Query psy8552
Match_columns 523
No_of_seqs 375 out of 3822
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 21:47:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4637|consensus 100.0 1.5E-45 3.3E-50 352.4 10.8 306 210-519 18-434 (464)
2 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 1.7E-33 3.8E-38 261.1 16.7 149 17-175 12-163 (200)
3 KOG1264|consensus 100.0 9.3E-33 2E-37 286.4 17.6 196 212-515 531-740 (1267)
4 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 1.8E-32 3.8E-37 255.2 16.6 161 5-175 3-166 (188)
5 cd04372 RhoGAP_chimaerin RhoGA 100.0 1.6E-32 3.5E-37 257.3 16.2 160 6-175 2-165 (194)
6 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 1.8E-32 3.8E-37 256.3 16.1 160 6-175 2-164 (196)
7 cd04407 RhoGAP_myosin_IXB RhoG 100.0 2.5E-32 5.3E-37 253.6 16.2 156 9-175 5-161 (186)
8 cd04406 RhoGAP_myosin_IXA RhoG 100.0 3.4E-32 7.4E-37 252.7 16.7 158 7-175 3-161 (186)
9 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 4.6E-32 1E-36 252.8 17.5 158 7-175 4-162 (193)
10 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 3.4E-32 7.4E-37 255.8 16.5 159 7-175 3-174 (200)
11 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 5.3E-32 1.2E-36 252.3 16.1 159 6-175 2-164 (187)
12 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 6.1E-32 1.3E-36 252.9 16.1 158 6-175 4-166 (195)
13 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 6.5E-32 1.4E-36 250.4 15.4 150 8-165 4-158 (182)
14 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 1.6E-31 3.4E-36 252.3 16.2 161 6-176 2-177 (203)
15 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 2.5E-31 5.3E-36 253.1 15.5 162 4-175 4-166 (220)
16 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 3E-31 6.5E-36 251.3 15.5 160 6-175 2-184 (211)
17 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 7.3E-31 1.6E-35 247.1 16.5 162 6-177 2-172 (207)
18 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 1.1E-30 2.4E-35 242.7 15.6 155 8-174 4-161 (185)
19 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 2.5E-30 5.5E-35 242.1 17.1 157 6-175 3-160 (192)
20 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 4.6E-30 1E-34 241.9 17.6 149 15-175 4-165 (206)
21 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 4.4E-30 9.6E-35 245.7 17.0 151 15-175 27-198 (225)
22 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 5.6E-30 1.2E-34 237.9 17.2 152 14-175 9-163 (184)
23 cd04390 RhoGAP_ARHGAP22_24_25 100.0 3.7E-30 8.1E-35 242.6 16.0 160 5-175 3-170 (199)
24 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 3.9E-30 8.4E-35 245.1 16.2 160 7-176 4-171 (216)
25 cd04377 RhoGAP_myosin_IX RhoGA 100.0 3.8E-30 8.2E-35 239.6 15.7 159 6-175 2-161 (186)
26 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 4.7E-30 1E-34 243.9 16.6 149 19-175 26-179 (213)
27 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 7.1E-30 1.5E-34 241.3 16.1 162 4-175 4-168 (203)
28 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 1.2E-29 2.7E-34 238.0 16.4 160 6-175 2-167 (192)
29 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 1.4E-29 3.1E-34 237.6 16.0 148 18-175 26-180 (203)
30 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 3.7E-29 8.1E-34 235.1 17.7 159 7-175 4-167 (196)
31 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 2.8E-29 6E-34 236.5 15.3 148 15-175 15-163 (202)
32 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 5.3E-29 1.2E-33 232.7 16.0 159 6-175 4-167 (189)
33 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 5E-29 1.1E-33 233.0 15.7 143 17-166 19-167 (190)
34 KOG0790|consensus 100.0 1.2E-28 2.7E-33 242.0 15.5 200 214-515 3-217 (600)
35 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 2.4E-28 5.1E-33 230.6 15.8 141 23-175 12-167 (208)
36 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 3.4E-28 7.3E-33 228.6 16.6 160 4-175 5-168 (195)
37 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 2.9E-28 6.3E-33 230.7 15.8 164 6-175 2-181 (212)
38 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 9.4E-28 2E-32 223.1 14.1 145 17-175 18-163 (187)
39 cd04380 RhoGAP_OCRL1 RhoGAP_OC 99.9 3.5E-26 7.7E-31 218.4 15.1 144 15-175 45-194 (220)
40 smart00324 RhoGAP GTPase-activ 99.9 9.6E-26 2.1E-30 208.6 16.3 147 19-175 2-150 (174)
41 KOG4269|consensus 99.9 3.3E-25 7.2E-30 233.1 13.4 152 14-175 913-1069(1112)
42 KOG2200|consensus 99.9 6.8E-25 1.5E-29 222.8 15.1 153 6-163 302-457 (674)
43 cd00159 RhoGAP RhoGAP: GTPase- 99.9 1.4E-24 3.1E-29 199.6 15.9 144 21-174 1-145 (169)
44 PF00620 RhoGAP: RhoGAP domain 99.9 8E-25 1.7E-29 197.6 10.8 138 21-165 1-140 (151)
45 KOG4270|consensus 99.9 1.8E-24 3.8E-29 225.9 13.2 156 9-174 154-311 (577)
46 KOG4407|consensus 99.9 1E-23 2.2E-28 227.6 13.7 143 16-165 1170-1318(1973)
47 KOG3564|consensus 99.9 2.9E-23 6.4E-28 205.7 14.0 156 9-175 351-507 (604)
48 KOG1450|consensus 99.9 4E-23 8.7E-28 216.2 12.7 157 7-174 459-619 (650)
49 KOG2710|consensus 99.9 7.4E-23 1.6E-27 205.9 12.9 130 17-151 91-225 (412)
50 KOG4278|consensus 99.9 2.9E-23 6.3E-28 212.6 8.7 168 207-382 144-328 (1157)
51 KOG1117|consensus 99.9 2.5E-22 5.4E-27 210.5 12.0 151 7-165 715-868 (1186)
52 KOG2996|consensus 99.9 7.3E-22 1.6E-26 199.6 8.4 178 209-411 679-861 (865)
53 KOG1451|consensus 99.8 1.4E-20 3.1E-25 190.6 15.7 131 21-156 389-525 (812)
54 KOG4406|consensus 99.8 7.6E-21 1.6E-25 186.9 10.9 160 5-173 254-421 (467)
55 KOG1453|consensus 99.8 1.6E-20 3.4E-25 211.6 13.3 159 7-175 605-770 (918)
56 cd00173 SH2 Src homology 2 dom 99.8 4.7E-20 1E-24 152.5 12.0 93 216-311 1-94 (94)
57 smart00252 SH2 Src homology 2 99.8 1.2E-19 2.6E-24 146.8 11.4 82 215-296 1-83 (84)
58 KOG0197|consensus 99.8 5.4E-20 1.2E-24 188.1 9.0 168 207-382 73-266 (468)
59 cd00173 SH2 Src homology 2 dom 99.8 6.4E-19 1.4E-23 145.7 11.9 91 420-513 1-94 (94)
60 PF00017 SH2: SH2 domain; Int 99.8 3.2E-19 6.9E-24 141.8 9.3 75 217-291 1-77 (77)
61 KOG4792|consensus 99.8 1.3E-18 2.8E-23 157.5 9.4 164 209-410 5-178 (293)
62 KOG4278|consensus 99.7 1.9E-18 4E-23 177.7 8.2 124 385-516 121-247 (1157)
63 KOG0197|consensus 99.7 3.8E-18 8.3E-23 174.6 10.1 132 380-516 37-186 (468)
64 KOG0194|consensus 99.7 4.6E-18 9.9E-23 176.4 9.6 153 210-382 44-226 (474)
65 smart00252 SH2 Src homology 2 99.7 1.8E-17 4E-22 133.9 10.9 78 419-497 1-82 (84)
66 KOG4226|consensus 99.7 1.5E-17 3.2E-22 154.5 10.5 136 377-515 213-379 (379)
67 PF00017 SH2: SH2 domain; Int 99.7 3.4E-17 7.4E-22 130.1 8.9 73 421-493 1-77 (77)
68 KOG2996|consensus 99.7 3.3E-17 7.2E-22 166.1 6.3 139 377-516 632-784 (865)
69 KOG0790|consensus 99.7 1.9E-16 4.1E-21 156.7 9.4 100 213-313 108-217 (600)
70 KOG1452|consensus 99.7 1.3E-16 2.7E-21 151.5 7.7 153 8-167 188-347 (442)
71 KOG4226|consensus 99.7 6.6E-16 1.4E-20 143.6 11.8 101 211-312 277-378 (379)
72 KOG4271|consensus 99.6 3.5E-16 7.6E-21 166.5 7.0 152 4-164 917-1071(1100)
73 KOG4637|consensus 99.6 2.7E-15 5.8E-20 145.1 6.8 99 416-515 20-121 (464)
74 KOG1264|consensus 99.5 6.5E-15 1.4E-19 154.6 7.3 100 207-313 640-740 (1267)
75 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.5 2.2E-13 4.9E-18 125.9 11.8 138 20-166 6-159 (198)
76 KOG4792|consensus 99.3 2.5E-12 5.4E-17 117.0 8.1 94 416-517 8-112 (293)
77 cd04405 RhoGAP_BRCC3-like RhoG 99.3 2.1E-11 4.5E-16 113.7 10.8 146 14-165 31-199 (235)
78 KOG4724|consensus 99.3 6.4E-12 1.4E-16 130.5 7.9 140 19-167 95-235 (741)
79 KOG4370|consensus 99.3 2E-11 4.4E-16 120.6 10.6 138 14-156 65-243 (514)
80 KOG3601|consensus 99.2 3.7E-12 8E-17 115.4 0.9 85 212-297 55-140 (222)
81 KOG3601|consensus 99.1 1.2E-11 2.7E-16 112.0 0.1 116 377-500 22-141 (222)
82 KOG1930|consensus 99.0 3.7E-10 8E-15 111.7 6.5 97 415-516 208-324 (483)
83 KOG0194|consensus 98.9 3E-09 6.4E-14 111.1 10.3 96 416-516 46-150 (474)
84 KOG1930|consensus 98.9 2.2E-09 4.9E-14 106.2 6.7 94 216-314 213-324 (483)
85 PF14633 SH2_2: SH2 domain; PD 98.8 1.3E-07 2.9E-12 89.0 13.4 79 213-293 36-123 (220)
86 KOG3565|consensus 98.7 2E-08 4.4E-13 108.6 8.4 154 14-178 212-369 (640)
87 KOG3697|consensus 98.3 5.8E-07 1.3E-11 85.2 5.3 100 212-314 198-344 (345)
88 KOG1856|consensus 98.1 2.6E-05 5.5E-10 86.8 12.9 170 211-497 1104-1288(1299)
89 KOG3751|consensus 98.1 1.8E-06 4E-11 88.3 3.1 98 211-313 515-619 (622)
90 KOG3697|consensus 98.0 1.4E-05 2.9E-10 76.1 6.0 96 417-516 199-344 (345)
91 KOG3751|consensus 97.9 3.8E-06 8.2E-11 86.1 1.6 95 415-514 515-618 (622)
92 PF08101 DUF1708: Domain of un 97.9 6E-05 1.3E-09 78.0 10.1 140 19-167 7-162 (420)
93 PF14633 SH2_2: SH2 domain; PD 97.2 0.0016 3.4E-08 61.7 8.2 76 419-495 38-123 (220)
94 KOG4566|consensus 97.1 0.00071 1.5E-08 65.2 5.8 88 208-295 45-139 (258)
95 KOG4724|consensus 96.8 0.0009 2E-08 70.9 3.8 144 8-157 420-576 (741)
96 KOG4566|consensus 95.3 0.031 6.8E-07 54.0 5.7 82 416-497 49-139 (258)
97 KOG1856|consensus 93.2 0.17 3.6E-06 57.6 6.2 80 417-496 1106-1194(1299)
98 KOG1453|consensus 91.4 0.095 2.1E-06 60.5 1.7 132 16-152 476-644 (918)
99 PF00018 SH3_1: SH3 domain; I 87.5 0.084 1.8E-06 37.2 -1.6 30 377-406 19-48 (48)
100 PF14604 SH3_9: Variant SH3 do 85.2 0.11 2.5E-06 36.8 -1.9 31 377-409 18-48 (49)
101 KOG4257|consensus 84.6 0.52 1.1E-05 50.9 1.8 54 340-395 399-471 (974)
102 KOG3508|consensus 82.8 0.035 7.7E-07 62.0 -8.0 54 215-268 81-136 (932)
103 KOG1449|consensus 79.5 0.61 1.3E-05 49.4 0.1 118 9-146 214-337 (670)
104 PF02762 Cbl_N3: CBL proto-onc 77.5 12 0.00027 28.9 6.5 44 215-258 2-47 (86)
105 KOG4271|consensus 72.4 3.2 6.9E-05 46.7 3.2 142 18-165 369-530 (1100)
106 KOG1026|consensus 69.7 1.8 4E-05 48.2 0.7 52 329-382 480-554 (774)
107 KOG3667|consensus 68.4 7.2 0.00016 42.7 4.8 85 211-295 559-646 (682)
108 PF07653 SH3_2: Variant SH3 do 63.3 0.87 1.9E-05 33.0 -2.3 32 377-410 21-53 (55)
109 cd00174 SH3 Src homology 3 dom 58.0 2.5 5.4E-05 29.6 -0.7 33 377-410 21-53 (54)
110 KOG2199|consensus 56.1 3.9 8.5E-05 41.6 0.1 32 377-410 237-268 (462)
111 PF03471 CorC_HlyC: Transporte 55.8 11 0.00024 29.5 2.7 44 44-92 5-48 (81)
112 PF07935 SSV1_ORF_D-335: ORF D 48.9 57 0.0012 25.0 5.2 44 440-497 6-49 (72)
113 KOG0196|consensus 48.9 4.2 9.1E-05 45.3 -1.0 41 340-382 639-695 (996)
114 smart00326 SH3 Src homology 3 47.6 3.2 6.9E-05 29.4 -1.6 32 377-409 24-55 (58)
115 smart00557 IG_FLMN Filamin-typ 45.6 22 0.00048 28.6 3.0 30 231-260 50-79 (93)
116 KOG0515|consensus 44.7 9.9 0.00022 40.3 1.0 26 384-411 715-740 (752)
117 KOG1029|consensus 43.2 13 0.00027 41.3 1.5 33 377-411 1075-1107(1118)
118 KOG1094|consensus 41.7 5.3 0.00011 43.2 -1.6 41 340-382 548-600 (807)
119 PF02762 Cbl_N3: CBL proto-onc 38.8 1.4E+02 0.0029 23.4 6.0 40 420-459 3-47 (86)
120 cd08048 TAF11 TATA Binding Pro 35.8 80 0.0017 25.2 4.7 55 46-104 11-82 (85)
121 KOG0162|consensus 33.7 21 0.00045 39.5 1.3 32 377-410 1073-1104(1106)
122 KOG4370|consensus 33.2 74 0.0016 33.1 5.0 37 72-108 116-152 (514)
123 KOG3812|consensus 29.1 28 0.0006 35.0 1.2 23 386-408 96-119 (475)
124 KOG1118|consensus 27.3 25 0.00054 34.8 0.6 33 377-411 328-360 (366)
125 KOG1785|consensus 26.7 76 0.0016 32.6 3.8 44 215-258 256-301 (563)
126 PF00630 Filamin: Filamin/ABP2 26.5 58 0.0013 26.2 2.6 28 233-260 66-93 (101)
127 COG4835 Uncharacterized protei 26.3 51 0.0011 27.4 2.1 43 46-90 63-106 (124)
128 PF12491 ApoB100_C: Apolipopro 23.7 2.8E+02 0.0061 20.3 5.1 24 123-146 27-51 (58)
129 PF03540 TFIID_30kDa: Transcri 20.7 1.7E+02 0.0037 20.9 3.6 31 93-123 1-31 (51)
No 1
>KOG4637|consensus
Probab=100.00 E-value=1.5e-45 Score=352.44 Aligned_cols=306 Identities=48% Similarity=0.804 Sum_probs=243.6
Q ss_pred CCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHH
Q psy8552 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELIN 289 (523)
Q Consensus 210 ~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~ 289 (523)
.++...+||||.|||+++.+.|.++|||+||||+.++.+|+|+||++.+|.++-++|.+.+|+|.|.+.-.|+|+.+||+
T Consensus 18 ~~L~~a~WYWgdisReev~~~L~d~PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgKyGF~d~ltf~SVVelIn 97 (464)
T KOG4637|consen 18 DELQDAEWYWGDISREEVNKKLRDQPDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGKYGFSDPLTFNSVVELIN 97 (464)
T ss_pred hhhhhccccccccCHHHHHHHhcCCCCCcEEeeccccCCCceEEEEecCCccceeeeEEecCccCCCCchhhHHHHHHHH
Confidence 44888999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHhhCCcccCCCCcceeeccccccCCCCcccccCCC-CcCC--CC-------Cccccccc---ccCccc-----------
Q psy8552 290 YYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSN-DVDK--NP-------APGVLRTF---SEPFKF----------- 345 (523)
Q Consensus 290 ~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~-~~~~--~~-------l~~~~~~~---~~~~~~----------- 345 (523)
||+..++..+|+.|.++|.+|+.+.+.++.. .++ ++.. |. +.....+| .+.|+.
T Consensus 98 ~yr~~SL~~yN~~LDvrLlyPVs~~r~dq~~--kp~~~~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~ 175 (464)
T KOG4637|consen 98 HYRNESLAQYNPKLDVRLLYPVSRYRQDQNV--KPDFNINAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTA 175 (464)
T ss_pred HHhhhHHHhhCcccceeeechHHHhhhcccc--CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888765 233 2221 11 22233333 233333
Q ss_pred -hhHHHHHHhhc------------------------------------------------cc---chhh------hh---
Q psy8552 346 -TSVVELINYYK------------------------------------------------HE---SLSQ------YN--- 364 (523)
Q Consensus 346 -~~~~~avk~~~------------------------------------------------~~---~l~~------~~--- 364 (523)
++|...||.++ ++ .+++ ++
T Consensus 176 ~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~~q~~~~ 255 (464)
T KOG4637|consen 176 IEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGNSEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKALIQALRS 255 (464)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCchHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 23333344333 00 1111 11
Q ss_pred ------hh---hchhcccccccccccc--ccccccchhHHHhhhh------hc--cccccccc-----CCCCCCCCCCCc
Q psy8552 365 ------ST---LDTRLLYPVSRFSSDV--DADIHSNDVDKYINLK------IA--FTNLSGAV-----ASTVDFESGEKT 420 (523)
Q Consensus 365 ------~e---~~ar~m~~l~~~~~~l--~k~~~~~w~~~r~~~~------~~--~g~~p~~~-----~~~~~~~~~~~~ 420 (523)
.| +| +.|..+.|+++++ +++++.+|.......+ .. ....++++ ....| ......
T Consensus 256 ~~enr~~e~m~l~-k~~nslkp~l~~lr~~~d~y~~~l~~~~~~~k~l~~~l~~~~~~t~~qy~l~et~~~~p-h~~e~~ 333 (464)
T KOG4637|consen 256 NSENRLCELMELD-KAMNSLKPDLIQLRKIRDQYLVWLMIKGVRQKVLNLWLGMENEWTDAQYLLCETDENLP-HNDEKT 333 (464)
T ss_pred hhhhhhHHHHHHH-HHHhhcCchHHHHHHHHHHHHHHHHhcCccHHHHHHHHhhhhcCCHHHHHHhcccccCc-chhhhH
Confidence 12 44 6677778888888 6888888887332222 11 12333333 33445 556668
Q ss_pred ccc-cCCHHHHHHHhcCCCCCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCc
Q psy8552 421 WLV-RMSRAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSL 498 (523)
Q Consensus 421 W~~-~isr~~Ae~~L~~~~~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l 498 (523)
|+. .+.|+.||.+|++++||+||||.|. .|+|+|||..++.|+|+.|..+..||.|......+.||.+||.||+++||
T Consensus 334 w~~~~a~r~kAe~llrg~~dGtFLIR~ss~~g~yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~SL 413 (464)
T KOG4637|consen 334 WRVRDANRDKAEELLRGKPDGTFLIRESSKGGCYALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHTSL 413 (464)
T ss_pred hHHhhhhHHHHHHHhcCCCCCeEEEeeccCCCceEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhhhH
Confidence 999 9999999999999999999999988 99999999999999999999999999999888889999999999999999
Q ss_pred cccCCccceeecccccCCCCC
Q psy8552 499 EEHNDDLKTTLAYPVFAPASG 519 (523)
Q Consensus 499 ~~~~~~l~~~L~~pv~~~~~~ 519 (523)
.+|+|.+.++|++||..+.++
T Consensus 414 e~HnDal~ttLr~Pv~~~~~~ 434 (464)
T KOG4637|consen 414 EQHNDALTTTLRYPVFAQVTS 434 (464)
T ss_pred HhhccccccccccceecccCC
Confidence 999999999999999887554
No 2
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=1.7e-33 Score=261.07 Aligned_cols=149 Identities=24% Similarity=0.374 Sum_probs=135.4
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCCCccceEEecCChhHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC
Q psy8552 17 STTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIP 96 (523)
Q Consensus 17 ~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~LpePli~ 96 (523)
.+.+|.+|.+||++|+++ ||++|||||++|+..+.++++.||++...++++.+|+|+||++||.|||+|||||||
T Consensus 12 ~~~~P~iv~~ci~~IE~~-----GL~~eGIYRvsgs~~~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPePLip 86 (200)
T cd04388 12 PDVAPPLLIKLVEAIEKK-----GLESSTLYRTQSSSSLTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNPVIP 86 (200)
T ss_pred CCCCCHHHHHHHHHHHHh-----CCCCCceeeCCCccHHHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCccCC
Confidence 488999999999999999 999999999997767899999999976667888999999999999999999999999
Q ss_pred hhhHHHHHHHhc-CCChHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccccCCC
Q psy8552 97 YVYYEKFVSLLS-GSNDRHIGSRLFALVQ--DFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSS 173 (523)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~--~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~~~~ 173 (523)
+++|++|+++++ ..+.++++++++.+++ .||..|+.||+|||.||.+|++++..|+|+.. ++|.+|| |++++
T Consensus 87 ~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~--NLAiVFg---PtL~r 161 (200)
T cd04388 87 APVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSAR--ALAEIFS---PLLFR 161 (200)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHH--HhHHHhh---hhhcC
Confidence 999999999886 6678889999999998 89999999999999999999999999888766 8888886 66665
Q ss_pred CC
Q psy8552 174 PP 175 (523)
Q Consensus 174 pp 175 (523)
++
T Consensus 162 ~~ 163 (200)
T cd04388 162 FQ 163 (200)
T ss_pred CC
Confidence 54
No 3
>KOG1264|consensus
Probab=100.00 E-value=9.3e-33 Score=286.36 Aligned_cols=196 Identities=33% Similarity=0.576 Sum_probs=170.1
Q ss_pred CCCCCccccCCC-HHHHHHHhcC------CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE--eCC--eEEeCCCCc
Q psy8552 212 LRDAEWYWGDIS-RDDVNDKLAD------TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH--RNG--RYGFSEPFK 280 (523)
Q Consensus 212 l~~~~wyhg~is-r~~Ae~lL~~------~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~--~~~--~~~~~~~~~ 280 (523)
+-.+.||||.+- |.+|+.+|++ .+||+||||+|++-.|+|+||++..|+|+|.||.. .+| +|++.++.+
T Consensus 531 H~~E~WFHgkle~R~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRIrsk~e~gt~Kyyl~dN~v 610 (1267)
T KOG1264|consen 531 HFGEKWFHGKLEGRTEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRIRSKMEGGTLKYYLTDNLV 610 (1267)
T ss_pred ccchhhhhcccccchHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEEEeeecCCceeEEEecchh
Confidence 345789999998 9999999974 47999999999999999999999999999999985 444 699999999
Q ss_pred cCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcccch
Q psy8552 281 FTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESL 360 (523)
Q Consensus 281 F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~~~l 360 (523)
|+||.+||.||+.+.+.. ......|+.||+.
T Consensus 611 fdslY~LI~~Y~~~~Lr~--aeF~m~LtePvPq----------------------------------------------- 641 (1267)
T KOG1264|consen 611 FDSLYALIQHYRETHLRC--AEFEMRLTEPVPQ----------------------------------------------- 641 (1267)
T ss_pred HHHHHHHHHHHHhccccc--cceEEEecCCCCC-----------------------------------------------
Confidence 999999999999998753 2345566666653
Q ss_pred hhhhhhhchhccccccccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCC-
Q psy8552 361 SQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRP- 438 (523)
Q Consensus 361 ~~~~~e~~ar~m~~l~~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~- 438 (523)
+. .|++++||| .++|.+||++|+.-+
T Consensus 642 --------------------------------------------------p~--~He~k~W~~as~treqAE~mL~rvp~ 669 (1267)
T KOG1264|consen 642 --------------------------------------------------PN--PHESKPWYHASLTREQAEDMLMRVPR 669 (1267)
T ss_pred --------------------------------------------------CC--cccCCccccccccHHHHHHHHhhCcc
Confidence 22 388999999 999999999998765
Q ss_pred CCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccC
Q psy8552 439 DGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515 (523)
Q Consensus 439 ~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~ 515 (523)
||+||||.++ .+.|+||++.+|+++||+|.+++..+.++.. .|.||.+||+||.+++++. .++|++||+.
T Consensus 670 DGaFLiR~~~~~nsy~iSfr~~gkikHcRi~rdGr~fvl~t~--~FesLv~lv~yY~k~~lyR-----~mkLr~PVne 740 (1267)
T KOG1264|consen 670 DGAFLIRKREGSNSYAISFRARGKIKHCRINRDGRHFVLGTS--AFESLVELVSYYEKHPLYR-----KMKLRYPVNE 740 (1267)
T ss_pred CcceEEEeccCCceEEEEEEEcCcEeEEEEccCceEEEeccH--HHHHHHHHHHHHhcChhhh-----cccccCcCCH
Confidence 8999999777 9999999999999999999998876766554 6999999999999999886 8899999963
No 4
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=1.8e-32 Score=255.21 Aligned_cols=161 Identities=19% Similarity=0.287 Sum_probs=143.9
Q ss_pred CCCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCC--CCCCCCHHHHHH
Q psy8552 5 APNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSY--NFSKLEPALLAI 81 (523)
Q Consensus 5 ~p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~--~~~~~d~~~va~ 81 (523)
.+.+|...+..++..||.+|.+|++||+++ |+++|||||++|+ .+++++++.||+|.... +.+..|+|+||+
T Consensus 3 FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~-----gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~ 77 (188)
T cd04383 3 FNGSLEEYIQDSGQAIPLVVESCIRFINLY-----GLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAG 77 (188)
T ss_pred CCccHHHHHHHCCCCCChHHHHHHHHHHHc-----CCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHH
Confidence 356788888888999999999999999999 8999999999955 99999999999987421 234679999999
Q ss_pred HHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchh
Q psy8552 82 MLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILI 161 (523)
Q Consensus 82 lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~ 161 (523)
+||.|||+||+||||.++|+.|+++.+..+..+++.+++.++.+||+.|+.+|+||+.||.+|+++++.|+|+.. ++|
T Consensus 78 lLK~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLA 155 (188)
T cd04383 78 VLKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPY--NLA 155 (188)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc--cce
Confidence 999999999999999999999999999888899999999999999999999999999999999999999988776 777
Q ss_pred hhhccccccCCCCC
Q psy8552 162 QSFTFVLPTFSSPP 175 (523)
Q Consensus 162 ~~~~~v~P~~~~pp 175 (523)
.+|+ |++...|
T Consensus 156 ivf~---P~L~~~p 166 (188)
T cd04383 156 ICFG---PTLMPVP 166 (188)
T ss_pred eeee---ccccCCC
Confidence 7776 6776553
No 5
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=1.6e-32 Score=257.34 Aligned_cols=160 Identities=24% Similarity=0.337 Sum_probs=143.1
Q ss_pred CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCC---CCHHHHHH
Q psy8552 6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSK---LEPALLAI 81 (523)
Q Consensus 6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~---~d~~~va~ 81 (523)
+-+|...+.+++..||.+|.+|++||+++ |+++|||||++|+ .+|+++++.||++....+++. .|+|+||+
T Consensus 2 G~~L~~~~~~~~~~iP~iv~~ci~~l~~~-----gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~ 76 (194)
T cd04372 2 GCDLTTLVKAHNTQRPMVVDMCIREIEAR-----GLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITG 76 (194)
T ss_pred CCChHHHHHHcCCCCChHHHHHHHHHHHc-----CCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHH
Confidence 45788888888889999999999999999 8999999999955 999999999998644345542 38999999
Q ss_pred HHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchh
Q psy8552 82 MLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILI 161 (523)
Q Consensus 82 lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~ 161 (523)
+||.|||+||+||||+++|+.|+++.+..+.++++++++.++..||+.|+.+|+||+.||++|+++++.|+|+.. ++|
T Consensus 77 lLK~flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~--NLa 154 (194)
T cd04372 77 ALKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAE--NLG 154 (194)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHH--HHH
Confidence 999999999999999999999999999888999999999999999999999999999999999999998887765 778
Q ss_pred hhhccccccCCCCC
Q psy8552 162 QSFTFVLPTFSSPP 175 (523)
Q Consensus 162 ~~~~~v~P~~~~pp 175 (523)
.+|+ |++..+|
T Consensus 155 ivf~---P~Ll~~~ 165 (194)
T cd04372 155 IVFG---PTLMRPP 165 (194)
T ss_pred HHHh---cccCCCC
Confidence 8886 7777765
No 6
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=1.8e-32 Score=256.32 Aligned_cols=160 Identities=19% Similarity=0.309 Sum_probs=143.7
Q ss_pred CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCC--CCCCCCCHHHHHHH
Q psy8552 6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKS--YNFSKLEPALLAIM 82 (523)
Q Consensus 6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~--~~~~~~d~~~va~l 82 (523)
+-+|...+.+++..||.+|.+|++||+++ |+++|||||++|+ .++++|++.+|++... .+++..|+|+||++
T Consensus 2 Gv~L~~~~~r~~~~IP~iv~~ci~~l~~~-----gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~l 76 (196)
T cd04387 2 GVKISTVTKRERSKVPYIVRQCVEEVERR-----GMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGT 76 (196)
T ss_pred CCCHHHHHHhcCCCCChHHHHHHHHHHHh-----CCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHH
Confidence 44677778889999999999999999999 8999999999955 9999999999997532 34567899999999
Q ss_pred HHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhh
Q psy8552 83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQ 162 (523)
Q Consensus 83 LK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~ 162 (523)
||.|||+||+||||+++|+.|+++.+..+..+++.+++.++.+||+.|+.+|+||+.||.+|+++++.|+|+.. ++|.
T Consensus 77 LK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLAi 154 (196)
T cd04387 77 LKLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLH--NLAT 154 (196)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHH--HHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999998887765 7778
Q ss_pred hhccccccCCCCC
Q psy8552 163 SFTFVLPTFSSPP 175 (523)
Q Consensus 163 ~~~~v~P~~~~pp 175 (523)
+|+ |++..|+
T Consensus 155 vf~---P~Llr~~ 164 (196)
T cd04387 155 VFG---PTLLRPS 164 (196)
T ss_pred HHc---cccCCCC
Confidence 886 7777665
No 7
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=2.5e-32 Score=253.63 Aligned_cols=156 Identities=17% Similarity=0.343 Sum_probs=140.1
Q ss_pred cccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8552 9 LNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYL 87 (523)
Q Consensus 9 L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fl 87 (523)
|.... ..+..||.+|.+|++||+++ |+++|||||++|+ .++++|++.||.|....+++++|+|+||++||.||
T Consensus 5 L~~~~-~~~~~vP~il~~~i~~l~~~-----gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~fl 78 (186)
T cd04407 5 VGSLT-SNKTSVPIVLEKLLEHVEMH-----GLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWL 78 (186)
T ss_pred HHHHH-hCCCCCCcHHHHHHHHHHHc-----CCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHH
Confidence 44433 36778999999999999999 8999999999955 99999999999987657788899999999999999
Q ss_pred hhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccc
Q psy8552 88 KSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFV 167 (523)
Q Consensus 88 r~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v 167 (523)
|+||+||||+++|++|+.+.+..+..+++.+++.++..||+.|+.+|++|+.||.+|+++++.|+|+.. ++|.+|+
T Consensus 79 ReLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~--NLAivfa-- 154 (186)
T cd04407 79 RELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPN--ALAIVFA-- 154 (186)
T ss_pred HhCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChh--HHHHhhh--
Confidence 999999999999999999998888889999999999999999999999999999999999998887766 7777776
Q ss_pred cccCCCCC
Q psy8552 168 LPTFSSPP 175 (523)
Q Consensus 168 ~P~~~~pp 175 (523)
|++..+|
T Consensus 155 -P~Ll~~~ 161 (186)
T cd04407 155 -PCLLRCP 161 (186)
T ss_pred -ccccCCC
Confidence 6776654
No 8
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=3.4e-32 Score=252.67 Aligned_cols=158 Identities=19% Similarity=0.375 Sum_probs=140.7
Q ss_pred CCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Q psy8552 7 NLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKT 85 (523)
Q Consensus 7 ~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~ 85 (523)
-+|.... ..++.||.+|.+|++||+++ |+++|||||++|+ .+|++|+++||.+....+++++|+|+||++||.
T Consensus 3 v~L~~l~-~~~~~iP~ii~~~i~~l~~~-----gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~ 76 (186)
T cd04406 3 VELSRLT-SEDRSVPLVVEKLINYIEMH-----GLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQ 76 (186)
T ss_pred CchHHHH-HCCCCCCcHHHHHHHHHHHh-----CCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHH
Confidence 4555443 35678999999999999999 8999999999955 999999999999865567888999999999999
Q ss_pred HHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhc
Q psy8552 86 YLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFT 165 (523)
Q Consensus 86 flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~ 165 (523)
|||+||+||||+++|++|+++....+..++++.++.++.+||+.|+.+|++|+.||.+|+++++.|+|+.. ++|.+|+
T Consensus 77 fLReLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~--NLAivf~ 154 (186)
T cd04406 77 WLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSAN--ALAIVFA 154 (186)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChH--HHHHHhc
Confidence 99999999999999999999998888889999999999999999999999999999999999998887766 7777776
Q ss_pred cccccCCCCC
Q psy8552 166 FVLPTFSSPP 175 (523)
Q Consensus 166 ~v~P~~~~pp 175 (523)
|++..+|
T Consensus 155 ---P~ll~~p 161 (186)
T cd04406 155 ---PCILRCP 161 (186)
T ss_pred ---ccccCCC
Confidence 6666654
No 9
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=4.6e-32 Score=252.84 Aligned_cols=158 Identities=22% Similarity=0.320 Sum_probs=143.1
Q ss_pred CCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Q psy8552 7 NLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKT 85 (523)
Q Consensus 7 ~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~ 85 (523)
..|.+.+...+..||.+|.+|++||+++ |+++|||||++|+ .+|++++++|++|....+++..|+|+||++||.
T Consensus 4 ~~~~~~~~~~~~~IP~~l~~ci~~ie~~-----gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~ 78 (193)
T cd04382 4 GELADFDPSTSPMIPALIVHCVNEIEAR-----GLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKD 78 (193)
T ss_pred ccccccCCCCCCCccHHHHHHHHHHHHc-----CCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHH
Confidence 3577888889999999999999999999 8999999999965 999999999999876457778899999999999
Q ss_pred HHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhc
Q psy8552 86 YLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFT 165 (523)
Q Consensus 86 flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~ 165 (523)
|||+||+||||.++|+.|+++.+..+.++++.+++.++..||+.|+.+|+||+.||.+|++ +..|+|+.. ++|.+|+
T Consensus 79 fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~--NLAivf~ 155 (193)
T cd04382 79 FLRSLKEPLITFALWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDIN--NLARVFG 155 (193)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChH--Hhhhhhh
Confidence 9999999999999999999999988899999999999999999999999999999999999 888877765 7777776
Q ss_pred cccccCCCCC
Q psy8552 166 FVLPTFSSPP 175 (523)
Q Consensus 166 ~v~P~~~~pp 175 (523)
|++..++
T Consensus 156 ---P~L~~~~ 162 (193)
T cd04382 156 ---PTIVGYS 162 (193)
T ss_pred ---chhcCCC
Confidence 6666554
No 10
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.4e-32 Score=255.83 Aligned_cols=159 Identities=24% Similarity=0.354 Sum_probs=141.0
Q ss_pred CCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Q psy8552 7 NLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKT 85 (523)
Q Consensus 7 ~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~ 85 (523)
=+|.......+..||.+|.+|++||+++ |+++|||||++|+ ..|++|++.||+|....+++++|+|+||++||.
T Consensus 3 v~l~~l~~~~~~~vP~iv~~ci~~i~~~-----gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~ 77 (200)
T cd04408 3 VDFSQLPRDFPEEVPFVVVRCTAEIENR-----ALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKH 77 (200)
T ss_pred CCHHHHHHhCCCCCChHHHHHHHHHHHc-----CCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHH
Confidence 3567777888999999999999999999 8999999999965 999999999999876567888999999999999
Q ss_pred HHhhcCCCCCChhhHHHHHHHhcC-C-----------ChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy8552 86 YLKSLTEPLIPYVYYEKFVSLLSG-S-----------NDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGV 153 (523)
Q Consensus 86 flr~LpePli~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m 153 (523)
|||+||+||||+++|+.|+++.+. . +..+++.+++.++..||+.|+.+|+||+.||++|+++++.|+|
T Consensus 78 fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM 157 (200)
T cd04408 78 FLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKM 157 (200)
T ss_pred HHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 999999999999999999998752 1 2457899999999999999999999999999999999998887
Q ss_pred CCCccchhhhhccccccCCCCC
Q psy8552 154 REPPTILIQSFTFVLPTFSSPP 175 (523)
Q Consensus 154 ~~~~~~l~~~~~~v~P~~~~pp 175 (523)
+.. ++|.+|+ |++..++
T Consensus 158 ~~~--NLAivf~---P~Ll~~~ 174 (200)
T cd04408 158 SPN--NLGIVFG---PTLLRPL 174 (200)
T ss_pred CHh--Hhhhhhc---cccCCCC
Confidence 765 7777776 6776665
No 11
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.98 E-value=5.3e-32 Score=252.31 Aligned_cols=159 Identities=21% Similarity=0.301 Sum_probs=142.7
Q ss_pred CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC---CCCHHHHHH
Q psy8552 6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS---KLEPALLAI 81 (523)
Q Consensus 6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~---~~d~~~va~ 81 (523)
+-+|...+.+.+..||.+|.+|++||+++ |+++|||||++|+ ..+++|++.+|.+.. +++. ..|+|+||+
T Consensus 2 Gv~L~~~~~~~~~~iP~~l~~~i~~l~~~-----gl~~eGIFR~sg~~~~v~~l~~~~d~~~~-~~~~~~~~~d~h~va~ 75 (187)
T cd04403 2 GCHLEALCQRENSTVPKFVRLCIEAVEKR-----GLDVDGIYRVSGNLAVIQKLRFAVDHDEK-LDLDDSKWEDIHVITG 75 (187)
T ss_pred CCChHHHHHHcCCCCChHHHHHHHHHHHh-----CCCcCceeeecCcHHHHHHHHHHhcCCCC-CCccccccccHHHHHH
Confidence 56788888888999999999999999999 8999999999955 999999999999764 3332 458999999
Q ss_pred HHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchh
Q psy8552 82 MLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILI 161 (523)
Q Consensus 82 lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~ 161 (523)
+||.|||+||+||||+++|+.|+++.+..+..+++.+++.++..||+.|+.+|+||+.||.+|+++++.|+|+.. ++|
T Consensus 76 lLK~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~--NLA 153 (187)
T cd04403 76 ALKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQ--NLA 153 (187)
T ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChH--Hhh
Confidence 999999999999999999999999999888999999999999999999999999999999999999998887755 777
Q ss_pred hhhccccccCCCCC
Q psy8552 162 QSFTFVLPTFSSPP 175 (523)
Q Consensus 162 ~~~~~v~P~~~~pp 175 (523)
.+|+ |++..|+
T Consensus 154 ivf~---P~ll~~~ 164 (187)
T cd04403 154 IVFG---PTLLRPE 164 (187)
T ss_pred hhcc---ccccCCC
Confidence 7776 6776654
No 12
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.98 E-value=6.1e-32 Score=252.89 Aligned_cols=158 Identities=20% Similarity=0.346 Sum_probs=141.0
Q ss_pred CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC----CCCHHHHH
Q psy8552 6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS----KLEPALLA 80 (523)
Q Consensus 6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~----~~d~~~va 80 (523)
+-+|.+.+.+++..||.+|.+|++||+++ |+ +|||||++|+ +++++|++.+|+|.. .++. ..|+|+||
T Consensus 4 G~~L~~~~~~~g~~iP~il~~~i~~l~~~-----g~-~EGIFR~sG~~~~i~~l~~~~d~~~~-~~~~~~~~~~d~h~va 76 (195)
T cd04384 4 GCDLTEHLLNSGQDVPQVLKSCTEFIEKH-----GI-VDGIYRLSGIASNIQRLRHEFDSEQI-PDLTKDVYIQDIHSVS 76 (195)
T ss_pred CccHHHHHHHcCCCCChHHHHHHHHHHHc-----CC-CcCeeeCCCCHHHHHHHHHHHcCCCC-CCcccccccccHHHHH
Confidence 34677777788899999999999999999 77 5999999955 999999999999864 3443 35899999
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccch
Q psy8552 81 IMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTIL 160 (523)
Q Consensus 81 ~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l 160 (523)
++||.|||+||+||||+++|+.|+++.+..+..+++++++.++.+||+.|+.+|+||+.||++|+++++.|+|+.. ++
T Consensus 77 ~lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NL 154 (195)
T cd04384 77 SLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAK--NL 154 (195)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHH--Hh
Confidence 9999999999999999999999999999888999999999999999999999999999999999999998888766 77
Q ss_pred hhhhccccccCCCCC
Q psy8552 161 IQSFTFVLPTFSSPP 175 (523)
Q Consensus 161 ~~~~~~v~P~~~~pp 175 (523)
|.+|+ |++..+|
T Consensus 155 Aivf~---P~L~~~~ 166 (195)
T cd04384 155 AIVWA---PNLLRSK 166 (195)
T ss_pred hHhhh---hhcCCCC
Confidence 77776 7777765
No 13
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=99.98 E-value=6.5e-32 Score=250.45 Aligned_cols=150 Identities=20% Similarity=0.297 Sum_probs=136.0
Q ss_pred CcccccCC----CCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHH
Q psy8552 8 LLNKTDNV----SSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIM 82 (523)
Q Consensus 8 ~L~~~~~~----~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~l 82 (523)
+|.....+ .+..||.+|.+|++||+++ |+++|||||++|+ .+|++|++.+|++.. .+++++|+|+||++
T Consensus 4 ~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~-----gl~~EGIfR~~G~~~~i~~l~~~~~~~~~-~~~~~~d~h~va~l 77 (182)
T cd04381 4 SLSLAVERSRCHDGIDLPLVFRECIDYVEKH-----GMKCEGIYKVSGIKSKVDELKAAYNRRES-PNLEEYEPPTVASL 77 (182)
T ss_pred CHHHHHHhhccCCCCcCChHHHHHHHHHHHh-----CCCCCceeecCCcHHHHHHHHHHHcCCCC-CCccccChHHHHHH
Confidence 44444443 3567999999999999999 8999999999955 999999999999876 68889999999999
Q ss_pred HHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhh
Q psy8552 83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQ 162 (523)
Q Consensus 83 LK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~ 162 (523)
||.|||+||+||||.++|+.|+++.+..++.+++.+++.++..||+.|+.+|+||+.||.+|+++++.|+|+.+ ++|.
T Consensus 78 LK~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLAi 155 (182)
T cd04381 78 LKQYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQ--NISI 155 (182)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHH--HHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999988887766 7777
Q ss_pred hhc
Q psy8552 163 SFT 165 (523)
Q Consensus 163 ~~~ 165 (523)
+|+
T Consensus 156 vfa 158 (182)
T cd04381 156 VLS 158 (182)
T ss_pred HhC
Confidence 786
No 14
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=99.97 E-value=1.6e-31 Score=252.29 Aligned_cols=161 Identities=23% Similarity=0.364 Sum_probs=141.8
Q ss_pred CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHH
Q psy8552 6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLK 84 (523)
Q Consensus 6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK 84 (523)
+-+|...+.+.+..||.+|.+|+++|+++ |+++|||||++|+ ..+++|++.||+|....+++++|+|+||++||
T Consensus 2 G~~L~~~~~~~~~~vP~iv~~ci~~i~~~-----gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK 76 (203)
T cd04378 2 GVDFSQVPRDFPDEVPFIIKKCTSEIENR-----ALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLK 76 (203)
T ss_pred CCChHHHHHHCCCCCChHHHHHHHHHHhc-----CCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHH
Confidence 34677777888899999999999999999 8999999999955 99999999999987656778899999999999
Q ss_pred HHHhhcCCCCCChhhHHHHHHHhcCC--------------ChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhh
Q psy8552 85 TYLKSLTEPLIPYVYYEKFVSLLSGS--------------NDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYA 150 (523)
Q Consensus 85 ~flr~LpePli~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~ 150 (523)
.|||+||+||||+++|+.|+++.+.. +..+++.+++.++..||..|+.+|+||+.||.+|+++++.
T Consensus 77 ~fLReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 156 (203)
T cd04378 77 LFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEE 156 (203)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987521 2245788999999999999999999999999999999999
Q ss_pred cCCCCCccchhhhhccccccCCCCCC
Q psy8552 151 RGVREPPTILIQSFTFVLPTFSSPPA 176 (523)
Q Consensus 151 n~m~~~~~~l~~~~~~v~P~~~~pp~ 176 (523)
|+|+.. ++|.+|+ |++..|+.
T Consensus 157 NkM~~~--NLaivf~---P~Ll~~~~ 177 (203)
T cd04378 157 NKMSPN--NLGIVFG---PTLIRPRP 177 (203)
T ss_pred hCCCHH--Hhhhhhc---cccCCCCC
Confidence 988766 7777776 77777763
No 15
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=2.5e-31 Score=253.10 Aligned_cols=162 Identities=16% Similarity=0.172 Sum_probs=144.5
Q ss_pred CCCCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHH
Q psy8552 4 YAPNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIM 82 (523)
Q Consensus 4 ~~p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~l 82 (523)
.++-||...+++.+..||.+|.+|++||+++ |+++|||||++|+ .+|++|++++|++....++++.++|+||++
T Consensus 4 vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~-----gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~l 78 (220)
T cd04375 4 VFGVPLLVNLQRTGQPLPRSIQQAMRWLRNN-----ALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADM 78 (220)
T ss_pred EecCcHHHHHhhcCCCCChHHHHHHHHHHHh-----CCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHH
Confidence 3456777777888899999999999999999 9999999999955 999999999999765467778899999999
Q ss_pred HHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhh
Q psy8552 83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQ 162 (523)
Q Consensus 83 LK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~ 162 (523)
||.|||+||+||||+++|+.|+++.+..+.++++++++.++..||+.|+.+|++|+.||.+|+++++.|+|+.. ++|.
T Consensus 79 LK~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLAi 156 (220)
T cd04375 79 LKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTAT--NLAV 156 (220)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHH--HHHH
Confidence 99999999999999999999999988778889999999999999999999999999999999999998887766 6777
Q ss_pred hhccccccCCCCC
Q psy8552 163 SFTFVLPTFSSPP 175 (523)
Q Consensus 163 ~~~~v~P~~~~pp 175 (523)
+|+ |++...+
T Consensus 157 vfa---P~L~~~~ 166 (220)
T cd04375 157 CLA---PSLFHLN 166 (220)
T ss_pred HHh---hhhcCCC
Confidence 775 5655543
No 16
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=3e-31 Score=251.30 Aligned_cols=160 Identities=26% Similarity=0.407 Sum_probs=138.4
Q ss_pred CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHH
Q psy8552 6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLK 84 (523)
Q Consensus 6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK 84 (523)
+-+|...+.++++.||.+|.+|+++|+++ |+++|||||++|+ ..+++|++.||+|....+++++|+|+||++||
T Consensus 2 G~~L~~~~~~~~~~iP~il~~ci~~ie~~-----gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK 76 (211)
T cd04409 2 GADFAQVAKKSPDGIPFIIKKCTSEIESR-----ALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLK 76 (211)
T ss_pred CCChHHHHHhCCCCCCcHHHHHHHHHHHc-----CCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHH
Confidence 34677777788889999999999999999 9999999999966 99999999999987656677889999999999
Q ss_pred HHHhhcCCCCCChhhHHHHHHHhcCC---Ch-------------------HHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q psy8552 85 TYLKSLTEPLIPYVYYEKFVSLLSGS---ND-------------------RHIGSRLFALVQDFPAHHFSALRYLMAHLA 142 (523)
Q Consensus 85 ~flr~LpePli~~~~~~~~~~~~~~~---~~-------------------~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~ 142 (523)
.|||+||+||||.++|+.|+++++.. ++ ..++.+++.++..||+.|+.+|+||+.||+
T Consensus 77 ~fLReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~ 156 (211)
T cd04409 77 LYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLH 156 (211)
T ss_pred HHHHhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999987521 10 124678899999999999999999999999
Q ss_pred HHHHhhhhcCCCCCccchhhhhccccccCCCCC
Q psy8552 143 RMCALQYARGVREPPTILIQSFTFVLPTFSSPP 175 (523)
Q Consensus 143 ~v~~~~~~n~m~~~~~~l~~~~~~v~P~~~~pp 175 (523)
+|+++++.|+|+.. ++|.+|+ |++..|+
T Consensus 157 ~V~~~s~~NkM~~~--NLAivf~---P~Llrp~ 184 (211)
T cd04409 157 RVSEQAEENKMSAS--NLGIIFG---PTLIRPR 184 (211)
T ss_pred HHHcccccCCCChH--Hhhhhcc---ccccCCC
Confidence 99999998887766 7777776 7777664
No 17
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=7.3e-31 Score=247.08 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=135.4
Q ss_pred CCCcccccCC--CCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC--C-CCHHHH
Q psy8552 6 PNLLNKTDNV--SSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS--K-LEPALL 79 (523)
Q Consensus 6 p~~L~~~~~~--~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~--~-~d~~~v 79 (523)
+-+|...+.+ .+..||.+|.+|++||+++ |+++|||||++|+ .++++|++.||++....++. . .|+|+|
T Consensus 2 GvpL~~l~~re~~~~~IP~iv~~ci~~L~~~-----gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~v 76 (207)
T cd04379 2 GVPLSRLVEREGESRDVPIVLQKCVQEIERR-----GLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVI 76 (207)
T ss_pred CCChHHHHhhcCCCCCcChHHHHHHHHHHHc-----CCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHH
Confidence 3455555555 4678999999999999999 8999999999955 99999999999975434443 2 389999
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHhcCC---ChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy8552 80 AIMLKTYLKSLTEPLIPYVYYEKFVSLLSGS---NDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREP 156 (523)
Q Consensus 80 a~lLK~flr~LpePli~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~ 156 (523)
|++||.|||+|||||||+++|+.|+++.+.. +.......++.++.+||+.|+++|+||+.||.+|+++++.|+|+..
T Consensus 77 A~lLK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~ 156 (207)
T cd04379 77 TGVLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQ 156 (207)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChH
Confidence 9999999999999999999999999988743 2334566788999999999999999999999999999998887766
Q ss_pred ccchhhhhccccccCCCCCCC
Q psy8552 157 PTILIQSFTFVLPTFSSPPAL 177 (523)
Q Consensus 157 ~~~l~~~~~~v~P~~~~pp~~ 177 (523)
++|.+|+ |++..++..
T Consensus 157 --NLAivf~---P~Ll~~~~~ 172 (207)
T cd04379 157 --NLAVCFG---PVLMFCSQE 172 (207)
T ss_pred --HhHHhhc---cccCCCCcc
Confidence 7788886 777766533
No 18
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=1.1e-30 Score=242.70 Aligned_cols=155 Identities=19% Similarity=0.333 Sum_probs=137.5
Q ss_pred CcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCC--CCCCHHHHHHHHH
Q psy8552 8 LLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNF--SKLEPALLAIMLK 84 (523)
Q Consensus 8 ~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~--~~~d~~~va~lLK 84 (523)
||...+. .+..||.+|.+|++||+++ |+++|||||++|+ .+++++++.||++.. .++ .++|+|+||++||
T Consensus 4 pL~~~~~-~~~~IP~~l~~~i~~l~~~-----gl~~eGIFR~~G~~~~i~~l~~~~~~~~~-~~~~~~~~~~~~va~~lK 76 (185)
T cd04373 4 PLANVVT-SEKPIPIFLEKCVEFIEAT-----GLETEGIYRVSGNKTHLDSLQKQFDQDHN-LDLVSKDFTVNAVAGALK 76 (185)
T ss_pred chHHHHh-CCCCCCcHHHHHHHHHHHc-----CCCCCCeeecCCcHHHHHHHHHHHhcCCC-CCcccccCcHHHHHHHHH
Confidence 4555544 5779999999999999998 8999999999955 999999999999764 344 4678999999999
Q ss_pred HHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhh
Q psy8552 85 TYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSF 164 (523)
Q Consensus 85 ~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~ 164 (523)
.|||+||+||+|+++|+.|+++.+..+..+++.+++.+++.||+.|+.+|+||+.||.+|+++++.|+|+.. ++|.+|
T Consensus 77 ~fLreLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~--NLAi~f 154 (185)
T cd04373 77 SFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSE--NLSICF 154 (185)
T ss_pred HHHhcCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChH--HHHHHH
Confidence 999999999999999999999999888899999999999999999999999999999999999998887765 777777
Q ss_pred ccccccCCCC
Q psy8552 165 TFVLPTFSSP 174 (523)
Q Consensus 165 ~~v~P~~~~p 174 (523)
+ |++..|
T Consensus 155 ~---P~L~~~ 161 (185)
T cd04373 155 W---PTLMRP 161 (185)
T ss_pred c---cccCCC
Confidence 6 566554
No 19
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=2.5e-30 Score=242.06 Aligned_cols=157 Identities=18% Similarity=0.251 Sum_probs=141.9
Q ss_pred CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHH
Q psy8552 6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLK 84 (523)
Q Consensus 6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK 84 (523)
+-||...+. +..||.+|.+|++||+++ |+++|||||++|+ .+++++++.+|+|.. .+++++|+|++|++||
T Consensus 3 G~~L~~~~~--~~~vP~~i~~~i~~l~~~-----g~~~eGiFR~~g~~~~i~~l~~~~~~~~~-~~~~~~~~~~va~~lK 74 (192)
T cd04402 3 GQPLSNICE--DDNLPKPILDMLSLLYQK-----GPSTEGIFRRSANAKACKELKEKLNSGVE-VDLKAEPVLLLASVLK 74 (192)
T ss_pred CCcHHHHhC--CCCCCHHHHHHHHHHHHh-----CCCCCCeeeCCCcHHHHHHHHHHHhCCCC-CCCccCCHHHHHHHHH
Confidence 456777766 678999999999999999 8999999999955 999999999999975 6788999999999999
Q ss_pred HHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhh
Q psy8552 85 TYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSF 164 (523)
Q Consensus 85 ~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~ 164 (523)
.|||+||+||||.+.|+.|+.+.+..+.++++..++.++.+||..|+.+|+||+.||.+|+.+++.|+|++. ++|.+|
T Consensus 75 ~flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~--nLAi~f 152 (192)
T cd04402 75 DFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAF--NLAVCI 152 (192)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHH--Hhhhhc
Confidence 999999999999999999999998888999999999999999999999999999999999999988887766 777777
Q ss_pred ccccccCCCCC
Q psy8552 165 TFVLPTFSSPP 175 (523)
Q Consensus 165 ~~v~P~~~~pp 175 (523)
+ |++..++
T Consensus 153 a---P~l~~~~ 160 (192)
T cd04402 153 A---PSLLWPP 160 (192)
T ss_pred c---ccccCCC
Confidence 6 5665554
No 20
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=4.6e-30 Score=241.89 Aligned_cols=149 Identities=17% Similarity=0.257 Sum_probs=130.6
Q ss_pred CCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCC-CCCCHHHHHHHHHHHHhhcCC
Q psy8552 15 VSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNF-SKLEPALLAIMLKTYLKSLTE 92 (523)
Q Consensus 15 ~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~-~~~d~~~va~lLK~flr~Lpe 92 (523)
..++.||.+|.+|++||+++ |+++|||||++|+ ..|++|++.||+|.. .++ +..|+|+||++||.|||+||+
T Consensus 4 ~~~~~iP~iv~~ci~~l~~~-----gl~~EGIFR~~G~~~~i~~l~~~~d~~~~-~~~~~~~~~h~va~lLK~fLReLPe 77 (206)
T cd04376 4 PIARQVPRLVESCCQHLEKH-----GLQTVGIFRVGSSKKRVRQLREEFDRGID-VVLDENHSVHDVAALLKEFFRDMPD 77 (206)
T ss_pred CCCCCCCHHHHHHHHHHHHc-----CCCCCceeeCCCCHHHHHHHHHHHhcCCC-CCCcccCCHHHHHHHHHHHHHhCCC
Confidence 44668999999999999999 8999999999955 999999999999875 334 357999999999999999999
Q ss_pred CCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhh-----------hcCCCCCccchh
Q psy8552 93 PLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQY-----------ARGVREPPTILI 161 (523)
Q Consensus 93 Pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~-----------~n~m~~~~~~l~ 161 (523)
||+|+++|+.|+.+.+.. .++++.+++.++..||+.|+.+|+||+.||++|++++. .|+|+ ..++|
T Consensus 78 PLi~~~~y~~~i~~~~~~-~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~--~~NLA 154 (206)
T cd04376 78 PLLPRELYTAFIGTALLE-PDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMT--SLNLA 154 (206)
T ss_pred ccCCHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCC--HHHHH
Confidence 999999999999998764 67889999999999999999999999999999999886 45544 45777
Q ss_pred hhhccccccCCCCC
Q psy8552 162 QSFTFVLPTFSSPP 175 (523)
Q Consensus 162 ~~~~~v~P~~~~pp 175 (523)
.+|+ |++..++
T Consensus 155 ivf~---P~Ll~~~ 165 (206)
T cd04376 155 TIFG---PNLLHKQ 165 (206)
T ss_pred HHhh---ccccCCC
Confidence 7776 7777664
No 21
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=4.4e-30 Score=245.74 Aligned_cols=151 Identities=21% Similarity=0.268 Sum_probs=132.7
Q ss_pred CCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCC---CCCCCCCCCHHHHHHHHHHHHhhc
Q psy8552 15 VSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEI---KSYNFSKLEPALLAIMLKTYLKSL 90 (523)
Q Consensus 15 ~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~---~~~~~~~~d~~~va~lLK~flr~L 90 (523)
.+.+.||.+|.+|++||+++ |+++|||||++|+ .++++|++.||++. ..++++++|+|+||++||.|||+|
T Consensus 27 ~~~~~IP~iv~~ci~~l~~~-----gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~~~~~~~vh~va~lLK~fLReL 101 (225)
T cd04396 27 YVYGYIPVVVAKCGVYLKEN-----ATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSFDWDGYTVHDAASVLRRYLNNL 101 (225)
T ss_pred ccCCCCChHHHHHHHHHHHC-----CCCCCCceeCCCCHHHHHHHHHHHccCcccCCcCCccCCCHHHHHHHHHHHHHhC
Confidence 34568999999999999999 8999999999955 99999999999864 235667889999999999999999
Q ss_pred CCCCCChhhHHHHHHHhcC-----------------CChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy8552 91 TEPLIPYVYYEKFVSLLSG-----------------SNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGV 153 (523)
Q Consensus 91 pePli~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m 153 (523)
|+||||+++|++|++++.. .+.++++.+++.++..||+.|+.+|+||+.||++|+++++.|+|
T Consensus 102 PePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 181 (225)
T cd04396 102 PEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDKNLM 181 (225)
T ss_pred CCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 9999999999999987642 35678999999999999999999999999999999999999988
Q ss_pred CCCccchhhhhccccccCCCCC
Q psy8552 154 REPPTILIQSFTFVLPTFSSPP 175 (523)
Q Consensus 154 ~~~~~~l~~~~~~v~P~~~~pp 175 (523)
++. ++|.+|+ |++..+|
T Consensus 182 ~~~--NLAivfa---P~Ll~~~ 198 (225)
T cd04396 182 TAS--NLAAIFQ---PGILSHP 198 (225)
T ss_pred Chh--hhheeec---cccCCCC
Confidence 877 6677775 6776654
No 22
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=5.6e-30 Score=237.92 Aligned_cols=152 Identities=19% Similarity=0.273 Sum_probs=135.3
Q ss_pred CCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCC--CCCCCCCHHHHHHHHHHHHhhc
Q psy8552 14 NVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKS--YNFSKLEPALLAIMLKTYLKSL 90 (523)
Q Consensus 14 ~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~--~~~~~~d~~~va~lLK~flr~L 90 (523)
...+..||.+|.+|++||+++ |+++|||||++|+ .++++|++.|+++... .+.+++|+|+||++||.|||+|
T Consensus 9 ~~~~~~iP~~v~~~i~~l~~~-----g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLreL 83 (184)
T cd04385 9 QLTDNDIPVIVDKCIDFITQH-----GLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLRDL 83 (184)
T ss_pred hhCCCCCChHHHHHHHHHHHh-----CCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHHhC
Confidence 445688999999999999999 8999999999966 9999999999986532 3356789999999999999999
Q ss_pred CCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhcccccc
Q psy8552 91 TEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPT 170 (523)
Q Consensus 91 pePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~ 170 (523)
|+||||.++|++|+++.+..+..+++..++.++.+||+.|+.+|++|+.||++|+++++.|+|+.. ++|.+|+ |+
T Consensus 84 P~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~--nLaiv~~---P~ 158 (184)
T cd04385 84 PDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVH--NLALVFG---PT 158 (184)
T ss_pred CCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChH--Hhhhhhc---cc
Confidence 999999999999999999889999999999999999999999999999999999999988877655 7777776 56
Q ss_pred CCCCC
Q psy8552 171 FSSPP 175 (523)
Q Consensus 171 ~~~pp 175 (523)
+..++
T Consensus 159 ll~~~ 163 (184)
T cd04385 159 LFQTD 163 (184)
T ss_pred cCCCC
Confidence 65554
No 23
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=99.97 E-value=3.7e-30 Score=242.58 Aligned_cols=160 Identities=23% Similarity=0.316 Sum_probs=136.0
Q ss_pred CCCCcccccCCC----CCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCC-CCCCHHH
Q psy8552 5 APNLLNKTDNVS----STTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNF-SKLEPAL 78 (523)
Q Consensus 5 ~p~~L~~~~~~~----~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~-~~~d~~~ 78 (523)
.+-+|.+....+ ...||.+|.+|++||+++ |+++|||||++|+ .+++++++.+|+|.. .++ .+.|+|+
T Consensus 3 FG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~-----gl~~eGIFR~~G~~~~i~~l~~~~d~~~~-~~~~~~~d~h~ 76 (199)
T cd04390 3 FGQRLEDTVAYERKFGPRLVPILVEQCVDFIREH-----GLKEEGLFRLPGQANLVKQLQDAFDAGER-PSFDSDTDVHT 76 (199)
T ss_pred CCccHHHHHHHhcccCCCCCChHHHHHHHHHHHc-----CCCCCCeeeCCCCHHHHHHHHHHHhCCCC-CCccccCCHHH
Confidence 345566554322 356999999999999999 8999999999955 999999999999875 344 3679999
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHhcC--CChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy8552 79 LAIMLKTYLKSLTEPLIPYVYYEKFVSLLSG--SNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREP 156 (523)
Q Consensus 79 va~lLK~flr~LpePli~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~ 156 (523)
||++||.|||+||+||+|+++|+.|+.+.+. .+..+++.+++.++..||+.|+.+|+||+.||.+|+++++.|+|+..
T Consensus 77 va~lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 156 (199)
T cd04390 77 VASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQ 156 (199)
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHH
Confidence 9999999999999999999999999998773 45677888999999999999999999999999999999998887766
Q ss_pred ccchhhhhccccccCCCCC
Q psy8552 157 PTILIQSFTFVLPTFSSPP 175 (523)
Q Consensus 157 ~~~l~~~~~~v~P~~~~pp 175 (523)
++|.+|+ |++..|+
T Consensus 157 --NLAivf~---P~llr~~ 170 (199)
T cd04390 157 --NLATVFG---PNILRPK 170 (199)
T ss_pred --HHHHHhc---cccCCCC
Confidence 7777776 6666653
No 24
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=3.9e-30 Score=245.14 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=139.9
Q ss_pred CCcccccCC-----CCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCC--CCCCCCCCHHH
Q psy8552 7 NLLNKTDNV-----SSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIK--SYNFSKLEPAL 78 (523)
Q Consensus 7 ~~L~~~~~~-----~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~--~~~~~~~d~~~ 78 (523)
-+|...+.+ ++..||.+|.+|++||+++ |+++|||||++|+ ++|++|++++|++.. ..+++.+|+|+
T Consensus 4 v~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~-----gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~ 78 (216)
T cd04391 4 VPLSTLLERDQKKVPGSKVPLIFQKLINKLEER-----GLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHD 78 (216)
T ss_pred CCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHc-----CCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHH
Confidence 345444443 3568999999999999999 8999999999955 999999999998632 35677889999
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcc
Q psy8552 79 LAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPT 158 (523)
Q Consensus 79 va~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~ 158 (523)
||++||.|||+||+||||+++|+.|+++.+..+.++++.+++.++..||+.|+.+|+||+.||++|+++++.|+|+..
T Consensus 79 va~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~-- 156 (216)
T cd04391 79 AASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLW-- 156 (216)
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChH--
Confidence 999999999999999999999999999988888889999999999999999999999999999999999998888766
Q ss_pred chhhhhccccccCCCCCC
Q psy8552 159 ILIQSFTFVLPTFSSPPA 176 (523)
Q Consensus 159 ~l~~~~~~v~P~~~~pp~ 176 (523)
++|.+|| |++.++..
T Consensus 157 NLAivfa---P~l~~~~~ 171 (216)
T cd04391 157 NVAMIMA---PNLFPPRG 171 (216)
T ss_pred HHHHHhc---cccCCCCC
Confidence 6888886 77776653
No 25
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=99.97 E-value=3.8e-30 Score=239.64 Aligned_cols=159 Identities=19% Similarity=0.359 Sum_probs=141.2
Q ss_pred CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHH
Q psy8552 6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLK 84 (523)
Q Consensus 6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK 84 (523)
+-+|.... ..+..||.+|.+|++||+++ |+++|||||++|+ .+++++++.+|++....+++++|+|+||++||
T Consensus 2 G~~L~~~~-~~~~~vP~~l~~~~~~l~~~-----g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK 75 (186)
T cd04377 2 GVSLSSLT-SEDRSVPLVLEKLLEHIEMH-----GLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLK 75 (186)
T ss_pred CCCHHHHH-hCCCCCChHHHHHHHHHHHc-----CCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHH
Confidence 34566554 35678999999999999999 8999999999955 99999999999986557788999999999999
Q ss_pred HHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhh
Q psy8552 85 TYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSF 164 (523)
Q Consensus 85 ~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~ 164 (523)
.|||+||+||||++.|++|+.+....+..+++.+++.++.+||+.|+.+|+||+.||.+|+++++.|+|+.. ++|.+|
T Consensus 76 ~flr~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~--nLaivf 153 (186)
T cd04377 76 QWLRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSAN--ALAIVF 153 (186)
T ss_pred HHHHcCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHH--HHHHHH
Confidence 999999999999999999999999888899999999999999999999999999999999999998888765 777777
Q ss_pred ccccccCCCCC
Q psy8552 165 TFVLPTFSSPP 175 (523)
Q Consensus 165 ~~v~P~~~~pp 175 (523)
+ |++..+|
T Consensus 154 ~---P~ll~~~ 161 (186)
T cd04377 154 A---PCILRCP 161 (186)
T ss_pred h---hHhcCCC
Confidence 6 5555554
No 26
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=4.7e-30 Score=243.90 Aligned_cols=149 Identities=19% Similarity=0.294 Sum_probs=130.6
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCC-CCCCCCCCHHHHHHHHHHHHhhcCCCCCC
Q psy8552 19 TSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIK-SYNFSKLEPALLAIMLKTYLKSLTEPLIP 96 (523)
Q Consensus 19 ~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~-~~~~~~~d~~~va~lLK~flr~LpePli~ 96 (523)
.||.+|.+|++||+++ |+++|||||++|+ .++++|++++|++.. .+++...|+|+||++||.|||+||+||||
T Consensus 26 ~IP~~l~~~i~~l~~~-----gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~~~va~lLK~flReLPepLi~ 100 (213)
T cd04397 26 RIPALIDDIISAMRQM-----DMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENPVQLAALLKKFLRELPDPLLT 100 (213)
T ss_pred CCCHHHHHHHHHHHHc-----CCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcHHHHHHHHHHHHHhCCCccCC
Confidence 6999999999999999 8999999999966 999999999999764 24677889999999999999999999999
Q ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhh---cCCCCCccchhhhhccccccCCC
Q psy8552 97 YVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYA---RGVREPPTILIQSFTFVLPTFSS 173 (523)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~---n~m~~~~~~l~~~~~~v~P~~~~ 173 (523)
+++|+.|+++.+..+.+++++.++.++..||+.|+.+|++|+.||++|+.++.. +.++|+..++|.+|+ |++..
T Consensus 101 ~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~NkM~~~NLAivf~---P~Ll~ 177 (213)
T cd04397 101 FKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVIT---PNILY 177 (213)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCCcCChHHhHHhhc---ccccC
Confidence 999999999999889999999999999999999999999999999999987653 223334447777775 67766
Q ss_pred CC
Q psy8552 174 PP 175 (523)
Q Consensus 174 pp 175 (523)
++
T Consensus 178 ~~ 179 (213)
T cd04397 178 SK 179 (213)
T ss_pred CC
Confidence 54
No 27
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=7.1e-30 Score=241.30 Aligned_cols=162 Identities=18% Similarity=0.279 Sum_probs=143.3
Q ss_pred CCCCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCC--CCCCCHHHHH
Q psy8552 4 YAPNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYN--FSKLEPALLA 80 (523)
Q Consensus 4 ~~p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~--~~~~d~~~va 80 (523)
..+-+|...+..++..||.+|.+|+.||+++ |+++|||||++|+ .+++++++.+|.|....+ ....|+|+||
T Consensus 4 ~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~-----gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va 78 (203)
T cd04386 4 VFGTPLEEHLKRTGREIALPIEACVMCLLET-----GMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVA 78 (203)
T ss_pred cCCCCHHHHHHHcCCCCCHHHHHHHHHHHHc-----CCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHH
Confidence 4567788888788889999999999999999 8999999999955 999999999999875332 2346899999
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccch
Q psy8552 81 IMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTIL 160 (523)
Q Consensus 81 ~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l 160 (523)
++||.|||+||+||+|.++|+.|+++.+..+..+++.+++.++.+||..|+.+|+||+.||.+|+++++.|+|+.. ++
T Consensus 79 ~~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~--nL 156 (203)
T cd04386 79 SALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPS--NI 156 (203)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChH--HH
Confidence 9999999999999999999999999998888889999999999999999999999999999999999988887766 77
Q ss_pred hhhhccccccCCCCC
Q psy8552 161 IQSFTFVLPTFSSPP 175 (523)
Q Consensus 161 ~~~~~~v~P~~~~pp 175 (523)
|.+|+ |++..++
T Consensus 157 ai~fa---P~ll~~~ 168 (203)
T cd04386 157 AIVLA---PNLLWAK 168 (203)
T ss_pred HHHhc---cccCCCC
Confidence 77775 6666654
No 28
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=1.2e-29 Score=238.03 Aligned_cols=160 Identities=20% Similarity=0.278 Sum_probs=141.9
Q ss_pred CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCC-----CCCCHHHH
Q psy8552 6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNF-----SKLEPALL 79 (523)
Q Consensus 6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~-----~~~d~~~v 79 (523)
+-+|...+.+++..||.+|.+|+++|+++ |+++|||||++|+ .+++++++.+|++....+. ...|+|+|
T Consensus 2 G~~L~~~~~~~~~~iP~~v~~~i~~l~~~-----gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~v 76 (192)
T cd04398 2 GVPLEDLILREGDNVPNIVYQCIQAIENF-----GLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSV 76 (192)
T ss_pred CCChHHHHHHcCCCCCHHHHHHHHHHHHh-----CCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHH
Confidence 45777888888899999999999999999 8999999999955 9999999999998643332 24589999
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc
Q psy8552 80 AIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTI 159 (523)
Q Consensus 80 a~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~ 159 (523)
|++||.|||+||+||+|.++|+.|+++.+..+..+++.+++.++.+||..|+.+|+||+.||.+|+.+++.|+|+.. +
T Consensus 77 a~~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~--n 154 (192)
T cd04398 77 ASLLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVN--N 154 (192)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHh--H
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999987765 7
Q ss_pred hhhhhccccccCCCCC
Q psy8552 160 LIQSFTFVLPTFSSPP 175 (523)
Q Consensus 160 l~~~~~~v~P~~~~pp 175 (523)
+|.+|+ |++.+++
T Consensus 155 Laivf~---P~l~~~~ 167 (192)
T cd04398 155 LAIIWG---PTLMNAA 167 (192)
T ss_pred HHHHHh---hhhCCCC
Confidence 777776 6666554
No 29
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=1.4e-29 Score=237.56 Aligned_cols=148 Identities=22% Similarity=0.285 Sum_probs=128.8
Q ss_pred CCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHH-HhCC---CCCCCCC--CCCHHHHHHHHHHHHhhc
Q psy8552 18 TTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHA-YSGE---IKSYNFS--KLEPALLAIMLKTYLKSL 90 (523)
Q Consensus 18 ~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~-~~~~---~~~~~~~--~~d~~~va~lLK~flr~L 90 (523)
+..+.+|.+|++||+++ |+++|||||+||+ .+|+++++. +|.+ ....++. .+|+|+||++||.|||+|
T Consensus 26 ~~~~~iv~~ci~~le~~-----gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReL 100 (203)
T cd04374 26 DIGFKFVRKCIEAVETR-----GINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNL 100 (203)
T ss_pred cccHHHHHHHHHHHHHc-----CCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcC
Confidence 34566899999999999 8999999999955 999999875 5654 1224454 479999999999999999
Q ss_pred CCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhcccccc
Q psy8552 91 TEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPT 170 (523)
Q Consensus 91 pePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~ 170 (523)
|+||||+++|+.|+++.+..+.++++.+++.++..||+.|+.+|++|+.||.+|++++..|+|+.. ++|.+|+ |+
T Consensus 101 PePLi~~~~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLAivf~---P~ 175 (203)
T cd04374 101 PEPLMTYELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVS--NLGVVFG---PT 175 (203)
T ss_pred CCCcCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHH--HHHHHhc---cc
Confidence 999999999999999999888899999999999999999999999999999999999998887766 7777786 67
Q ss_pred CCCCC
Q psy8552 171 FSSPP 175 (523)
Q Consensus 171 ~~~pp 175 (523)
+..|+
T Consensus 176 Llr~~ 180 (203)
T cd04374 176 LLRPQ 180 (203)
T ss_pred cCCCC
Confidence 76653
No 30
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=3.7e-29 Score=235.09 Aligned_cols=159 Identities=18% Similarity=0.267 Sum_probs=138.4
Q ss_pred CCcccccCCC-CCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC---CCCHHHHHH
Q psy8552 7 NLLNKTDNVS-STTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS---KLEPALLAI 81 (523)
Q Consensus 7 ~~L~~~~~~~-~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~---~~d~~~va~ 81 (523)
=||....... +..||.+|.+|+++|+++ |+++|||||++|+ .++++|++.+|+|....++. ..|+|+||+
T Consensus 4 vpl~~~~~~~~~~~vP~iv~~~~~~l~~~-----g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ 78 (196)
T cd04395 4 VPLDDCPPSSENPYVPLIVEVCCNIVEAR-----GLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSS 78 (196)
T ss_pred ccHHHHhcccCCCCCChHHHHHHHHHHHc-----CCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHH
Confidence 3455444433 468999999999999999 8999999999955 99999999999987543433 468999999
Q ss_pred HHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchh
Q psy8552 82 MLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILI 161 (523)
Q Consensus 82 lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~ 161 (523)
+||.|||+||+||||.+.|++|+++.+..+..+++.+++.++.+||+.|+.+|+||+.||.+|+++++.|+|+.. ++|
T Consensus 79 llK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~--nLA 156 (196)
T cd04395 79 LLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPR--NLA 156 (196)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccc--chH
Confidence 999999999999999999999999998888899999999999999999999999999999999999999988766 777
Q ss_pred hhhccccccCCCCC
Q psy8552 162 QSFTFVLPTFSSPP 175 (523)
Q Consensus 162 ~~~~~v~P~~~~pp 175 (523)
.+|+ |++.+++
T Consensus 157 i~fa---P~l~r~~ 167 (196)
T cd04395 157 IVFG---PTLVRTS 167 (196)
T ss_pred Hhhc---cccCCCC
Confidence 7786 5666554
No 31
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=2.8e-29 Score=236.48 Aligned_cols=148 Identities=22% Similarity=0.251 Sum_probs=132.0
Q ss_pred CCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhcCCC
Q psy8552 15 VSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEP 93 (523)
Q Consensus 15 ~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~LpeP 93 (523)
.++..||.+|.+|++||++ |+++|||||++|+ .++++|++++|+|.. .....++|+||++||.|||+||+|
T Consensus 15 ~~~~~IP~il~~~~~~l~~------~l~~EGIFR~sG~~~~i~~l~~~~d~~~~--~~~~~~~~~vaslLK~flReLPeP 86 (202)
T cd04394 15 PEYGNVPKFLVDACTFLLD------HLSTEGLFRKSGSVVRQKELKAKLEGGEA--CLSSALPCDVAGLLKQFFRELPEP 86 (202)
T ss_pred CCCCCCChHHHHHHHHHHH------CCCCCCeeeCCCCHHHHHHHHHHHcCCCC--CccccCHHHHHHHHHHHHhcCCCc
Confidence 4577999999999999985 5889999999955 999999999999875 345678999999999999999999
Q ss_pred CCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccccCCC
Q psy8552 94 LIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSS 173 (523)
Q Consensus 94 li~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~~~~ 173 (523)
|||+++|+.|+++.+..++++++.+++.++..||..|+.+|+||+.||++|+++++.|+|+.. ++|.+|+ |++..
T Consensus 87 Li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~--NLAivfa---P~L~~ 161 (202)
T cd04394 87 LLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSS--NLAVIFA---PNLFQ 161 (202)
T ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHH--HHHHhhc---ceeec
Confidence 999999999999998888888999999999999999999999999999999999988887766 7777886 66666
Q ss_pred CC
Q psy8552 174 PP 175 (523)
Q Consensus 174 pp 175 (523)
++
T Consensus 162 ~~ 163 (202)
T cd04394 162 SE 163 (202)
T ss_pred CC
Confidence 54
No 32
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=99.96 E-value=5.3e-29 Score=232.67 Aligned_cols=159 Identities=20% Similarity=0.280 Sum_probs=137.0
Q ss_pred CCCcccccCC--CCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCC-CCHHHHHH
Q psy8552 6 PNLLNKTDNV--SSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSK-LEPALLAI 81 (523)
Q Consensus 6 p~~L~~~~~~--~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~-~d~~~va~ 81 (523)
+-+|.....+ .+..||.+|.+|++||+++ |+++|||||++|+ .+++++++.+|+|.. .+++. +|+|++|+
T Consensus 4 Gv~L~~l~~~~~~~~~vP~il~~~i~~l~~~-----gl~~eGIFR~~g~~~~i~~l~~~~d~~~~-~~~~~~~d~~~va~ 77 (189)
T cd04393 4 GVPLQELQQAGQPENGVPAVVRHIVEYLEQH-----GLEQEGLFRVNGNAETVEWLRQRLDSGEE-VDLSKEADVCSAAS 77 (189)
T ss_pred cccHHHHHhccCCCCCCChHHHHHHHHHHHc-----CCCCCCeeeCCCCHHHHHHHHHHHcCCCC-CCccccCCHHHHHH
Confidence 4455555443 3568999999999999999 9999999999955 999999999999875 45554 89999999
Q ss_pred HHHHHHhhcCCCCCChhhHHHHHHHhc-CCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccch
Q psy8552 82 MLKTYLKSLTEPLIPYVYYEKFVSLLS-GSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTIL 160 (523)
Q Consensus 82 lLK~flr~LpePli~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l 160 (523)
+||.|||+||+||+|.+.|+.|+++.+ ..++++++.+++.++..||+.|+.+|++|+.||++|+++++.|+|+.. ++
T Consensus 78 ~lK~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~--nL 155 (189)
T cd04393 78 LLRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAE--NL 155 (189)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHH--Hh
Confidence 999999999999999999999999876 446778899999999999999999999999999999999998887765 77
Q ss_pred hhhhccccccCCCCC
Q psy8552 161 IQSFTFVLPTFSSPP 175 (523)
Q Consensus 161 ~~~~~~v~P~~~~pp 175 (523)
|.+|+ |++..++
T Consensus 156 A~vf~---P~l~~~~ 167 (189)
T cd04393 156 AAVFG---PDVFHVY 167 (189)
T ss_pred hhhcc---CceeCCC
Confidence 77775 6665543
No 33
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=5e-29 Score=233.03 Aligned_cols=143 Identities=15% Similarity=0.179 Sum_probs=128.3
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCC----CCCCHHHHHHHHHHHHhhcC
Q psy8552 17 STTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNF----SKLEPALLAIMLKTYLKSLT 91 (523)
Q Consensus 17 ~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~----~~~d~~~va~lLK~flr~Lp 91 (523)
+..||.+|.+|++||+++| |+++|||||++|+ .++++|+++++++.. .++ ...|+|+||++||.|||+||
T Consensus 19 ~~~iP~iv~~~i~~l~~~g----~~~~eGIFR~~G~~~~i~~l~~~~~~~~~-~~~~~~~~~~d~h~va~lLK~flreLP 93 (190)
T cd04400 19 GRDLPSVVYRCIEYLDKNR----AIYEEGIFRLSGSASVIKQLKERFNTEYD-VDLFSSSLYPDVHTVAGLLKLYLRELP 93 (190)
T ss_pred CCCCChHHHHHHHHHHHcC----CcCCCCeeeCCCcHHHHHHHHHHHcCCCC-CCccccccccCHHHHHHHHHHHHHhCC
Confidence 5689999999999999995 5899999999965 999999999999853 232 35689999999999999999
Q ss_pred CCCCChhhHHHHHHHhcCC-ChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhcc
Q psy8552 92 EPLIPYVYYEKFVSLLSGS-NDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTF 166 (523)
Q Consensus 92 ePli~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~ 166 (523)
+||||.++|+.|+++.+.. +..+++.+++.++.+||+.|+.+|++|+.||++|+++++.|+|+.. ++|.+|++
T Consensus 94 ~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLa~vf~P 167 (190)
T cd04400 94 TLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR--NVCIVFSP 167 (190)
T ss_pred cccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChH--HhhhhcCC
Confidence 9999999999999988865 7888999999999999999999999999999999999999888766 77777763
No 34
>KOG0790|consensus
Probab=99.96 E-value=1.2e-28 Score=241.97 Aligned_cols=200 Identities=27% Similarity=0.458 Sum_probs=172.8
Q ss_pred CCCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHHHh
Q psy8552 214 DAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYK 292 (523)
Q Consensus 214 ~~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y~ 292 (523)
+..|||..|+..+||.||+.. .+|+||.|.|+.++|+|+||++.++++.|++|...++.|.+.++.+|.++.+||+||+
T Consensus 3 s~~wfh~~~~g~~ae~Ll~~~g~dgsfl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~~~~~l~~gekfat~~ELvqyym 82 (600)
T KOG0790|consen 3 SRRWFHPDLSGVEAETLLKERGVDGSFLARPSESNPGDFSLSVRRGDKVTHIKIQNSGDFYDLYGGEKFATLAELVQYYM 82 (600)
T ss_pred chhhcCCCccchhHHHHHHHhccccchhhccccCCCcceeEEEEeCCceEEEEEeecCccccccCCccccchHHHHHHHH
Confidence 468999999999999999974 8999999999999999999999999999999998777788888999999999999999
Q ss_pred hCC-cccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcccchhhhhhhhchhc
Q psy8552 293 HES-LSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRL 371 (523)
Q Consensus 293 ~~~-~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~~~l~~~~~e~~ar~ 371 (523)
.+. .....+|....|++|+...
T Consensus 83 e~~~~lkekng~~ielK~pl~cA--------------------------------------------------------- 105 (600)
T KOG0790|consen 83 EHHGQLKEKNGDVIELKYPLNCA--------------------------------------------------------- 105 (600)
T ss_pred hhhHHHHhcCCCEEEecCCCccC---------------------------------------------------------
Confidence 877 2223456667777776431
Q ss_pred cccccccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCC-CCeEEeecCC-
Q psy8552 372 LYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPST- 448 (523)
Q Consensus 372 m~~l~~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~-~G~FLvR~s~- 448 (523)
+-.++.||| .++..+||.+|.+++ .|+||||+|.
T Consensus 106 -------------------------------------------dptserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs 142 (600)
T KOG0790|consen 106 -------------------------------------------DPTSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQS 142 (600)
T ss_pred -------------------------------------------CchhhhhhccCCCchhHHHHHHhcCCCccEEEecccc
Confidence 123446999 999999999997765 8999999999
Q ss_pred -CCceEEEEEECC---------eeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccC
Q psy8552 449 -TGQYALSIVCSG---------APKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515 (523)
Q Consensus 449 -~~~~~Ls~~~~~---------~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~ 515 (523)
||.|+||++.+. +|.|..|...+..|-. +++..|+||.+||+||+++++.+. .|-...|++|...
T Consensus 143 ~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~~kydV-Ggge~F~sltdLidhykknpmvEt-~gtvv~LrqP~na 217 (600)
T KOG0790|consen 143 HPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQEGKYDV-GGGERFDSLTDLVEHYKKNPMVET-LGTVVYLRQPLNA 217 (600)
T ss_pred CCCceEEEEEcCCcccCCCCccceEEEEEEeccccccc-CCccccchHHHHHHHhccCchhhh-cceeEEeeccccc
Confidence 999999999965 8999999998866655 556899999999999999999984 7888999999874
No 35
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=2.4e-28 Score=230.64 Aligned_cols=141 Identities=18% Similarity=0.250 Sum_probs=122.8
Q ss_pred HHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC--CCCHHHHHHHHHHHHhhcCCCCCChhh
Q psy8552 23 KSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS--KLEPALLAIMLKTYLKSLTEPLIPYVY 99 (523)
Q Consensus 23 vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~--~~d~~~va~lLK~flr~LpePli~~~~ 99 (523)
.|.+||+||++ |+++|||||+||+ .++++|++++|+|.. ++++ ++|+|+||++||.|||+||+||||.++
T Consensus 12 ~v~~~i~~l~~------gl~~EGIFR~sGs~~~i~~L~~~~d~~~~-~~~~~~~~~~h~va~lLK~flReLPePLi~~~~ 84 (208)
T cd04392 12 QIYQLIEYLEK------NLRVEGLFRKPGNSARQQELRDLLNSGTD-LDLESGGFHAHDCATVLKGFLGELPEPLLTHAH 84 (208)
T ss_pred HHHHHHHHHHh------CCCCcceeeCCCcHHHHHHHHHHHHcCCC-CCcccccCCHHHHHHHHHHHHHhCCCccCCHHH
Confidence 88999999996 6899999999955 999999999999875 4543 579999999999999999999999999
Q ss_pred HHHHHHHhc------------CCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccc
Q psy8552 100 YEKFVSLLS------------GSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFV 167 (523)
Q Consensus 100 ~~~~~~~~~------------~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v 167 (523)
|+.|+++.+ ..+.+.++.+++.++..||+.|+.+|+||+.||++|+++++.|+|+.. ++|.+|+
T Consensus 85 y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLAivf~-- 160 (208)
T cd04392 85 YPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSAD--NLALLFT-- 160 (208)
T ss_pred HHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCHH--HHHHHhC--
Confidence 999988664 234567889999999999999999999999999999999998888765 7777775
Q ss_pred cccCCCCC
Q psy8552 168 LPTFSSPP 175 (523)
Q Consensus 168 ~P~~~~pp 175 (523)
|++..|+
T Consensus 161 -P~Ll~~~ 167 (208)
T cd04392 161 -PHLICPR 167 (208)
T ss_pred -cccCCCC
Confidence 6776654
No 36
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=3.4e-28 Score=228.63 Aligned_cols=160 Identities=21% Similarity=0.318 Sum_probs=138.5
Q ss_pred CCCCCcccccCCCC--CCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCC-CHHHH
Q psy8552 4 YAPNLLNKTDNVSS--TTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKL-EPALL 79 (523)
Q Consensus 4 ~~p~~L~~~~~~~~--~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~-d~~~v 79 (523)
+.+-+|.....+.+ ..||.+|.+|++||+++ |+++|||||++|+ .+++++++.+|+|.. .+++.+ |+|++
T Consensus 5 ~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~-----g~~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~~~~~~d~~~v 78 (195)
T cd04404 5 QFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAH-----ALTTEGIFRRSANTQVVKEVQQKYNMGEP-VDFDQYEDVHLP 78 (195)
T ss_pred cCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHc-----CCCCCCeeeCCCcHHHHHHHHHHHhCCCC-CCcccccCHHHH
Confidence 45566766665543 78999999999999998 9999999999955 999999999999865 566676 99999
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc
Q psy8552 80 AIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTI 159 (523)
Q Consensus 80 a~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~ 159 (523)
|++||.|||+||+||+|.++|+.|+++... +..+++..++.++.+||+.|+.+|++|+.||.+|+++++.|+|+.. +
T Consensus 79 a~~LK~~lr~Lp~pLi~~~~~~~l~~~~~~-~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~--n 155 (195)
T cd04404 79 AVILKTFLRELPEPLLTFDLYDDIVGFLNV-DKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNS--N 155 (195)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHh--H
Confidence 999999999999999999999999998765 4677889999999999999999999999999999999998887766 7
Q ss_pred hhhhhccccccCCCCC
Q psy8552 160 LIQSFTFVLPTFSSPP 175 (523)
Q Consensus 160 l~~~~~~v~P~~~~pp 175 (523)
+|.+|| |++..++
T Consensus 156 La~vfa---P~l~~~~ 168 (195)
T cd04404 156 LAVVFG---PNLLWAK 168 (195)
T ss_pred hheeee---ccccCCC
Confidence 777776 5555543
No 37
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=2.9e-28 Score=230.68 Aligned_cols=164 Identities=20% Similarity=0.251 Sum_probs=134.2
Q ss_pred CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCcc----ceEEecCCh-hHHHHHHHHHhCCCCCC----CCCCCCH
Q psy8552 6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSA----ANLFEPGNA-SQVAELFHAYSGEIKSY----NFSKLEP 76 (523)
Q Consensus 6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~----eGifR~~~~-~~v~~l~~~~~~~~~~~----~~~~~d~ 76 (523)
+-+|...+.+++..||.+|.+|++||++++. ++.. +||||++++ +.+++||++||++.... +++++|+
T Consensus 2 Gv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~---~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv 78 (212)
T cd04399 2 GVDLETRCRLDKKVVPLIVSAILSYLDQLYP---DLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEP 78 (212)
T ss_pred CCcHHHHHhhcCCCCCHHHHHHHHHHHHhCc---cccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCH
Confidence 3467777777888999999999999999732 2333 399999955 99999999999986421 2457899
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHHHHHHHhc------CCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhh
Q psy8552 77 ALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLS------GSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYA 150 (523)
Q Consensus 77 ~~va~lLK~flr~LpePli~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~ 150 (523)
|+||++||.||||||+||+|+++|+.|+++.. ..+.++++++++.++..||..|+.+|++|+.||.+|++++..
T Consensus 79 ~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~ 158 (212)
T cd04399 79 STVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKM 158 (212)
T ss_pred HHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988653 256789999999999999999999999999999999998766
Q ss_pred cC-CCCCccchhhhhccccccCCCCC
Q psy8552 151 RG-VREPPTILIQSFTFVLPTFSSPP 175 (523)
Q Consensus 151 n~-m~~~~~~l~~~~~~v~P~~~~pp 175 (523)
|. ++|+..++|.+|| |++++|.
T Consensus 159 ~~~~kM~~~nLa~vfg---p~llr~~ 181 (212)
T cd04399 159 GESEEEYADKLATSLS---REILRPI 181 (212)
T ss_pred ccccccCHHHHHHHhh---hhhcCCC
Confidence 64 2244446677775 6776653
No 38
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.95 E-value=9.4e-28 Score=223.13 Aligned_cols=145 Identities=21% Similarity=0.253 Sum_probs=120.0
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC
Q psy8552 17 STTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLI 95 (523)
Q Consensus 17 ~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~LpePli 95 (523)
+..||.+|.+|+++|.+.+ |+++|||||++|+ .+++++++.+|+|.. ......|+|+||++||.|||+||+||+
T Consensus 18 ~~~iP~il~~~i~~l~~~~----gl~~EGIFR~~G~~~~i~~l~~~~d~~~~-~~~~~~d~h~va~lLK~fLReLpePli 92 (187)
T cd04389 18 ELKLPWILTFLSEKVLALG----GFQTEGIFRVPGDIDEVNELKLRVDQWDY-PLSGLEDPHVPASLLKLWLRELEEPLI 92 (187)
T ss_pred CCCCCchHHHHHHHHHHcC----CCcCCCeeeCCCCHHHHHHHHHHHhcCCC-CccccCCHHHHHHHHHHHHHhCCCCCC
Confidence 4579999999999997654 9999999999955 999999999999865 223456899999999999999999999
Q ss_pred ChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccccCCCCC
Q psy8552 96 PYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSSPP 175 (523)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~~~~pp 175 (523)
|+++|++|+++.. +. ..++.++..||+.|+.+|.||+.||.+|++++....++|+..++|.+|+ |++..++
T Consensus 93 ~~~~~~~~i~~~~--~~----~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~---P~l~~~~ 163 (187)
T cd04389 93 PDALYQQCISASE--DP----DKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFA---PNILRCT 163 (187)
T ss_pred CHHHHHHHHHhhc--CH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHc---cccCCCC
Confidence 9999999998763 22 3467789999999999999999999999986543334445558888886 6666553
No 39
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.94 E-value=3.5e-26 Score=218.40 Aligned_cols=144 Identities=25% Similarity=0.364 Sum_probs=124.2
Q ss_pred CCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hH----HHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhh
Q psy8552 15 VSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQ----VAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKS 89 (523)
Q Consensus 15 ~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~----v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~ 89 (523)
.....||.+|.+|++||+++ |+++|||||++|+ .. ++++++.+|+|.. .. ...|+|++|++||.|||+
T Consensus 45 ~~~~~iP~~l~~~i~~L~~~-----gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~-~~-~~~~~~~va~~LK~fLr~ 117 (220)
T cd04380 45 EVPLSIPKEIWRLVDYLYTR-----GLAQEGLFEEPGLPSEPGELLAEIRDALDTGSP-FN-SPGSAESVAEALLLFLES 117 (220)
T ss_pred CCccccCHHHHHHHHHHHHc-----CCcccCcccCCCcccchHHHHHHHHHHHhCCCC-CC-CCCCHHHHHHHHHHHHHh
Confidence 34567999999999999998 8999999999965 77 9999999999865 22 678999999999999999
Q ss_pred cCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhcccc
Q psy8552 90 LTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQ-DFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVL 168 (523)
Q Consensus 90 LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~ 168 (523)
|||||||+++|+.|+++.. .+. ...+.+++ .||+.|+++|.||+.||++|+++++.|+|+.. ++|.+||
T Consensus 118 LpePlip~~~y~~~~~~~~-~~~----~~~~~ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~--nLA~vF~--- 187 (220)
T cd04380 118 LPDPIIPYSLYERLLEAVA-NNE----EDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADRGLDEN--TLATIFG--- 187 (220)
T ss_pred CCCCccCHHHHHHHHHHhc-CcH----HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHH--HhHHHhc---
Confidence 9999999999999999872 122 23567788 99999999999999999999999998887766 7888886
Q ss_pred ccCCCCC
Q psy8552 169 PTFSSPP 175 (523)
Q Consensus 169 P~~~~pp 175 (523)
|++..+|
T Consensus 188 P~Llr~~ 194 (220)
T cd04380 188 RVLLRDP 194 (220)
T ss_pred chhccCC
Confidence 6666554
No 40
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.94 E-value=9.6e-26 Score=208.62 Aligned_cols=147 Identities=28% Similarity=0.435 Sum_probs=131.8
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCC-CCCCCCHHHHHHHHHHHHhhcCCCCCC
Q psy8552 19 TSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSY-NFSKLEPALLAIMLKTYLKSLTEPLIP 96 (523)
Q Consensus 19 ~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~-~~~~~d~~~va~lLK~flr~LpePli~ 96 (523)
.||.++.+|++||+++ |+++|||||++|+ .+++++++.++++.... ....+|+|++|++||.|||+||+||||
T Consensus 2 ~vP~~l~~~~~~l~~~-----g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~ 76 (174)
T smart00324 2 PIPIIVEKCIEYLEKR-----GLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIP 76 (174)
T ss_pred CCChHHHHHHHHHHHc-----CCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCC
Confidence 5899999999999998 9999999999955 99999999999987522 367889999999999999999999999
Q ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccccCCCCC
Q psy8552 97 YVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSSPP 175 (523)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~~~~pp 175 (523)
.+.|+.|+++.+..+..+++..++.++..||..|+.+|.+|+.||++|+.+++.|+|+.. ++|.+|+ |.+..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~--nLa~~f~---P~l~~~~ 150 (174)
T smart00324 77 YELYEEFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTAR--NLAIVFG---PTLLRPP 150 (174)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHH--HHHHHHh---cccCCCC
Confidence 999999999998888899999999999999999999999999999999998888877765 7788886 4554443
No 41
>KOG4269|consensus
Probab=99.92 E-value=3.3e-25 Score=233.06 Aligned_cols=152 Identities=20% Similarity=0.325 Sum_probs=133.6
Q ss_pred CCCCCCCCHHHHHHHHHHh-ccCCCCCCCccceEEecCC-hhHHHHHHHHHhCCC-CC--CCCCCCCHHHHHHHHHHHHh
Q psy8552 14 NVSSTTSPFKSDNLKAASE-HYSKPDCGLSAANLFEPGN-ASQVAELFHAYSGEI-KS--YNFSKLEPALLAIMLKTYLK 88 (523)
Q Consensus 14 ~~~~~~vP~vv~~~i~~l~-~~~~~~~Gl~~eGifR~~~-~~~v~~l~~~~~~~~-~~--~~~~~~d~~~va~lLK~flr 88 (523)
.+....+|.||++|++||+ .+ |++.|||||++| +..|++|+++||.+- .+ ...+++|+|+||++||+|||
T Consensus 913 ~~n~s~lP~VVyrCvEyle~~R-----gieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~dVn~IaGlLKLYlR 987 (1112)
T KOG4269|consen 913 KRNVSGLPYVVYRCVEYLESCR-----GIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMDVNAIAGLLKLYLR 987 (1112)
T ss_pred eecccCCchHHHHHHHHHHhcc-----ccchhceEEecccHHHHHHHHHHhccccCchhhhccccccHHHHHHHHHHHHH
Confidence 4566789999999999999 55 899999999995 599999999999982 11 22346799999999999999
Q ss_pred hcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhcccc
Q psy8552 89 SLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVL 168 (523)
Q Consensus 89 ~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~ 168 (523)
+||+||++.++|..|.+.....++.+..-.++.+|..||++|..++-.|+.||.||++++..|+|+.. +++.+|+
T Consensus 988 ~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKMnlr--NlciVFs--- 1062 (1112)
T KOG4269|consen 988 ELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKMNLR--NLCIVFS--- 1062 (1112)
T ss_pred hCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhccccccccc--ceeeeec---
Confidence 99999999999999999999889999888999999999999999999999999999999999988877 6777776
Q ss_pred ccCCCCC
Q psy8552 169 PTFSSPP 175 (523)
Q Consensus 169 P~~~~pp 175 (523)
||+..|.
T Consensus 1063 PTLniPs 1069 (1112)
T KOG4269|consen 1063 PTLNIPS 1069 (1112)
T ss_pred ccccCcH
Confidence 6766553
No 42
>KOG2200|consensus
Probab=99.92 E-value=6.8e-25 Score=222.79 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=139.2
Q ss_pred CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCC--CCCCCCCHHHHHHH
Q psy8552 6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKS--YNFSKLEPALLAIM 82 (523)
Q Consensus 6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~--~~~~~~d~~~va~l 82 (523)
+=||...+++.+..+|.+|.+.++||+++ ||+++||||++|. +.|+.|++.++..... ++++....|++|++
T Consensus 302 GVPL~vll~rtG~~lP~~iQq~m~~lr~~-----~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdl 376 (674)
T KOG2200|consen 302 GVPLTVLLQRTGQPLPLSIQQAMRYLRER-----GLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADL 376 (674)
T ss_pred ecCceeeeccCCCcCcHHHHHHHHHHHHh-----CccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHH
Confidence 44677778899999999999999999999 9999999999955 9999999999986543 66777789999999
Q ss_pred HHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhh
Q psy8552 83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQ 162 (523)
Q Consensus 83 LK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~ 162 (523)
||.|||+||+||+|.++-+.|+.+.+..+..+++++++.++-.||.+||++|+.|+.||.+|+.+..+|+|+..|.+++.
T Consensus 377 LKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvcm 456 (674)
T KOG2200|consen 377 LKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVCM 456 (674)
T ss_pred HHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887544443
Q ss_pred h
Q psy8552 163 S 163 (523)
Q Consensus 163 ~ 163 (523)
+
T Consensus 457 A 457 (674)
T KOG2200|consen 457 A 457 (674)
T ss_pred c
Confidence 3
No 43
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.92 E-value=1.4e-24 Score=199.63 Aligned_cols=144 Identities=24% Similarity=0.410 Sum_probs=130.5
Q ss_pred CHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCChhh
Q psy8552 21 PFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVY 99 (523)
Q Consensus 21 P~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~LpePli~~~~ 99 (523)
|.+|.+|++||+++ |+++|||||++|+ .+++++++.++.+....+...+|+|++|++||.|||+||+||||.+.
T Consensus 1 P~~l~~~~~~l~~~-----~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~ 75 (169)
T cd00159 1 PLIIEKCIEYLEKN-----GLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFEL 75 (169)
T ss_pred ChHHHHHHHHHHHc-----CCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHH
Confidence 88999999999998 8999999999955 89999999999987633567889999999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccccCCCC
Q psy8552 100 YEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSSP 174 (523)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~~~~p 174 (523)
|+.|+.+.+..+...++..++.++..||+.|+.+|.+|+.||.+|+.+++.|+|+.. ++|.+|+ |++.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~--nLa~~f~---p~l~~~ 145 (169)
T cd00159 76 YDEFIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTAS--NLAIVFA---PTLLRP 145 (169)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHH--HHHHHHc---cccCCC
Confidence 999999999889999999999999999999999999999999999999888887765 7788886 555444
No 44
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.92 E-value=8e-25 Score=197.60 Aligned_cols=138 Identities=24% Similarity=0.356 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCC-CCCCCCHHHHHHHHHHHHhhcCCCCCChh
Q psy8552 21 PFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSY-NFSKLEPALLAIMLKTYLKSLTEPLIPYV 98 (523)
Q Consensus 21 P~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~-~~~~~d~~~va~lLK~flr~LpePli~~~ 98 (523)
|.+|..|++||+++ |++++||||++|+ .+++++++.++.+.... .++.+|+|+||++||.||++||+||++.+
T Consensus 1 P~~l~~~~~~l~~~-----g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~ 75 (151)
T PF00620_consen 1 PRILNDCVDYLEKK-----GLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSE 75 (151)
T ss_dssp EHHHHHHHHHHHHH-----TTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHH
T ss_pred ChHHHHHHHHHHHh-----CCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhh
Confidence 88999999999999 8999999999955 99999999999997633 67789999999999999999999999999
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhc
Q psy8552 99 YYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFT 165 (523)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~ 165 (523)
+|+.|+++.+..+..++++.++.++..||..|+.+|.+|+.||.+|+++++.|+|+.. ++|.+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~--~La~~f~ 140 (151)
T PF00620_consen 76 LYDKFIAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAE--NLAIIFA 140 (151)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHH--HHHHHHH
T ss_pred HHHHHhhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHH--HHHHHHH
Confidence 9999999888889999999999999999999999999999999999999998877655 7777776
No 45
>KOG4270|consensus
Probab=99.91 E-value=1.8e-24 Score=225.93 Aligned_cols=156 Identities=22% Similarity=0.317 Sum_probs=137.0
Q ss_pred cccccCCCCCCCCHHHHHHHH-HHhccCCCCCCCccceEEecC-ChhHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHH
Q psy8552 9 LNKTDNVSSTTSPFKSDNLKA-ASEHYSKPDCGLSAANLFEPG-NASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTY 86 (523)
Q Consensus 9 L~~~~~~~~~~vP~vv~~~i~-~l~~~~~~~~Gl~~eGifR~~-~~~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f 86 (523)
++..+...++.||.++.-+.+ .+...+ |++.|||||+. .+++++.||++||.|.....+ ..|+|+||++||.|
T Consensus 154 ~Q~s~~~~~n~vp~i~~l~~~~~l~~e~----Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~-~iDvH~~agllKay 228 (577)
T KOG4270|consen 154 MQLSYDPRGNFVPLILHLLQSGRLLLEG----GLKEEGLFRINGEASKVERLREALDCGVVPDQL-YIDVHCLAGLLKAY 228 (577)
T ss_pred hhcccccCCCcchhhhHhhhhhhhhhhc----CccccceeccCCCchHHHHHHHHHcCCcccccc-cCCHHHHHHHHHHH
Confidence 444555556668999999999 777666 99999999999 779999999999999874334 78999999999999
Q ss_pred HhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhcc
Q psy8552 87 LKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTF 166 (523)
Q Consensus 87 lr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~ 166 (523)
|||||+|++|+.+|++|+.+.+..+++++.+.++.++.+||+.|+..|+|+|.||+.|+++++.|+|+.. ++|.+|+
T Consensus 229 LRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~--NlAiV~g- 305 (577)
T KOG4270|consen 229 LRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSAR--NLAIVFG- 305 (577)
T ss_pred HHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchh--hceeEec-
Confidence 9999999999999999999999999999999999999999999999999999999999999999888766 7777776
Q ss_pred ccccCCCC
Q psy8552 167 VLPTFSSP 174 (523)
Q Consensus 167 v~P~~~~p 174 (523)
|+.+-+
T Consensus 306 --PNl~~~ 311 (577)
T KOG4270|consen 306 --PNLLWM 311 (577)
T ss_pred --CCcccc
Confidence 455333
No 46
>KOG4407|consensus
Probab=99.90 E-value=1e-23 Score=227.63 Aligned_cols=143 Identities=19% Similarity=0.313 Sum_probs=128.9
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCC---C--CCCHHHHHHHHHHHHhh
Q psy8552 16 SSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNF---S--KLEPALLAIMLKTYLKS 89 (523)
Q Consensus 16 ~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~---~--~~d~~~va~lLK~flr~ 89 (523)
..+-||.+|.-|+..+|.+ ||++.||||++|+ ..|.+|++.++++....+. + .-|+++|.+|||.|||.
T Consensus 1170 ~n~yVP~iV~~C~~vVEt~-----Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSLLK~F~Rk 1244 (1973)
T KOG4407|consen 1170 CNDYVPMIVQACVCVVETY-----GLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSLLKMFLRK 1244 (1973)
T ss_pred ccccchHHHHHHHHHHhhc-----CccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHHHHHHHHh
Confidence 4667999999999999999 9999999999955 9999999999998432221 1 22899999999999999
Q ss_pred cCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhc
Q psy8552 90 LTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFT 165 (523)
Q Consensus 90 LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~ 165 (523)
|||||+|.++|..||++.+..+.-+|+..|+.+|++||.++|+||++|+.||.+|+.++++|+|... +||++|+
T Consensus 1245 LPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEpr--NLAi~FG 1318 (1973)
T KOG4407|consen 1245 LPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPR--NLAIMFG 1318 (1973)
T ss_pred CCcccccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccccccccccc--ceeEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999987655 7778886
No 47
>KOG3564|consensus
Probab=99.90 E-value=2.9e-23 Score=205.73 Aligned_cols=156 Identities=19% Similarity=0.288 Sum_probs=139.9
Q ss_pred cccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8552 9 LNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYL 87 (523)
Q Consensus 9 L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fl 87 (523)
|.+.+......||.+|..|+.+||++ ||.+|||||++|. ..+++|+++|-++...+.+...|+|+||++||.||
T Consensus 351 L~DF~~s~aPMIPalVVHCVneIEaR-----GLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFL 425 (604)
T KOG3564|consen 351 LADFAPSTAPMIPALVVHCVNEIEAR-----GLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFL 425 (604)
T ss_pred hhhhcccccccchHHHHHHHHHHHHc-----cccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHH
Confidence 56666677788999999999999999 9999999999955 99999999999998877778889999999999999
Q ss_pred hhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccc
Q psy8552 88 KSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFV 167 (523)
Q Consensus 88 r~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v 167 (523)
|+|.|||||..+..+|++|+.+.|++..+.++-..+..||..||+||.|||-|+.+|++ +..++|+.. ++|.+|+
T Consensus 426 R~LkePLip~~~~rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~--nlA~ifg-- 500 (604)
T KOG3564|consen 426 RNLKEPLIPFRLRRDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVA--NLARIFG-- 500 (604)
T ss_pred HhcccccccchHHHHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHH--HHHHHhc--
Confidence 99999999999999999999999999999999999999999999999999999999988 556666655 6777775
Q ss_pred cccCCCCC
Q psy8552 168 LPTFSSPP 175 (523)
Q Consensus 168 ~P~~~~pp 175 (523)
|++...+
T Consensus 501 -Ptivgh~ 507 (604)
T KOG3564|consen 501 -PTIVGHA 507 (604)
T ss_pred -chhhccC
Confidence 7776654
No 48
>KOG1450|consensus
Probab=99.89 E-value=4e-23 Score=216.16 Aligned_cols=157 Identities=20% Similarity=0.295 Sum_probs=140.8
Q ss_pred CCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC---CCCHHHHHHH
Q psy8552 7 NLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS---KLEPALLAIM 82 (523)
Q Consensus 7 ~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~---~~d~~~va~l 82 (523)
-+|...+++++..||.+|.+|++.|+.+ |++.+||||++++ ..|.+|+.++|.+.. .++. ..|+|+|+++
T Consensus 459 s~Lealc~rE~~~vP~~V~~c~~~IE~~-----GLd~~GiYRVsgnl~~Vnklr~~~d~d~~-l~l~~~~~~dihai~ga 532 (650)
T KOG1450|consen 459 SPLEALCQRENGLVPKIVRLCIEHIEKF-----GLDSDGIYRVSGNLASVNKLREQSDQDNS-LDLADDRWDDIHAITGA 532 (650)
T ss_pred ccHHHHhhccCCCcchHHHHHHHHHhhh-----cccCCceeeecchHHHHHHHHHhcCcccc-ccccccchhHHHHHHHH
Confidence 3577788999999999999999999999 9999999999966 999999999996543 3433 3479999999
Q ss_pred HHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhh
Q psy8552 83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQ 162 (523)
Q Consensus 83 LK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~ 162 (523)
||+||||||+||++..+..+|..+.+......+..+...++..||..|+.||+||+.||++|.+|+..|+|+.. ++|+
T Consensus 533 lK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~--NLaI 610 (650)
T KOG1450|consen 533 LKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRH--NLAI 610 (650)
T ss_pred HHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhcccccccccc--ceEE
Confidence 99999999999999999999999999989999999999999999999999999999999999999999988766 6777
Q ss_pred hhccccccCCCC
Q psy8552 163 SFTFVLPTFSSP 174 (523)
Q Consensus 163 ~~~~v~P~~~~p 174 (523)
+|+ ||+..|
T Consensus 611 Vfg---pTl~~~ 619 (650)
T KOG1450|consen 611 VFG---PTLIKP 619 (650)
T ss_pred Eec---cccccc
Confidence 776 666653
No 49
>KOG2710|consensus
Probab=99.89 E-value=7.4e-23 Score=205.86 Aligned_cols=130 Identities=18% Similarity=0.283 Sum_probs=122.5
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCC----CCCCCCCCCHHHHHHHHHHHHhhcC
Q psy8552 17 STTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEI----KSYNFSKLEPALLAIMLKTYLKSLT 91 (523)
Q Consensus 17 ~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~----~~~~~~~~d~~~va~lLK~flr~Lp 91 (523)
-..||.+|.+|++||+++ |+.+.||||+.|+ .+|++|++.||++. ...+++++++|+||+|||.|||+||
T Consensus 91 ~~~IP~vv~~c~~~lk~~-----~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp 165 (412)
T KOG2710|consen 91 EGQIPRVVAKCGQYLKKN-----GLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLP 165 (412)
T ss_pred ceeCcHHHHHHHHHHHHc-----CceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCC
Confidence 446999999999999999 9999999999955 99999999999983 4467788899999999999999999
Q ss_pred CCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8552 92 EPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYAR 151 (523)
Q Consensus 92 ePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n 151 (523)
+||||.++|+.|+..+....+.+++..++.++..||..|+.+|.+|+.||+.++.+++.|
T Consensus 166 ~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~ 225 (412)
T KOG2710|consen 166 DPLLPLELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDN 225 (412)
T ss_pred cccCCHHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccc
Confidence 999999999999999999888899999999999999999999999999999999999888
No 50
>KOG4278|consensus
Probab=99.88 E-value=2.9e-23 Score=212.64 Aligned_cols=168 Identities=21% Similarity=0.331 Sum_probs=146.8
Q ss_pred CCcCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHH
Q psy8552 207 PETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVV 285 (523)
Q Consensus 207 ~~~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~ 285 (523)
....+|+.+.||||.+||.+||.+|....+|+||||+|++.+|.|+||+|+.|+|.||+|.. .+|+.|+.....|.+|.
T Consensus 144 tPvNSLeKhsWYHGpvSRsaaEy~LsSgInGSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~dgK~yvt~EsrF~TLa 223 (1157)
T KOG4278|consen 144 TPVNSLEKHSWYHGPVSRSAAEYILSSGINGSFLVRESESSPGQYSISLRYEGRVYHYRINTDNDGKMYVTQESRFRTLA 223 (1157)
T ss_pred ccccchhhcccccCccccchhhhhhhcCcccceEEeeccCCCcceeEEEEecceEEEEEeeccCCccEEEeehhhhhHHH
Confidence 44788999999999999999999999999999999999999999999999999999999996 68888888888999999
Q ss_pred HHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCccccccc-----ccCccc--------hhHHHHH
Q psy8552 286 ELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTF-----SEPFKF--------TSVVELI 352 (523)
Q Consensus 286 ~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~--------~~~~~av 352 (523)
|||+|+.+..+ ||.+.|.+|.++.....+.. ..-+.++|++.+.+++. .|+||+ -...|||
T Consensus 224 ELVHHHStvAD-----GLittLhYPApK~nKptvyg-vSPn~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAV 297 (1157)
T KOG4278|consen 224 ELVHHHSTVAD-----GLITTLHYPAPKKNKPTVYG-VSPNADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAV 297 (1157)
T ss_pred HHHhhcccccc-----ceeEeeeccCccCCCCceee-ecCCcchhhccchheeeeeccCCCcccceeeeeeeccceeeeh
Confidence 99999999885 89999999999865555432 23445899988877766 667887 4668999
Q ss_pred Hhhcccch--hhhhhhhchhcccccc-cccccc
Q psy8552 353 NYYKHESL--SQYNSTLDTRLLYPVS-RFSSDV 382 (523)
Q Consensus 353 k~~~~~~l--~~~~~e~~ar~m~~l~-~~~~~l 382 (523)
|+++.+.| ++|++| |-+|+.++ ||++++
T Consensus 298 KtLKEDtMeveEFLkE--AAvMKeikHpNLVqL 328 (1157)
T KOG4278|consen 298 KTLKEDTMEVEEFLKE--AAVMKEIKHPNLVQL 328 (1157)
T ss_pred hhhhhcchhHHHHHHH--HHHHHhhcCccHHHH
Confidence 99998866 569999 89999999 999999
No 51
>KOG1117|consensus
Probab=99.87 E-value=2.5e-22 Score=210.52 Aligned_cols=151 Identities=19% Similarity=0.314 Sum_probs=138.0
Q ss_pred CCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCC--CHHHHHHHH
Q psy8552 7 NLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKL--EPALLAIML 83 (523)
Q Consensus 7 ~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~--d~~~va~lL 83 (523)
+.|+.+ +.+++.||+||.+||.|+.++ ||.+|||||.+|. .++..|.+.|-+++..+.+... .+.+|+++|
T Consensus 715 t~Lqeq-qLs~~dIPvIVd~CI~FVTqy-----Gl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvL 788 (1186)
T KOG1117|consen 715 TALQEQ-QLSKNDIPVIVDSCIAFVTQY-----GLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVL 788 (1186)
T ss_pred chhhhh-hccCCCCcEehHHHHHHHHHh-----CccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHH
Confidence 345555 567889999999999999999 8999999999966 9999999999998876666655 488999999
Q ss_pred HHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhh
Q psy8552 84 KTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQS 163 (523)
Q Consensus 84 K~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~ 163 (523)
|+|||+|++||+|.++|..|++++..+++++++..+..+|..||..||.||+.||.||++|..++..|+|+.. ++|.+
T Consensus 789 k~FlrdlddpLft~~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvh--NLAlV 866 (1186)
T KOG1117|consen 789 KRFLRDLDDPLFTKELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVH--NLALV 866 (1186)
T ss_pred HHHHHhCCccccchhhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998877 77777
Q ss_pred hc
Q psy8552 164 FT 165 (523)
Q Consensus 164 ~~ 165 (523)
|+
T Consensus 867 Fa 868 (1186)
T KOG1117|consen 867 FA 868 (1186)
T ss_pred hh
Confidence 76
No 52
>KOG2996|consensus
Probab=99.85 E-value=7.3e-22 Score=199.58 Aligned_cols=178 Identities=22% Similarity=0.344 Sum_probs=146.3
Q ss_pred cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHH
Q psy8552 209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELI 288 (523)
Q Consensus 209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV 288 (523)
...+..++||.|.|-|..||..|+++++|+||||.+....+.|.+|+++++.|+|++|...+|.++|.+...|+|+.|||
T Consensus 679 ~~d~s~~~WyaG~MERaqaes~Lk~~~ngT~LVR~r~kea~e~AISikynnevKHikI~~~dg~~~i~E~k~F~sl~ELV 758 (865)
T KOG2996|consen 679 PTDYSEFPWYAGEMERAQAESTLKNRPNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETNDGKVHITEDKKFNSLVELV 758 (865)
T ss_pred ccchhhhhhhcchHhhhhhhhHhhcCCCceEEEEecccchhheeEEEEeccccceEEEEecCCeEEechhhhhhhHHHHH
Confidence 34566789999999999999999999999999999987788999999999999999999999999999999999999999
Q ss_pred HHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcccchhhhhhhhc
Q psy8552 289 NYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLD 368 (523)
Q Consensus 289 ~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~~~l~~~~~e~~ 368 (523)
+||+.+++......|.+.|+.|+..+...... ........+.-+...++.+.+|.+.
T Consensus 759 eyYq~~sLke~Fk~LDTtLk~Pyke~e~sa~~-~~~~~~~sv~s~~~~g~AvarYdf~---------------------- 815 (865)
T KOG2996|consen 759 EYYQSHSLKEIFKALDTTLKFPYKEPEHSAGQ-RGNRAGNSVLSPKVVGTAVARYDFC---------------------- 815 (865)
T ss_pred HHHHhccHHHHHHHhhhhhcCCCcChhhhhhh-ccccccccccCcceeeeeeeccccC----------------------
Confidence 99999999888888999999999876655433 0111222333445555556666553
Q ss_pred hhcccccc---cccccc--ccccccchhHHHhhhhhcccccccccCCC
Q psy8552 369 TRLLYPVS---RFSSDV--DADIHSNDVDKYINLKIAFTNLSGAVAST 411 (523)
Q Consensus 369 ar~m~~l~---~~~~~l--~k~~~~~w~~~r~~~~~~~g~~p~~~~~~ 411 (523)
||.|+.|+ .|++++ ....+..||+++++. ..|++|++|+.+
T Consensus 816 ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevng--rvGwFPstYVee 861 (865)
T KOG2996|consen 816 ARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNG--RVGWFPSTYVEE 861 (865)
T ss_pred CCchhhcccccCCEEEEehhccccCceecceecC--cccccccccccc
Confidence 57788887 799999 456678999998876 689999999765
No 53
>KOG1451|consensus
Probab=99.85 E-value=1.4e-20 Score=190.63 Aligned_cols=131 Identities=21% Similarity=0.233 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHhccCCCCCCCccceEEecC-ChhHHHHHHHHHhCC----CCCCCC-CCCCHHHHHHHHHHHHhhcCCCC
Q psy8552 21 PFKSDNLKAASEHYSKPDCGLSAANLFEPG-NASQVAELFHAYSGE----IKSYNF-SKLEPALLAIMLKTYLKSLTEPL 94 (523)
Q Consensus 21 P~vv~~~i~~l~~~~~~~~Gl~~eGifR~~-~~~~v~~l~~~~~~~----~~~~~~-~~~d~~~va~lLK~flr~LpePl 94 (523)
=.+|++||..|+.+ |++++|+||.. .+++|++|...+-.. +...+. +++|+.+|.+.||.|||.|||||
T Consensus 389 F~fvrkCI~i~Et~-----GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPL 463 (812)
T KOG1451|consen 389 FEFVRKCIDILETS-----GIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPL 463 (812)
T ss_pred HHHHHHHHHHHHhc-----CcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchh
Confidence 46899999999999 78888899999 669999999876442 122333 67899999999999999999999
Q ss_pred CChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy8552 95 IPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREP 156 (523)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~ 156 (523)
++++++..||.|++..|..-|+.+++.++.+||+.||.+|.-||.||.+|+.|+.+|.|+..
T Consensus 464 MTY~LHk~FI~AAKsdnq~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVS 525 (812)
T KOG1451|consen 464 MTYELHKVFINAAKSDNQTYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVS 525 (812)
T ss_pred hHHHHHHHHHHHHhccchhhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999998888766
No 54
>KOG4406|consensus
Probab=99.84 E-value=7.6e-21 Score=186.94 Aligned_cols=160 Identities=20% Similarity=0.278 Sum_probs=136.1
Q ss_pred CCCCcccccC--CCCCCCCHHHHHHHHHHhccCCCCCC-CccceEEecC-ChhHHHHHHHHHhCCCCCCCCCCCC-HHHH
Q psy8552 5 APNLLNKTDN--VSSTTSPFKSDNLKAASEHYSKPDCG-LSAANLFEPG-NASQVAELFHAYSGEIKSYNFSKLE-PALL 79 (523)
Q Consensus 5 ~p~~L~~~~~--~~~~~vP~vv~~~i~~l~~~~~~~~G-l~~eGifR~~-~~~~v~~l~~~~~~~~~~~~~~~~d-~~~v 79 (523)
+..+|.-... .++..||.+|..|+++|.++ | +.+||+||.| +.+.++++++.+++|+. ++++.+. +|..
T Consensus 254 FgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~-----~kl~tEG~FRrS~s~~~i~~~q~~~n~G~p-Vdle~~~~~h~~ 327 (467)
T KOG4406|consen 254 FGVPLQFIPEKNPEGESIPPIVRSTVEYLQAH-----GKLTTEGLFRRSASRSPIREVQELYNTGEP-VDLEVYKDLHAP 327 (467)
T ss_pred cCccHHHhcccCcccCCCCcHHHHHhhhhhcc-----ceecccceeccccCccchHHHHHHhcCCCc-ccHHHhccchhh
Confidence 3444444333 35889999999999999999 7 9999999999 44999999999999997 7998885 9999
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcc
Q psy8552 80 AIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQD-FPAHHFSALRYLMAHLARMCALQYARGVREPPT 158 (523)
Q Consensus 80 a~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~ 158 (523)
|.+||.|||+||+||++.++|+.+.... ..+..++....+.+++. ||+.|+.++++++.||.+|++++.+|+|+.+
T Consensus 328 avllKtF~R~LpePL~t~~~y~~lt~~~-~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~s-- 404 (467)
T KOG4406|consen 328 AVLLKTFLRSLPEPLLTFRLYESLTGFS-NVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTAS-- 404 (467)
T ss_pred HHHHHHHHhcCCcccchhhhhhhhhccc-cchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccc--
Confidence 9999999999999999999999887665 44667888889999997 9999999999999999999999999998875
Q ss_pred chhhhhc--cccccCCC
Q psy8552 159 ILIQSFT--FVLPTFSS 173 (523)
Q Consensus 159 ~l~~~~~--~v~P~~~~ 173 (523)
++|.+|+ ++||..++
T Consensus 405 NLa~vfGpnl~w~~~~s 421 (467)
T KOG4406|consen 405 NLAVVFGPNLLWAQDES 421 (467)
T ss_pred cceeeeccccccccccc
Confidence 6666666 44555433
No 55
>KOG1453|consensus
Probab=99.83 E-value=1.6e-20 Score=211.64 Aligned_cols=159 Identities=24% Similarity=0.361 Sum_probs=140.7
Q ss_pred CCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Q psy8552 7 NLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKT 85 (523)
Q Consensus 7 ~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~ 85 (523)
..|..........||.++.+|+.+|+.| |+.+|||||++|. .+++.|.+.|+.+...+.+.+.|+|+++++||+
T Consensus 605 ~~l~~~~~~e~~~vP~i~~~c~~~ie~~-----~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~ 679 (918)
T KOG1453|consen 605 VSLSELARYEPSTVPFILKKCLREIEAH-----LLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKL 679 (918)
T ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHh-----hhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHH
Confidence 3345555667889999999999999999 9999999999965 889999999999886678889999999999999
Q ss_pred HHhhcCCCCCChhhHHHHHHHhcC-CChH-----HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc
Q psy8552 86 YLKSLTEPLIPYVYYEKFVSLLSG-SNDR-----HIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTI 159 (523)
Q Consensus 86 flr~LpePli~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~ 159 (523)
|||+||+|||++.+|+.|+.+.+. ...+ +.+..+..++..||+.|+++|++|+.||.+|+.++..|+|+.. +
T Consensus 680 yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~--n 757 (918)
T KOG1453|consen 680 YLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPK--N 757 (918)
T ss_pred HHHhccccccccchHHHHHhhhccccccccccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCC--C
Confidence 999999999999999999999987 3333 5899999999999999999999999999999999999998877 6
Q ss_pred hhhhhccccccCCCCC
Q psy8552 160 LIQSFTFVLPTFSSPP 175 (523)
Q Consensus 160 l~~~~~~v~P~~~~pp 175 (523)
++.+|+ |++.+||
T Consensus 758 laivF~---Ptllr~~ 770 (918)
T KOG1453|consen 758 LAIVFA---PTLLRPP 770 (918)
T ss_pred cccccc---CcccCCC
Confidence 666675 7776664
No 56
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=99.83 E-value=4.7e-20 Score=152.47 Aligned_cols=93 Identities=38% Similarity=0.665 Sum_probs=83.5
Q ss_pred CccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCC-CCccCCHHHHHHHHhhC
Q psy8552 216 EWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSE-PFKFTSVVELINYYKHE 294 (523)
Q Consensus 216 ~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~-~~~F~sl~~LV~~y~~~ 294 (523)
+||||.|+|++||++|.+.++|+||||.|++.++.|+||++.+++++|++|...++++++.. ...|+||.+||+||+.+
T Consensus 1 ~w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~f~sl~eLv~~y~~~ 80 (94)
T cd00173 1 PWYHGPISREEAEELLKKKPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDGYYLLGEGRSFPSLPELIEHYQKN 80 (94)
T ss_pred CccccCCCHHHHHHHHhcCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCCeEEecCCCccCCHHHHHHHHhhC
Confidence 69999999999999999888999999999977899999999999999999998767666654 78999999999999998
Q ss_pred CcccCCCCcceeecccc
Q psy8552 295 SLSQYNSTLDTRLLYPV 311 (523)
Q Consensus 295 ~~~~~~~~l~~~L~~p~ 311 (523)
++ ..++++.|+.|+
T Consensus 81 ~~---~~~~~~~L~~p~ 94 (94)
T cd00173 81 PL---SDGLGVKLRYPV 94 (94)
T ss_pred cc---CCCcccEeCCcC
Confidence 86 346788998885
No 57
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=99.82 E-value=1.2e-19 Score=146.83 Aligned_cols=82 Identities=38% Similarity=0.696 Sum_probs=76.2
Q ss_pred CCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeC-CeEEeCCCCccCCHHHHHHHHhh
Q psy8552 215 AEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRN-GRYGFSEPFKFTSVVELINYYKH 293 (523)
Q Consensus 215 ~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~-~~~~~~~~~~F~sl~~LV~~y~~ 293 (523)
++||||.|+|++||++|.+.++|+||||.|++.++.|+||++.++.++||+|...+ |.|++.+...|+||.+||+||+.
T Consensus 1 ~~w~~g~i~r~~Ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~~~~l~~~~~F~sl~eLI~~y~~ 80 (84)
T smart00252 1 QPWYHGFISREEAEKLLKNEGDGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDGKFYLDGGRKFPSLVELVEHYQK 80 (84)
T ss_pred CCeecccCCHHHHHHHHhcCCCcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCCcEEECCCCccCCHHHHHHHHhh
Confidence 48999999999999999998899999999998889999999999999999999865 78999878999999999999998
Q ss_pred CCc
Q psy8552 294 ESL 296 (523)
Q Consensus 294 ~~~ 296 (523)
+++
T Consensus 81 ~~~ 83 (84)
T smart00252 81 NSL 83 (84)
T ss_pred CCC
Confidence 764
No 58
>KOG0197|consensus
Probab=99.81 E-value=5.4e-20 Score=188.08 Aligned_cols=168 Identities=26% Similarity=0.399 Sum_probs=139.6
Q ss_pred CCcCCCCCCCccccCCCHHHHHHHhcCC--CCceEEEEcCCCCCCcEEEEEEECC------eeEEEEEEE-eCCeEE--e
Q psy8552 207 PETNSLRDAEWYWGDISRDDVNDKLADT--ADGTFLVRDTSTKNGEYTLTLRKGG------TNKLIKIFH-RNGRYG--F 275 (523)
Q Consensus 207 ~~~~~l~~~~wyhg~isr~~Ae~lL~~~--~~G~FLVR~s~~~~g~f~LSv~~~~------~v~h~~I~~-~~~~~~--~ 275 (523)
+...+++.++||+|.|||++||+.|... ..|+||||+|++.+|+|+||++... .+.||+|.. ++|+++ +
T Consensus 73 ~~~~~l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~~~~~~~ 152 (468)
T KOG0197|consen 73 PAFIKLSDEPWFFGKISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGGGLYPYI 152 (468)
T ss_pred CCccccccCCchhccccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCCCeecCC
Confidence 3357788999999999999999877654 5599999999999999999999655 899999997 566677 8
Q ss_pred CCCCccCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCccccccc-----ccCccc-----
Q psy8552 276 SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTF-----SEPFKF----- 345 (523)
Q Consensus 276 ~~~~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~----- 345 (523)
.....|+++.+||+||+.++. +++..|..|+....+..+. ......+.|++++....+ .|+||+
T Consensus 153 ~~~~~F~~l~~lv~~~~~~~~-----gl~~~l~~p~~~~~~~~p~-~~~~~~d~wei~r~~l~l~~~LG~G~FG~V~~g~ 226 (468)
T KOG0197|consen 153 DERELFSSLQQLVNYYSKNAD-----GLCTRLRDPCSKQGHTKPQ-TPDLARDPWEIPREELKLIRELGSGQFGEVWLGK 226 (468)
T ss_pred CHHHhhhhHHHHHhhhhccCc-----chhhcccCchhccCCCCCC-CCccccCCeeecHHHHHHHHHhcCCccceEEEEE
Confidence 888889999999999999985 8899999999875433222 123337889999987777 778888
Q ss_pred --hhHHHHHHhhcccchhh--hhhhhchhcccccc-cccccc
Q psy8552 346 --TSVVELINYYKHESLSQ--YNSTLDTRLLYPVS-RFSSDV 382 (523)
Q Consensus 346 --~~~~~avk~~~~~~l~~--~~~e~~ar~m~~l~-~~~~~l 382 (523)
....||+|+++..+|.. |.+| |.+|++|+ ++++++
T Consensus 227 ~~~~~~vavk~ik~~~m~~~~f~~E--a~iMk~L~H~~lV~l 266 (468)
T KOG0197|consen 227 WNGSTKVAVKTIKEGSMSPEAFLRE--AQIMKKLRHEKLVKL 266 (468)
T ss_pred EcCCCcccceEEeccccChhHHHHH--HHHHHhCcccCeEEE
Confidence 45589999999877753 8888 89999999 999999
No 59
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=99.79 E-value=6.4e-19 Score=145.70 Aligned_cols=91 Identities=42% Similarity=0.710 Sum_probs=84.3
Q ss_pred cccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhC
Q psy8552 420 TWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAAN 496 (523)
Q Consensus 420 ~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~ 496 (523)
+||| .|+|++||++|+++++|+||||.|. ++.|+||++.+++++||+|...++++++......|+||.|||+||+.+
T Consensus 1 ~w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~f~sl~eLv~~y~~~ 80 (94)
T cd00173 1 PWYHGPISREEAEELLKKKPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDGYYLLGEGRSFPSLPELIEHYQKN 80 (94)
T ss_pred CccccCCCHHHHHHHHhcCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCCeEEecCCCccCCHHHHHHHHhhC
Confidence 6999 9999999999999889999999998 899999999999999999999998888876567999999999999999
Q ss_pred CccccCCccceeecccc
Q psy8552 497 SLEEHNDDLKTTLAYPV 513 (523)
Q Consensus 497 ~l~~~~~~l~~~L~~pv 513 (523)
++ .+++++.|+.||
T Consensus 81 ~~---~~~~~~~L~~p~ 94 (94)
T cd00173 81 PL---SDGLGVKLRYPV 94 (94)
T ss_pred cc---CCCcccEeCCcC
Confidence 87 377899999986
No 60
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=99.79 E-value=3.2e-19 Score=141.77 Aligned_cols=75 Identities=39% Similarity=0.657 Sum_probs=70.8
Q ss_pred ccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCe-EEeCCCCccCCHHHHHHHH
Q psy8552 217 WYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGR-YGFSEPFKFTSVVELINYY 291 (523)
Q Consensus 217 wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~-~~~~~~~~F~sl~~LV~~y 291 (523)
||||.|+|++||++|++ .++|+||||.|.+.+|.|+||++.+++++|++|.+.+++ |++.+...|+||.+||+||
T Consensus 1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y 77 (77)
T PF00017_consen 1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENGGYFLSDGKKFPSLSDLVEHY 77 (77)
T ss_dssp TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTSEEESSTSSEBSSHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCceEEccCCCcCCCHHHHHHhC
Confidence 99999999999999999 899999999999888999999999999999999986555 8888888999999999998
No 61
>KOG4792|consensus
Probab=99.77 E-value=1.3e-18 Score=157.50 Aligned_cols=164 Identities=20% Similarity=0.274 Sum_probs=120.5
Q ss_pred cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEe--------CCeEEeCCCCc
Q psy8552 209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR--------NGRYGFSEPFK 280 (523)
Q Consensus 209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~--------~~~~~~~~~~~ 280 (523)
.++.+...||+|.|||++|.++|+++..|.||||+|++.+|+|+|||+-+.+|.||.|... ...|.|++ ..
T Consensus 5 FD~~er~swYfg~mSRqeA~~lL~~~r~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIgd-Q~ 83 (293)
T KOG4792|consen 5 FDSSERSSWYFGPMSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIGD-QE 83 (293)
T ss_pred cChhhccceecCcccHHHHHHHhcCcceeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeeecc-cc
Confidence 3445678999999999999999999889999999999999999999999999999999861 12677775 88
Q ss_pred cCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCccccccccc-CccchhHHHHHHhhcccc
Q psy8552 281 FTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSE-PFKFTSVVELINYYKHES 359 (523)
Q Consensus 281 F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~avk~~~~~~ 359 (523)
|++|..|++||+-+-+. .+.|+.|.+|.... ..+++.....++++ .|.+.. +
T Consensus 84 Fd~lPaLL~fykihyLd------tttLi~p~~r~~~~----------~~~~~~~~~~~~vr~~fdF~G----------~- 136 (293)
T KOG4792|consen 84 FDSLPALLEFYKIHYLD------TTTLIEPAKRSRQG----------SGVILRQEEAEYVRALFDFNG----------N- 136 (293)
T ss_pred ccchHHHHhheeEeeec------cccccccccccccc----------cCcccchhhhhheeeeeccCC----------C-
Confidence 99999999999998873 46788888874331 12233333334433 333311 0
Q ss_pred hhhhhhhhchhcccccc-ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552 360 LSQYNSTLDTRLLYPVS-RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS 410 (523)
Q Consensus 360 l~~~~~e~~ar~m~~l~-~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~ 410 (523)
.| .. .+++ .++..+++..+..||.+|... +..|.+|.+|++
T Consensus 137 -----de---eD-LPFkkGeiL~I~~K~eeqWW~Arns~-Gk~GmIPvpYVe 178 (293)
T KOG4792|consen 137 -----DE---ED-LPFKKGEILRIRDKPEEQWWNARNSE-GKRGMIPVPYVE 178 (293)
T ss_pred -----cc---cc-CCcccCcEEEEecCcHHHhhhhhccC-CcccceechHHH
Confidence 00 00 1222 567777777888999988654 578999988854
No 62
>KOG4278|consensus
Probab=99.75 E-value=1.9e-18 Score=177.67 Aligned_cols=124 Identities=25% Similarity=0.361 Sum_probs=111.4
Q ss_pred ccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCe
Q psy8552 385 DIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGA 461 (523)
Q Consensus 385 ~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~ 461 (523)
+.+.+|-.+|... .+|++|+||+.+.- +++...||| .++|..||.+|..--+|+||||+|+ +|.|+||++++|+
T Consensus 121 N~NgEWcEartKN--GqGWVPSNyItPvN-SLeKhsWYHGpvSRsaaEy~LsSgInGSFLVRESEsSpgQ~sISlRyeGR 197 (1157)
T KOG4278|consen 121 NKNGEWCEARTKN--GQGWVPSNYITPVN-SLEKHSWYHGPVSRSAAEYILSSGINGSFLVRESESSPGQYSISLRYEGR 197 (1157)
T ss_pred cCCCcceeecccC--CCcccccccccccc-chhhcccccCccccchhhhhhhcCcccceEEeeccCCCcceeEEEEecce
Confidence 4566888888633 45999999999877 899999999 9999999999986669999999999 9999999999999
Q ss_pred eEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552 462 PKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516 (523)
Q Consensus 462 v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~ 516 (523)
|+||+|..+.+|..|+.....|.+|.|||+||+... |||.|+|.||.++-
T Consensus 198 VyHYRINt~~dgK~yvt~EsrF~TLaELVHHHStvA-----DGLittLhYPApK~ 247 (1157)
T KOG4278|consen 198 VYHYRINTDNDGKMYVTQESRFRTLAELVHHHSTVA-----DGLITTLHYPAPKK 247 (1157)
T ss_pred EEEEEeeccCCccEEEeehhhhhHHHHHHhhccccc-----cceeEeeeccCccC
Confidence 999999999988877777789999999999999984 99999999999874
No 63
>KOG0197|consensus
Probab=99.74 E-value=3.8e-18 Score=174.59 Aligned_cols=132 Identities=22% Similarity=0.263 Sum_probs=114.3
Q ss_pred cccccccccchhHHHhhhhhcccccccccCCCC-----CCCCCCCcccc-cCCHHHHHHHhcCC--CCCeEEeecCC--C
Q psy8552 380 SDVDADIHSNDVDKYINLKIAFTNLSGAVASTV-----DFESGEKTWLV-RMSRAQAEALLSGR--PDGTFLIRPST--T 449 (523)
Q Consensus 380 ~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~-----~~~~~~~~W~~-~isr~~Ae~~L~~~--~~G~FLvR~s~--~ 449 (523)
..+..+.+.+||.+|..+....||+|+|+++.. +..+..++||+ .|+|.+||+.|... ..|+||||+|+ +
T Consensus 37 ~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~~~~~~~~l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~ 116 (468)
T KOG0197|consen 37 LILLETTNGDWWRARSLQLGQEGYIPSNYVARNRGSPAFIKLSDEPWFFGKISREEAERQLLAPENKEGAFLVRESESDK 116 (468)
T ss_pred EEeeccCChhHHHHHHhhcCCCCcCcCceeeccccCCCccccccCCchhccccHHHHHHhhcCCCCCccceeeecccCCc
Confidence 445677789999999999999999999998754 12689999999 99999999766543 46999999997 9
Q ss_pred CceEEEEEECC------eeEEEEEEEeCCcEEE--ecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552 450 GQYALSIVCSG------APKHCLVYETERGFGF--AEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516 (523)
Q Consensus 450 ~~~~Ls~~~~~------~v~h~~I~~~~~~~~~--~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~ 516 (523)
|.|+||++... .|+||+|...+++.++ ......|++|.+||+||+.++ +|+++.|+.||.+.
T Consensus 117 g~yslsv~~~~~~~~~~~v~hyri~~~~~~~~~~~~~~~~~F~~l~~lv~~~~~~~-----~gl~~~l~~p~~~~ 186 (468)
T KOG0197|consen 117 GDYSLSVREGDSGGLGAKVKHYRIRQLDGGGLYPYIDERELFSSLQQLVNYYSKNA-----DGLCTRLRDPCSKQ 186 (468)
T ss_pred CCeeEEEEeccccCCccceeeeeeeEcCCCCeecCCCHHHhhhhHHHHHhhhhccC-----cchhhcccCchhcc
Confidence 99999999865 9999999999887555 666689999999999999996 99999999999873
No 64
>KOG0194|consensus
Probab=99.74 E-value=4.6e-18 Score=176.41 Aligned_cols=153 Identities=25% Similarity=0.353 Sum_probs=124.2
Q ss_pred CCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCc---E-EEEEEEC--CeeEEEEEEEeCCeEEeCCCCccCC
Q psy8552 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGE---Y-TLTLRKG--GTNKLIKIFHRNGRYGFSEPFKFTS 283 (523)
Q Consensus 210 ~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~---f-~LSv~~~--~~v~h~~I~~~~~~~~~~~~~~F~s 283 (523)
..+..++||||.|.|++|+.+|.+ +|+||||.|+..+|. + +||+... .+++||.|...+++|++.....|+|
T Consensus 44 ~~~~~~~~yHG~l~red~~~lL~~--~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~~~~~~~~~F~s 121 (474)
T KOG0194|consen 44 KDLRELPYYHGLLPREDAEKLLKN--DGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNLFFFEGLRKFPT 121 (474)
T ss_pred hHhhcCccccccccHhHHHHHhCC--CCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCeeEEeccccCCc
Confidence 334558999999999999999999 999999999986553 4 9999985 7899999999777888888899999
Q ss_pred HHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCccccccc-----ccCccc----------h--
Q psy8552 284 VVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTF-----SEPFKF----------T-- 346 (523)
Q Consensus 284 l~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~----------~-- 346 (523)
+.+||.||+.+..... +....|+.|+.+. .|++.+..+++ .|.||+ .
T Consensus 122 i~~li~~~~~~~~~~~--~~~~~L~~PI~r~--------------~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~ 185 (474)
T KOG0194|consen 122 ISELVNYYKFSKLEIT--GKNFFLKRPIPRQ--------------KWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFK 185 (474)
T ss_pred HHHHHHHHHhccccee--ccceeeccccccc--------------ccEEeccCccccceeecccccEEEEEEEEecCCce
Confidence 9999999999887653 4455799999984 45555555544 667777 1
Q ss_pred hHHHHHHhhcc------cchhhhhhhhchhcccccc-cccccc
Q psy8552 347 SVVELINYYKH------ESLSQYNSTLDTRLLYPVS-RFSSDV 382 (523)
Q Consensus 347 ~~~~avk~~~~------~~l~~~~~e~~ar~m~~l~-~~~~~l 382 (523)
...||+|+++. +.+.++|+| ||+|+.|+ +|++++
T Consensus 186 ~~~VAvK~~k~~~~~~~~~~~e~m~E--ArvMr~l~H~NVVr~ 226 (474)
T KOG0194|consen 186 VVPVAVKTTKGSSELTKEQIKEFMKE--ARVMRQLNHPNVVRF 226 (474)
T ss_pred eeeeEEEeecccccccHHHHHHHHHH--HHHHHhCCCCCEEEE
Confidence 12289998884 356669999 99999999 999999
No 65
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=99.74 E-value=1.8e-17 Score=133.93 Aligned_cols=78 Identities=41% Similarity=0.634 Sum_probs=70.6
Q ss_pred Ccccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCc-EEEecCCCCCCCHHHHHHHHh
Q psy8552 419 KTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERG-FGFAEPFNIYPSLGALVLHYA 494 (523)
Q Consensus 419 ~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~-~~~~~~~~~F~sl~~LV~~y~ 494 (523)
++||| .|+|++||++|.++++|+||||.|+ ++.|+||++.++.++||+|...+++ +.+.+ ...|+||.+||+||+
T Consensus 1 ~~w~~g~i~r~~Ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~~~~l~~-~~~F~sl~eLI~~y~ 79 (84)
T smart00252 1 QPWYHGFISREEAEKLLKNEGDGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDGKFYLDG-GRKFPSLVELVEHYQ 79 (84)
T ss_pred CCeecccCCHHHHHHHHhcCCCcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCCcEEECC-CCccCCHHHHHHHHh
Confidence 48999 9999999999998889999999998 8999999999999999999998844 55544 579999999999999
Q ss_pred hCC
Q psy8552 495 ANS 497 (523)
Q Consensus 495 ~~~ 497 (523)
.++
T Consensus 80 ~~~ 82 (84)
T smart00252 80 KNS 82 (84)
T ss_pred hCC
Confidence 986
No 66
>KOG4226|consensus
Probab=99.73 E-value=1.5e-17 Score=154.51 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=111.7
Q ss_pred ccccccc--cccccchhHHHhhhhhcccccccccCC----------------------CCC---CCCCCCcccc-cCCHH
Q psy8552 377 RFSSDVD--ADIHSNDVDKYINLKIAFTNLSGAVAS----------------------TVD---FESGEKTWLV-RMSRA 428 (523)
Q Consensus 377 ~~~~~l~--k~~~~~w~~~r~~~~~~~g~~p~~~~~----------------------~~~---~~~~~~~W~~-~isr~ 428 (523)
.+.++++ -..+++||++|..+ +..|.+|.||+. ..| ..+..++||+ +|+|.
T Consensus 213 Gerleivd~Pe~DPdWwkarn~~-G~vGLVPrNYv~vl~d~~~ts~~~~~s~~pq~sgn~p~~sg~~ag~~WYyG~itR~ 291 (379)
T KOG4226|consen 213 GERLEIVDKPENDPDWWKARNAR-GQVGLVPRNYVVVLSDGPSTSKALHPSHAPQISGNGPSSSGRFAGRPWYYGNITRH 291 (379)
T ss_pred CceeEeccCCCCCchHHhhcccC-CccceeecceEEEeccCccccccCCccccccccCCCCCccccccCCcceeccccHH
Confidence 3455553 24577999998766 478888877621 011 1256779999 99999
Q ss_pred HHHHHhcCCC-CCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCcc
Q psy8552 429 QAEALLSGRP-DGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDL 505 (523)
Q Consensus 429 ~Ae~~L~~~~-~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l 505 (523)
+||.+|.+.+ +|.||||+|+ +|.|++|++..++-+||++...++-+.+++ +.|.++.+||+||++.+|..+..|.
T Consensus 292 qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq~~d~~ycIGq--RkF~tmd~Lv~HY~kaPIfts~qgE 369 (379)
T KOG4226|consen 292 QAECALNEHGHEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQLVDNVYCIGQ--RKFHTMDELVEHYKKAPIFTSEQGE 369 (379)
T ss_pred HHHHHHhccCccCceEEecCCCCCcceeEEeeccCCCcceEEEEecceEEecc--ceeccHHHHHHhhhcCCceecCCCc
Confidence 9999998776 8999999999 999999999999999999999888777754 6999999999999999998888899
Q ss_pred ceeecccccC
Q psy8552 506 KTTLAYPVFA 515 (523)
Q Consensus 506 ~~~L~~pv~~ 515 (523)
...|..|.++
T Consensus 370 KLyLvr~Lpk 379 (379)
T KOG4226|consen 370 KLYLVRALPK 379 (379)
T ss_pred eEEEeccCCC
Confidence 9999887754
No 67
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=99.71 E-value=3.4e-17 Score=130.05 Aligned_cols=73 Identities=47% Similarity=0.744 Sum_probs=67.7
Q ss_pred ccc-cCCHHHHHHHhcC-CCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHH
Q psy8552 421 WLV-RMSRAQAEALLSG-RPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY 493 (523)
Q Consensus 421 W~~-~isr~~Ae~~L~~-~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y 493 (523)
||| .|+|++||++|++ .++|+||||.|. +|.|+||++.+++++||+|...+++.++......|+||.+||+||
T Consensus 1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y 77 (77)
T PF00017_consen 1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENGGYFLSDGKKFPSLSDLVEHY 77 (77)
T ss_dssp TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTSEEESSTSSEBSSHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCceEEccCCCcCCCHHHHHHhC
Confidence 999 9999999999998 779999999999 899999999999999999999999855555567899999999998
No 68
>KOG2996|consensus
Probab=99.68 E-value=3.3e-17 Score=166.13 Aligned_cols=139 Identities=28% Similarity=0.340 Sum_probs=120.1
Q ss_pred cccccc-ccccccchhHHHhhhhhcccccccccCCCCC----------CCCCCCcccc-cCCHHHHHHHhcCCCCCeEEe
Q psy8552 377 RFSSDV-DADIHSNDVDKYINLKIAFTNLSGAVASTVD----------FESGEKTWLV-RMSRAQAEALLSGRPDGTFLI 444 (523)
Q Consensus 377 ~~~~~l-~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~----------~~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLv 444 (523)
.+++.+ .-+.++.||.+|..++.+.|+.|++.+.++| +++...+||. .|.|.+||..|.+.++|+|||
T Consensus 632 gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vpr~~~~~~~d~s~~~WyaG~MERaqaes~Lk~~~ngT~LV 711 (865)
T KOG2996|consen 632 GDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVPRQQDYVPTDYSEFPWYAGEMERAQAESTLKNRPNGTYLV 711 (865)
T ss_pred CceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCCCCCCCCccchhhhhhhcchHhhhhhhhHhhcCCCceEEE
Confidence 356666 4567889999999999999999988755433 3556679999 999999999999999999999
Q ss_pred ecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552 445 RPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516 (523)
Q Consensus 445 R~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~ 516 (523)
|.+. .+.|+||+.+++.|+|.+|...+ |++.+.....|.|+.|||+||+.++|.+.-..|.++|+.|...+
T Consensus 712 R~r~kea~e~AISikynnevKHikI~~~d-g~~~i~E~k~F~sl~ELVeyYq~~sLke~Fk~LDTtLk~Pyke~ 784 (865)
T KOG2996|consen 712 RYRTKEAKEFAISIKYNNEVKHIKIETND-GKVHITEDKKFNSLVELVEYYQSHSLKEIFKALDTTLKFPYKEP 784 (865)
T ss_pred EecccchhheeEEEEeccccceEEEEecC-CeEEechhhhhhhHHHHHHHHHhccHHHHHHHhhhhhcCCCcCh
Confidence 9996 88999999999999999999985 55555556899999999999999999887888999999999743
No 69
>KOG0790|consensus
Probab=99.66 E-value=1.9e-16 Score=156.65 Aligned_cols=100 Identities=22% Similarity=0.489 Sum_probs=88.7
Q ss_pred CCCCccccCCCHHHHHHHhc-CCCCceEEEEcCCCCCCcEEEEEEECC---------eeEEEEEEEeCCeEEeCCCCccC
Q psy8552 213 RDAEWYWGDISRDDVNDKLA-DTADGTFLVRDTSTKNGEYTLTLRKGG---------TNKLIKIFHRNGRYGFSEPFKFT 282 (523)
Q Consensus 213 ~~~~wyhg~isr~~Ae~lL~-~~~~G~FLVR~s~~~~g~f~LSv~~~~---------~v~h~~I~~~~~~~~~~~~~~F~ 282 (523)
.++.||||.||..+||.||. +...|+||||+|.+.||+||||++.+. +|.|..|.+.+++|.++++..|+
T Consensus 108 tserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~~kydVGgge~F~ 187 (600)
T KOG0790|consen 108 TSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQEGKYDVGGGERFD 187 (600)
T ss_pred hhhhhhccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEEEEEecccccccCCccccc
Confidence 44569999999999999995 468999999999999999999999866 89999999999999999999999
Q ss_pred CHHHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552 283 SVVELINYYKHESLSQYNSTLDTRLLYPVSR 313 (523)
Q Consensus 283 sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~ 313 (523)
||.+||+||+.++..+ ..|-.+.|.+|+..
T Consensus 188 sltdLidhykknpmvE-t~gtvv~LrqP~na 217 (600)
T KOG0790|consen 188 SLTDLVEHYKKNPMVE-TLGTVVYLRQPLNA 217 (600)
T ss_pred hHHHHHHHhccCchhh-hcceeEEeeccccc
Confidence 9999999999999865 24556678888764
No 70
>KOG1452|consensus
Probab=99.66 E-value=1.3e-16 Score=151.47 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=128.9
Q ss_pred CcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCC---CCHHHHHHHH
Q psy8552 8 LLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSK---LEPALLAIML 83 (523)
Q Consensus 8 ~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~---~d~~~va~lL 83 (523)
.|+..++++...-|+++++|++.||++ |++.-|+|+++|+ .+-+-|++.|+.....+.+.. -|.++|++++
T Consensus 188 ~L~~lV~RE~~~~PIvlrR~~~EiEkR-----GvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~~ 262 (442)
T KOG1452|consen 188 SLSRLVQREPESPPIVLRRLYAEIEKR-----GVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGDS 262 (442)
T ss_pred hhHhHhhcCCCCCchHHHHHHHHHHhc-----ccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeeccc
Confidence 456667888999999999999999999 9999999999966 888889999998654334332 2788999999
Q ss_pred HHHHhhcCCCCCChhhHHHHHHHhc--CC-ChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccch
Q psy8552 84 KTYLKSLTEPLIPYVYYEKFVSLLS--GS-NDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTIL 160 (523)
Q Consensus 84 K~flr~LpePli~~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l 160 (523)
|.|||||||||++...++.-++++. .. |..-..+.+.+++.+|+..++++|-.++.||..|..++..|+|+.+ .+
T Consensus 263 kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~--~L 340 (442)
T KOG1452|consen 263 KDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPT--RL 340 (442)
T ss_pred HhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHH--HH
Confidence 9999999999999999999998876 33 4444667778999999999999999999999999998888877655 77
Q ss_pred hhhhccc
Q psy8552 161 IQSFTFV 167 (523)
Q Consensus 161 ~~~~~~v 167 (523)
+.+|++.
T Consensus 341 s~i~~P~ 347 (442)
T KOG1452|consen 341 SLIFAPL 347 (442)
T ss_pred HHHhhhh
Confidence 7778744
No 71
>KOG4226|consensus
Probab=99.66 E-value=6.6e-16 Score=143.60 Aligned_cols=101 Identities=25% Similarity=0.527 Sum_probs=88.4
Q ss_pred CCCCCCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHH
Q psy8552 211 SLRDAEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELIN 289 (523)
Q Consensus 211 ~l~~~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~ 289 (523)
.+...+||+|.|+|.+||.+|-. ..+|+||||+|++++|+|++|++..++.+||++...++.|+|+. ++|.++.+||+
T Consensus 277 ~~ag~~WYyG~itR~qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq~~d~~ycIGq-RkF~tmd~Lv~ 355 (379)
T KOG4226|consen 277 RFAGRPWYYGNITRHQAECALNEHGHEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQLVDNVYCIGQ-RKFHTMDELVE 355 (379)
T ss_pred cccCCcceeccccHHHHHHHHhccCccCceEEecCCCCCcceeEEeeccCCCcceEEEEecceEEecc-ceeccHHHHHH
Confidence 37789999999999999999954 58999999999999999999999999999999999999999885 99999999999
Q ss_pred HHhhCCcccCCCCcceeeccccc
Q psy8552 290 YYKHESLSQYNSTLDTRLLYPVS 312 (523)
Q Consensus 290 ~y~~~~~~~~~~~l~~~L~~p~~ 312 (523)
||++.++-....|-...|..+++
T Consensus 356 HY~kaPIfts~qgEKLyLvr~Lp 378 (379)
T KOG4226|consen 356 HYKKAPIFTSEQGEKLYLVRALP 378 (379)
T ss_pred hhhcCCceecCCCceEEEeccCC
Confidence 99998875444455566666654
No 72
>KOG4271|consensus
Probab=99.62 E-value=3.5e-16 Score=166.53 Aligned_cols=152 Identities=21% Similarity=0.330 Sum_probs=131.3
Q ss_pred CCCCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCC--HHHHH
Q psy8552 4 YAPNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLE--PALLA 80 (523)
Q Consensus 4 ~~p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d--~~~va 80 (523)
|..-+|.+ +..+...||.++.+|++||++. |+.+||+||++|+ ...++++++|.++-. +++...| +|++|
T Consensus 917 ~~~~~l~~-~~t~~k~ip~~~ekc~sfiedt-----g~~te~lyrv~gnkT~~eelrkqf~n~~~-~dl~s~d~~v~~va 989 (1100)
T KOG4271|consen 917 YFLTPLQD-AVTSEKPIPIFLEKCKSFIEDT-----GLSTEGLYRVSGNKTDLEELRKQFLNDHN-FDLSSMDTTVNVVA 989 (1100)
T ss_pred ccCCcccc-cccCCcccchHHHHHHHHHHhc-----cchhhhheecCCCCccHHHHHHHHHhhcc-cccccccccccccc
Confidence 33444433 3556788999999999999999 8999999999966 999999999988543 4665554 99999
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccch
Q psy8552 81 IMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTIL 160 (523)
Q Consensus 81 ~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l 160 (523)
+.+|.||..||+||+|+.++..+.++.++.|..+++..++..+..||+.|+.+++|++.||.+|+.....|.|+.+ ++
T Consensus 990 gAlksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~--~~ 1067 (1100)
T KOG4271|consen 990 GALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNN--NL 1067 (1100)
T ss_pred CcchhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhcccccccccccc--cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877776654 44
Q ss_pred hhhh
Q psy8552 161 IQSF 164 (523)
Q Consensus 161 ~~~~ 164 (523)
..+|
T Consensus 1068 ~i~~ 1071 (1100)
T KOG4271|consen 1068 SICF 1071 (1100)
T ss_pred cccc
Confidence 4455
No 73
>KOG4637|consensus
Probab=99.57 E-value=2.7e-15 Score=145.10 Aligned_cols=99 Identities=29% Similarity=0.547 Sum_probs=93.2
Q ss_pred CCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHH
Q psy8552 416 SGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH 492 (523)
Q Consensus 416 ~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~ 492 (523)
+...+||| +|+|.++...|.+++||+||||+-. +|.|+|+++.++..+-.+|...++.+.|.+ ...|+|+++||+|
T Consensus 20 L~~a~WYWgdisReev~~~L~d~PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgKyGF~d-~ltf~SVVelIn~ 98 (464)
T KOG4637|consen 20 LQDAEWYWGDISREEVNKKLRDQPDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGKYGFSD-PLTFNSVVELINH 98 (464)
T ss_pred hhhccccccccCHHHHHHHhcCCCCCcEEeeccccCCCceEEEEecCCccceeeeEEecCccCCCC-chhhHHHHHHHHH
Confidence 67789999 9999999999999999999999766 999999999999999999999998888875 4799999999999
Q ss_pred HhhCCccccCCccceeecccccC
Q psy8552 493 YAANSLEEHNDDLKTTLAYPVFA 515 (523)
Q Consensus 493 y~~~~l~~~~~~l~~~L~~pv~~ 515 (523)
|+..||.+.++.|.++|.+||.+
T Consensus 99 yr~~SL~~yN~~LDvrLlyPVs~ 121 (464)
T KOG4637|consen 99 YRNESLAQYNPKLDVRLLYPVSR 121 (464)
T ss_pred HhhhHHHhhCcccceeeechHHH
Confidence 99999999999999999999975
No 74
>KOG1264|consensus
Probab=99.54 E-value=6.5e-15 Score=154.55 Aligned_cols=100 Identities=29% Similarity=0.601 Sum_probs=84.9
Q ss_pred CCcCCCCCCCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHH
Q psy8552 207 PETNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVV 285 (523)
Q Consensus 207 ~~~~~l~~~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~ 285 (523)
+....+++++|||..++|++||++|+.- .||+||||.+ .....|+||++.+|+++|+||.+++..|.++ ...|.||.
T Consensus 640 Pqp~~He~k~W~~as~treqAE~mL~rvp~DGaFLiR~~-~~~nsy~iSfr~~gkikHcRi~rdGr~fvl~-t~~FesLv 717 (1267)
T KOG1264|consen 640 PQPNPHESKPWYHASLTREQAEDMLMRVPRDGAFLIRKR-EGSNSYAISFRARGKIKHCRINRDGRHFVLG-TSAFESLV 717 (1267)
T ss_pred CCCCcccCCccccccccHHHHHHHHhhCccCcceEEEec-cCCceEEEEEEEcCcEeEEEEccCceEEEec-cHHHHHHH
Confidence 4456788999999999999999999974 6799999944 4477899999999999999999865566555 47799999
Q ss_pred HHHHHHhhCCcccCCCCcceeecccccc
Q psy8552 286 ELINYYKHESLSQYNSTLDTRLLYPVSR 313 (523)
Q Consensus 286 ~LV~~y~~~~~~~~~~~l~~~L~~p~~~ 313 (523)
+||+||.++++. ..+.|.+|+..
T Consensus 718 ~lv~yY~k~~ly-----R~mkLr~PVne 740 (1267)
T KOG1264|consen 718 ELVSYYEKHPLY-----RKMKLRYPVNE 740 (1267)
T ss_pred HHHHHHhcChhh-----hcccccCcCCH
Confidence 999999999985 36788999874
No 75
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.49 E-value=2.2e-13 Score=125.85 Aligned_cols=138 Identities=19% Similarity=0.194 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHhccCCCCCCCccceE---EecC-ChhHHHHH-HHHHhCCCCCCCC--------CCCCHHHHHHHHHHH
Q psy8552 20 SPFKSDNLKAASEHYSKPDCGLSAANL---FEPG-NASQVAEL-FHAYSGEIKSYNF--------SKLEPALLAIMLKTY 86 (523)
Q Consensus 20 vP~vv~~~i~~l~~~~~~~~Gl~~eGi---fR~~-~~~~v~~l-~~~~~~~~~~~~~--------~~~d~~~va~lLK~f 86 (523)
|=.+|..|.++|+.+ |+++++| ||.+ +...++.+ +..|+.+...... ...|+|+|+++||.|
T Consensus 6 v~~l~~~~t~eLk~r-----g~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~ 80 (198)
T cd04401 6 VKGLIHNITEELKSR-----GLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWI 80 (198)
T ss_pred HHHHHHHHHHHHHhc-----ccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHH
Confidence 346789999999999 9999999 9999 55777777 6677766322222 236999999999999
Q ss_pred HhhcCCCCCCh-hhHHHHHHHhcCCChHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhh
Q psy8552 87 LKSLTEPLIPY-VYYEKFVSLLSGSNDRHIGSRLFALVQDF--PAHHFSALRYLMAHLARMCALQYARGVREPPTILIQS 163 (523)
Q Consensus 87 lr~LpePli~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L--p~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~ 163 (523)
||.||.++++. +.|..|...-+..+.. ..+++.++..+ |+.|..++..++.+|..|+.|+..|+|+.. .++.+
T Consensus 81 ~~rLP~~~v~~~~~Y~~F~~~E~~~~~p--~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~--kLs~~ 156 (198)
T cd04401 81 WSRLPGSKVIWWEVYEEFKARERRSNYP--ADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGR--KLSKM 156 (198)
T ss_pred HHHCCCCccCCHHHHHHHHHHHHhcCCc--HHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHh--HHHHH
Confidence 99999999999 9999999965432222 23788889887 899999999999999999999998887755 77788
Q ss_pred hcc
Q psy8552 164 FTF 166 (523)
Q Consensus 164 ~~~ 166 (523)
|++
T Consensus 157 fg~ 159 (198)
T cd04401 157 AGP 159 (198)
T ss_pred hhH
Confidence 773
No 76
>KOG4792|consensus
Probab=99.34 E-value=2.5e-12 Score=116.98 Aligned_cols=94 Identities=32% Similarity=0.492 Sum_probs=79.0
Q ss_pred CCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeC--------CcEEEecCCCCCC
Q psy8552 416 SGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETE--------RGFGFAEPFNIYP 484 (523)
Q Consensus 416 ~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~--------~~~~~~~~~~~F~ 484 (523)
.+...||+ .|||+||..+|+++..|.||||+|. +|.|+|||.-+.+|-||.|.... .++.++ ...|+
T Consensus 8 ~er~swYfg~mSRqeA~~lL~~~r~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIg--dQ~Fd 85 (293)
T KOG4792|consen 8 SERSSWYFGPMSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIG--DQEFD 85 (293)
T ss_pred hhccceecCcccHHHHHHHhcCcceeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeeec--ccccc
Confidence 45678999 9999999999998889999999998 99999999999999999999721 134443 36899
Q ss_pred CHHHHHHHHhhCCccccCCccceeecccccCCC
Q psy8552 485 SLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA 517 (523)
Q Consensus 485 sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~ 517 (523)
+|+.|++||+-+-|. .++|..|.++..
T Consensus 86 ~lPaLL~fykihyLd------tttLi~p~~r~~ 112 (293)
T KOG4792|consen 86 SLPALLEFYKIHYLD------TTTLIEPAKRSR 112 (293)
T ss_pred chHHHHhheeEeeec------cccccccccccc
Confidence 999999999998543 567888887753
No 77
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.28 E-value=2.1e-11 Score=113.74 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=108.8
Q ss_pred CCCCCCCCHHHHHHH--HHHhccCCCCCCCcc--ceEEecC-ChhHHHHHHHHHhCCCCC--CC--CCCCC--------H
Q psy8552 14 NVSSTTSPFKSDNLK--AASEHYSKPDCGLSA--ANLFEPG-NASQVAELFHAYSGEIKS--YN--FSKLE--------P 76 (523)
Q Consensus 14 ~~~~~~vP~vv~~~i--~~l~~~~~~~~Gl~~--eGifR~~-~~~~v~~l~~~~~~~~~~--~~--~~~~d--------~ 76 (523)
...+...|..+..-. +++..+ .++. .|+|+.+ ...-+.+.++.++..+.. .+ ...++ -
T Consensus 31 l~~~~~~p~~i~~~~~~~~~~~~-----~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~~~~~~e 105 (235)
T cd04405 31 LDPALVNPKHISYNMDPDVYTSN-----YLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHDMLSGFK 105 (235)
T ss_pred hcccCCCCcchhhcccccccccc-----cccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccccccchH
Confidence 345556666665544 444444 3444 6899999 459999999999887542 11 11222 2
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHHHHHHHhc---CCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy8552 77 ALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLS---GSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGV 153 (523)
Q Consensus 77 ~~va~lLK~flr~LpePli~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m 153 (523)
-+||.++|.||++|||||+|..+|+.|+.++. ....+..+++++.++..||++||+.|+.|+.||.+|+++ +..+|
T Consensus 106 ~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va~~-~~~~L 184 (235)
T cd04405 106 RLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAKN-DMPRL 184 (235)
T ss_pred HHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhc-Ccccc
Confidence 27999999999999999999999999998887 345888999999999999999999999999999999998 44444
Q ss_pred CC--Ccc-chhhhhc
Q psy8552 154 RE--PPT-ILIQSFT 165 (523)
Q Consensus 154 ~~--~~~-~l~~~~~ 165 (523)
.. +|+ ++++.|+
T Consensus 185 ~~~~~nR~~v~~~Fs 199 (235)
T cd04405 185 HKEIENRMLVKQTFS 199 (235)
T ss_pred ccccchHHHHHHHhh
Confidence 32 333 4555665
No 78
>KOG4724|consensus
Probab=99.28 E-value=6.4e-12 Score=130.47 Aligned_cols=140 Identities=15% Similarity=0.098 Sum_probs=127.3
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCccceEEecC-ChhHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCh
Q psy8552 19 TSPFKSDNLKAASEHYSKPDCGLSAANLFEPG-NASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPY 97 (523)
Q Consensus 19 ~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~-~~~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~LpePli~~ 97 (523)
..|..+..+.-++-.+ |--++||||.. ....+++||+.+++|.. ++++...++++|.++|.|||.+|.-++..
T Consensus 95 ~lp~p~~d~l~~lc~k-----gp~t~giFr~~anek~~relKe~lnsgv~-v~l~~~~i~v~a~v~kdflr~ip~~~lSs 168 (741)
T KOG4724|consen 95 RLPEPDEDFLLLLCCK-----GPCTRGIFRTIANEKNVRELKETLNSGVD-VGLKSGEIVVDAAVDKDFLRTIPQLTLSS 168 (741)
T ss_pred CCCChHHHHHHHHhhc-----CcccHHHHHHHHHHHHHHHHHHHhccccc-ccccccceEEeehhhhchhhhchhhhhcc
Confidence 3899999999999888 77888999999 44999999999999976 68888899999999999999999999999
Q ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccc
Q psy8552 98 VYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFV 167 (523)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v 167 (523)
++|+.|+.+....++++++.+++.+...||..|..+|++|...| .+..++..|+|+.. ++|++.+.+
T Consensus 169 dl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~--nla~cv~p~ 235 (741)
T KOG4724|consen 169 DLNSHWQLQGPENVYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGP--NLAQCVNPI 235 (741)
T ss_pred ccHHHHhhccccccHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCc--cHHHHhcch
Confidence 99999999999999999999999999999999999999999988 89999999999988 455555533
No 79
>KOG4370|consensus
Probab=99.27 E-value=2e-11 Score=120.56 Aligned_cols=138 Identities=15% Similarity=0.171 Sum_probs=117.0
Q ss_pred CCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecC-ChhHHHHHHHHHhCCC--------------------------
Q psy8552 14 NVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPG-NASQVAELFHAYSGEI-------------------------- 66 (523)
Q Consensus 14 ~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~-~~~~v~~l~~~~~~~~-------------------------- 66 (523)
..++...|.+....+.+.+.+ |+.+||++|.+ .++..++++.+-+++.
T Consensus 65 e~d~~~~~~~f~~~~~~~e~~-----~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvv 139 (514)
T KOG4370|consen 65 ELDGIPLPSFFRYAIDFVEEN-----GLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVV 139 (514)
T ss_pred ccCCCcCcccchhhhhhhhcc-----ccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccc
Confidence 345667899999999999999 89999999999 6666666655544431
Q ss_pred --------------CCCCCCCCCHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHH
Q psy8552 67 --------------KSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFS 132 (523)
Q Consensus 67 --------------~~~~~~~~d~~~va~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~ 132 (523)
.....+++++.+||+|||.|||+||+||+|.++...|..++.-.......+.++.++..||..||.
T Consensus 140 pi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk~Lp~cNyl 219 (514)
T KOG4370|consen 140 PIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLKILPKCNYL 219 (514)
T ss_pred cccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccchH
Confidence 011234567999999999999999999999999999999999888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCC
Q psy8552 133 ALRYLMAHLARMCALQYARGVREP 156 (523)
Q Consensus 133 ~L~~l~~~l~~v~~~~~~n~m~~~ 156 (523)
++.||+-|+-.|......|+|+..
T Consensus 220 l~swl~lH~d~vi~~e~~~Kln~q 243 (514)
T KOG4370|consen 220 LYSWLNLHKDKVIEEEYCLKLNKQ 243 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchh
Confidence 999999999999999998888844
No 80
>KOG3601|consensus
Probab=99.19 E-value=3.7e-12 Score=115.42 Aligned_cols=85 Identities=28% Similarity=0.452 Sum_probs=76.7
Q ss_pred CCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHHHHH
Q psy8552 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVELINY 290 (523)
Q Consensus 212 l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~LV~~ 290 (523)
+..++||+|.|+|..||++|++..+|+||+|.++..+|+|.+|+++...|.|+++.+ ..|+|+.. ..+|+|+.+|++|
T Consensus 55 ~~~~~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw-~skfnslnplv~Y 133 (222)
T KOG3601|consen 55 MKPHEWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLW-SSKFNSLNPLVSY 133 (222)
T ss_pred cccccceecccccchhhhhhhccCcchhhhhhhhcCcccccccccCCCCceeccccccCccccccc-hhhccCCCCCccc
Confidence 456899999999999999999999999999999999999999999999999999997 45677654 4789999999999
Q ss_pred HhhCCcc
Q psy8552 291 YKHESLS 297 (523)
Q Consensus 291 y~~~~~~ 297 (523)
|++.+..
T Consensus 134 ~rt~s~~ 140 (222)
T KOG3601|consen 134 HRTASQS 140 (222)
T ss_pred Ccccccc
Confidence 9998864
No 81
>KOG3601|consensus
Probab=99.10 E-value=1.2e-11 Score=112.05 Aligned_cols=116 Identities=23% Similarity=0.202 Sum_probs=95.9
Q ss_pred ccccccc-cccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCce
Q psy8552 377 RFSSDVD-ADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQY 452 (523)
Q Consensus 377 ~~~~~l~-k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~ 452 (523)
.+.+++. ..++.+|..+. .++.+|++|.|++.. ...+||+ .|+|..||++|+++.+|+||+|.++ +|.|
T Consensus 22 g~~lk~l~~~d~~nw~~ae--l~g~~g~~P~Nai~~-----~~~~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~f 94 (222)
T KOG3601|consen 22 GDNLKILNMEDDINWYKAE--LDGPEGFIPKNAIRM-----KPHEWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDF 94 (222)
T ss_pred CCceEecchHHhhhhhhHh--hcCccccCccccccc-----ccccceecccccchhhhhhhccCcchhhhhhhhcCcccc
Confidence 4555553 34455677644 445899999999743 3358999 9999999999999889999999998 9999
Q ss_pred EEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccc
Q psy8552 453 ALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEE 500 (523)
Q Consensus 453 ~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~ 500 (523)
.+|+++...|.|+++.+...+.++... ..|.|+.+||+||..++...
T Consensus 95 sgsvr~~d~vqhfkvvrpa~~k~~lw~-skfnslnplv~Y~rt~s~~r 141 (222)
T KOG3601|consen 95 SGSVRFPDGVQHFKVVRPAFGKYFLWS-SKFNSLNPLVSYHRTASQSR 141 (222)
T ss_pred cccccCCCCceeccccccCccccccch-hhccCCCCCcccCccccccc
Confidence 999999999999999988877777664 58999999999999988654
No 82
>KOG1930|consensus
Probab=99.02 E-value=3.7e-10 Score=111.69 Aligned_cols=97 Identities=30% Similarity=0.461 Sum_probs=81.8
Q ss_pred CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEE----------C-----CeeEEEEEEEeCCcEEE
Q psy8552 415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVC----------S-----GAPKHCLVYETERGFGF 476 (523)
Q Consensus 415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~----------~-----~~v~h~~I~~~~~~~~~ 476 (523)
...++-||. +|+|++|.+||+.+..|+||||+|. .|.|-|.++. + ..|+||+|+....|..+
T Consensus 208 ~DTSKyWYKP~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkGVkL 287 (483)
T KOG1930|consen 208 KDTSKYWYKPNISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKGVKL 287 (483)
T ss_pred ecccccccCCCCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCceec
Confidence 457788999 9999999999999999999999999 9999999987 1 34999999998888766
Q ss_pred ec--CCCCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552 477 AE--PFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516 (523)
Q Consensus 477 ~~--~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~ 516 (523)
-+ ....|.||..||--|+-.+ -.|+|.|+.|-+.+
T Consensus 288 KGC~nEP~FGSLSALV~QHSIt~-----LALPckL~iP~rDp 324 (483)
T KOG1930|consen 288 KGCDNEPVFGSLSALVYQHSITA-----LALPCKLVIPDRDP 324 (483)
T ss_pred cCCCCCCccchhHHHHhhccchh-----hhcceeEeccCCCc
Confidence 43 3579999999996444433 67899999998776
No 83
>KOG0194|consensus
Probab=98.95 E-value=3e-09 Score=111.14 Aligned_cols=96 Identities=29% Similarity=0.414 Sum_probs=80.2
Q ss_pred CCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CC---ce-EEEEEEC--CeeEEEEEEEeCCcEEEecCCCCCCCH
Q psy8552 416 SGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TG---QY-ALSIVCS--GAPKHCLVYETERGFGFAEPFNIYPSL 486 (523)
Q Consensus 416 ~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~---~~-~Ls~~~~--~~v~h~~I~~~~~~~~~~~~~~~F~sl 486 (523)
+..++||| .+.|++++.+|. .+|+||||.|+ ++ .+ +||+... .+++||.|...++.+++.. ...|+|+
T Consensus 46 ~~~~~~yHG~l~red~~~lL~--~~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~~~~~~-~~~F~si 122 (474)
T KOG0194|consen 46 LRELPYYHGLLPREDAEKLLK--NDGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNLFFFEG-LRKFPTI 122 (474)
T ss_pred hhcCccccccccHhHHHHHhC--CCCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCeeEEec-cccCCcH
Confidence 45579999 999999999998 69999999999 33 24 8999885 8899999999888555544 5799999
Q ss_pred HHHHHHHhhCCccccCCccceeecccccCC
Q psy8552 487 GALVLHYAANSLEEHNDDLKTTLAYPVFAP 516 (523)
Q Consensus 487 ~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~ 516 (523)
.+||.||+.+.+..+ +....|..|+.++
T Consensus 123 ~~li~~~~~~~~~~~--~~~~~L~~PI~r~ 150 (474)
T KOG0194|consen 123 SELVNYYKFSKLEIT--GKNFFLKRPIPRQ 150 (474)
T ss_pred HHHHHHHHhccccee--ccceeeccccccc
Confidence 999999999987763 3455899999875
No 84
>KOG1930|consensus
Probab=98.90 E-value=2.2e-09 Score=106.24 Aligned_cols=94 Identities=27% Similarity=0.350 Sum_probs=79.8
Q ss_pred CccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEE----------C-----CeeEEEEEEEeCCeEEe---CC
Q psy8552 216 EWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRK----------G-----GTNKLIKIFHRNGRYGF---SE 277 (523)
Q Consensus 216 ~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~----------~-----~~v~h~~I~~~~~~~~~---~~ 277 (523)
=||..+|+|++|-+||++++.|+||||+|.+..|.|-|.++. + .-|+||.|+...++..+ ++
T Consensus 213 yWYKP~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkGVkLKGC~n 292 (483)
T KOG1930|consen 213 YWYKPNISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKGVKLKGCDN 292 (483)
T ss_pred cccCCCCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCceeccCCCC
Confidence 499999999999999999999999999999999999999883 2 23899999987777776 45
Q ss_pred CCccCCHHHHHHHHhhCCcccCCCCcceeeccccccC
Q psy8552 278 PFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRF 314 (523)
Q Consensus 278 ~~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~ 314 (523)
...|.||..||--+.-..+ .|+|.|.-|-..+
T Consensus 293 EP~FGSLSALV~QHSIt~L-----ALPckL~iP~rDp 324 (483)
T KOG1930|consen 293 EPVFGSLSALVYQHSITAL-----ALPCKLVIPDRDP 324 (483)
T ss_pred CCccchhHHHHhhccchhh-----hcceeEeccCCCc
Confidence 6889999999987777666 6888888775543
No 85
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=98.76 E-value=1.3e-07 Score=89.02 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=59.4
Q ss_pred CCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEE-ECCeeEEEEEEEe--CC------eEEeCCCCccCC
Q psy8552 213 RDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLR-KGGTNKLIKIFHR--NG------RYGFSEPFKFTS 283 (523)
Q Consensus 213 ~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~-~~~~v~h~~I~~~--~~------~~~~~~~~~F~s 283 (523)
-.+|-|+ +++-.+|++.|.+.+.|.++||.|+......+++++ .+|-..|+.|... +. .+.|+ +..|.+
T Consensus 36 I~HP~F~-n~~~~qAe~~L~~~~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~-~~~yeD 113 (220)
T PF14633_consen 36 IKHPLFK-NFNYKQAEEYLADQDVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIG-GEEYED 113 (220)
T ss_dssp HCSTTEE-SS-HHHHHHHHCCS-TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEET-TEEESS
T ss_pred ccCCCcc-CCCHHHHHHHHhcCCCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEEC-CeEECC
Confidence 3467777 999999999999999999999999986666899988 5666779998752 21 24444 688999
Q ss_pred HHHHHHHHhh
Q psy8552 284 VVELINYYKH 293 (523)
Q Consensus 284 l~~LV~~y~~ 293 (523)
|.|||.-|..
T Consensus 114 LDEii~r~V~ 123 (220)
T PF14633_consen 114 LDEIIARHVE 123 (220)
T ss_dssp HHHHHHHCHH
T ss_pred HHHHHHHHHH
Confidence 9999987765
No 86
>KOG3565|consensus
Probab=98.75 E-value=2e-08 Score=108.58 Aligned_cols=154 Identities=20% Similarity=0.257 Sum_probs=129.2
Q ss_pred CCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecC-Ch-hHHHHHHHHHhCCCCC-CCCCCCCHHHHHHHHHHHHhhc
Q psy8552 14 NVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPG-NA-SQVAELFHAYSGEIKS-YNFSKLEPALLAIMLKTYLKSL 90 (523)
Q Consensus 14 ~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~-~~-~~v~~l~~~~~~~~~~-~~~~~~d~~~va~lLK~flr~L 90 (523)
....+.+|.++..|+.+++.+ |+..+||||.. +. ..|...+.++.+|... .+..+-+... |.++|.|+|.|
T Consensus 212 ~~~~q~iP~i~d~~~~l~~~~-----~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~l 285 (640)
T KOG3565|consen 212 QYYFQFIPLIVDSLQRLEERR-----GLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGL 285 (640)
T ss_pred cCCcccccHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccC
Confidence 346788999999999999999 89999999955 66 9999999999998421 2333445666 99999999999
Q ss_pred CCC-CCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccc
Q psy8552 91 TEP-LIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLP 169 (523)
Q Consensus 91 peP-li~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P 169 (523)
.+| .++++.+..++.+....+.-+++..++.++..+|..+..++.++..|+...+..+..|.|... +++.+|+ |
T Consensus 286 e~P~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~--n~~~~~g---~ 360 (640)
T KOG3565|consen 286 EEPADFPFEDFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPY--NLAICFG---P 360 (640)
T ss_pred CCcccCccccccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCcc--ccccccc---c
Confidence 999 999999999999999777778778889999999999999999999999999998888866544 7777775 6
Q ss_pred cCCCCCCCC
Q psy8552 170 TFSSPPALP 178 (523)
Q Consensus 170 ~~~~pp~~~ 178 (523)
++.+.|..+
T Consensus 361 ~~~~~~e~~ 369 (640)
T KOG3565|consen 361 TLEPVPEGP 369 (640)
T ss_pred ccccCcccc
Confidence 665555444
No 87
>KOG3697|consensus
Probab=98.34 E-value=5.8e-07 Score=85.19 Aligned_cols=100 Identities=23% Similarity=0.225 Sum_probs=85.5
Q ss_pred CCCCCccccCCCHHHHHHHhcCCCCceEEEEcCC----------------------------------------------
Q psy8552 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTS---------------------------------------------- 245 (523)
Q Consensus 212 l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~---------------------------------------------- 245 (523)
....+||||.++++++++.|.. +|.|++|.+.
T Consensus 198 p~k~pp~~g~l~~~~~q~~l~~--~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~ 275 (345)
T KOG3697|consen 198 PSKMPPPGGFLDTRLKQRPLAP--DAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDE 275 (345)
T ss_pred cccCCCCCCccchhhhhccCCc--ccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhccc
Confidence 3557999999999999999987 8888888543
Q ss_pred -CCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHHHhhCCcccCCCCcceeeccccccC
Q psy8552 246 -TKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRF 314 (523)
Q Consensus 246 -~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~ 314 (523)
+++|.|+|+-..+++.+|..+...+|-... ..+.|+|+.-||.|+..+.+++...+....|.+|+.+.
T Consensus 276 ~~~~gqyvltgl~~~~~khlllvdpegvvrt-kd~~fdsishli~yh~~~~lpiis~~sel~l~~pv~r~ 344 (345)
T KOG3697|consen 276 TTTPGQYVLTGLQSGQPKHLLLVDPEGVVRT-KDRRFDSISHLINYHMDNHLPIISAGSELCLQQPVERK 344 (345)
T ss_pred cCCCccEEEecccCCCcceEEEECCccceec-ccchhhHHHHHHHHhhhccCceecCcchhhhhCccccc
Confidence 347889999999999999998877776654 45899999999999999999998888888999998864
No 88
>KOG1856|consensus
Probab=98.12 E-value=2.6e-05 Score=86.82 Aligned_cols=170 Identities=16% Similarity=0.317 Sum_probs=122.7
Q ss_pred CCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEE-CCeeEEEEEEE--eCCeEEeC-----CCCccC
Q psy8552 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRK-GGTNKLIKIFH--RNGRYGFS-----EPFKFT 282 (523)
Q Consensus 211 ~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~-~~~v~h~~I~~--~~~~~~~~-----~~~~F~ 282 (523)
.+-.+|.|| +++-++||++|.....|.++||.|+......+++++. ++--.|+.|.. ..+.|.++ ++..|.
T Consensus 1104 RvI~HP~F~-n~n~eQAe~yL~~~d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~fe 1182 (1299)
T KOG1856|consen 1104 RVIAHPLFK-NLNAEQAEAYLSDMDQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFE 1182 (1299)
T ss_pred hhhcCcccc-CCCHHHHHHHHHhcccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCcccc
Confidence 344678888 8999999999999999999999999866668888874 55566777763 23333332 468899
Q ss_pred CHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcccchhh
Q psy8552 283 SVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQ 362 (523)
Q Consensus 283 sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~~~l~~ 362 (523)
.|.++|.-|-..-..
T Consensus 1183 DLDEiI~r~vqpm~~----------------------------------------------------------------- 1197 (1299)
T KOG1856|consen 1183 DLDEIIARYVQPMAT----------------------------------------------------------------- 1197 (1299)
T ss_pred cHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 999999877653320
Q ss_pred hhhhhchhccccccccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccccCCHHHHHHHhcC--CCCC
Q psy8552 363 YNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAEALLSG--RPDG 440 (523)
Q Consensus 363 ~~~e~~ar~m~~l~~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~~isr~~Ae~~L~~--~~~G 440 (523)
..+| +....+|..=++.+.|++|.. +.++
T Consensus 1198 ~~~e-------------------------------------------------m~nhkyf~~Gt~~~~ek~L~~~k~~np 1228 (1299)
T KOG1856|consen 1198 NLRE-------------------------------------------------MTNHKYFFTGTKKEVEKLLRDYKKVNP 1228 (1299)
T ss_pred HHHH-------------------------------------------------HHhhhHhhcCCHHHHHHHHHHHhccCC
Confidence 0011 111123333357778888852 2233
Q ss_pred e---EEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCC
Q psy8552 441 T---FLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANS 497 (523)
Q Consensus 441 ~---FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~ 497 (523)
. |..-.|. ||.|.|+++.+++++|--+.....|+.|.+ +.|+||.+|..+++.+-
T Consensus 1229 ~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p~g~~~rg--~~f~tld~L~~~FK~h~ 1288 (1299)
T KOG1856|consen 1229 KKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVPEGFRFRG--QNFGTLDELCRWFKRHY 1288 (1299)
T ss_pred CeeeEEEEecccCCceEEEEeccCCCccceeEEEcccceEEec--ccchhHHHHHHHHHHHh
Confidence 3 3334455 999999999999999999999999999965 58999999999998873
No 89
>KOG3751|consensus
Probab=98.09 E-value=1.8e-06 Score=88.31 Aligned_cols=98 Identities=28% Similarity=0.503 Sum_probs=80.1
Q ss_pred CCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE--eCCe-EE-e-CCCCccCC
Q psy8552 211 SLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH--RNGR-YG-F-SEPFKFTS 283 (523)
Q Consensus 211 ~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~--~~~~-~~-~-~~~~~F~s 283 (523)
....+.||||.|+|+++..+++. ..+|-||+|+|.++|..|+++.....++.||+|.- .+|. |+ . .+..+|.+
T Consensus 515 ~h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~~t~~~g~t~~sd 594 (622)
T KOG3751|consen 515 IHRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTFFTLDDGPTKFSD 594 (622)
T ss_pred hcccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCceeeccCCCCccccc
Confidence 35668999999999999998876 48899999999999988999999999999999984 3443 32 2 34577999
Q ss_pred HHHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552 284 VVELINYYKHESLSQYNSTLDTRLLYPVSR 313 (523)
Q Consensus 284 l~~LV~~y~~~~~~~~~~~l~~~L~~p~~~ 313 (523)
+..|+++|+-+.- -+.|.|++-|.+
T Consensus 595 ~~ql~~~~ql~k~-----~l~~al~~~~~r 619 (622)
T KOG3751|consen 595 LIQLVEFYQLNKG-----VLPCALKHCCER 619 (622)
T ss_pred cccccchhhcCCC-----cchHHHHHHHHh
Confidence 9999999988742 567777776654
No 90
>KOG3697|consensus
Probab=97.95 E-value=1.4e-05 Score=76.12 Aligned_cols=96 Identities=24% Similarity=0.229 Sum_probs=79.0
Q ss_pred CCCcccc-cCCHHHHHHHhcCCCCCeEEeecC------------------------------------------------
Q psy8552 417 GEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS------------------------------------------------ 447 (523)
Q Consensus 417 ~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s------------------------------------------------ 447 (523)
..++||+ .+++++++..|. ++|.|++|.+
T Consensus 199 ~k~pp~~g~l~~~~~q~~l~--~~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~~ 276 (345)
T KOG3697|consen 199 SKMPPPGGFLDTRLKQRPLA--PDAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDET 276 (345)
T ss_pred ccCCCCCCccchhhhhccCC--cccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhcccc
Confidence 5679999 999999999997 7777777643
Q ss_pred C-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552 448 T-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516 (523)
Q Consensus 448 ~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~ 516 (523)
. +|.|+|+=...+..+|.++.-.+ |..- .+.+.|+|+..||+||..+.|++-..|--.+|.+||.+.
T Consensus 277 ~~~gqyvltgl~~~~~khlllvdpe-gvvr-tkd~~fdsishli~yh~~~~lpiis~~sel~l~~pv~r~ 344 (345)
T KOG3697|consen 277 TTPGQYVLTGLQSGQPKHLLLVDPE-GVVR-TKDRRFDSISHLINYHMDNHLPIISAGSELCLQQPVERK 344 (345)
T ss_pred CCCccEEEecccCCCcceEEEECCc-ccee-cccchhhHHHHHHHHhhhccCceecCcchhhhhCccccc
Confidence 2 78899999889999999877544 3333 345799999999999999999988888888999999764
No 91
>KOG3751|consensus
Probab=97.91 E-value=3.8e-06 Score=86.07 Aligned_cols=95 Identities=26% Similarity=0.392 Sum_probs=77.8
Q ss_pred CCCCCcccc-cCCHHHHHHHhcCCC--CCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCC-c---EEEecCCCCCCC
Q psy8552 415 ESGEKTWLV-RMSRAQAEALLSGRP--DGTFLIRPST--TGQYALSIVCSGAPKHCLVYETER-G---FGFAEPFNIYPS 485 (523)
Q Consensus 415 ~~~~~~W~~-~isr~~Ae~~L~~~~--~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~-~---~~~~~~~~~F~s 485 (523)
.+..+.||| .|+|+++..++++.+ +|.||+|+|. +-.|++++...++|+||.|...+. | +....+...|.+
T Consensus 515 ~h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~~t~~~g~t~~sd 594 (622)
T KOG3751|consen 515 IHRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTFFTLDDGPTKFSD 594 (622)
T ss_pred hcccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCceeeccCCCCccccc
Confidence 478889999 999999999997665 8999999998 777999999999999999997543 3 222334568999
Q ss_pred HHHHHHHHhhCCccccCCccceeeccccc
Q psy8552 486 LGALVLHYAANSLEEHNDDLKTTLAYPVF 514 (523)
Q Consensus 486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~ 514 (523)
+..||++|+-++ .-+.|.|+.-|.
T Consensus 595 ~~ql~~~~ql~k-----~~l~~al~~~~~ 618 (622)
T KOG3751|consen 595 LIQLVEFYQLNK-----GVLPCALKHCCE 618 (622)
T ss_pred cccccchhhcCC-----CcchHHHHHHHH
Confidence 999999999985 556777766543
No 92
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=97.90 E-value=6e-05 Score=77.96 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=103.4
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCccceEE---ecC-ChhHHHHHHH-HHhCCCCC--C-------CCCCCCHHHHHHHHH
Q psy8552 19 TSPFKSDNLKAASEHYSKPDCGLSAANLF---EPG-NASQVAELFH-AYSGEIKS--Y-------NFSKLEPALLAIMLK 84 (523)
Q Consensus 19 ~vP~vv~~~i~~l~~~~~~~~Gl~~eGif---R~~-~~~~v~~l~~-~~~~~~~~--~-------~~~~~d~~~va~lLK 84 (523)
.|=.+|..|.+.|..+ |+++++|| |.. ....++.+.. .|..+... . .+...++|+++++||
T Consensus 7 ev~~li~~~t~elK~r-----gldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LK 81 (420)
T PF08101_consen 7 EVKDLIHACTEELKSR-----GLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLK 81 (420)
T ss_pred HHHHHHHHHHHHHHhc-----cCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHH
Confidence 4556889999999999 89999987 555 4466655555 44444321 0 122458999999999
Q ss_pred HHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHH-hhcC-HHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhh
Q psy8552 85 TYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALV-QDFP-AHHFSALRYLMAHLARMCALQYARGVREPPTILIQ 162 (523)
Q Consensus 85 ~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~Lp-~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~ 162 (523)
.-+..||..+++++.|..|...-+..+- ...++..++ .+|| +.|..++.-++.+|..|+.|+..|+|+.. -+++
T Consensus 82 w~w~RLp~gvVgW~~Y~~Fk~~E~~~~y--p~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~Nglsgr--Klsr 157 (420)
T PF08101_consen 82 WIWSRLPGGVVGWDSYEEFKRREREAGY--PRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGR--KLSR 157 (420)
T ss_pred HHHHHcCCCccccHHHHHHHHHHhhcCC--ChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHH--HHHH
Confidence 9999999999999999999876653322 123455555 5674 77788999999999999999888877644 6777
Q ss_pred hhccc
Q psy8552 163 SFTFV 167 (523)
Q Consensus 163 ~~~~v 167 (523)
.+++.
T Consensus 158 m~g~W 162 (420)
T PF08101_consen 158 MAGIW 162 (420)
T ss_pred HHHHH
Confidence 77754
No 93
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=97.17 E-value=0.0016 Score=61.68 Aligned_cols=76 Identities=21% Similarity=0.281 Sum_probs=55.9
Q ss_pred CcccccCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEE-CCeeEEEEEEEeCC------c-EEEecCCCCCCCHHH
Q psy8552 419 KTWLVRMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVC-SGAPKHCLVYETER------G-FGFAEPFNIYPSLGA 488 (523)
Q Consensus 419 ~~W~~~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~-~~~v~h~~I~~~~~------~-~~~~~~~~~F~sl~~ 488 (523)
.|-|++++-.+|++.|..+..|.++||+|+ ....+++++. ++...|+.|.-.+. | ...++ +..|.+|+|
T Consensus 38 HP~F~n~~~~qAe~~L~~~~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~-~~~yeDLDE 116 (220)
T PF14633_consen 38 HPLFKNFNYKQAEEYLADQDVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIG-GEEYEDLDE 116 (220)
T ss_dssp STTEESS-HHHHHHHHCCS-TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEET-TEEESSHHH
T ss_pred CCCccCCCHHHHHHHHhcCCCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEEC-CeEECCHHH
Confidence 466779999999999998889999999999 3457888875 67777988885432 1 23333 468999999
Q ss_pred HHHHHhh
Q psy8552 489 LVLHYAA 495 (523)
Q Consensus 489 LV~~y~~ 495 (523)
||..|-+
T Consensus 117 ii~r~V~ 123 (220)
T PF14633_consen 117 IIARHVE 123 (220)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 9998865
No 94
>KOG4566|consensus
Probab=97.15 E-value=0.00071 Score=65.24 Aligned_cols=88 Identities=25% Similarity=0.467 Sum_probs=72.9
Q ss_pred CcCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeC-----CC--Cc
Q psy8552 208 ETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS-----EP--FK 280 (523)
Q Consensus 208 ~~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~-----~~--~~ 280 (523)
....++..+||||.+++.+|+..|...+.|+|+||+|...+..+.|++......+-.+|.+.++.|..+ .. ..
T Consensus 45 s~~~~~~~g~~w~~~~~~~~~~~l~~~p~~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~~sfr~ds~~~~~~pl~~ 124 (258)
T KOG4566|consen 45 SLSLLDSSGHYWGLETANEAELCLGQEPRGTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQDSSFRLDSSHRHTPPLIS 124 (258)
T ss_pred eeeccccCCcccccccchhHHHhhcCCCccceeeecCcCccccceeEeeeccCCCCccccccccceecccccccCCCccc
Confidence 355667789999999999999999888999999999998888899999988888888888766666552 22 47
Q ss_pred cCCHHHHHHHHhhCC
Q psy8552 281 FTSVVELINYYKHES 295 (523)
Q Consensus 281 F~sl~~LV~~y~~~~ 295 (523)
|+++..+++||+...
T Consensus 125 ~e~~~~~~~~y~~~~ 139 (258)
T KOG4566|consen 125 FEDVEVLIHHYRQSR 139 (258)
T ss_pred ChhHHHHHHhhhhhh
Confidence 999999999995543
No 95
>KOG4724|consensus
Probab=96.84 E-value=0.0009 Score=70.91 Aligned_cols=144 Identities=7% Similarity=-0.065 Sum_probs=104.0
Q ss_pred CcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecC-Ch-hHHHH---HHHHHhCCCCCCCCCCCCHHHHHHH
Q psy8552 8 LLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPG-NA-SQVAE---LFHAYSGEIKSYNFSKLEPALLAIM 82 (523)
Q Consensus 8 ~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~-~~-~~v~~---l~~~~~~~~~~~~~~~~d~~~va~l 82 (523)
||...+ ..++..|..+.....-|... +.+++++||.. .. ..++. ....+..+...++.+...+|++|++
T Consensus 420 PlS~~c-~d~gk~prPlq~~~tll~kk-----np~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~taasv 493 (741)
T KOG4724|consen 420 PLSVFC-ADQGKTPRPLQIQSTLLKKK-----NPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVHTAASV 493 (741)
T ss_pred chhhcc-cccCCCCCChhhhhHHHHhc-----CCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCchHHHHH
Confidence 444443 34555666666566667777 67788899885 32 22222 2222333222266677789999999
Q ss_pred HHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHH--------HHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy8552 83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFA--------LVQDFPAHHFSALRYLMAHLARMCALQYARGVR 154 (523)
Q Consensus 83 LK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~ 154 (523)
+|.|+|++|..++..+.+.++.++...++++++.++|+. .....|..+....+....-...+..+++.++|+
T Consensus 494 ~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~~s~d 573 (741)
T KOG4724|consen 494 HKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEETSND 573 (741)
T ss_pred HHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceeccccccccccc
Confidence 999999999999999999999999999999999999988 777888888877766666556666777777666
Q ss_pred CCc
Q psy8552 155 EPP 157 (523)
Q Consensus 155 ~~~ 157 (523)
..|
T Consensus 574 sSn 576 (741)
T KOG4724|consen 574 SSN 576 (741)
T ss_pred ccc
Confidence 553
No 96
>KOG4566|consensus
Probab=95.31 E-value=0.031 Score=54.04 Aligned_cols=82 Identities=21% Similarity=0.322 Sum_probs=65.4
Q ss_pred CCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEe----cCC--CCCCCH
Q psy8552 416 SGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFA----EPF--NIYPSL 486 (523)
Q Consensus 416 ~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~----~~~--~~F~sl 486 (523)
+....||+ ..+.++|+..|...+.|.|+||+|. +..+.|++......+.-+|...++.+... ... ..|+++
T Consensus 49 ~~~~g~~w~~~~~~~~~~~l~~~p~~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~~sfr~ds~~~~~~pl~~~e~~ 128 (258)
T KOG4566|consen 49 LDSSGHYWGLETANEAELCLGQEPRGTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQDSSFRLDSSHRHTPPLISFEDV 128 (258)
T ss_pred cccCCcccccccchhHHHhhcCCCccceeeecCcCccccceeEeeeccCCCCccccccccceecccccccCCCcccChhH
Confidence 55668999 9999999999988889999999999 66789999998888888888766544331 122 479999
Q ss_pred HHHHHHHhhCC
Q psy8552 487 GALVLHYAANS 497 (523)
Q Consensus 487 ~~LV~~y~~~~ 497 (523)
..+++||+...
T Consensus 129 ~~~~~~y~~~~ 139 (258)
T KOG4566|consen 129 EVLIHHYRQSR 139 (258)
T ss_pred HHHHHhhhhhh
Confidence 99999996654
No 97
>KOG1856|consensus
Probab=93.16 E-value=0.17 Score=57.62 Aligned_cols=80 Identities=24% Similarity=0.310 Sum_probs=59.5
Q ss_pred CCCcccccCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEE-CCeeEEEEEEEeCC------cEEEecCCCCCCCHH
Q psy8552 417 GEKTWLVRMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVC-SGAPKHCLVYETER------GFGFAEPFNIYPSLG 487 (523)
Q Consensus 417 ~~~~W~~~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~-~~~v~h~~I~~~~~------~~~~~~~~~~F~sl~ 487 (523)
-..|.||+++-.+||.+|....-|.++||+|+ ....+++++. ++...|+.|.-.+. |..+.-++..|..|.
T Consensus 1106 I~HP~F~n~n~eQAe~yL~~~d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~feDLD 1185 (1299)
T KOG1856|consen 1106 IAHPLFKNLNAEQAEAYLSDMDQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFEDLD 1185 (1299)
T ss_pred hcCccccCCCHHHHHHHHHhcccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCcccccHH
Confidence 34588999999999999999899999999999 4446666665 56666777764321 222222356999999
Q ss_pred HHHHHHhhC
Q psy8552 488 ALVLHYAAN 496 (523)
Q Consensus 488 ~LV~~y~~~ 496 (523)
|+|..|-+.
T Consensus 1186 EiI~r~vqp 1194 (1299)
T KOG1856|consen 1186 EIIARYVQP 1194 (1299)
T ss_pred HHHHHHHHH
Confidence 999999765
No 98
>KOG1453|consensus
Probab=91.35 E-value=0.095 Score=60.55 Aligned_cols=132 Identities=23% Similarity=0.243 Sum_probs=102.9
Q ss_pred CCCCCCHHHHH-HHHHHhccCCCCCCCccceEEecCC-hhHHHHHHHHHhCCC-CCCCC----C-CCCHHHHHHHHHHHH
Q psy8552 16 SSTTSPFKSDN-LKAASEHYSKPDCGLSAANLFEPGN-ASQVAELFHAYSGEI-KSYNF----S-KLEPALLAIMLKTYL 87 (523)
Q Consensus 16 ~~~~vP~vv~~-~i~~l~~~~~~~~Gl~~eGifR~~~-~~~v~~l~~~~~~~~-~~~~~----~-~~d~~~va~lLK~fl 87 (523)
.....|.++.+ |.+..... |....|+||.++ ...+...+..++... ...+. . ..++...++.++.|+
T Consensus 476 ~~~~~~~~vs~~~~~e~~~~-----g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~sg~~~~~~ 550 (918)
T KOG1453|consen 476 LNSNRPLSVSRSLERESRSP-----GALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNLHSGALKHYL 550 (918)
T ss_pred hhcccCcccccchhcccCCC-----CcccccccccCCccccccchhhccCccccchhccCCCccccccchhccCcchhhh
Confidence 34557888888 66777777 888999999995 699999999999865 21111 1 124566777999999
Q ss_pred hhc--CCCCCChhhHHHHH----------------HHhcCCChHHHH-------HHHHHHHh----hcCHHHHHHHHHHH
Q psy8552 88 KSL--TEPLIPYVYYEKFV----------------SLLSGSNDRHIG-------SRLFALVQ----DFPAHHFSALRYLM 138 (523)
Q Consensus 88 r~L--pePli~~~~~~~~~----------------~~~~~~~~~~~~-------~~~~~~l~----~Lp~~~~~~L~~l~ 138 (523)
|.+ |.+......|..|+ ....+....+++ ..+..+.. .+|.....++.++.
T Consensus 551 r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP~i~~~c~~~ie 630 (918)
T KOG1453|consen 551 RSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVPFILKKCLREIE 630 (918)
T ss_pred hcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhhccCCCCCCHHHHHHHHHHH
Confidence 999 99999999999888 444444455555 67778888 99999999999999
Q ss_pred HHHHHHHHhhhhcC
Q psy8552 139 AHLARMCALQYARG 152 (523)
Q Consensus 139 ~~l~~v~~~~~~n~ 152 (523)
.|+.++...-.+|+
T Consensus 631 ~~~lr~eGiYRksG 644 (918)
T KOG1453|consen 631 AHLLRVEGIYRKSG 644 (918)
T ss_pred Hhhhhccceeeccc
Confidence 99999999777664
No 99
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=87.47 E-value=0.084 Score=37.19 Aligned_cols=30 Identities=3% Similarity=-0.358 Sum_probs=25.4
Q ss_pred ccccccccccccchhHHHhhhhhccccccc
Q psy8552 377 RFSSDVDADIHSNDVDKYINLKIAFTNLSG 406 (523)
Q Consensus 377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~ 406 (523)
.+.+.+++..+.+||.++...++.+|++|+
T Consensus 19 Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 19 GDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp TEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 567777777777999999999899999995
No 100
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=85.16 E-value=0.11 Score=36.79 Aligned_cols=31 Identities=3% Similarity=-0.371 Sum_probs=25.8
Q ss_pred ccccccccccccchhHHHhhhhhcccccccccC
Q psy8552 377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVA 409 (523)
Q Consensus 377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~ 409 (523)
.+++.++...+.+||.++. ++..|++|++++
T Consensus 18 Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yV 48 (49)
T PF14604_consen 18 GDVITVLEKSDDGWWYGRN--TGRTGLFPANYV 48 (49)
T ss_dssp TEEEEEEEESSTSEEEEEE--TTEEEEEEGGGE
T ss_pred CCEEEEEEeCCCCEEEEEE--CCEEEEECHHhC
Confidence 5677777777889999985 779999999985
No 101
>KOG4257|consensus
Probab=84.56 E-value=0.52 Score=50.85 Aligned_cols=54 Identities=4% Similarity=-0.014 Sum_probs=42.0
Q ss_pred ccCccc------------hhHHHHHHhhcc----cchhhhhhhhchhcccccc-cccccc--ccccccchhHHHh
Q psy8552 340 SEPFKF------------TSVVELINYYKH----ESLSQYNSTLDTRLLYPVS-RFSSDV--DADIHSNDVDKYI 395 (523)
Q Consensus 340 ~~~~~~------------~~~~~avk~~~~----~~l~~~~~e~~ar~m~~l~-~~~~~l--~k~~~~~w~~~r~ 395 (523)
.|+||. +...||||+||. ++-+.|+.| |-+|+.+. |+++++ +-...+.|....+
T Consensus 399 ~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqE--a~iMrnfdHphIikLIGv~~e~P~WivmEL 471 (974)
T KOG4257|consen 399 EGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQE--ASIMRNFDHPHIIKLIGVCVEQPMWIVMEL 471 (974)
T ss_pred CCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHH--HHHHHhCCCcchhheeeeeeccceeEEEec
Confidence 677887 567899999995 355669999 89999999 999999 4455667766433
No 102
>KOG3508|consensus
Probab=82.76 E-value=0.035 Score=62.01 Aligned_cols=54 Identities=15% Similarity=0.329 Sum_probs=44.4
Q ss_pred CCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEE-CCeeEEEEEEE
Q psy8552 215 AEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRK-GGTNKLIKIFH 268 (523)
Q Consensus 215 ~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~-~~~v~h~~I~~ 268 (523)
..||||++.|.-++..+.. ...|.++||++...++.+++++-. -+.+.|+++..
T Consensus 81 ~~~~~~~lrr~i~e~r~r~~e~s~~~wi~e~~~lp~~~~l~~~~~~d~~l~~r~~s 136 (932)
T KOG3508|consen 81 RKWYMENLRRTIAESRLRRAENSGSYWIREAKRLPGKGKLSCLLQLDGTLYARTIS 136 (932)
T ss_pred hhhhhcchhhhcccchhhccCCceeEEeeccCcCCCcceeehhhccchhHHhhhhh
Confidence 4799999999999999765 477999999999999999998763 23377888764
No 103
>KOG1449|consensus
Probab=79.54 E-value=0.61 Score=49.41 Aligned_cols=118 Identities=10% Similarity=0.127 Sum_probs=80.4
Q ss_pred cccccCCCCCCCCH-HHHHHHHHHhccCCCCCC-CccceEEecCChhHHHHHHHHHhCCCCCCCCC----CCCHHHHHHH
Q psy8552 9 LNKTDNVSSTTSPF-KSDNLKAASEHYSKPDCG-LSAANLFEPGNASQVAELFHAYSGEIKSYNFS----KLEPALLAIM 82 (523)
Q Consensus 9 L~~~~~~~~~~vP~-vv~~~i~~l~~~~~~~~G-l~~eGifR~~~~~~v~~l~~~~~~~~~~~~~~----~~d~~~va~l 82 (523)
|.......+..||. .+.+||.-+.+-+ .+.+ ++.+|.++++ +|.|.. .+.+ .-|+..+..+
T Consensus 214 ltr~~~~~G~~lpas~~g~~C~s~~~~~-q~~ei~~~~g~l~a~-----------~D~gae-~d~~af~~p~di~v~S~d 280 (670)
T KOG1449|consen 214 LTRMEVGLGRGLPASEWGRGCVSHHAVT-QHREILDGNGVLSAV-----------EDEGAE-VDGEAFRWPSDIVVESWD 280 (670)
T ss_pred ecceeeccccccchhhhccchhccccch-hccCCcccCcceecc-----------cccccc-ccccccCCccceeeeccc
Confidence 34455667888999 8888888777621 1112 3335667665 333332 2222 3367788899
Q ss_pred HHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q psy8552 83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146 (523)
Q Consensus 83 LK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~ 146 (523)
++-|.|++|.|+.- ...-+..+..+.+..++..+...++.|+.+-..|..||.+.+.
T Consensus 281 ~dp~s~Q~~pp~~~-------~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~ 337 (670)
T KOG1449|consen 281 MDPYSRQLPPPYPK-------EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCK 337 (670)
T ss_pred cChhhhhcCCCCcc-------cccccccCcccceeeeccccccCCcccchHhhhhchhhhhhcc
Confidence 99999999999443 1122234445566677778889999999999999999998887
No 104
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=77.51 E-value=12 Score=28.90 Aligned_cols=44 Identities=18% Similarity=0.376 Sum_probs=35.2
Q ss_pred CCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEEC
Q psy8552 215 AEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKG 258 (523)
Q Consensus 215 ~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~ 258 (523)
+|=|...|+=+|..+.|+. ...|+|+.|-|.++-|.+.+-+...
T Consensus 2 HpgY~AFlTYdevk~~L~~~~~kpGsYiFRlSCTrLGQWAIGyV~~ 47 (86)
T PF02762_consen 2 HPGYMAFLTYDEVKARLQHYRDKPGSYIFRLSCTRLGQWAIGYVTQ 47 (86)
T ss_dssp -TTBETT--HHHHHHHHGGGTTSTTEEEEEEESSSTTSEEEEEEET
T ss_pred CCceeEEEeHHHHHHHHHHHhCCcccEEEeeccccccceeEEEEcC
Confidence 4667889999999999985 4679999999999999999887753
No 105
>KOG4271|consensus
Probab=72.41 E-value=3.2 Score=46.68 Aligned_cols=142 Identities=8% Similarity=0.002 Sum_probs=92.4
Q ss_pred CCCCHHHHHHHHHHhccCCCCCCCccce---EEecCC-h-hHHHHHHHHHh-CCCCCCCCCC-CCHH--HHHHHHH--HH
Q psy8552 18 TTSPFKSDNLKAASEHYSKPDCGLSAAN---LFEPGN-A-SQVAELFHAYS-GEIKSYNFSK-LEPA--LLAIMLK--TY 86 (523)
Q Consensus 18 ~~vP~vv~~~i~~l~~~~~~~~Gl~~eG---ifR~~~-~-~~v~~l~~~~~-~~~~~~~~~~-~d~~--~va~lLK--~f 86 (523)
..-|.+..+-+.+|..+ |+..|| |-|.+. . ..|+.=...|+ .|.......+ .+|| .|...++ .-
T Consensus 369 d~sp~~~~knL~~l~~~-----Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~ 443 (1100)
T KOG4271|consen 369 DGSPNIDEKNLVILGKD-----GLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHS 443 (1100)
T ss_pred cCCcccchhhhhhhhhc-----ccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhh
Confidence 44699999999999999 888898 777773 3 55555555665 3443222222 3688 5788888 78
Q ss_pred HhhcCCCCCChhhHHHHHHH--hcCCChHHHHHHHH-HHHhh--cCHHHHH----HHHHHHHHHHHHHHhhhhcCCCCCc
Q psy8552 87 LKSLTEPLIPYVYYEKFVSL--LSGSNDRHIGSRLF-ALVQD--FPAHHFS----ALRYLMAHLARMCALQYARGVREPP 157 (523)
Q Consensus 87 lr~LpePli~~~~~~~~~~~--~~~~~~~~~~~~~~-~~l~~--Lp~~~~~----~L~~l~~~l~~v~~~~~~n~m~~~~ 157 (523)
||.++..+.+.....-+..+ +...-.+.++.+++ .+++. .|.+|+. ++..|+..+.-+..++..|.|+..
T Consensus 444 lr~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~- 522 (1100)
T KOG4271|consen 444 LRQQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPV- 522 (1100)
T ss_pred hhhcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChh-
Confidence 88888888887665544444 22333345666654 45555 6888887 555565566677778888888743
Q ss_pred cchhhhhc
Q psy8552 158 TILIQSFT 165 (523)
Q Consensus 158 ~~l~~~~~ 165 (523)
+..+.|.+
T Consensus 523 ~~s~aCkS 530 (1100)
T KOG4271|consen 523 LASAACKS 530 (1100)
T ss_pred hHHHHhcC
Confidence 33333433
No 106
>KOG1026|consensus
Probab=69.75 E-value=1.8 Score=48.21 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=40.0
Q ss_pred CCCCccccccc-----ccCccc-------------hhHHHHHHhhcccchh----hhhhhhchhcccccc-cccccc
Q psy8552 329 KNPAPGVLRTF-----SEPFKF-------------TSVVELINYYKHESLS----QYNSTLDTRLLYPVS-RFSSDV 382 (523)
Q Consensus 329 ~~~l~~~~~~~-----~~~~~~-------------~~~~~avk~~~~~~l~----~~~~e~~ar~m~~l~-~~~~~l 382 (523)
..++++....+ .|+||+ +...||||++++.+-. +|-+| |.+|.+|+ ||+|++
T Consensus 480 ~~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~RE--aeLla~l~H~nIVrL 554 (774)
T KOG1026|consen 480 VLEIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRRE--AELLAELQHPNIVRL 554 (774)
T ss_pred eeEechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHH--HHHHHhccCCCeEEE
Confidence 34566666666 556766 6779999999976544 38888 78999999 999999
No 107
>KOG3667|consensus
Probab=68.41 E-value=7.2 Score=42.70 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=55.8
Q ss_pred CCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCee-EEEEEE-EeCCeEEeCCCCcc-CCHHHH
Q psy8552 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTN-KLIKIF-HRNGRYGFSEPFKF-TSVVEL 287 (523)
Q Consensus 211 ~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v-~h~~I~-~~~~~~~~~~~~~F-~sl~~L 287 (523)
.+-+...--|.++++.+.++|...++|+|++|-|+...|..++......+- .|+.|. ...+.+.......+ ..+.-|
T Consensus 559 ~Lw~dg~Imgfinkq~~~~ll~~~~~GtflLrfs~S~~GgiT~~~v~~~~~~~~~~i~P~t~~~ls~~~l~d~i~~e~~L 638 (682)
T KOG3667|consen 559 PLWNDGVIMGFINKQQERALLMTKPDGTFLLRFSASEEGGITIAWVEDQKQNLIMMIMPFTKGDLSATSLADIIRDENPL 638 (682)
T ss_pred HHhhcceeeeecchhhhhhhhhcCCCCCceeeeeccccCceeEEecccccccceeEeccccccccccchhhhhccchhhh
Confidence 334445567899999999999999999999999988777777766643333 477777 45555554322222 344445
Q ss_pred HHHHhhCC
Q psy8552 288 INYYKHES 295 (523)
Q Consensus 288 V~~y~~~~ 295 (523)
.-+|....
T Consensus 639 ~~l~p~~~ 646 (682)
T KOG3667|consen 639 FYLYPDIP 646 (682)
T ss_pred hhhcCCcc
Confidence 55554433
No 108
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=63.34 E-value=0.87 Score=32.97 Aligned_cols=32 Identities=3% Similarity=-0.368 Sum_probs=25.3
Q ss_pred ccccccc-cccccchhHHHhhhhhcccccccccCC
Q psy8552 377 RFSSDVD-ADIHSNDVDKYINLKIAFTNLSGAVAS 410 (523)
Q Consensus 377 ~~~~~l~-k~~~~~w~~~r~~~~~~~g~~p~~~~~ 410 (523)
.+++.++ +....+||.++. .+..|++|.+++.
T Consensus 21 Gd~i~v~~~~~~~~ww~~~~--~g~~G~~P~~~v~ 53 (55)
T PF07653_consen 21 GDVIEVLGEKDDDGWWLGEN--NGRRGWFPSSYVE 53 (55)
T ss_dssp TEEEEEEEEECSTSEEEEEE--TTEEEEEEGGGEE
T ss_pred CCEEEEEEeecCCCEEEEEE--CCcEEEEcHHHEE
Confidence 6788887 556669999988 6788999998753
No 109
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=58.03 E-value=2.5 Score=29.58 Aligned_cols=33 Identities=3% Similarity=-0.266 Sum_probs=25.2
Q ss_pred ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552 377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS 410 (523)
Q Consensus 377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~ 410 (523)
.+.+.+.+..+.+||.++...+ ..|++|.+++.
T Consensus 21 Gd~v~v~~~~~~~w~~~~~~~~-~~G~vP~~~v~ 53 (54)
T cd00174 21 GDIIEVLEKSDDGWWEGRLLGG-KRGLFPSNYVE 53 (54)
T ss_pred CCEEEEEEcCCCCeEEEEECCC-CEEEEccccCc
Confidence 5666666666789999887666 88999988753
No 110
>KOG2199|consensus
Probab=56.07 E-value=3.9 Score=41.65 Aligned_cols=32 Identities=9% Similarity=-0.161 Sum_probs=27.7
Q ss_pred ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552 377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS 410 (523)
Q Consensus 377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~ 410 (523)
.+++-++.+.+.+||++++.. ..|.+|+|++.
T Consensus 237 GdIItVLd~s~~~WWKG~~~~--~~GlFPsnfVT 268 (462)
T KOG2199|consen 237 GDIITVLDDSDPNWWKGENHR--GIGLFPSNFVT 268 (462)
T ss_pred CcEEEEcccCCcchhccccCC--cccccchhhhh
Confidence 788888999999999998877 67999998853
No 111
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=55.80 E-value=11 Score=29.53 Aligned_cols=44 Identities=9% Similarity=0.118 Sum_probs=35.1
Q ss_pred ceEEecCChhHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhcCC
Q psy8552 44 ANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTE 92 (523)
Q Consensus 44 eGifR~~~~~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lpe 92 (523)
+|-|+++++..+.++.+.|+-. ++..+.++||+++-..|..+|.
T Consensus 5 ~~~~~v~G~~~l~~l~~~~~~~-----l~~~~~~Tl~G~i~~~l~~iP~ 48 (81)
T PF03471_consen 5 DGTYIVSGSTPLDDLNELLGLD-----LPEEDYDTLGGLILEQLGRIPE 48 (81)
T ss_dssp TSEEEEETTSBHHHHHHHHTS------TTTTTTSBHHHHHHHHHTSS--
T ss_pred CCEEEEEecCCHHHHHHHHCcC-----CCccchhhHHHHHHHHcCCCCC
Confidence 5789999999999999999874 3334667999999999999886
No 112
>PF07935 SSV1_ORF_D-335: ORF D-335-like protein; InterPro: IPR012922 The sequences featured in this family are similar to a probable integrase (P20214 from SWISSPROT) expressed by the SSV1 virus of the archaeon Sulfolobus shibatae. This protein may be necessary for the integration of the virus into the host genome by a process of site-specific recombination [].
Probab=48.89 E-value=57 Score=24.99 Aligned_cols=44 Identities=18% Similarity=0.122 Sum_probs=31.5
Q ss_pred CeEEeecCCCCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCC
Q psy8552 440 GTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANS 497 (523)
Q Consensus 440 G~FLvR~s~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~ 497 (523)
|.|.||+. .++-+-|+|+.+.+|..- .+.-.+|.++|+.|.+..
T Consensus 6 gd~~irE~-----------KGkYYVY~iE~~~~G~~r---e~YVGpL~~VVe~Yik~K 49 (72)
T PF07935_consen 6 GDIIIRER-----------KGKYYVYKIEKDINGERR---ETYVGPLDDVVETYIKLK 49 (72)
T ss_pred CcEEEEEe-----------CCeEEEEEEEeccCCcee---eeeeccHHHHHHHHHhcc
Confidence 66777664 455566788886666544 246689999999998874
No 113
>KOG0196|consensus
Probab=48.86 E-value=4.2 Score=45.33 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=34.5
Q ss_pred ccCccc-----------hhHHHHHHhhcccchhh----hhhhhchhcccccc-cccccc
Q psy8552 340 SEPFKF-----------TSVVELINYYKHESLSQ----YNSTLDTRLLYPVS-RFSSDV 382 (523)
Q Consensus 340 ~~~~~~-----------~~~~~avk~~~~~~l~~----~~~e~~ar~m~~l~-~~~~~l 382 (523)
.|+||+ ....||||++|...-+. |+.| |.||..++ ||++.+
T Consensus 639 aGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~E--AsIMGQFdHPNIIrL 695 (996)
T KOG0196|consen 639 AGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSE--ASIMGQFDHPNIIRL 695 (996)
T ss_pred cccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhh--hhhcccCCCCcEEEE
Confidence 678887 56789999999764444 8999 89999999 999998
No 114
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=47.59 E-value=3.2 Score=29.42 Aligned_cols=32 Identities=3% Similarity=-0.312 Sum_probs=24.8
Q ss_pred ccccccccccccchhHHHhhhhhcccccccccC
Q psy8552 377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVA 409 (523)
Q Consensus 377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~ 409 (523)
.+.+.+.+....+||.++... ++.|++|.++.
T Consensus 24 Gd~v~v~~~~~~~w~~~~~~~-~~~G~vP~~~v 55 (58)
T smart00326 24 GDIITVLEKSDDGWWKGRLGR-GKEGLFPSNYV 55 (58)
T ss_pred CCEEEEEEcCCCCeEEEEeCC-CCEEEEchHHE
Confidence 566677666688999988776 78899998764
No 115
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=45.64 E-value=22 Score=28.63 Aligned_cols=30 Identities=43% Similarity=0.767 Sum_probs=26.0
Q ss_pred hcCCCCceEEEEcCCCCCCcEEEEEEECCe
Q psy8552 231 LADTADGTFLVRDTSTKNGEYTLTLRKGGT 260 (523)
Q Consensus 231 L~~~~~G~FLVR~s~~~~g~f~LSv~~~~~ 260 (523)
+.+..+|+|.|+......|.|.|++.++++
T Consensus 50 v~d~~dGty~v~y~P~~~G~~~i~V~~~g~ 79 (93)
T smart00557 50 VKDNGDGTYTVSYTPTEPGDYTVTVKFGGE 79 (93)
T ss_pred EEeCCCCEEEEEEEeCCCEeEEEEEEECCE
Confidence 456789999999999889999999998774
No 116
>KOG0515|consensus
Probab=44.74 E-value=9.9 Score=40.29 Aligned_cols=26 Identities=4% Similarity=-0.168 Sum_probs=20.5
Q ss_pred cccccchhHHHhhhhhcccccccccCCC
Q psy8552 384 ADIHSNDVDKYINLKIAFTNLSGAVAST 411 (523)
Q Consensus 384 k~~~~~w~~~r~~~~~~~g~~p~~~~~~ 411 (523)
...+.+||.++++. ++||+|.++..-
T Consensus 715 d~~eteWWwa~lng--~eGyVPRnylgL 740 (752)
T KOG0515|consen 715 DEVETEWWWARLNG--EEGYVPRNYLGL 740 (752)
T ss_pred CcchhhhhhHhhcC--cccccchhhhhc
Confidence 34577999999655 899999998543
No 117
>KOG1029|consensus
Probab=43.24 E-value=13 Score=41.28 Aligned_cols=33 Identities=6% Similarity=-0.290 Sum_probs=28.1
Q ss_pred ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552 377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST 411 (523)
Q Consensus 377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~ 411 (523)
.+++.+...++.+||.+.++ +..|.+|+||+..
T Consensus 1075 gdiI~VlnkdepeWW~Ge~n--g~sGLFPSNYV~k 1107 (1118)
T KOG1029|consen 1075 GDIINVLNKDEPEWWSGERN--GKSGLFPSNYVQK 1107 (1118)
T ss_pred CCEEEecCCCChhhhccccc--CccccCccccccc
Confidence 57777788899999999888 5899999999854
No 118
>KOG1094|consensus
Probab=41.66 E-value=5.3 Score=43.16 Aligned_cols=41 Identities=5% Similarity=0.112 Sum_probs=33.8
Q ss_pred ccCccc-------hhHHHHHHhhcccc----hhhhhhhhchhcccccc-cccccc
Q psy8552 340 SEPFKF-------TSVVELINYYKHES----LSQYNSTLDTRLLYPVS-RFSSDV 382 (523)
Q Consensus 340 ~~~~~~-------~~~~~avk~~~~~~----l~~~~~e~~ar~m~~l~-~~~~~l 382 (523)
.|+||+ .+..||+|+++.++ ..+|.+| +++|..|+ ||++++
T Consensus 548 eGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kE--IkiLsqLkhPNIveL 600 (807)
T KOG1094|consen 548 EGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKE--IKILSRLKHPNIVEL 600 (807)
T ss_pred CcccceeEEEEecCceEEEEeecCcccchhHHHHHHHH--HHHHhccCCCCeeEE
Confidence 678888 45789999999653 3448999 79999999 999999
No 119
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=38.83 E-value=1.4e+02 Score=23.38 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=30.7
Q ss_pred cccc-cCCHHHHHHHhcC--CCCCeEEeecCC--CCceEEEEEEC
Q psy8552 420 TWLV-RMSRAQAEALLSG--RPDGTFLIRPST--TGQYALSIVCS 459 (523)
Q Consensus 420 ~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~--~~~~~Ls~~~~ 459 (523)
|=|. .|+=+|..+.|+. ...|+|+.|-|. -|.++|-++..
T Consensus 3 pgY~AFlTYdevk~~L~~~~~kpGsYiFRlSCTrLGQWAIGyV~~ 47 (86)
T PF02762_consen 3 PGYMAFLTYDEVKARLQHYRDKPGSYIFRLSCTRLGQWAIGYVTQ 47 (86)
T ss_dssp TTBETT--HHHHHHHHGGGTTSTTEEEEEEESSSTTSEEEEEEET
T ss_pred CceeEEEeHHHHHHHHHHHhCCcccEEEeeccccccceeEEEEcC
Confidence 4466 7889999999964 347999999998 89999988763
No 120
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=35.79 E-value=80 Score=25.21 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=39.1
Q ss_pred EEecC--ChhHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhc---------------CCCCCChhhHHHHH
Q psy8552 46 LFEPG--NASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSL---------------TEPLIPYVYYEKFV 104 (523)
Q Consensus 46 ifR~~--~~~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~L---------------pePli~~~~~~~~~ 104 (523)
-||-+ ....++++...+.....+ +--+-.++++-|.|..|| ..||-|..+.+.|.
T Consensus 11 ~~Rra~f~k~~iKr~~~~~~~~~v~----~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~r 82 (85)
T cd08048 11 MFRRSSFPKAAIKRLIQSVTGQSVS----QNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYR 82 (85)
T ss_pred HHHHhhccHHHHHHHHHHHcCCCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHH
Confidence 46665 448888887776653321 222677999999999998 78888887776654
No 121
>KOG0162|consensus
Probab=33.72 E-value=21 Score=39.49 Aligned_cols=32 Identities=9% Similarity=-0.189 Sum_probs=26.7
Q ss_pred ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552 377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS 410 (523)
Q Consensus 377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~ 410 (523)
.+++.+.+++.+.||.++... .+|++|.+|..
T Consensus 1073 ~diIei~~edpSGWw~gk~~~--keG~~P~~Yv~ 1104 (1106)
T KOG0162|consen 1073 GDIIEIMREDPSGWWLGKLNG--KEGLFPGNYVT 1104 (1106)
T ss_pred CCEEEEeccCCCcchhhccCC--ccccccccccc
Confidence 577788889999999999544 89999999864
No 122
>KOG4370|consensus
Probab=33.22 E-value=74 Score=33.06 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHhc
Q psy8552 72 SKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLS 108 (523)
Q Consensus 72 ~~~d~~~va~lLK~flr~LpePli~~~~~~~~~~~~~ 108 (523)
...|+|..+++.|.|+|..|||++|-++-..+-+|.+
T Consensus 116 ~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci~ 152 (514)
T KOG4370|consen 116 IFADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCIR 152 (514)
T ss_pred hHHHHHHHHhHHHHhhhccCCccccccchHHHHHHhh
Confidence 3458999999999999999999999888777766663
No 123
>KOG3812|consensus
Probab=29.11 E-value=28 Score=34.95 Aligned_cols=23 Identities=4% Similarity=-0.165 Sum_probs=18.1
Q ss_pred cccchhHHHhhhhh-ccccccccc
Q psy8552 386 IHSNDVDKYINLKI-AFTNLSGAV 408 (523)
Q Consensus 386 ~~~~w~~~r~~~~~-~~g~~p~~~ 408 (523)
=+.+||.+|+++.+ +-||+|++.
T Consensus 96 ynnDWWIGRlVkeg~e~gFiPsp~ 119 (475)
T KOG3812|consen 96 YNNDWWIGRLVKEGCEIGFIPSPV 119 (475)
T ss_pred cccchhHHHHhhcCCccccccchH
Confidence 46699999998876 679999643
No 124
>KOG1118|consensus
Probab=27.26 E-value=25 Score=34.81 Aligned_cols=33 Identities=6% Similarity=-0.193 Sum_probs=28.2
Q ss_pred ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552 377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST 411 (523)
Q Consensus 377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~ 411 (523)
.+++.+.+..+.+||.++... +.|++|.||...
T Consensus 328 GDlI~l~~QIdenWyeG~~~g--~sG~FPvnYv~v 360 (366)
T KOG1118|consen 328 GDLITLTNQIDENWYEGEKHG--ESGMFPVNYVEV 360 (366)
T ss_pred CceeeehhhcCcchhhheecC--ccCccccceeEE
Confidence 778888888999999988776 589999999654
No 125
>KOG1785|consensus
Probab=26.71 E-value=76 Score=32.63 Aligned_cols=44 Identities=18% Similarity=0.389 Sum_probs=37.8
Q ss_pred CCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEEC
Q psy8552 215 AEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKG 258 (523)
Q Consensus 215 ~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~ 258 (523)
+|=|...++-+|..+.|++ ...|+|+.|-|.++.|.+.+-+...
T Consensus 256 HPGYmAFLTYDEVk~RLqk~~~KpGSYIFRlSCTRlGQWAIGYVt~ 301 (563)
T KOG1785|consen 256 HPGYMAFLTYDEVKARLQKYIKKPGSYIFRLSCTRLGQWAIGYVTA 301 (563)
T ss_pred CCceeEEeeHHHHHHHHHHHhcCCCceEEeeccCcccceeEEEEcC
Confidence 5667888999999999986 4689999999999999999988743
No 126
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=26.54 E-value=58 Score=26.23 Aligned_cols=28 Identities=36% Similarity=0.700 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCCCcEEEEEEECCe
Q psy8552 233 DTADGTFLVRDTSTKNGEYTLTLRKGGT 260 (523)
Q Consensus 233 ~~~~G~FLVR~s~~~~g~f~LSv~~~~~ 260 (523)
+..+|+|.|+.....+|.|.|+|.+++.
T Consensus 66 ~~~~G~y~v~y~p~~~G~y~i~V~~~g~ 93 (101)
T PF00630_consen 66 DNGDGTYTVSYTPTEPGKYKISVKINGQ 93 (101)
T ss_dssp EESSSEEEEEEEESSSEEEEEEEEESSE
T ss_pred ECCCCEEEEEEEeCccEeEEEEEEECCE
Confidence 4568999999888888999999998764
No 127
>COG4835 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.32 E-value=51 Score=27.39 Aligned_cols=43 Identities=26% Similarity=0.171 Sum_probs=34.5
Q ss_pred EEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q psy8552 46 LFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSL 90 (523)
Q Consensus 46 ifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~L 90 (523)
-|+++|. +++..++..+-.... +++..++..+|.=|-.+++.|
T Consensus 63 nfvisG~ISqi~~i~~~iv~e~s--eleqeeve~La~Plld~lkRL 106 (124)
T COG4835 63 NFVISGRISQINQIKDRIVKEPS--ELEQEEVEGLAAPLLDMLKRL 106 (124)
T ss_pred eeEEeeehHHHHHHHhHhccCHH--HhhHHHHHHHHHHHHHHHHHh
Confidence 4899966 999999999987654 677778888888887777764
No 128
>PF12491 ApoB100_C: Apolipoprotein B100 C terminal; InterPro: IPR022176 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.
Probab=23.71 E-value=2.8e+02 Score=20.26 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=17.9
Q ss_pred HhhcCHHHH-HHHHHHHHHHHHHHH
Q psy8552 123 VQDFPAHHF-SALRYLMAHLARMCA 146 (523)
Q Consensus 123 l~~Lp~~~~-~~L~~l~~~l~~v~~ 146 (523)
+-.|...|+ ..|+|+.++|.++..
T Consensus 27 LIDLsIqnY~~Fl~yi~eLL~~lq~ 51 (58)
T PF12491_consen 27 LIDLSIQNYHMFLRYITELLKELQS 51 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777 457899999988876
No 129
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=20.75 E-value=1.7e+02 Score=20.93 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=24.4
Q ss_pred CCCChhhHHHHHHHhcCCChHHHHHHHHHHH
Q psy8552 93 PLIPYVYYEKFVSLLSGSNDRHIGSRLFALV 123 (523)
Q Consensus 93 Pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l 123 (523)
|+||.++-+.+++.+.....+.++..+-++.
T Consensus 1 P~IPD~v~~~yL~~~G~~~~D~rv~RLvSLa 31 (51)
T PF03540_consen 1 PTIPDEVTDYYLERSGFQTSDPRVKRLVSLA 31 (51)
T ss_pred CCCCHHHHHHHHHHCCCCCCCHhHHHHHHHH
Confidence 8899999999999999777777776654433
Done!