RMCA 146
++ A
Sbjct: 156 KIVA 159
>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala,
Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The
Pqpyeeipi Peptide
Length = 103
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH----- 268
EWY+G I+R + L + + GTFLVR++ T G Y L++ K + + H
Sbjct: 3 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKIRK 62
Query: 269 -RNGRYGFSEPFKFTSVVELINYY-KH 293
+G + + +F+S+ +L+ YY KH
Sbjct: 63 LDSGGFYITSRTQFSSLQQLVAYYSKH 89
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 418 EKTWLVRMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCSGAPK-----HCLVY 468
E+ + +++R ++E LL P GTFL+R S T G Y LS+ K H +
Sbjct: 2 EEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKIR 61
Query: 469 ETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDL 505
+ + G + + SL LV +Y+ +H D L
Sbjct: 62 KLDSGGFYITSRTQFSSLQQLVAYYS-----KHADGL 93
>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 109
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTL 255
WYWG +SR + L G FLVRD+ST G+Y L++
Sbjct: 2 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSV 40
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLV 467
R+SR +A ALL G+ G FL+R S+T G Y LS+ + H ++
Sbjct: 6 RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 51
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 78 LLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYL 137
L A++LKT+L+ L EPL+ + Y V L+ + + + L ++Q P ++ LR+L
Sbjct: 108 LPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATL-QVLQTLPEENYQVLRFL 166
Query: 138 MAHLARMCA 146
A L ++ A
Sbjct: 167 TAFLVQISA 175
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTL 255
+S + WYWG +SR + L G FLVRD+ST G+Y L++
Sbjct: 6 DSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSV 51
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 408 VASTVDFESGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHC 465
+A D E + R+SR +A ALL G+ G FL+R S+T G Y LS+ + H
Sbjct: 1 MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHY 60
Query: 466 LV 467
++
Sbjct: 61 II 62
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 78 LLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYL 137
L A++LKT+L+ L EPL+ + Y V L+ + + + L ++Q P ++ LR+L
Sbjct: 77 LPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATL-QVLQTLPEENYQVLRFL 135
Query: 138 MAHLARMCA 146
A L ++ A
Sbjct: 136 TAFLVQISA 144
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 203 MSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGG--T 260
MSS +S R A WY G +SR + +L G FLVRD+ST G+Y L++ + +
Sbjct: 1 MSSARFDSSDRSA-WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVS 59
Query: 261 NKLIK-IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSS 316
+ +I + +R + G E F + L+ +YK L T L+ P R+ S
Sbjct: 60 HYIINSLPNRRFKIGDQE---FDHLPALLEFYKIHYLDT------TTLIEPAPRYPS 107
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 410 STVDFESGEKT--WLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHC 465
S+ F+S +++ ++ +SR +A+ L G+ G FL+R S+T G Y LS+ + H
Sbjct: 2 SSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHY 61
Query: 466 LV 467
++
Sbjct: 62 II 63
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 78 LLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYL 137
L A++LKT+L+ L EPL+ + Y V L+ + + + L ++Q P ++ LR+L
Sbjct: 116 LPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATL-QVLQTLPEENYQVLRFL 174
Query: 138 MAHLARMCA 146
A L ++ A
Sbjct: 175 TAFLVQISA 183
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 203 MSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGG--T 260
MSS +S R A WY G +SR + +L G FLVRD+ST G+Y L++ + +
Sbjct: 1 MSSARFDSSDRSA-WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVS 59
Query: 261 NKLIK-IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSS 316
+ +I + +R + G E F + L+ +YK L T L+ P R+ S
Sbjct: 60 HYIINSLPNRRFKIGDQE---FDHLPALLEFYKIHYLDT------TTLIEPAPRYPS 107
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 410 STVDFESGEKT--WLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHC 465
S+ F+S +++ ++ +SR +A+ L G+ G FL+R S+T G Y LS+ + H
Sbjct: 2 SSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHY 61
Query: 466 LV 467
++
Sbjct: 62 II 63
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 78 LLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYL 137
L A++LKT+L+ L EPL+ + Y V L+ + + + L ++Q P ++ LR+L
Sbjct: 81 LPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATL-QVLQTLPEENYQVLRFL 139
Query: 138 MAHLARMCA 146
A L ++ A
Sbjct: 140 TAFLVQISA 148
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 78 LLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYL 137
L A++LKT+L+ L EPL+ + Y V L+ + + + L ++Q P ++ LR+L
Sbjct: 80 LPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATL-QVLQTLPEENYQVLRFL 138
Query: 138 MAHLARMCA 146
A L ++ A
Sbjct: 139 TAFLVQISA 147
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTL 255
WYWG +SR + L G FLVRD+ST G+Y L++
Sbjct: 15 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSV 53
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 406 GAVASTVDFESGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPK 463
GA+A D E + R+SR +A ALL G+ G FL+R S+T G Y LS+ +
Sbjct: 1 GAMAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVS 60
Query: 464 HCLV 467
H ++
Sbjct: 61 HYII 64
>pdb|2HMH|A Chain A, Crystal Structure Of Socs3 In Complex With Gp130(Ptyr757)
Phosphopeptide
Length = 152
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG 271
L+++ +YW ++ + N L+ GTFL+RD+S + +TL+++ K ++I G
Sbjct: 31 LQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEGG 90
Query: 272 RYGF------SEPF-KFTSVVELINYY 291
+ ++P +F V++L+++Y
Sbjct: 91 SFSLQSDPRSTQPVPRFDXVLKLVHHY 117
>pdb|2EO6|A Chain A, Solution Structure Of The Sh2 Domain From Mouse B-Cell
Linker Protein Blnk
Length = 141
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 20/128 (15%)
Query: 204 SSGPETNSLRDAE-------WYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGE--YTL 253
SSGP ++ D E WY G R + L DG+FL+R +S + + YTL
Sbjct: 5 SSGPFNSTFADQEAELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTL 64
Query: 254 T--LRKGGTNKLIKIFHRNGRYGFSEPFK----FTSVVELINYYKHESL----SQYNSTL 303
K N ++ +Y + F SVVE++N ++H L SQ N+
Sbjct: 65 VAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNTKD 124
Query: 304 DTRLLYPV 311
TRL Y V
Sbjct: 125 STRLKYAV 132
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 231 LADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINY 290
L DG+FL R + + G+ TL++R+ G IKI + Y KF ++ EL+ Y
Sbjct: 21 LTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQY 80
Query: 291 Y--KHESLSQYNSTLDTRLLYPVS 312
Y H L + N + L YP++
Sbjct: 81 YMEHHGQLKEKNGDV-IELKYPLN 103
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 217 WYWGDISRDDVNDKLADTAD-GTFLVRDTSTKNGEYTLTLRKG--------GTNKLIKIF 267
W+ G +S + L + G+FLVR++ + G++ L++R G G +K+ +
Sbjct: 112 WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 171
Query: 268 HRNG--RYGFSEPFKFTSVVELINYYK 292
R +Y +F S+ +L+ +YK
Sbjct: 172 IRCQELKYDVGGGERFDSLTDLVEHYK 198
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 425 MSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AEP 479
++ +AE LL R DG+FL RPS + G LS+ +GA H + T + E
Sbjct: 11 ITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGGEK 70
Query: 480 FNIYPSLGALVLHYAAN--SLEEHNDDLKTTLAYPV 513
F +L LV +Y + L+E N D+ L YP+
Sbjct: 71 F---ATLAELVQYYMEHHGQLKEKNGDV-IELKYPL 102
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTL 255
WYWG +SR + L G FLVRD+ST G+Y L++
Sbjct: 13 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSV 51
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 408 VASTVDFESGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHC 465
+A D E + R+SR +A ALL G+ G FL+R S+T G Y LS+ + H
Sbjct: 1 MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHY 60
Query: 466 LV 467
++
Sbjct: 61 II 62
>pdb|1BKL|A Chain A, Self-Associated Apo Src Sh2 Domain
Length = 113
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH----- 268
EWY+G I+R + L + + GTFLVR++ T G Y L++ K + + H
Sbjct: 5 EWYFGKITRRESESLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 64
Query: 269 -RNGRYGFSEPFKFTSVVELINYY-KH 293
+G + + +F+S+ +L+ YY KH
Sbjct: 65 LDSGGFYITSRTQFSSLQQLVAYYSKH 91
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 416 SGEKTWLVRMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSI 456
S E+ + +++R ++E+LL P GTFL+R S T G Y LS+
Sbjct: 2 SAEEWYFGKITRRESESLLLNPENPRGTFLVRESETTKGAYCLSV 46
>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene
Tyrosine- Protein Kinase Fer From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr3461d
Length = 116
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG 271
L + +WY G I R + + L D FLVR++ K GEY L++ G + I + +
Sbjct: 14 LAEQDWYHGAIPRIEAQELLKKQGD--FLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDN 71
Query: 272 RYGFSEPFKFTSVVELINYY 291
Y F E F+++ +LI+++
Sbjct: 72 MYRF-EGTGFSNIPQLIDHH 90
>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like
Protein
Length = 111
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTL 255
WY G +SR + +L G FLVRD+ST G+Y L++
Sbjct: 21 WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSV 59
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 414 FESGEKT--WLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLV 467
F+S +++ ++ +SR +A+ L G+ G FL+R S+T G Y LS+ + H ++
Sbjct: 13 FDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYII 70
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 208 ETNSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIK 265
+ NSL W++ ++SR D +L + G+FL+R++ + G ++L++R N+
Sbjct: 67 KANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEV 126
Query: 266 IFH------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
+ H NG + S F + EL+ +Y + S L TRL P
Sbjct: 127 VKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 173
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 421 WLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSIV-----CSGAPKHCLVYET 470
W + +SR AE L G G+FLIR S T G ++LS+ KH +
Sbjct: 76 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 135
Query: 471 ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ G + P +P L LV HY S D L T L+ P
Sbjct: 136 DNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 173
>pdb|1IS0|A Chain A, Crystal Structure Of A Complex Of The Src Sh2 Domain With
Conformationally Constrained Peptide Inhibitor
pdb|1IS0|B Chain B, Crystal Structure Of A Complex Of The Src Sh2 Domain With
Conformationally Constrained Peptide Inhibitor
pdb|2JYQ|A Chain A, Nmr Structure Of The Apo V-Src Sh2 Domain
Length = 106
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH----- 268
EWY+G I+R + L + + GTFLVR++ T G Y L++ K + + H
Sbjct: 4 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63
Query: 269 -RNGRYGFSEPFKFTSVVELINYY-KH 293
+G + + +F+S+ +L+ YY KH
Sbjct: 64 LDSGGFYITSRTQFSSLQQLVAYYSKH 90
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 418 EKTWLVRMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSI 456
E+ + +++R ++E LL P GTFL+R S T G Y LS+
Sbjct: 3 EEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSV 45
>pdb|1P13|A Chain A, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
pdb|1P13|B Chain B, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
Length = 102
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH----- 268
EWY+G I+R + L + + GTFLVR++ T G Y L++ K + + H
Sbjct: 3 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 62
Query: 269 -RNGRYGFSEPFKFTSVVELINYY-KH 293
+G + + +F+S+ +L+ YY KH
Sbjct: 63 LDSGGFYITSRTQFSSLQQLVAYYSKH 89
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 418 EKTWLVRMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSI 456
E+ + +++R ++E LL P GTFL+R S T G Y LS+
Sbjct: 2 EEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSV 44
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 208 ETNSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIK 265
+ NSL W++ ++SR D +L + G+FL+R++ + G ++L++R N+
Sbjct: 67 KANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEV 126
Query: 266 IFH------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
+ H NG + S F + EL+ +Y + S L TRL P
Sbjct: 127 VKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 173
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 421 WLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSIV-----CSGAPKHCLVYET 470
W + +SR AE L G G+FLIR S T G ++LS+ KH +
Sbjct: 76 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 135
Query: 471 ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ G + P +P L LV HY S D L T L+ P
Sbjct: 136 DNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 173
>pdb|1SHA|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SHB|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SPR|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|D Chain D, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
Length = 104
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH----- 268
EWY+G I+R + L + + GTFLVR++ T G Y L++ K + + H
Sbjct: 4 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63
Query: 269 -RNGRYGFSEPFKFTSVVELINYY-KH 293
+G + + +F+S+ +L+ YY KH
Sbjct: 64 LDSGGFYITSRTQFSSLQQLVAYYSKH 90
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 418 EKTWLVRMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSI 456
E+ + +++R ++E LL P GTFL+R S T G Y LS+
Sbjct: 3 EEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSV 45
>pdb|1NZL|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZL|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZV|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
pdb|1NZV|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
Length = 103
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH----- 268
EWY+G I+R + L + + GTFLVR++ T G Y L++ K + + H
Sbjct: 3 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 62
Query: 269 -RNGRYGFSEPFKFTSVVELINYY-KH 293
+G + + +F+S+ +L+ YY KH
Sbjct: 63 LDSGGFYITSRTQFSSLQQLVAYYSKH 89
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 418 EKTWLVRMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSI 456
E+ + +++R ++E LL P GTFL+R S T G Y LS+
Sbjct: 2 EEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSV 44
>pdb|1LCJ|A Chain A, Sh2 (Src Homology-2) Domain Of Human P56-Lck Tyrosine
Kinase Complexed With The 11 Residue Phosphotyrosyl
Peptide Epqpyeeipiyl
Length = 109
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
NSL W++ ++SR D +L + G+FL+R++ + G ++L++R N+ +
Sbjct: 3 NSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVK 62
Query: 268 H------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
H NG + S F + EL+ +Y + S L TRL P
Sbjct: 63 HYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 107
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 421 WLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSIV-----CSGAPKHCLVYET 470
W + +SR AE L G G+FLIR S T G ++LS+ KH +
Sbjct: 10 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 69
Query: 471 ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ G + P +P L LV HY S D L T L+ P
Sbjct: 70 DNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 107
>pdb|1BKM|A Chain A, Cocrystal Structure Of D-Amino Acid Substituted
Phosphopeptide Complex
Length = 113
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH----- 268
EWY+G I+R + L + + GTFLVR++ T G Y L++ K + + H
Sbjct: 5 EWYFGKITRRESEALLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 64
Query: 269 -RNGRYGFSEPFKFTSVVELINYY-KH 293
+G + + +F+S+ +L+ YY KH
Sbjct: 65 LDSGGFYITSRTQFSSLQQLVAYYSKH 91
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 416 SGEKTWLVRMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSI 456
S E+ + +++R ++EALL P GTFL+R S T G Y LS+
Sbjct: 2 SAEEWYFGKITRRESEALLLNPENPRGTFLVRESETTKGAYCLSV 46
>pdb|1SKJ|A Chain A, Cocrystal Structure Of Urea-Substituted Phosphopeptide
Complex
Length = 113
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH----- 268
EWY+G I+R + L + + GTFLVR++ T G Y L++ K + + H
Sbjct: 5 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 64
Query: 269 -RNGRYGFSEPFKFTSVVELINYY-KH 293
+G + + +F+S+ +L+ YY KH
Sbjct: 65 LDSGGFYITSRTQFSSLQQLVAYYSKH 91
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 416 SGEKTWLVRMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSI 456
S E+ + +++R ++E LL P GTFL+R S T G Y LS+
Sbjct: 2 SAEEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSV 46
>pdb|1BHF|A Chain A, P56lck Sh2 Domain Inhibitor Complex
pdb|1BHH|A Chain A, Free P56lck Sh2 Domain
Length = 108
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
NSL W++ ++SR D +L + G+FL+R++ + G ++L++R N+ +
Sbjct: 2 NSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVK 61
Query: 268 H------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
H NG + S F + EL+ +Y + S L TRL P
Sbjct: 62 HYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 106
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 421 WLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSIV-----CSGAPKHCLVYET 470
W + +SR AE L G G+FLIR S T G ++LS+ KH +
Sbjct: 9 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 68
Query: 471 ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ G + P +P L LV HY S D L T L+ P
Sbjct: 69 DNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 106
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 208 ETNSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIK 265
+ NSL W++ ++SR D +L + G+FL+R++ + G ++L++R N+
Sbjct: 59 KANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEV 118
Query: 266 IFH------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
+ H NG + S F + EL+ +Y + S L TRL P
Sbjct: 119 VKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPCQ 166
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 421 WLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSIV-----CSGAPKHCLVYET 470
W + +SR AE L G G+FLIR S T G ++LS+ KH +
Sbjct: 68 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 127
Query: 471 ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ G + P +P L LV HY S D L T L+ P
Sbjct: 128 DNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 165
>pdb|1F1W|A Chain A, Src Sh2 Thref1trp Mutant Complexed With The Phosphopeptide
S(Ptr)vnvqn
pdb|1F2F|A Chain A, Src Sh2 Thref1trp Mutant
Length = 104
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRY 273
EWY+G I+R + L + + GTFLVR++ T G Y L++ K + + H R
Sbjct: 4 EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63
Query: 274 GFSEPF------KFTSVVELINYY-KH 293
S F +F+S+ +L+ YY KH
Sbjct: 64 LDSGGFYIWSRTQFSSLQQLVAYYSKH 90
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 418 EKTWLVRMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSI 456
E+ + +++R ++E LL P GTFL+R S T G Y LS+
Sbjct: 3 EEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSV 45
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 40 GLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVY 99
GL + L+ ++S +AEL + S + ++ +LA K YL L P+IP
Sbjct: 40 GLECSTLYRTQSSSNLAELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAV 99
Query: 100 YEKFVSLLS--GSNDRHIGSRLFALVQ--DFPAHHFSALRYLMAHLARM 144
Y + +SL S++ +I L L++ P ++ L+YL+ H ++
Sbjct: 100 YSEMISLAPEVQSSEEYI-QLLKKLIRSPSIPHQYWLTLQYLLKHFFKL 147
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 218 YWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSE 277
+ G ISR+ D+L A+G++L+R++ + G YTL LR G + ++++ +G++ E
Sbjct: 54 FHGMISRE-AADQLLIVAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYY-DGKHFVGE 111
Query: 278 PFKFTSVVELI 288
+F S+ +L+
Sbjct: 112 K-RFESIHDLV 121
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%)
Query: 83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLA 142
LK Y + L PLI Y Y KF+ + L ++ P H LRYLMAHL
Sbjct: 347 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLK 406
Query: 143 RM 144
R+
Sbjct: 407 RV 408
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase
Regulator Associated With Focal Adhesion Kinase
Length = 231
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLA 142
LKTYL+ L PL+ Y + F+ N S + +LV P + L LM HLA
Sbjct: 101 LKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLA 160
Query: 143 RMC 145
++
Sbjct: 161 KVA 163
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLA 142
LK Y + L P+I Y Y KF+ SN + ++ P H+ LRYLM HL
Sbjct: 350 LKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLK 409
Query: 143 RM 144
++
Sbjct: 410 KV 411
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 218 YWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSE 277
+ G ISR+ D+L +G +++R++ + G YTL LR G ++FH +G++ E
Sbjct: 58 FHGIISREQA-DELLGGVEGAYILRESQRQPGCYTLALRFGNQTLNYRLFH-DGKHFVGE 115
Query: 278 PFKFTSVVE-----LINYYKHESLSQYNSTLDTRLLY 309
+F S+ + LI Y ++Y S + T +Y
Sbjct: 116 K-RFESIHDLVTDGLITLYIETKAAEYISKMTTNPIY 151
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W+ D+S D L G+FL R + G+++L++R G I+I + Y
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 276 SEPFKFTSVVELINYYKHES--LSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAP 333
KF ++ EL+ YY + L + T+ L YP++ S + + A
Sbjct: 64 YGGEKFATLTELVEYYTQQQGVLQDRDGTI-IHLKYPLN-CSDPTSERWYHGHMSGGQAE 121
Query: 334 GVLRTFSEPFKF 345
+L+ EP+ F
Sbjct: 122 TLLQAKGEPWTF 133
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 217 WYWGDISRDDVNDKLADTAD-GTFLVRDTSTKNGEYTLTL-----RKGGTNKL----IKI 266
WY G +S L + TFLVR++ ++ G++ L++ + G + L IK+
Sbjct: 110 WYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKV 169
Query: 267 FHRNGRYGFSEPFKFTSVVELINYYKHESLSQ 298
GRY F S+ +L+ ++K + +
Sbjct: 170 MCEGGRYTVGGLETFDSLTDLVEHFKKTGIEE 201
>pdb|2IZV|A Chain A, Crystal Structure Of Socs-4 In Complex With Elongin-B And
Elongin-C At 2.55a Resolution
Length = 187
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 70/156 (44%), Gaps = 10/156 (6%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
P+ + + YWG + + L +GTFL+RD++ ++ ++++ R+ + +I
Sbjct: 26 PDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARI 85
Query: 267 FHRNGRYGFS--EPFKFTS--VVELINYYKHESLSQ-YNSTLDTRLL----YPVSRFSSD 317
N + F +P F S + L+ +YK S + L T L+ + +
Sbjct: 86 EQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIRTFPFSLQHICRT 145
Query: 318 VDADIHSND-VDKNPAPGVLRTFSEPFKFTSVVELI 352
V + + D +D P P ++ + + + + S V ++
Sbjct: 146 VICNCTTYDGIDALPIPSSMKLYLKEYHYKSKVRVL 181
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 421 WLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSI 456
W V M + AEALL G+P+GTFL+R S Y S+
Sbjct: 38 WGV-MDKYAAEALLEGKPEGTFLLRDSAQEDYLFSV 72
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin
Length = 202
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%)
Query: 83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLA 142
LK Y + L PLI Y Y KF+ + L ++ P H LRYLMAHL
Sbjct: 86 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLK 145
Query: 143 RM 144
R+
Sbjct: 146 RV 147
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W+ D+S D L G+FL R + G+++L++R G I+I + Y
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 276 SEPFKFTSVVELINYYKHES--LSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAP 333
KF ++ EL+ YY + L + T+ L YP++ S + + A
Sbjct: 64 YGGEKFATLTELVEYYTQQQGVLQDRDGTI-IHLKYPLN-CSDPTSERWYHGHMSGGQAE 121
Query: 334 GVLRTFSEPFKF 345
+L+ EP+ F
Sbjct: 122 TLLQAKGEPWTF 133
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 217 WYWGDISRDDVNDKLADTAD-GTFLVRDTSTKNGEYTLTL-----RKGGTNKL----IKI 266
WY G +S L + TFLVR++ ++ G++ L++ + G + L IK+
Sbjct: 110 WYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKV 169
Query: 267 FHRNGRYGFSEPFKFTSVVELINYYKHESLSQ 298
GRY F S+ +L+ ++K + +
Sbjct: 170 MCEGGRYTVGGLETFDSLTDLVEHFKKTGIEE 201
>pdb|1R1P|A Chain A, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|B Chain B, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|C Chain C, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|D Chain D, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1Q|A Chain A, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1Q|B Chain B, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|A Chain A, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|C Chain C, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|E Chain E, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|G Chain G, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
Length = 100
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 216 EWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
EW+ +SR + L G F++R + + G++++++R + K+ F
Sbjct: 10 EWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYF 69
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
KF S+ +L++YY+ S+S+
Sbjct: 70 LWTEKFPSLNKLVDYYRTTSISK 92
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAEPF 480
+SR QAE LL G+ G F+IR S + G +++S+ +H V +G F + E F
Sbjct: 16 LSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKF 75
Query: 481 NIYPSLGALVLHYAANSLEEH 501
PSL LV +Y S+ +
Sbjct: 76 ---PSLNKLVDYYRTTSISKQ 93
>pdb|1IJR|A Chain A, Crystal Structure Of Lck Sh2 Complexed With Nonpeptide
Phosphotyrosine Mimetic
Length = 104
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 217 WYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH------ 268
W++ ++SR D +L + G+FL+R++ + G + L++R N+ + H
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRNL 64
Query: 269 RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
NG + S F + EL+ +Y + S L TRL P
Sbjct: 65 DNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPCQ 103
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 15/103 (14%)
Query: 421 WLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSIV-----CSGAPKHCLVYET 470
W + +SR AE L G G+FLIR S T G + LS+ KH +
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRNL 64
Query: 471 ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ G + P +P L LV HY S D L T L+ P
Sbjct: 65 DNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 102
>pdb|1LKL|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Gly (Pyeeg
Peptide)
Length = 104
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 217 WYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH------ 268
W++ ++SR D +L + G+FL+R++ + G ++L++R N+ + H
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 64
Query: 269 RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
NG + S F + EL+ +Y + S L TRL P
Sbjct: 65 DNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPCQ 103
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 421 WLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSIV-----CSGAPKHCLVYET 470
W + +SR AE L G G+FLIR S T G ++LS+ KH +
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 64
Query: 471 ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ G + P +P L LV HY S D L T L+ P
Sbjct: 65 DNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 102
>pdb|1LKK|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Ile (Pyeei
Peptide)
Length = 105
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 217 WYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH------ 268
W++ ++SR D +L + G+FL+R++ + G ++L++R N+ + H
Sbjct: 6 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 65
Query: 269 RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
NG + S F + EL+ +Y + S L TRL P
Sbjct: 66 DNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPCQ 104
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 421 WLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSIV-----CSGAPKHCLVYET 470
W + +SR AE L G G+FLIR S T G ++LS+ KH +
Sbjct: 6 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 65
Query: 471 ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ G + P +P L LV HY S D L T L+ P
Sbjct: 66 DNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 103
>pdb|1BHH|B Chain B, Free P56lck Sh2 Domain
Length = 103
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 217 WYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH------ 268
W++ ++SR D +L + G+FL+R++ + G ++L++R N+ + H
Sbjct: 4 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 63
Query: 269 RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
NG + S F + EL+ +Y + S L TRL P
Sbjct: 64 DNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPCQ 102
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 421 WLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSIV-----CSGAPKHCLVYET 470
W + +SR AE L G G+FLIR S T G ++LS+ KH +
Sbjct: 4 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 63
Query: 471 ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ G + P +P L LV HY S D L T L+ P
Sbjct: 64 DNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 101
>pdb|1FBZ|A Chain A, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
pdb|1FBZ|B Chain B, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
Length = 104
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 217 WYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH------ 268
W++ ++SR D +L + G+FL+R++ + G + L++R N+ + H
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRNL 64
Query: 269 RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
NG + S F + EL+ +Y + S L TRL P
Sbjct: 65 DNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPCQ 103
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 15/103 (14%)
Query: 421 WLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSIV-----CSGAPKHCLVYET 470
W + +SR AE L G G+FLIR S T G + LS+ KH +
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRNL 64
Query: 471 ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ G + P +P L LV HY S D L T L+ P
Sbjct: 65 DNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 102
>pdb|2DX0|A Chain A, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
pdb|2DX0|B Chain B, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
Length = 138
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 236 DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI--FHRNG--RYGFSEPFKFTSVVELINYY 291
DGTFLVR++ T +YTL+ + G + +I NG +Y ++ F S+ LI +Y
Sbjct: 50 DGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHY 109
Query: 292 KHESLSQYNSTLDTRLLYPV 311
+ L + + RL PV
Sbjct: 110 REAHLR--CAEFELRLTDPV 127
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 417 GEKTWLVRM--SRAQAEALL------SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCL 466
GEK W + SR AE LL +G DGTFL+R S T Y LS SG +HC
Sbjct: 21 GEK-WFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCR 79
Query: 467 VYET-ERG-FGFAEPFNI-YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA 517
+ T E G + N+ + S+ AL+ HY L +L+ T P P+
Sbjct: 80 IRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFELRLTDPVPNPNPS 133
>pdb|2YSX|A Chain A, Solution Structure Of The Human Ship Sh2 Domain
Length = 119
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 14/113 (12%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI-------FH 268
W G+I+R + L+ T DG+FLVR + + + Y L + +I F
Sbjct: 12 WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFT 71
Query: 269 RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDAD 321
G S F FT + +LI +YK E N L T L YPV D D
Sbjct: 72 VQASEGVSMRF-FTKLDQLIEFYKKE-----NMGLVTHLQYPVPLEEEDTGDD 118
>pdb|1NRV|A Chain A, Crystal Structure Of The Sh2 Domain Of Grb10
pdb|1NRV|B Chain B, Crystal Structure Of The Sh2 Domain Of Grb10
Length = 105
Score = 36.2 bits (82), Expect = 0.048, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 213 RDAEWYWGDISRDDVND--KLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF--H 268
R W+ G ISR++ + K DG FL+RD+ + + LTL K +I
Sbjct: 3 RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62
Query: 269 RNGRYGFS---EPFKFTSVVELINYYK 292
+G+ FS KF+ +++L+++Y+
Sbjct: 63 DDGQTFFSLDDGNTKFSDLIQLVDFYQ 89
>pdb|3M7F|A Chain A, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 108
Score = 36.2 bits (82), Expect = 0.048, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 213 RDAEWYWGDISRDDVND--KLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF--H 268
R W+ G ISR++ + K DG FL+RD+ + + LTL K +I
Sbjct: 3 RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62
Query: 269 RNGRYGFS---EPFKFTSVVELINYYK 292
+G+ FS KF+ +++L+++Y+
Sbjct: 63 DDGQTFFSLDDGNTKFSDLIQLVDFYQ 89
>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two
Phosphotyrosines In Signaling Mediated By Syk Tyrosine
Kinase
pdb|2PLD|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-gamma1 Complexed With A High Affinity
Binding Peptide
pdb|2PLE|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-Gamma1 Complexed With A High Affinity
Binding Peptide
Length = 105
Score = 35.8 bits (81), Expect = 0.053, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 419 KTWL-VRMSRAQAEALLSGRP-DGTFLIRP-STTGQYALSIVCSGAPKHCLVYETERG-- 473
K W ++RAQAE +L P DG FL+R + YA+S G KHC V + +
Sbjct: 9 KEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQTVM 68
Query: 474 FGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
G +E + SL L+ +Y E+H K L YP+
Sbjct: 69 LGNSE----FDSLVDLISYY-----EKHPLYRKMKLRYPI 99
>pdb|2GSB|A Chain A, Solution Structure Of The Second Sh2 Domain Of Human Ras
Gtpase-Activating Protein 1
Length = 119
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTAD-GTFLVRDTSTKNGEYTLTLRKGGTNK 262
SSG E + W+ G IS+ + + L +FLVR + G+Y+L R +
Sbjct: 5 SSGREEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQ 64
Query: 263 LIKI-------FHRNGRYGFSEPFKFTSVVELINYYKHESLSQ 298
KI F GRY + S+ ++I++Y+ E + +
Sbjct: 65 RFKICPTPNNQFMMGGRY-------YNSIGDIIDHYRKEQIVE 100
>pdb|1BLJ|A Chain A, Nmr Ensemble Of Blk Sh2 Domain, 20 Structures
pdb|1BLK|A Chain A, Nmr Ensemble Of Blk Sh2 Domain Using Chemical Shift
Refinement, 20 Structures
Length = 114
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLR----KGGTNK 262
+L +W++ ISR D +L + G+FL+R++ + G ++L+++ +G K
Sbjct: 6 VETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVK 65
Query: 263 LIKIFH-RNGRYGFSEPFKFTSVVELINYY--KHESLSQ 298
KI NG Y S F ++ L+ +Y K + L Q
Sbjct: 66 HYKIRSLDNGGYYISPRITFPTLQALVQHYSKKGDGLCQ 104
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 406 GAVASTVDFESGEKTWLVRMSRAQAEALLSG--RPDGTFLIRPSTT--GQYALS---IVC 458
G+VA E EK + +SR AE L G+FLIR S + G ++LS I
Sbjct: 1 GSVAPVETLEV-EKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITT 59
Query: 459 SG-APKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
G KH + + G + P +P+L ALV HY+ + D L L P
Sbjct: 60 QGEVVKHYKIRSLDNGGYYISPRITFPTLQALVQHYS-----KKGDGLCQKLTLPC 110
>pdb|1CWD|L Chain L, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide
pdb|1CWE|A Chain A, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide
pdb|1CWE|C Chain C, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide
Length = 98
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 215 AEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH---- 268
W++ ++SR D +L + G+FL+R++ + G ++L++R N+ + H
Sbjct: 1 GSWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIR 60
Query: 269 --RNGRYGFSEPFKFTSVVELINYYKHES 295
NG + S F + EL+ +Y + S
Sbjct: 61 NLDNGGFYISPRITFPGLHELVRHYTNAS 89
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 420 TWLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSIV-----CSGAPKHCLVYE 469
+W + +SR AE L G G+FLIR S T G ++LS+ KH +
Sbjct: 2 SWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 61
Query: 470 TERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLA 510
+ G + P +P L LV HY S D L T L+
Sbjct: 62 LDNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLS 97
>pdb|2AUG|A Chain A, Crystal Structure Of The Grb14 Sh2 Domain
pdb|2AUG|B Chain B, Crystal Structure Of The Grb14 Sh2 Domain
Length = 126
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 19/93 (20%)
Query: 213 RDAEWYWGDISRDDVNDKLADTA--DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI---- 266
R W+ ISRD+ + DG FLVRD+ + + L++ G K +I
Sbjct: 24 RSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVE 83
Query: 267 -----FHR--NGRYGFSEPFKFTSVVELINYYK 292
FH +G +FT +++L+ +Y+
Sbjct: 84 DDGEMFHTLDDGHT------RFTDLIQLVEFYQ 110
>pdb|1WQU|A Chain A, Solution Structure Of The Human Fes Sh2 Domain
pdb|2DCR|A Chain A, Fully Automated Solution Structure Determination Of The
Fes Sh2 Domain
Length = 114
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTL 255
SSG L + WY G I R +V + L + D FLVR++ K EY L++
Sbjct: 5 SSGEVQKPLHEQLWYHGAIPRAEVAELLVHSGD--FLVRESQGKQ-EYVLSV 53
>pdb|2L6K|A Chain A, Solution Structure Of A Nonphosphorylated Peptide
Recognizing Domain
Length = 123
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLR 256
WY +SRD L D G FL+RD+ + G Y L L+
Sbjct: 7 WYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALK 46
>pdb|1X6C|A Chain A, Solution Structures Of The Sh2 Domain Of Human Protein-
Tyrosine Phosphatase Shp-1
pdb|2YU7|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
pdb|2RMX|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
Length = 118
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 217 WYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTL-----RKGGTNKL----IKI 266
WY G +S L A TFLVR++ ++ G++ L++ + G + L IK+
Sbjct: 8 WYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKV 67
Query: 267 FHRNGRYGFSEPFKFTSVVELINYYKHESLSQ 298
GRY F S+ +L+ ++K + +
Sbjct: 68 MCEGGRYTVGGLETFDSLTDLVEHFKKTGIEE 99
>pdb|2KNO|A Chain A, Nmr Solution Structure Of Sh2 Domain Of The Human Tensin
Like C1 Domain Containing Phosphatase (Tenc1)
Length = 131
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLR 256
WY +SRD L D G FL+RD+ + G Y L L+
Sbjct: 22 WYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALK 61
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%)
Query: 82 MLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHL 141
+LK +L++L EPL+ + F+ +++ + + ++ V + P + L +LM HL
Sbjct: 76 LLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHL 135
Query: 142 ARM 144
R+
Sbjct: 136 QRV 138
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 38 DCGLSAANLFE-PGNASQVAELFHAYSGEIKSYNFSKLEPALLAIM--LKTYLKSLTEPL 94
D GL L+ GN + + + + + N +E + A+ LK + L +PL
Sbjct: 50 DTGLCTEGLYRVSGNKTDQDNIQKQFDQD-HNINLVSMEVTVNAVAGALKAFFADLPDPL 108
Query: 95 IPYVYYEKFVSLLSGSNDRHIGSRLFAL---VQDFPAHHFSALRYLMAHLARM 144
IPY + + LL + RL AL V+ F ++ RY++ HL R+
Sbjct: 109 IPYSLHPE---LLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRV 158
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 12 TDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLF-EPGNASQVAELFHAYSGEIKSYN 70
T NV T P +A Y + C L LF + G S++ L G I N
Sbjct: 26 TVNVQRTGQPLPQSIQQAM--RYLRNHC-LDQVGLFRKSGVKSRIQALRQMNEGAIDCVN 82
Query: 71 FSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSL 106
+ +A MLK Y + L EPL+ E F+ +
Sbjct: 83 YEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQI 118
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 38 DCGLSAANLFE-PGNASQVAELFHAYSGEIKSYNFSKLEPALLAIM--LKTYLKSLTEPL 94
D GL L+ GN + + + + + N +E + A+ LK + L +PL
Sbjct: 40 DTGLCTEGLYRVSGNKTDQDNIQKQFDQD-HNINLVSMEVTVNAVAGALKAFFADLPDPL 98
Query: 95 IPYVYYEKFVSLLSGSNDRHIGSRLFAL---VQDFPAHHFSALRYLMAHLARM 144
IPY + + LL + RL AL V+ F ++ RY++ HL R+
Sbjct: 99 IPYSLHPE---LLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRV 148
>pdb|2CS0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Hsh2d
Protein
Length = 119
Score = 32.3 bits (72), Expect = 0.70, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 216 EWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLR 256
EW+ G ISR+D + L G+FL+R + + G YTL+ +
Sbjct: 17 EWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYK 56
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTTG-QYALSIVCSGAPKHCLVYETERG-FGFAEPFNI 482
+SR AE LL +P G+FLIR S + Y LS + H +V + G F
Sbjct: 23 ISREDAENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVA 82
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 519
+ SL ALV + +E + L P+SG
Sbjct: 83 HTSLDALVTFHQQKPIEPRRELLTQPCRQKDSGPSSG 119
>pdb|2CR4|A Chain A, Solution Structure Of The Sh2 Domain Of Human Sh3bp2
Protein
Length = 126
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 232 ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKL--IKIFHRNGRYGFSEPFKFTSVVELIN 289
+ DG + +R++STK+G+ L + +NK+ +IF ++ ++ F SV ++
Sbjct: 40 GEPQDGLYCIRNSSTKSGK-VLVVWDETSNKVRNYRIFEKDSKFYLEGEVLFVSVGSMVE 98
Query: 290 YYKHESLSQYNSTL 303
+Y L + S L
Sbjct: 99 HYHTHVLPSHQSLL 112
>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
Ocrl
Length = 366
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 79 LAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLM 138
+A L +L++L EP+I Y Y++ L + D I + ++ P H + RYLM
Sbjct: 252 VAEALLIFLEALPEPVICYELYQR---CLDSAYDPRICRQ---VISQLPRCHRNVFRYLM 305
Query: 139 AHLARM 144
A L +
Sbjct: 306 AFLREL 311
>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of
The Endocytic Pathway
Length = 342
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 79 LAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLM 138
+A L +L++L EP+I Y Y++ L + D I + ++ P H + RYLM
Sbjct: 228 VAEALLIFLEALPEPVICYELYQR---CLDSAYDPRICRQ---VISQLPRCHRNVFRYLM 281
Query: 139 AHLARM 144
A L +
Sbjct: 282 AFLREL 287
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 40 GLSAANLFE-PGNASQVAELFHAYSGEIKSYNFSKLEPAL----LAIMLKTYLKSLTEPL 94
GLS ++ GN S++ L + + +N E +A +K++ L +PL
Sbjct: 83 GLSTEGIYRVSGNKSEMESLQRQFD---QDHNLDLAEKDFTVNTVAGAMKSFFSELPDPL 139
Query: 95 IPYVYYEKFVSLLSGSNDRHIGSRLFAL---VQDFPAHHFSALRYLMAHLARM 144
+PY V NDR +L AL ++ FP + +Y+++HL ++
Sbjct: 140 VPYNMQIDLVE-AHKINDRE--QKLHALKEVLKKFPKENHEVFKYVISHLNKV 189
>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
Length = 429
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 16/129 (12%)
Query: 230 KLADTADGTFLVRDTSTKNGE----YTLTLRKGGTNKLIKIFHRNG---RYGFSEPFKFT 282
KL+D T + D S +NG ++L G K++++F N + S P +
Sbjct: 14 KLSDFGQETSYIEDNSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSR-- 71
Query: 283 SVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIH--SNDVDKNPAPGVLRTFS 340
+N ++E + + L + +D+ A +H S D +KN P RT
Sbjct: 72 -----LNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHELSRDKEKNTVPWFPRTIQ 126
Query: 341 EPFKFTSVV 349
E +F + +
Sbjct: 127 ELDRFANQI 135
>pdb|2HDV|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDV|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDX|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|C Chain C, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|D Chain D, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|E Chain E, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|F Chain F, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
Length = 111
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 217 WYWGDISRDDVNDKLADTADGT---FLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRY 273
W+ G +SR + + G+ FLVR + T+ GE LT G K +++
Sbjct: 11 WFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQ 70
Query: 274 GFSEPFKFTSVVELINYYK 292
+ F S+ +++ +++
Sbjct: 71 CRVQHLHFQSIFDMLEHFR 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,686,725
Number of Sequences: 62578
Number of extensions: 659868
Number of successful extensions: 1943
Number of sequences better than 100.0: 165
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1576
Number of HSP's gapped (non-prelim): 335
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)