RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8552
(523 letters)
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 157 bits (400), Expect = 1e-46
Identities = 78/108 (72%), Positives = 96/108 (88%), Gaps = 1/108 (0%)
Query: 208 ETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKI 266
SL++AEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NKLIKI
Sbjct: 4 NNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKI 63
Query: 267 FHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRF 314
FHR+G+YGFS+P F+SVVELIN+Y++ESL+QYN LD +LLYPVS++
Sbjct: 64 FHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKY 111
Score = 100 bits (251), Expect = 2e-25
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
+SR + L DGTFL+R ++T G Y L++ G K ++ + +GF++P
Sbjct: 17 DISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL 76
Query: 481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ S+ L+ HY SL ++N L L YPV
Sbjct: 77 T-FSSVVELINHYRNESLAQYNPKLDVKLLYPV 108
Score = 63.1 bits (154), Expect = 2e-12
Identities = 26/41 (63%), Positives = 35/41 (85%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRF 378
FS+P F+SVVELIN+Y++ESL+QYN LD +LLYPVS++
Sbjct: 71 GFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKY 111
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 155 bits (392), Expect = 1e-42
Identities = 79/108 (73%), Positives = 96/108 (88%), Gaps = 1/108 (0%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKN-GEYTLTLRKGGTNKLIKIFHR 269
SL++AEWYWGDISR++VN+KL DTADGTFLVRD STK G+YTLTLRKGG NKLIKIFHR
Sbjct: 6 SLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHR 65
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
+G+YGFS+P F+SVVELIN+Y++ESL+QYN LD +LLYPVS++ D
Sbjct: 66 DGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 113
Score = 98.8 bits (245), Expect = 1e-22
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
+SR + L DGTFL+R ++T G Y L++ G K ++ + +GF++P
Sbjct: 16 DISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL 75
Query: 481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ S+ L+ HY SL ++N L L YPV
Sbjct: 76 T-FSSVVELINHYRNESLAQYNPKLDVKLLYPV 107
Score = 98.0 bits (243), Expect = 2e-22
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 418 EKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFG 475
EKTW V +R +AE LL G+ DGTFL+R S+ G YA S+V G KHC++ +T G+G
Sbjct: 300 EKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYG 359
Query: 476 FAEPFNIYPSLGAL 489
FAEP+N+Y SL L
Sbjct: 360 FAEPYNLYSSLKEL 373
Score = 84.1 bits (207), Expect = 8e-18
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 203 MSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNK 262
+ + + W G +R+ + L DGTFLVR+ S+K G Y ++ G K
Sbjct: 289 VEDDEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRE-SSKQGCYACSVVVDGEVK 347
Query: 263 LIKIFHRNGRYGFSEPFK-FTSVVEL 287
I YGF+EP+ ++S+ EL
Sbjct: 348 HCVINKTATGYGFAEPYNLYSSLKEL 373
Score = 59.8 bits (144), Expect = 8e-10
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 381
FS+P F+SVVELIN+Y++ESL+QYN LD +LLYPVS++ D
Sbjct: 70 GFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 113
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 139 bits (353), Expect = 6e-40
Identities = 29/103 (28%), Positives = 52/103 (50%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRN 270
W+ G++ R ++ L A GT+L+R+ + + ++++ K IK+ ++
Sbjct: 12 DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKD 71
Query: 271 GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+E KF S++EL+ YY+ SL + LDT L YP S
Sbjct: 72 NWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSG 114
Score = 113 bits (284), Expect = 4e-30
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 405 SGAVAST-VDFESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSG 460
SG+ S +D+ + W M R Q + LL GT+LIR ++A+SI +
Sbjct: 3 SGSSGSREIDYTA--YPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFND 60
Query: 461 APKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 519
KH V E + E + SL LV +Y +SL+E L TTL YP P+SG
Sbjct: 61 EVKHIKVVEKDNWIHITEAKK-FDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGPSSG 118
Score = 57.3 bits (139), Expect = 2e-10
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+E KF S++EL+ YY+ SL + LDT L YP S
Sbjct: 75 HITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSG 114
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Length = 138
Score = 139 bits (353), Expect = 1e-39
Identities = 33/104 (31%), Positives = 48/104 (46%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR 269
L WY G + R LA+ +DGTFLVR E+ ++++ K IKI
Sbjct: 21 QDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTA 80
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
G Y +E F + EL+ +Y+ SL +LDT L +P
Sbjct: 81 EGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 124
Score = 105 bits (265), Expect = 3e-27
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
M RA AE++L+ R DGTFL+R ++A+SI + KH + E + E
Sbjct: 32 PMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEK-K 90
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ L LV Y NSL++ L TTL +P
Sbjct: 91 AFRGLTELVEFYQQNSLKDCFKSLDTTLQFPF 122
Score = 53.5 bits (129), Expect = 7e-09
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+E F + EL+ +Y+ SL +LDT L +P
Sbjct: 85 RITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 124
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 135 bits (341), Expect = 5e-38
Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 195 QSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLT 254
QSS + S E L WYWG I+R + KLA+ DG+FLVRD+S +L+
Sbjct: 4 QSSGPMDVTSLTEELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLS 63
Query: 255 LRKGGTNKLIKIFHRNGRYGF---SEPFKFTSVVELINYYKHESLS----------QYNS 301
R G +I H NGR+ F + TS+V+LI + +S + ++
Sbjct: 64 FRSHGKTLHTRIEHSNGRFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSA 123
Query: 302 TLDTRLLYPVSRFSS 316
T RL PVSRF
Sbjct: 124 TYPVRLTNPVSRFMQ 138
Score = 78.7 bits (194), Expect = 1e-17
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP--F 480
++R +AE L+ PDG+FL+R S+ +LS G H + + F F E
Sbjct: 31 ITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGRFSFYEQPDV 90
Query: 481 NIYPSLGALVLHYAANSL----------EEHNDDLKTTLAYPV 513
+ S+ L+ H +S + L PV
Sbjct: 91 EGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATYPVRLTNPV 133
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 129 bits (326), Expect = 3e-36
Identities = 56/101 (55%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Query: 418 EKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFG 475
EKTW V +R +AE LL G+ DGTFL+R S+ G YA S+V G KHC++ +T G+G
Sbjct: 9 EKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYG 68
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
FAEP+N+Y SL LVLHY SL +HND L TLAYPV+A
Sbjct: 69 FAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYAQ 109
Score = 118 bits (297), Expect = 4e-32
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 206 GPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIK 265
G + W G +R+ + L DGTFLVR+ S+K G Y ++ G K
Sbjct: 1 GSPIPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRE-SSKQGCYACSVVVDGEVKHCV 59
Query: 266 IFHRNGRYGFSEPFK-FTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
I YGF+EP+ ++S+ EL+ +Y+H SL Q+N +L+ L YPV
Sbjct: 60 INKTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108
Score = 48.8 bits (117), Expect = 1e-07
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
++S+ EL+ +Y+H SL Q+N +L+ L YPV
Sbjct: 75 LYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 135 bits (340), Expect = 4e-36
Identities = 59/101 (58%), Positives = 73/101 (72%), Gaps = 2/101 (1%)
Query: 418 EKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFG 475
E+TW V +++R QAE +LSG+ DGTFLIR S+ G YA S+V G KHC++Y T GFG
Sbjct: 193 ERTWYVGKINRTQAEEMLSGKRDGTFLIRESSQRGCYACSVVVDGDTKHCVIYRTATGFG 252
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
FAEP+N+Y SL LVLHY SL +HND L TLA+PV AP
Sbjct: 253 FAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRAP 293
Score = 119 bits (299), Expect = 2e-30
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKL 263
+ WY G I+R + L+ DGTFL+R+ S++ G Y ++ G K
Sbjct: 183 EDEDALPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRE-SSQRGCYACSVVVDGDTKH 241
Query: 264 IKIFHRNGRYGFSEPF-KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
I+ +GF+EP+ + S+ EL+ +Y+H SL Q+N L L +PV
Sbjct: 242 CVIYRTATGFGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRA 292
Score = 50.8 bits (121), Expect = 4e-07
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 340 SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+ S+ EL+ +Y+H SL Q+N L L +PV
Sbjct: 255 EPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRA 292
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 125 bits (315), Expect = 6e-34
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
L WYWG ++ ++ +KL + +GTFL+RD+S + T++++ ++I
Sbjct: 9 KALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRI 68
Query: 267 FHRNGRYGF-------SEPFKFTSVVELINYYKHESLS-------QYNSTLDTRLLYPVS 312
+++G++ S+ +F SVV LI+YY N T+ L P+
Sbjct: 69 EYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLY 128
Query: 313 R 313
Sbjct: 129 T 129
Score = 77.6 bits (191), Expect = 5e-17
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
M+ +A+ L P+GTFLIR S+ +S+ S P + + + F +
Sbjct: 24 MTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIICV 83
Query: 483 ------YPSLGALVLHYAANSLE-------EHNDDLKTTLAYPVF 514
+ S+ L+ +Y + N + L P++
Sbjct: 84 KSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLY 128
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 125 bits (316), Expect = 7e-34
Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 14/145 (9%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
P+ + + YWG + + L +GTFL+RD++ ++ ++++ R+ + +I
Sbjct: 26 PDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARI 85
Query: 267 FHRNGRYGF----SEPFKFTSVVELINYYKHESLSQYNSTLDTRLL---YPVS-----RF 314
N + F F + L+ +YK S + L + L +P S R
Sbjct: 86 EQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIRTFPFSLQHICRT 145
Query: 315 SSDVDADIHSNDVDKNPAPGVLRTF 339
+ + +D P P ++ +
Sbjct: 146 V--ICNCTTYDGIDALPIPSSMKLY 168
Score = 76.8 bits (189), Expect = 2e-16
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAE--- 478
M + AEALL G+P+GTFL+R S +++S H + + F F
Sbjct: 40 VMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDP 99
Query: 479 PFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
P + L+ HY S + L+ P+
Sbjct: 100 CVFHSPDITGLLEHYKDPSACMFF---EPLLSTPL 131
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain,
signaling protein, structural genomics, joint CE
structural genomics, JCSG; 1.50A {Homo sapiens} PDB:
1jwo_A
Length = 98
Score = 117 bits (296), Expect = 4e-32
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG 271
L W+ G IS + +L DG FLVR+++ G+Y L + G ++ HR+G
Sbjct: 2 LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDG 61
Query: 272 RYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
E F ++++++ +Y + + + T+L+ P +
Sbjct: 62 HLTIDEAVFFCNLMDMVEHYSKDKGA-----ICTKLVRPKRK 98
Score = 82.6 bits (205), Expect = 1e-19
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
++S +A L DG FL+R S G Y L + H V + E
Sbjct: 11 KISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEA-V 69
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ +L +V HY + + T L P
Sbjct: 70 FFCNLMDMVEHY-----SKDKGAICTKLVRPK 96
Score = 41.0 bits (97), Expect = 6e-05
Identities = 7/40 (17%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
T E F ++++++ +Y + + + T+L+ P +
Sbjct: 64 TIDEAVFFCNLMDMVEHYSKDKGA-----ICTKLVRPKRK 98
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced,
ATP-binding, cell membrane, cytoplasm, membrane,
nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens}
PDB: 3eac_A
Length = 106
Score = 116 bits (293), Expect = 2e-31
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
L W+ G I+R+ L G FLVR+++ G+YTL + G + +I +
Sbjct: 2 GTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMY 61
Query: 269 RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+ E F ++++L+ +Y ++ L TRL+ P
Sbjct: 62 HASKLSIDEEVYFENLMQLVEHYTSDADG-----LCTRLIKPKVM 101
Score = 82.3 bits (204), Expect = 2e-19
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+++R QAE LL G FL+R ST G Y L + G +H + E
Sbjct: 14 KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSIDEE-V 72
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ +L LV HY D L T L P
Sbjct: 73 YFENLMQLVEHY-----TSDADGLCTRLIKPK 99
Score = 39.5 bits (93), Expect = 3e-04
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+ E F ++++L+ +Y ++ L TRL+ P
Sbjct: 67 SIDEEVYFENLMQLVEHYTSDADG-----LCTRLIKPKVM 101
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 117 bits (294), Expect = 2e-31
Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 7/140 (5%)
Query: 183 SPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVR 242
S P T + + S L+++ +YW ++ + N L+ GTFL+R
Sbjct: 2 SEFPLDTSLRLKTFSSKSEYQLVVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIR 61
Query: 243 DTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF-------SEPFKFTSVVELINYYKHES 295
D+S + +TL+++ K ++I G + +F V++L+++Y
Sbjct: 62 DSSDQRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQ 121
Query: 296 LSQYNSTLDTRLLYPVSRFS 315
++ +Y
Sbjct: 122 ALPGSTPKRAYYIYSGGEKI 141
Score = 73.9 bits (181), Expect = 8e-16
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 8/101 (7%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF----- 476
++ +A LLS P GTFLIR S+ + LS+ K+ + F
Sbjct: 40 AVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPR 99
Query: 477 -AEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
+P + + LV HY + + Y
Sbjct: 100 STQPVPRFDXVLKLVHHYMPPQALPGSTPKRAYYIYSGGEK 140
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain;
HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1
PDB: 1csy_A* 1csz_A*
Length = 254
Score = 120 bits (302), Expect = 4e-31
Identities = 47/308 (15%), Positives = 87/308 (28%), Gaps = 62/308 (20%)
Query: 211 SLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF- 267
S +++G+I+R++ D L +DG +L+R + G + L++ G I
Sbjct: 1 SANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIER 60
Query: 268 HRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDV 327
NG Y + S +L +Y+ ES L L P
Sbjct: 61 ELNGTYAIAGGRTHASPADLCHYHSQESDG-----LVCLLKKPF---------------- 99
Query: 328 DKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIH 387
+ F + E + + + + + A
Sbjct: 100 -----NRPQGVQPKTGPFEDLKENLIREYVKQTWNLQGQALEQAIISQKPQLEKLIATTA 154
Query: 388 SNDVDKYINLKIAFTNLSGAVASTVDFESGEK--TWLVRMSRAQAEALLSGRPDGTFLIR 445
+ + +S + + + +L+R
Sbjct: 155 HEKMPWF------HGKISREESEQIVLIGSKTNGKFLIRAR------------------- 189
Query: 446 PSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDL 505
G YAL ++ G H + + + G + +L LV HY D L
Sbjct: 190 -DNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHY-----SYKADGL 243
Query: 506 KTTLAYPV 513
L P
Sbjct: 244 LRVLTVPC 251
Score = 84.6 bits (209), Expect = 1e-18
Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 9/129 (6%)
Query: 188 ATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTS 245
+ ++ T + W+ G ISR++ + +G FL+R
Sbjct: 131 QGQALEQAIISQKPQLEKLIATTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRA-R 189
Query: 246 TKNGEYTLTLRKGGTNKLIKIF-HRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLD 304
NG Y L L G +I + G+ E KF ++ +L+ +Y +++ L
Sbjct: 190 DNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKADG-----LL 244
Query: 305 TRLLYPVSR 313
L P +
Sbjct: 245 RVLTVPCQK 253
Score = 80.7 bits (199), Expect = 2e-17
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 479
++R +AE L G DG +L+R S G +ALS+ H + G
Sbjct: 11 NITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAG 70
Query: 480 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
+ S L +++ S D L L P P
Sbjct: 71 GRTHASPADLCHYHSQES-----DGLVCLLKKPFNRP 102
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 117 bits (293), Expect = 6e-31
Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
L+++ +YW ++ + N L+ GTFL+RD+S + +TL+++ K ++I
Sbjct: 15 NAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRI 74
Query: 267 FHRNGRYGF-------SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFS 315
G + +F V++L+++Y + + P S
Sbjct: 75 QCEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGTP---SFSLPPTEPSSEVP 127
Score = 71.2 bits (174), Expect = 8e-15
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF------ 476
++ +A LLS P GTFLIR S+ + LS+ K+ + F
Sbjct: 30 VTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQSDPRS 89
Query: 477 AEPFNIYPSLGALVLHYAANSL 498
+P + + LV HY
Sbjct: 90 TQPVPRFDCVLKLVHHYMPPPG 111
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2;
SH2, phosphoinositide phospholipase C, PLC-gamma-2,
phospholipase C-gamma-2; NMR {Rattus norvegicus}
Length = 124
Score = 110 bits (277), Expect = 3e-29
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIK 265
P N WY+ +SR + D L DG FL+R Y +T R G K +
Sbjct: 11 PNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRK-REGTDSYAITFRARGKVKHCR 69
Query: 266 IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
I + F S+VEL++YY+ +L RL YPV+
Sbjct: 70 INRDGRHFVLGTSAYFESLVELVSYYEKHALY-----RKMRLRYPVTP 112
Score = 86.9 bits (216), Expect = 9e-21
Identities = 39/109 (35%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 408 VASTVDFESGEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPS-TTGQYALSIVCSGAPKH 464
V + ES K W R+SR +AE +L P DG FLIR T YA++ G KH
Sbjct: 10 VPNPNPHES--KPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTDSYAITFRARGKVKH 67
Query: 465 CLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
C + R F + SL LV +Y E+H K L YPV
Sbjct: 68 CRINRDGRHFVLGTSAY-FESLVELVSYY-----EKHALYRKMRLRYPV 110
Score = 44.2 bits (105), Expect = 8e-06
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
F S+VEL++YY+ +L RL YPV+
Sbjct: 78 VLGTSAYFESLVELVSYYEKHALY-----RKMRLRYPVTP 112
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 108 bits (271), Expect = 2e-28
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR 269
+ LR W+ G +SR + L +G FLVR+++T G+Y LT + G K + +
Sbjct: 2 SQLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDP 59
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
G + +F SV LI+Y+ L ++ + L PV R
Sbjct: 60 EGVVRTKDH-RFESVSHLISYHMDNHLPIISAGSELCLQQPVER 102
Score = 77.7 bits (192), Expect = 1e-17
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
++SR +AEALL + +G FL+R STT GQY L+ + SG PKH L+ + E +
Sbjct: 13 KLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHR- 69
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ S+ L+ ++ N L + + L PV
Sbjct: 70 -FESVSHLISYHMDNHLPIISAGSELCLQQPV 100
Score = 40.7 bits (96), Expect = 8e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+F SV LI+Y+ L ++ + L PV R
Sbjct: 69 RFESVSHLISYHMDNHLPIISAGSELCLQQPVER 102
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 106 bits (267), Expect = 7e-28
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
+ + W+ +I+ + + L DG+FL R + + G++TL++R+ G IKI +
Sbjct: 2 SHMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQN 61
Query: 269 RNGRYGFSEPFKFTSVVELINYYKHESLS-QYNSTLDTRLLYPVSR 313
Y KF ++ EL+ YY + + L YP++
Sbjct: 62 TGDYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNC 107
Score = 80.8 bits (200), Expect = 8e-19
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 424 RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
++ +AE LL R DG+FL RPS + G + LS+ +GA H + T +
Sbjct: 13 NITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGG- 71
Query: 481 NIYPSLGALVLHYAANSLEEHNDD-LKTTLAYPV 513
+ +L LV +Y + + + L YP+
Sbjct: 72 EKFATLAELVQYYMEHHGQLKEKNGDVIELKYPL 105
Score = 40.7 bits (96), Expect = 1e-04
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 338 TFSEPFKFTSVVELINYYKHESLS-QYNSTLDTRLLYPVSR 377
KF ++ EL+ YY + + L YP++
Sbjct: 67 DLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNC 107
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution structure,
backbone dynamics, transferase; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 100
Score = 104 bits (263), Expect = 2e-27
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 216 EWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGR 272
W++G ISR + +L A G FL+R + + +Y L++R + KI+ R GR
Sbjct: 3 PWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGR 62
Query: 273 YGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+E F S+ EL+NY++ +SLS RL P +
Sbjct: 63 LHLNEAVSFLSLPELVNYHRAQSLS-----HGLRLAAPCRK 98
Score = 77.2 bits (191), Expect = 1e-17
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 424 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 479
+SR++A L G G FLIR S Y LS+ + A +H ++ G
Sbjct: 8 CISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNE 67
Query: 480 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ SL LV ++ + LA P
Sbjct: 68 AVSFLSLPELVNYH-----RAQSLSHGLRLAAPC 96
Score = 41.8 bits (99), Expect = 4e-05
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+E F S+ EL+NY++ +SLS RL P +
Sbjct: 64 HLNEAVSFLSLPELVNYHRAQSLS-----HGLRLAAPCRK 98
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 108 bits (272), Expect = 5e-27
Identities = 49/309 (15%), Positives = 85/309 (27%), Gaps = 62/309 (20%)
Query: 210 NSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
+ +++G ISR + + L A ADG FL+R G Y L+L I
Sbjct: 1 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIE 60
Query: 268 -HRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSND 326
NG Y + EL +Y + L L P +R S +
Sbjct: 61 RQLNGTYAIAGGKAHCGPAELCEFYSRDP-----DGLPCNLRKPCNRPSGLEPQPGVFDC 115
Query: 327 VDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADI 386
+ +R + +I+ + + Y
Sbjct: 116 LRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWY------------- 162
Query: 387 HSNDVDKYINLKIAFTNLSGAVASTVDFESGEK--TWLVRMSRAQAEALLSGRPDGTFLI 444
++L+ A + + +L+R
Sbjct: 163 --------------HSSLTREEAERKLYSGAQTDGKFLLRPR------------------ 190
Query: 445 RPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDD 504
G YALS++ H L+ + + G + +L LV + + D
Sbjct: 191 --KEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYL-----KLKADG 243
Query: 505 LKTTLAYPV 513
L L
Sbjct: 244 LIYCLKEAC 252
Score = 76.1 bits (187), Expect = 1e-15
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 479
+SRA+AE L +G DG FL+R G Y LS+V H + G
Sbjct: 12 SISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAG 71
Query: 480 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
+ L Y+ + D L L P P
Sbjct: 72 GKAHCGPAELCEFYSRDP-----DGLPCNLRKPCNRP 103
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 104 bits (261), Expect = 1e-26
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTL----RKGGTN 261
+ L WY G R + L DG+FL+R +S + + TL K N
Sbjct: 15 DQEAELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYN 74
Query: 262 KLIKIFHRNGRYGFSEP----FKFTSVVELINYYKHESL----SQYNSTLDTRLLYPVS 312
++ +Y + F SVVE++N ++H L SQ N+ TRL Y V
Sbjct: 75 IPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNTKDSTRLKYAVK 133
Score = 71.4 bits (175), Expect = 5e-15
Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 17/113 (15%)
Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT----GQYALSIVCSGAPKHCLVYETERGFGFA- 477
R AE L DG+FLIR S+ Y L + + V E +A
Sbjct: 29 ACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEATKQYAL 88
Query: 478 ----EPFNIYPSLGALVLHYAANSL----EEHNDDLKTTLAYPV---FAPASG 519
+ S+ +V + N L ++N T L Y V P+SG
Sbjct: 89 GKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNTKDSTRLKYAVKVSSGPSSG 141
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 110
Score = 101 bits (255), Expect = 3e-26
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLR------KGGTN 261
++ L D +W+ G+ISR L +G F+VR+ S++ G YT++L K GT
Sbjct: 5 SSGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRN-SSQVGMYTVSLFSKAVNDKKGTV 63
Query: 262 KLIKI-FHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
K + + + +E + F S+ +LI+Y++H S + TRL +PVS
Sbjct: 64 KHYHVHTNAENKLYLAENYCFDSIPKLIHYHQHNSAG-----MITRLRHPVS 110
Score = 78.1 bits (193), Expect = 8e-18
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCS------GAPKHCLVYETERGFG 475
+SR+Q+E LL +G F++R S+ G Y +S+ G KH V+
Sbjct: 17 NISRSQSEQLLRQKGKEGAFMVRNSSQVGMYTVSLFSKAVNDKKGTVKHYHVHTNAENKL 76
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ + S+ L+ ++ + ++ + T L +PV
Sbjct: 77 YLAENYCFDSIPKLIHYH-----QHNSAGMITRLRHPV 109
Score = 42.6 bits (101), Expect = 2e-05
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 376
+E + F S+ +LI+Y++H S + TRL +PVS
Sbjct: 77 YLAENYCFDSIPKLIHYHQHNSAG-----MITRLRHPVS 110
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide
binding protein; HET: PTR; 1.80A {Mus musculus} SCOP:
d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Length = 100
Score = 101 bits (254), Expect = 3e-26
Identities = 20/93 (21%), Positives = 43/93 (46%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRN 270
+ EW+ +SR + L G F++R + + G++++++R + K+
Sbjct: 5 DIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDT 64
Query: 271 GRYGFSEPFKFTSVVELINYYKHESLSQYNSTL 303
F KF S+ +L++YY+ S+S+
Sbjct: 65 KGNYFLWTEKFPSLNKLVDYYRTTSISKQKQVF 97
Score = 87.6 bits (218), Expect = 2e-21
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+SR QAE LL G+ G F+IR S + G +++S+ +H V +G F
Sbjct: 15 GLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWT-E 73
Query: 482 IYPSLGALVLHYAANSLEEHNDDL 505
+PSL LV +Y S+ +
Sbjct: 74 KFPSLNKLVDYYRTTSISKQKQVF 97
Score = 34.5 bits (80), Expect = 0.011
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 337 RTFSEPFKFTSVVELINYYKHESLSQYNSTL 367
F KF S+ +L++YY+ S+S+
Sbjct: 67 NYFLWTEKFPSLNKLVDYYRTTSISKQKQVF 97
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 100 bits (250), Expect = 2e-25
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKL 263
L + +WY G I R + + L G FLVR++ K GEY L++ G +
Sbjct: 6 HHHSHMKPLAEQDWYHGAIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVYSDGQRRH 63
Query: 264 IKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
I + + Y F F+++ +LI+++ LL P+ +
Sbjct: 64 FIIQYVDNMYRFEGT-GFSNIPQLIDHHYTTKQV-ITKKSGVVLLNPIPK 111
Score = 73.1 bits (180), Expect = 5e-16
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+ R +A+ LL + G FL+R S G+Y LS+ G +H ++ + + F
Sbjct: 23 AIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRFEGTG- 79
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ ++ L+ H+ L P+
Sbjct: 80 -FSNIPQLIDHHYTTKQVITKKS-GVVLLNPI 109
Score = 33.5 bits (77), Expect = 0.035
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
F+++ +LI+++ LL P+ +
Sbjct: 79 GFSNIPQLIDHHYTTKQV-ITKKSGVVLLNPIPK 111
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction,
peptide complex, complex (proto-oncogene/early protein);
HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Length = 106
Score = 99.6 bits (249), Expect = 2e-25
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 211 SLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
S++ EWY+G + R D +L GTFL+R++ T G Y+L++R K + H
Sbjct: 1 SIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKH 60
Query: 269 ------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
NG Y + +F ++ +L+ +Y + L +RL+ P +
Sbjct: 61 YKIRKLDNGGYYITTRAQFETLQQLVQHYSERAAG-----LSSRLVVPSHK 106
Score = 70.4 bits (173), Expect = 4e-15
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCS-----GAPKHCLVYETERGF 474
++ R AE L G P GTFLIR S T G Y+LSI KH + + + G
Sbjct: 11 KLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGG 70
Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ + +L LV HY+ + L + L P
Sbjct: 71 YYITTRAQFETLQQLVQHYSERA-----AGLSSRLVVPS 104
Score = 41.1 bits (97), Expect = 7e-05
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+ +F ++ +L+ +Y + L +RL+ P +
Sbjct: 72 YITTRAQFETLQQLVQHYSERAAG-----LSSRLVVPSHK 106
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase;
NMR {Homo sapiens}
Length = 125
Score = 99.7 bits (249), Expect = 3e-25
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 14/112 (12%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLR---KGGTNKLIK 265
+S+ EWY ++R L +G F+VRD S+K G+YT+++ G +I+
Sbjct: 6 DSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRD-SSKAGKYTVSVFAKSTGDPQGVIR 64
Query: 266 IFH----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+ +Y +E F+++ ELINY++H S L +RL YPVS+
Sbjct: 65 HYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNSAG-----LISRLKYPVSQ 111
Score = 81.2 bits (201), Expect = 9e-19
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCS------GAPKHCLVYETERGFG 475
M+R+QAE LL +G F++R S+ G+Y +S+ G +H +V T +
Sbjct: 17 HMTRSQAEQLLKQEGKEGGFIVRDSSKAGKYTVSVFAKSTGDPQGVIRHYVVCSTPQSQY 76
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ +++ ++ L+ ++ + ++ L + L YPV
Sbjct: 77 YLAEKHLFSTIPELINYH-----QHNSAGLISRLKYPV 109
Score = 42.7 bits (101), Expect = 2e-05
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+E F+++ ELINY++H S L +RL YPVS+
Sbjct: 77 YLAEKHLFSTIPELINYHQHNSAG-----LISRLKYPVSQ 111
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 108 bits (272), Expect = 3e-25
Identities = 53/294 (18%), Positives = 89/294 (30%), Gaps = 59/294 (20%)
Query: 210 NSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
+ +++G ISR + + L A ADG FL+R G Y L+L I
Sbjct: 3 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIE 62
Query: 268 HR-NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSND 326
+ NG Y + EL +Y + L L P +R S +
Sbjct: 63 RQLNGTYAIAGGKAHCGPAELCEFYSRDPDG-----LPCNLRKPCNRPSGLEPQPGVFDC 117
Query: 327 VDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADI 386
+ +R + +I+ + + Y
Sbjct: 118 LRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWY------------- 164
Query: 387 HSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAEALL--SGRPDGTFLI 444
++L+ R +AE L + DG FL+
Sbjct: 165 --------------HSSLT---------------------REEAERKLYSGAQTDGKFLL 189
Query: 445 RPSTT-GQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANS 497
RP G YALS++ H L+ + + G + +L LV + +
Sbjct: 190 RPRKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKA 243
Score = 67.7 bits (165), Expect = 4e-12
Identities = 38/214 (17%), Positives = 62/214 (28%), Gaps = 32/214 (14%)
Query: 111 NDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYA----RGVREPPTILIQSFTF 166
L + + L +L + C GV + +
Sbjct: 72 AGGKAHCGPAELCE----FYSRDPDGLPCNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYV 127
Query: 167 VLPTFSSPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDD 226
AL +S P + T + WY ++R++
Sbjct: 128 RQTWKLEGEALEQAIISQAPQVEKL---------------IATTAHERMPWYHSSLTREE 172
Query: 227 VNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGRYGFSEPFKFTS 283
KL DG FL+R + G Y L+L G T I G+Y E KF +
Sbjct: 173 AERKLYSGAQTDGKFLLRP-RKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDT 231
Query: 284 VVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
+ +L+ Y K ++ L S+
Sbjct: 232 LWQLVEYLKLKADGLI-----YCLKEACPNSSAS 260
Score = 65.7 bits (160), Expect = 2e-11
Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 479
+SRA+AE L +G DG FL+R G Y LS+V H + G
Sbjct: 14 SISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAG 73
Query: 480 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ L Y D L L P
Sbjct: 74 GKAHCGPAELCEFY-----SRDPDGLPCNLRKPC 102
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 98.9 bits (247), Expect = 6e-25
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 210 NSLRDAEWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTLRKG------GTNK 262
+L EWY +I+R+ L ++ +G F+VRD S G YT+++ G K
Sbjct: 11 TNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRD-SRHLGSYTISVFMGARRSTEAAIK 69
Query: 263 LIKI-FHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+I + +G++ +E F S+ ELI Y++H + L TRL YPV
Sbjct: 70 HYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNAAG-----LMTRLRYPVGL 116
Score = 81.6 bits (202), Expect = 9e-19
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIV------CSGAPKHCLVYETERGFG 475
++R QAE LL +G F++R S G Y +S+ A KH + + + G
Sbjct: 22 NITRNQAEHLLRQESKEGAFIVRDSRHLGSYTISVFMGARRSTEAAIKHYQIKKNDSGQW 81
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVF-----APASG 519
+ + + S+ L+ ++ + + L T L YPV P+SG
Sbjct: 82 YVAERHAFQSIPELIWYH-----QHNAAGLMTRLRYPVGLMGSSGPSSG 125
Score = 42.3 bits (100), Expect = 4e-05
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+E F S+ ELI Y++H + L TRL YPV
Sbjct: 82 YVAERHAFQSIPELIWYHQHNAAG-----LMTRLRYPVGL 116
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 96.6 bits (241), Expect = 3e-24
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKL 263
SSG NSL WY G +SR L+ +G+FLVR++ + G+ +++LR G
Sbjct: 5 SSGTPVNSLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYH 64
Query: 264 IKIF-HRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+I +G+ + +F+++ EL++++ + L T L YP +
Sbjct: 65 YRINTTADGKVYVTAESRFSTLAELVHHHSTVADG-----LVTTLHYPAPK 110
Score = 90.0 bits (224), Expect = 8e-22
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+SR+ AE LLS +G+FL+R S + GQ ++S+ G H + T G + +
Sbjct: 22 PVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVTAES 81
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPVF-----APASG 519
+ +L LV H+ D L TTL YP P+SG
Sbjct: 82 RFSTLAELVHHH-----STVADGLVTTLHYPAPKCNKSGPSSG 119
Score = 38.4 bits (90), Expect = 0.001
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+F+++ EL++++ + L T L YP +
Sbjct: 82 RFSTLAELVHHHSTVADG-----LVTTLHYPAPK 110
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 94.7 bits (236), Expect = 1e-23
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKL 263
SSG + EW+ G ISR+D + L G+FL+R + + G YTL+ + +
Sbjct: 5 SSGGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCH 63
Query: 264 IKI-FHRNGRY-GFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+ +G + E TS+ L+ +++ + + L P +
Sbjct: 64 FMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPI----EPRRELLTQPCRQ 111
Score = 80.5 bits (199), Expect = 2e-18
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTTGQ-YALSIVCSGAPKHCLVYETERGFGF-AEPFN 481
+SR AE LL +P G+FLIR S + Y LS + H +V + G
Sbjct: 22 AISREDAENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCHFMVKLLDDGTFMIPGEKV 81
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 519
+ SL ALV + +E + L P+SG
Sbjct: 82 AHTSLDALVTFHQQKPIEPRRELLTQPCRQKDSGPSSG 119
Score = 36.9 bits (86), Expect = 0.003
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 334 GVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
G E TS+ L+ +++ + + L P +
Sbjct: 72 GTFMIPGEKVAHTSLDALVTFHQQKPI----EPRRELLTQPCRQ 111
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 94.3 bits (235), Expect = 2e-23
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 212 LRDAEWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRN 270
++ W++G I R + L DG FL+R++ + G+++L+++ G + K+
Sbjct: 3 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG 62
Query: 271 GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
F KF S+ EL++Y++ S+S+ N + R + V +
Sbjct: 63 AGKYFLWVVKFNSLNELVDYHRSTSVSR-NQQIFLRDIEQVPQ 104
Score = 81.2 bits (201), Expect = 8e-19
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 424 RMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F
Sbjct: 12 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV- 70
Query: 481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ SL LV ++ + S+ N + V
Sbjct: 71 VKFNSLNELVDYHRSTSVSR-NQQIFLRDIEQV 102
Score = 36.5 bits (85), Expect = 0.003
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
F KF S+ EL++Y++ S+S+ N + R + V +
Sbjct: 67 FLWVVKFNSLNELVDYHRSTSVSR-NQQIFLRDIEQVPQ 104
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 121
Score = 94.3 bits (235), Expect = 2e-23
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 201 AKMSSGPETNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKG 258
+ SSG E SL+ W++G I R D +L ++ G FL+R++ ++ G+++L++
Sbjct: 2 SSGSSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDE 61
Query: 259 GTNKLIKIFHR-NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
G K +I G + + F+++ E +NYY S L +L P +
Sbjct: 62 GVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTSDG-----LCVKLEKPCLK 112
Score = 85.4 bits (212), Expect = 3e-20
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 479
+ RA AE L S G FLIR S + G ++LS++ G KH + + G F
Sbjct: 22 AIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLTR 81
Query: 480 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
++ +L V +Y S D L L P
Sbjct: 82 RKVFSTLNEFVNYYTTTS-----DGLCVKLEKPCLKI 113
Score = 36.1 bits (84), Expect = 0.005
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
F+++ E +NYY S L +L P +
Sbjct: 84 VFSTLNEFVNYYTTTSDG-----LCVKLEKPCLK 112
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 93.5 bits (233), Expect = 4e-23
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNK 262
SSG E + W+ G IS+ + + L +FLVR + G+Y+L R +
Sbjct: 5 SSGREEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQ 64
Query: 263 LIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
KI + S+ ++I++Y+ E + L PV
Sbjct: 65 RFKICPTPNNQFMMGGRYYNSIGDIIDHYRKEQIV-----EGYYLKEPVPM 110
Score = 74.6 bits (184), Expect = 2e-16
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 14/104 (13%)
Query: 424 RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
++S+ +A LL +FL+RPS G Y+L + + + T F
Sbjct: 22 KISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNN-QFMMGG 80
Query: 481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV-----FAPASG 519
Y S+G ++ HY + L PV P+SG
Sbjct: 81 RYYNSIGDIIDHY-----RKEQIVEGYYLKEPVPMQDQSGPSSG 119
Score = 35.7 bits (83), Expect = 0.007
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+ S+ ++I++Y+ E + L PV
Sbjct: 82 YYNSIGDIIDHYRKEQIV-----EGYYLKEPVPM 110
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 92.7 bits (231), Expect = 7e-23
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR 269
+S + WY G +SR + +L G FLVRD+ST G+Y L++ + I
Sbjct: 14 DSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSL 73
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
R +F + L+ +YK L T L+ P R
Sbjct: 74 PNRRFKIGDQEFDHLPALLEFYKIHYLDT------TTLIEPAPR 111
Score = 80.0 bits (198), Expect = 2e-18
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+SR +A+ L G+ G FL+R S+T G Y LS+ + H ++
Sbjct: 25 PVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGD-Q 83
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ L AL+ Y + L+ TTL P
Sbjct: 84 EFDHLPALLEFYKIHYLDT------TTLIEPA 109
Score = 34.9 bits (81), Expect = 0.011
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+F + L+ +YK L T L+ P R
Sbjct: 84 EFDHLPALLEFYKIHYLDT------TTLIEPAPR 111
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation,
binding specificity; HET: PTR MPD; 1.45A {Homo sapiens}
PDB: 1z3k_A 2ci9_A* 2ci8_A*
Length = 102
Score = 92.3 bits (230), Expect = 7e-23
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 216 EWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYG 274
EWY+G+++R L + +G FL+RD+ + +++++L+ G NK K+ + Y
Sbjct: 6 EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYC 65
Query: 275 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
+ +F ++ EL+ +YK + L+ +
Sbjct: 66 IGQR-RFHTMDELVEHYKKAPIFTSEHGEKLYLVRAL 101
Score = 76.5 bits (189), Expect = 3e-17
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 424 RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
++R QAE L+ R +G FLIR S + +++S+ SG KH V + + +
Sbjct: 11 NVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQ-- 68
Query: 481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ ++ LV HY + K L +
Sbjct: 69 RRFHTMDELVEHYKKAPIFTSEHGEKLYLVRAL 101
Score = 35.3 bits (82), Expect = 0.007
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPV 375
+F ++ EL+ +YK + L+ +
Sbjct: 70 RFHTMDELVEHYKKAPIFTSEHGEKLYLVRAL 101
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS
proline, domain swapped dimer, SH transferase; HET: CIT;
2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A
1lum_A 1lun_A 2k79_B 2k7a_B
Length = 118
Score = 92.4 bits (230), Expect = 9e-23
Identities = 40/114 (35%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGG---TNKLIK 265
N+L EWY ISRD L DT +G F+VRD S G YT+++ N IK
Sbjct: 4 NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRD-SRTPGTYTVSVFTKAIISENPCIK 62
Query: 266 IFH------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+H RY +E + F S+ LI Y+++ L TRL YPV
Sbjct: 63 HYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGG-----LVTRLRYPVCG 111
Score = 67.0 bits (164), Expect = 9e-14
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCSGAP------KHCLVYETERGFG 475
+SR +AE LL +G F++R S T G Y +S+ KH + ET
Sbjct: 15 SISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPK 74
Query: 476 --FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ ++ S+ L+ ++ + + L T L YPV
Sbjct: 75 RYYVAEKYVFDSIPLLIQYH-----QYNGGGLVTRLRYPV 109
Score = 39.3 bits (92), Expect = 4e-04
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+E + F S+ LI Y+++ L TRL YPV
Sbjct: 77 YVAEKYVFDSIPLLIQYHQYNGGG-----LVTRLRYPVCG 111
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus musculus}
PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 91.2 bits (227), Expect = 2e-22
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 211 SLRDAEWYWGDISRDDVNDKL---ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
L W+ G +SR + + G FLVR + T+ GE LT G K +++
Sbjct: 5 PLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLS 64
Query: 268 HRNGRYGFSEPFKFTSVVELINYYKHESLS-QYNSTLDTRLLYPV 311
+ F S+ +++ +++ + + + D L+ V
Sbjct: 65 LNAAGQCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYV 109
Score = 75.4 bits (186), Expect = 8e-17
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 424 RMSRAQAEALL---SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAE 478
+SR +A L+ G FL+R S T G+ L+ G KH + G +
Sbjct: 15 MLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQ 74
Query: 479 PFNIYPSLGALVLHYAANSL-EEHNDDLKTTLAYPV 513
+ S+ ++ H+ + + E L V
Sbjct: 75 -HLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYV 109
Score = 32.7 bits (75), Expect = 0.074
Identities = 5/33 (15%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 344 KFTSVVELINYYKHESLS-QYNSTLDTRLLYPV 375
F S+ +++ +++ + + + D L+ V
Sbjct: 77 HFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYV 109
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 91.8 bits (228), Expect = 2e-22
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKL-------ADTADGTFLVRDTSTKNGEYTLTLRKGG 259
P T +W+ + +KL DGTFLVR++ T +YTL+ + G
Sbjct: 14 PPTELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSG 73
Query: 260 TNKLIKIFHRN----GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+ +I +Y ++ F S+ LI +Y+ L + + RL PV
Sbjct: 74 RVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHL--RCAEFELRLTDPVPN 129
Score = 66.8 bits (163), Expect = 1e-13
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 426 SRAQAEALL------SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFG-- 475
SR AE LL +G DGTFL+R S T Y LS SG +HC + T
Sbjct: 31 SRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMK 90
Query: 476 -FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ + S+ AL+ HY L + + L PV
Sbjct: 91 YYLTDNLTFNSIYALIQHYREAHLR--CAEFELRLTDPV 127
Score = 37.5 bits (87), Expect = 0.002
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
++ F S+ LI +Y+ L + + RL PV
Sbjct: 92 YLTDNLTFNSIYALIQHYREAHL--RCAEFELRLTDPVPN 129
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET:
PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A*
1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L*
1cwe_A*
Length = 105
Score = 90.0 bits (224), Expect = 4e-22
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 212 LRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH- 268
L W++ ++SR D +L G+FL+R++ + G ++L++R N+ + H
Sbjct: 1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 60
Query: 269 -----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
NG + S F + EL+ +Y + S L TRL P
Sbjct: 61 KIRNLDNGGFYISPRITFPGLHELVRHYTNASDG-----LCTRLSRPCQ 104
Score = 73.9 bits (182), Expect = 2e-16
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 474
+SR AE L G G+FLIR S + G ++LS+ KH + + G
Sbjct: 10 NLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGG 69
Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ P +P L LV HY S D L T L+ P
Sbjct: 70 FYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 103
Score = 36.1 bits (84), Expect = 0.004
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 376
S F + EL+ +Y + S L TRL P
Sbjct: 71 YISPRITFPGLHELVRHYTNASDG-----LCTRLSRPCQ 104
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 91.9 bits (228), Expect = 2e-21
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 192 HSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGE 250
R + ++ P+TN+ EWY ++R L DG FLVR +
Sbjct: 99 PLRCNEFEMRLSEPVPQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRK-RNEPNS 157
Query: 251 YTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
Y ++ R G K ++ + G+ +F S+V+LI+YY+ L +L YP
Sbjct: 158 YAISFRAEGKIKHCRV-QQEGQTVMLGNSEFDSLVDLISYYEKHPLY-----RKMKLRYP 211
Query: 311 VSR 313
++
Sbjct: 212 INE 214
Score = 80.0 bits (197), Expect = 3e-17
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 424 RMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
++RAQAE +L P DG FL+R YA+S G KHC V + + +
Sbjct: 128 SLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQTVML--GNS 185
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ SL L+ +Y E+H K L YP+
Sbjct: 186 EFDSLVDLISYY-----EKHPLYRKMKLRYPI 212
Score = 72.6 bits (178), Expect = 9e-15
Identities = 42/217 (19%), Positives = 79/217 (36%), Gaps = 62/217 (28%)
Query: 216 EWYWGDIS-----RDDVNDKLADTA------DGTFLVRDTSTKNGEYTLTLRKGGTNKLI 264
+W+ G + R L + DG+FLVR++ T G+YTL+ + G +
Sbjct: 5 KWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHC 64
Query: 265 KIFHRN----GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDA 320
+I R ++ ++ F S+ +LI +Y+ L + RL PV + ++
Sbjct: 65 RIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNE--FEMRLSEPVPQTNAHESK 122
Query: 321 DIHSNDVDKNPAPGVLRTFSEP--F----------------------------------- 343
+ + + + A +L F
Sbjct: 123 EWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQTVML 182
Query: 344 ---KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+F S+V+LI+YY+ L +L YP++
Sbjct: 183 GNSEFDSLVDLISYYEKHPLY-----RKMKLRYPINE 214
Score = 63.4 bits (154), Expect = 1e-11
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 426 SRAQAEALL------SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETE---RGF 474
R AE LL +G PDG+FL+R S T G Y LS +G +HC ++ +
Sbjct: 17 GRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPK 76
Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
F ++ SL L+ HY L + +++ + P
Sbjct: 77 FFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQTNA 118
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 88.0 bits (219), Expect = 3e-21
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF-HR 269
SL WY G +SR+ L+ +G+FLVR++ + G+ +++LR G +I
Sbjct: 1 SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTAS 60
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+G+ S +F ++ EL++++ + L T L YP +
Sbjct: 61 DGKLYVSSESRFNTLAELVHHHSTVADG-----LITTLHYPAPK 99
Score = 85.0 bits (211), Expect = 3e-20
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+SR AE LLS +G+FL+R S + GQ ++S+ G H + G + +
Sbjct: 11 PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSES 70
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ +L LV H++ + D L TTL YP
Sbjct: 71 RFNTLAELVHHHSTVA-----DGLITTLHYPA 97
Score = 34.5 bits (80), Expect = 0.015
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+F ++ EL++++ + L T L YP +
Sbjct: 71 RFNTLAELVHHHSTVADG-----LITTLHYPAPK 99
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
feline sarcoma oncogene, structural genomics; NMR {Homo
sapiens} PDB: 2dcr_A
Length = 114
Score = 87.1 bits (216), Expect = 6e-21
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKL 263
SSG L + WY G I R +V + L G FLVR++ K EY L++ G +
Sbjct: 5 SSGEVQKPLHEQLWYHGAIPRAEVAELL--VHSGDFLVRESQGK-QEYVLSVLWDGLPRH 61
Query: 264 IKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
I + Y E F S+ LI++ L V
Sbjct: 62 FIIQSLDNLYRL-EGEGFPSIPLLIDHLLSTQQP-LTKKSGVVLHRAVPS 109
Score = 65.5 bits (160), Expect = 2e-13
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
+ RA+ LL G FL+R S +Y LS++ G P+H ++ + +
Sbjct: 22 AIPRAEVAELL--VHSGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDNLYRLEG--EG 77
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYPV-FAPASG 519
+PS+ L+ H + L V P+SG
Sbjct: 78 FPSIPLLIDHLLSTQQPLTKKS-GVVLHRAVPSGPSSG 114
Score = 30.4 bits (69), Expect = 0.45
Identities = 6/34 (17%), Positives = 9/34 (26%), Gaps = 1/34 (2%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
F S+ LI++ L V
Sbjct: 77 GFPSIPLLIDHLLSTQQP-LTKKSGVVLHRAVPS 109
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex; HET:
PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A*
1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E*
1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 84.9 bits (211), Expect = 2e-20
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 216 EWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYG 274
W++G I R + L DG FL+R++ + G+++L+++ G + K+
Sbjct: 4 AWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKY 63
Query: 275 FSEPFKFTSVVELINYYKHESLS 297
F KF S+ EL++Y++ S+S
Sbjct: 64 FLWVVKFNSLNELVDYHRSTSVS 86
Score = 75.3 bits (186), Expect = 5e-17
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 424 RMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F
Sbjct: 9 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV- 67
Query: 481 NIYPSLGALVLHYAANSLEE 500
+ SL LV ++ + S+
Sbjct: 68 VKFNSLNELVDYHRSTSVSR 87
Score = 31.8 bits (73), Expect = 0.11
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 339 FSEPFKFTSVVELINYYKHESLS 361
F KF S+ EL++Y++ S+S
Sbjct: 64 FLWVVKFNSLNELVDYHRSTSVS 86
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 92.0 bits (229), Expect = 4e-20
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 200 VAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGG 259
V K L W+ G I+R+ L G FLVR+++ G+YTL + G
Sbjct: 65 VQKREGVKAGTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEG 124
Query: 260 TNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+ +I + + E F ++++L+ +Y ++ L TRL+ P
Sbjct: 125 KVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTTDADG-----LCTRLIKPKVM 173
Score = 65.1 bits (159), Expect = 2e-11
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+++R QAE LL G FL+R ST G Y L + C G +H + E
Sbjct: 86 KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVY 145
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ +L LV HY ++ D L T L P
Sbjct: 146 -FENLMQLVEHYTTDA-----DGLCTRLIKPK 171
Score = 30.0 bits (68), Expect = 2.2
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+ E F ++++L+ +Y ++ L TRL+ P
Sbjct: 139 SIDEEVYFENLMQLVEHYTTDADG-----LCTRLIKPKVM 173
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein
binding/transferase complex; HET: PTR; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 109
Score = 84.5 bits (209), Expect = 4e-20
Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 23/114 (20%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
WYWG +SR + L G FLVRD+ST G+Y L++ + I R
Sbjct: 2 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 61
Query: 277 EPF-----------------KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+F S+ L+ +YK L T L+ PVSR
Sbjct: 62 PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT------TTLIEPVSR 109
Score = 78.3 bits (193), Expect = 6e-18
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 24/108 (22%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
R+SR +A ALL G+ G FL+R S+T G Y LS+ + H ++ +
Sbjct: 6 RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPA 65
Query: 482 I----------------YPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ SL AL+ Y + L+ TTL PV
Sbjct: 66 QPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT------TTLIEPV 107
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 90.6 bits (225), Expect = 1e-19
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 208 ETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI- 266
NSL WY G +SR+ L+ +G+FLVR++ + G+ +++LR G +I
Sbjct: 98 PVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRIN 157
Query: 267 FHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+G+ S +F ++ EL++++ + L T L YP +
Sbjct: 158 TASDGKLYVSSESRFNTLAELVHHHSTVADG-----LITTLHYPAPK 199
Score = 74.0 bits (182), Expect = 3e-14
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+SR AE LLS +G+FL+R S + GQ ++S+ G H + G + +
Sbjct: 111 PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSES 170
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ +L LV H++ + D L TTL YP
Sbjct: 171 RFNTLAELVHHHSTVA-----DGLITTLHYPA 197
Score = 33.2 bits (76), Expect = 0.22
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
S +F ++ EL++++ + L T L YP +
Sbjct: 165 YVSSESRFNTLAELVHHHSTVADG-----LITTLHYPAPK 199
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase,
phosphotransferase, phosphorylation; NMR {Mus musculus}
SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 82.8 bits (205), Expect = 2e-19
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADTA--DGTFLVRDTSTKNGEYTLTLR-KGGTNKL 263
+L +W++ ISR D +L G+FL+R++ + G ++L+++ ++
Sbjct: 4 APVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEV 63
Query: 264 IKIFH----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+K + NG Y S F ++ L+ +Y + L +L P
Sbjct: 64 VKHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKGDG-----LCQKLTLPCVN 112
Score = 64.3 bits (157), Expect = 6e-13
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP----KHCLVYETERGFG 475
+SR AE L G+FLIR S + G ++LS+ KH + + G
Sbjct: 18 TISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGY 77
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ P +P+L ALV HY+ D L L P
Sbjct: 78 YISPRITFPTLQALVQHYSKKG-----DGLCQKLTLPC 110
Score = 35.8 bits (83), Expect = 0.006
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 5/40 (12%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
S F ++ L+ +Y + L +L P
Sbjct: 78 YISPRITFPTLQALVQHYSKKGDG-----LCQKLTLPCVN 112
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 81.6 bits (202), Expect = 5e-19
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 208 ETNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNK--L 263
R W+ G ISR++ + DG FLVR++ + L+L K L
Sbjct: 7 SAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYL 66
Query: 264 IKIFHRNGRYGFS---EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
I GR FS +FT +++L+ +++ L L + +R
Sbjct: 67 ILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGI-----LPCLLRHCCTR 114
Score = 77.7 bits (192), Expect = 1e-17
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 424 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG----FG 475
R+SR +++ L+ G DG FL+R S + LS+ KH L+ +E F
Sbjct: 20 RISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFS 79
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA 517
+ + L LV + + + L L + A
Sbjct: 80 MDDGQTRFTDLLQLVEFH-----QLNRGILPCLLRHCCTRVA 116
Score = 33.8 bits (78), Expect = 0.032
Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
+FT +++L+ +++ L L + +R
Sbjct: 86 RFTDLLQLVEFHQLNRGI-----LPCLLRHCCTR 114
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 81.6 bits (202), Expect = 7e-19
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 216 EWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF-HRNGR 272
W+ ISRD+ + DG FLVRD+ + + L++ G K +I +
Sbjct: 27 PWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDG 86
Query: 273 YGF----SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
F +FT +++L+ +Y+ L +L + +R
Sbjct: 87 EMFHTLDDGHTRFTDLIQLVEFYQLNKGV-----LPCKLKHYCAR 126
Score = 73.5 bits (181), Expect = 4e-16
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 424 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--- 476
++SR +A+ L+ G DG FL+R S + + LS+ KH + E
Sbjct: 32 KISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMFHT 91
Query: 477 -AEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ + L LV Y + + L L +
Sbjct: 92 LDDGHTRFTDLIQLVEFY-----QLNKGVLPCKLKHYC 124
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 80.1 bits (198), Expect = 1e-18
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 12/109 (11%)
Query: 212 LRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR- 269
+ Y G ISR+ L T DG++L+RD+ + G Y L + G ++
Sbjct: 1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60
Query: 270 NGRYGFSEPF-----KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
G + F + LI+ ++ + L YPV +
Sbjct: 61 TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQG-----IVIPLQYPVEK 104
Score = 74.7 bits (184), Expect = 1e-16
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 475
++SR E LL + DG++L+R S + G Y L ++ G V +TE G
Sbjct: 10 KISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETA 69
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ + L+ + ++ + + L YPV
Sbjct: 70 PGVHKRYFRKIKNLISAF-----QKPDQGIVIPLQYPV 102
Score = 35.8 bits (83), Expect = 0.005
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
F + LI+ ++ + L YPV +
Sbjct: 76 YFRKIKNLISAFQKPDQG-----IVIPLQYPVEK 104
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal
transduction lymphocyte, signaling protein; HET: PTR;
2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 79.6 bits (197), Expect = 2e-18
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 214 DAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF-HRNG 271
D +Y G +++ + L DG FL+RD+ + G L + +IF ++G
Sbjct: 2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHG 61
Query: 272 RY-----GFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
Y + F ++ EL++ Y L L P+ R
Sbjct: 62 YYRIETDAHTPRTIFPNLQELVSKYGKPG-----QGLVVHLSNPIMR 103
Score = 78.9 bits (195), Expect = 3e-18
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 475
+++ + EALL G DG FLIR S + G L + ++ + G+
Sbjct: 9 CLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETD 68
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
P I+P+L LV Y + L L+ P+
Sbjct: 69 AHTPRTIFPNLQELVSKY-----GKPGQGLVVHLSNPI 101
Score = 33.8 bits (78), Expect = 0.024
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
F ++ EL++ Y L L P+ R
Sbjct: 75 IFPNLQELVSKYGKPG-----QGLVVHLSNPIMR 103
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 79.6 bits (197), Expect = 2e-18
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 216 EWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGR 272
W+ G ISR++ + + DG FL+RD+ + + LTL K +I +
Sbjct: 6 HWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDG 65
Query: 273 YGF----SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
F KF+ +++L+++Y+ L +L + R
Sbjct: 66 QTFFSLDDGNTKFSDLIQLVDFYQLNKGV-----LPCKLKHHCIR 105
Score = 76.5 bits (189), Expect = 3e-17
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 424 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG----FG 475
R+SR ++ ++ G DG FL+R S + + L++ K+ + E F
Sbjct: 11 RISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFS 70
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ + L LV Y + + L L +
Sbjct: 71 LDDGNTKFSDLIQLVDFY-----QLNKGVLPCKLKHHC 103
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 80.5 bits (199), Expect = 2e-18
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 12/126 (9%)
Query: 212 LRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR- 269
+ Y G ISR+ L T DG++L+RD+ + G Y L + G ++
Sbjct: 1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60
Query: 270 NGRYGFSEPF-----KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHS 324
G + F + LI+ ++ + L YPV + SS +
Sbjct: 61 TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQG-----IVIPLQYPVEKKSSARSTQGTT 115
Query: 325 NDVDKN 330
+
Sbjct: 116 GIREDP 121
Score = 76.3 bits (188), Expect = 5e-17
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 475
++SR E LL + DG++L+R S + G Y L ++ G V +TE G
Sbjct: 10 KISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETA 69
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMTV 522
+ + L+ + ++ + + L YPV +S +
Sbjct: 70 PGVHKRYFRKIKNLISAF-----QKPDQGIVIPLQYPVEKKSSARST 111
Score = 36.2 bits (84), Expect = 0.006
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDK 393
F + LI+ ++ + L YPV + SS + +
Sbjct: 76 YFRKIKNLISAFQKPDQG-----IVIPLQYPVEKKSSARSTQGTTGIRED 120
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 78.8 bits (194), Expect = 8e-18
Identities = 30/137 (21%), Positives = 42/137 (30%), Gaps = 29/137 (21%)
Query: 192 HSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEY 251
H S + S WY +SRD L D G FL+RD+ + G Y
Sbjct: 3 HHHHHSSGLVPR------GSDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAY 56
Query: 252 TLTLR----------KGGTNKLIKIFH------RNGRY--GFSEPFKFTSVVELINYYKH 293
L L+ G + H G G F S+ L++ +
Sbjct: 57 GLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSI 116
Query: 294 ESLSQYNSTLDTRLLYP 310
+S L L P
Sbjct: 117 SPIS-----LPCCLRIP 128
Score = 71.1 bits (174), Expect = 5e-15
Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 26/109 (23%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAP---------------KHCL 466
+SR QA ALL + G FLIR S + G Y L++ + P +H L
Sbjct: 26 HLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFL 85
Query: 467 VYETERGF---GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
+ +G G + SL ALV ++ + L L P
Sbjct: 86 IETGPKGVKIKGCPSEP-YFGSLSALVSQHSISP-----ISLPCCLRIP 128
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 78.5 bits (194), Expect = 8e-18
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI-FHRNGRY- 273
W G+I+R + L+ T DG+FLVR + + + Y L + +I + + ++
Sbjct: 12 WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFT 71
Query: 274 ----GFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
FT + +LI +YK E++ L T L YPV
Sbjct: 72 VQASEGVSMRFFTKLDQLIEFYKKENMG-----LVTHLQYPVPL 110
Score = 76.6 bits (189), Expect = 4e-17
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 424 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 475
++R++AE LLS DG+FL+R S + YAL ++ + E
Sbjct: 16 NITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQAS 75
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ L L+ Y ++ N L T L YPV
Sbjct: 76 EGVSMRFFTKLDQLIEFY-----KKENMGLVTHLQYPV 108
Score = 35.0 bits (81), Expect = 0.014
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
FT + +LI +YK E++ L T L YPV
Sbjct: 82 FFTKLDQLIEFYKKENMG-----LVTHLQYPVPL 110
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 81.1 bits (201), Expect = 7e-17
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 204 SSGPETN-SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNK 262
S PE L + WY G I R +V + L G FLVR++ K EY L++ G +
Sbjct: 1 SMIPEVQKPLHEQLWYHGAIPRAEVAELL--VHSGDFLVRESQGK-QEYVLSVLWDGLPR 57
Query: 263 LIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
I E F S+ LI++ L + + R
Sbjct: 58 HFII-QSLDNLYRLEGEGFPSIPLLIDHLLSTQQP-----LTKKSGVVLHR 102
Score = 62.3 bits (152), Expect = 1e-10
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
+ RA+ LL G FL+R S +Y LS++ G P+H ++ + +
Sbjct: 19 AIPRAEVAELL--VHSGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDNLYRLEGEG-- 74
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
+PS+ L+ H + L +
Sbjct: 75 FPSIPLLIDHLLSTQ-----QPLTKKSGVVLHRA 103
Score = 28.8 bits (65), Expect = 5.3
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 5/40 (12%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
E F S+ LI++ L + + R
Sbjct: 68 YRLEGEGFPSIPLLIDHLLSTQQP-----LTKKSGVVLHR 102
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH
domain, signaling protein; 2.40A {Gallus gallus} SCOP:
a.116.1.1
Length = 231
Score = 77.0 bits (190), Expect = 4e-16
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 49 PGNASQVAELFHA-----YSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKF 103
G S+V +L + E ++ ++ E + LKTYL+ L PL+ Y + F
Sbjct: 62 VGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSF 121
Query: 104 VSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
+ N S + +LV P + L LM HLA++
Sbjct: 122 IKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVAD 164
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics
consortium, GTPase-activating protein, SGC, alternative
splicing, anti-oncogene; 2.80A {Homo sapiens}
Length = 246
Score = 77.0 bits (190), Expect = 4e-16
Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
Query: 49 PGNASQVAELFHAY-SGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLL 107
GN S++ L + +A +K++ L +PL+PY V
Sbjct: 93 SGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAH 152
Query: 108 SGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
++ L +++ FP + +Y+++HL ++
Sbjct: 153 KINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSH 191
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.80A {Homo sapiens}
Length = 202
Score = 75.7 bits (187), Expect = 5e-16
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 49 PGNASQVAELFHAYSGEIKSYNFSKLEPA---LLAIMLKTYLKSLTEPLIPYVYYEKFVS 105
G + + ++ A+ + + + S ++ LK Y + L PLI Y Y KF+
Sbjct: 49 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 108
Query: 106 LLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
+ L ++ P H LRYLMAHL R+
Sbjct: 109 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTL 149
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein,
GTPase-activating protein for RHO family members,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2ee5_A
Length = 209
Score = 75.0 bits (185), Expect = 9e-16
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
Query: 49 PGNASQVAELFHAY-SGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLL 107
GN + + + + ++ +A LK + L +PLIPY + + +
Sbjct: 52 SGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAA 111
Query: 108 SGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
+ L +V+ F ++ RY++ HL R+
Sbjct: 112 KIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQ 150
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium,
GTPase activation, SGC, alternative splicing, cytoplasm,
phosphoprotein; 2.30A {Homo sapiens}
Length = 228
Score = 75.1 bits (185), Expect = 2e-15
Identities = 23/98 (23%), Positives = 38/98 (38%)
Query: 49 PGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLS 108
G S++ L G I N+ +A MLK Y + L EPL+ E F+ +
Sbjct: 61 SGVKSRIQALRQMNEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 120
Query: 109 GSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
+ A + P + L+ L+ L+ + A
Sbjct: 121 YVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTA 158
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 78.0 bits (192), Expect = 2e-15
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLI 264
++S++ EWY+G I+R + L A+ GTFLVR++ T G Y L++ K +
Sbjct: 140 APSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGL 199
Query: 265 KIFH------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
+ H +G + + +F S+ +L+ YY + L RL
Sbjct: 200 NVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADG-----LCHRLTTVCPT 249
Score = 59.1 bits (143), Expect = 2e-09
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 14/99 (14%)
Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 474
+++R ++E LL + P GTFL+R S T G Y LS+ KH + + + G
Sbjct: 154 KITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG 213
Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ + SL LV +Y+ ++ D L L
Sbjct: 214 FYITSRTQFNSLQQLVAYYSKHA-----DGLCHRLTTVC 247
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein,
structural genomics, structural genomics consortium,
SGC; HET: 7PE; 1.49A {Homo sapiens}
Length = 201
Score = 73.8 bits (182), Expect = 2e-15
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 49 PGNASQVAELFHAYSGEIKSYNFSKLEPA-LLAIMLKTYLKSLTEPLIPYVYYEKFVSLL 107
G V EL + SK++ + +LK +L++L EPL+ + F+
Sbjct: 42 SGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAA 101
Query: 108 SGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMC 145
+++ + + ++ V + P + L +LM HL R+
Sbjct: 102 EITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVA 139
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 73.2 bits (179), Expect = 2e-15
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 217 WYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH------ 268
W++ ++SR D +L G+FL+R++ + G ++L++R N+ + H
Sbjct: 76 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 135
Query: 269 RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
NG + S F + EL+ +Y + S L TRL P
Sbjct: 136 DNGGFYISPRITFPGLHELVRHYTNASDG-----LCTRLSRPCQ 174
Score = 53.9 bits (129), Expect = 1e-08
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 474
+SR AE L G G+FLIR S + G ++LS+ KH + + G
Sbjct: 80 NLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGG 139
Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ P +P L LV HY +D L T L+ P
Sbjct: 140 FYISPRITFPGLHELVRHY-----TNASDGLCTRLSRPC 173
Score = 36.2 bits (83), Expect = 0.010
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 376
F + EL+ +Y + S L TRL P
Sbjct: 147 TFPGLHELVRHYTNASDG-----LCTRLSRPCQ 174
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics
consortium (SGC), GAP, alternative splicing, cell
junction, cell membrane; 1.77A {Homo sapiens}
Length = 229
Score = 74.3 bits (183), Expect = 2e-15
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 49 PGNASQVAELFHAY-SGEIKSYNFSKLEPALLAI--MLKTYLKSLTEPLIPYVYYEKFVS 105
G AS + L H + S + + ++ + K Y + L PL+ Y YEKF
Sbjct: 61 SGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSD 120
Query: 106 LLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
+S + D ++ ++Q P H+ L +LM HL+ +
Sbjct: 121 AVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLAD 161
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 75.8 bits (185), Expect = 3e-15
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 203 MSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNK 262
MSS +S + WY G +SR + +L G FLVRD+ST G+Y L++ +
Sbjct: 1 MSSARF-DSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVS 59
Query: 263 LIKIFHRNGRYGFSEPFKFTSVVELINYYKH 293
I R +F + L+ +YK
Sbjct: 60 HYIINSLPNRRFKIGDQEFDHLPALLEFYKI 90
Score = 62.7 bits (151), Expect = 5e-11
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
+SR +A+ L G+ G FL+R S+T G Y LS+ + H ++ F
Sbjct: 18 PVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRR-FKIGDQ 76
Query: 482 IYPSLGALVLHYAAN 496
+ L AL+ Y +
Sbjct: 77 EFDHLPALLEFYKIH 91
>3maz_A Signal-transducing adaptor protein 1; modular domain,
phosphotyrosine, specificity, cytoplasm, phosphoprotein,
SH2 domain, signaling protein; HET: PTR; 1.90A {Homo
sapiens}
Length = 125
Score = 71.4 bits (175), Expect = 3e-15
Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 210 NSLRDAEWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIK--- 265
+ L + +SR + + L + + G ++R + + Y++T+R+ IK
Sbjct: 10 DVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRP-GSDSRNYSITIRQEIDIPRIKHYK 68
Query: 266 IFHRNGRYGF--SEPFKFTSVVELINYYKHES 295
+ Y +P ++ +I+Y+ E+
Sbjct: 69 VMSVGQNYTIELEKPVTLPNLFSVIDYFVKET 100
Score = 64.1 bits (156), Expect = 1e-12
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 11/114 (9%)
Query: 405 SGAVASTVDFESGEKTWLVRMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCS--- 459
SG VD + +SR +A +L P G ++RP + Y+++I
Sbjct: 2 SGRAMDYVDVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSRNYSITIRQEIDI 61
Query: 460 GAPKHCLVYETERGFGFA-EPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
KH V + + E P+L +++ ++ +
Sbjct: 62 PRIKHYKVMSVGQNYTIELEKPVTLPNLFSVIDYF-----VKETRGNLRPFIAS 110
>3msx_B RHO GTPase-activating protein 20; protein-proten complex,
transition state, protein BI; HET: GDP; 1.65A {Homo
sapiens}
Length = 201
Score = 72.7 bits (179), Expect = 6e-15
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 49 PGNASQVAELFHAY-SGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLL 107
N EL SG + ++A +LK +L+++ + Y+ +VS++
Sbjct: 51 SANVKSCRELKEKLNSGV--EVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVM 108
Query: 108 SGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLAR 143
ND + + L+ P + LRYL L
Sbjct: 109 DQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHN 144
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural
genomics consortium, signaling protein; 2.25A {Homo
sapiens}
Length = 214
Score = 72.7 bits (179), Expect = 6e-15
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 49 PGNASQVAELFHAYSGEIKSYNFSKLEPA---LLAIMLKTYLKSLTEPLIPYVYYEKFVS 105
GN + + +L + E + N + ++ LK + + L EPL PY ++E+FV
Sbjct: 60 SGNLATIQKLRFIVNQE-EKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVE 118
Query: 106 LLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
+ ++ + +LVQ P + ++ L HL ++ A
Sbjct: 119 AIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVA 159
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural
genomics consortium, SGC, transferase; 2.09A {Homo
sapiens}
Length = 214
Score = 71.8 bits (176), Expect = 2e-14
Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 11/115 (9%)
Query: 83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLA 142
+K++L +L PL+ + L + P H LR+L+ HL
Sbjct: 90 IKSFLLALPAPLVTPEASAEARRALREAAGP---VGPALEPPTLPLHRALTLRFLLQHLG 146
Query: 143 RMCALQYARGVREPPTILIQSFTFVLPTFSSPPALPPRKLSPRPSATYVHSRQSS 197
R+ + A + L +F P P P SP P S S
Sbjct: 147 RVA--RRAPALGPAVRALGATFG---PLLLRAPPPPS---SPPPGGAPDGSEPSP 193
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 74.5 bits (183), Expect = 2e-14
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 49 PGNASQVAELFHAYSGEIKSYNFSKLEPA---LLAIMLKTYLKSLTEPLIPYVYYEKFVS 105
G + + ++ A+ + + + S ++ LK Y + L PLI Y Y KF+
Sbjct: 310 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 369
Query: 106 LLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
+ L ++ P H LRYLMAHL R+
Sbjct: 370 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTL 410
Score = 49.1 bits (117), Expect = 2e-06
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 218 YWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSE 277
+ G ISR+ D+L A+G++L+R++ + G YTL LR G + ++++ +
Sbjct: 54 FHGMISREAA-DQLLIVAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYDGKHF--VG 110
Query: 278 PFKFTSVVELI 288
+F S+ +L+
Sbjct: 111 EKRFESIHDLV 121
Score = 37.2 bits (86), Expect = 0.014
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 425 MSRAQAEALLSGRPDGTFLIR--PSTTGQYALSIVCSGAPKH 464
+SR A+ LL +G++LIR G Y L++ ++
Sbjct: 58 ISREAADQLLI-VAEGSYLIRESQRQPGTYTLALRFGSQTRN 98
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase,
transition state, GAP; HET: GDP; 1.65A {Homo sapiens}
SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Length = 198
Score = 70.7 bits (174), Expect = 2e-14
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 49 PGNASQVAELFHAY-SGEIKSYNFSKLE-PALLAIMLKTYLKSLTEPLIPYVYYEKFVSL 106
N V E+ Y G +F + L A++LKT+L+ L EPL+ + Y V
Sbjct: 51 SANTQVVREVQQKYNMGL--PVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGF 108
Query: 107 LSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
L+ + + ++Q P ++ LR+L A L ++ A
Sbjct: 109 LNIDESQRV-PATLQVLQTLPEENYQVLRFLTAFLVQISA 147
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 74.0 bits (182), Expect = 2e-14
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLI 264
++S++ EWY+G I+R + L A+ GTFLVR++ T G Y L++ K +
Sbjct: 57 APSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGL 116
Query: 265 KIFH------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
+ H +G + + +F S+ +L+ YY + L RL
Sbjct: 117 NVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADG-----LCHRLTTVCP 165
Score = 57.8 bits (140), Expect = 4e-09
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 474
+++R ++E LL + P GTFL+R S T G Y LS+ KH + + + G
Sbjct: 71 KITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG 130
Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS 518
+ + SL LV +Y+ ++ D L L
Sbjct: 131 FYITSRTQFNSLQQLVAYYSKHA-----DGLCHRLTTVCPTSKP 169
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 74.0 bits (182), Expect = 2e-14
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 208 ETNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLR-----KGGT 260
+SL EW++ ISR D +L G+F++RD+ T G Y+L++R +G T
Sbjct: 63 RVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDT 122
Query: 261 NKLIKIFHR-NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
K KI NG + S F+++ EL+++YK + L +L P
Sbjct: 123 VKHYKIRTLDNGGFYISPRSTFSTLQELVDHYKKGNDG-----LCQKLSVPCMS 171
Score = 58.2 bits (141), Expect = 3e-09
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSI-----VCSGAPKHCLVYETERGF 474
+SR AE L G G+F+IR S T G Y+LS+ KH + + G
Sbjct: 76 GISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGG 135
Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
+ P + + +L LV HY + D L L+ P
Sbjct: 136 FYISPRSTFSTLQELVDHYKKGN-----DGLCQKLSVPC 169
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition
state, gene regulation/signaling protein complex; HET:
GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A
2ngr_B*
Length = 242
Score = 70.1 bits (172), Expect = 8e-14
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 49 PGNASQVAELFHAY-SGEIKSYNFSKLE-PALLAIMLKTYLKSLTEPLIPYVYYEKFVSL 106
N V E+ Y G +F + L A++LKT+L+ L EPL+ + Y V
Sbjct: 87 SANTQVVREVQQKYNMGL--PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGF 144
Query: 107 LSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
L+ + + ++Q P ++ LR+L A L ++ A
Sbjct: 145 LNIDESQRV-PATLQVLQTLPEENYQVLRFLTAFLVQISA 183
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase,
tpase activating protein, CDC42, phosphoinositide
3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP:
a.116.1.1
Length = 216
Score = 69.3 bits (170), Expect = 1e-13
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 49 PGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLS 108
+ S +AEL + S + ++ +LA K YL L P+IP Y + +SL
Sbjct: 50 QSS-SNLAELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAP 108
Query: 109 GSNDRH-IGSRLFALVQ--DFPAHHFSALRYLMAHLARMCA 146
L L++ P ++ L+YL+ H ++
Sbjct: 109 EVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQ 149
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 69.5 bits (169), Expect = 1e-13
Identities = 21/85 (24%), Positives = 32/85 (37%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR 269
+S + WYWG +SR + L G FLVRD+ST G+Y L++ + I
Sbjct: 8 DSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSS 67
Query: 270 NGRYGFSEPFKFTSVVELINYYKHE 294
R + +
Sbjct: 68 GPRPPVPPSPAQPPPGVSPSRLRIG 92
Score = 61.4 bits (148), Expect = 7e-11
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
R+SR +A ALL G+ G FL+R S+T G Y LS+ + H ++ +
Sbjct: 19 RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPA 78
Query: 482 IYPS 485
P
Sbjct: 79 QPPP 82
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 68.6 bits (168), Expect = 4e-13
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 49 PGNASQVAELFHAY-SGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLL 107
G+ ++ L + GE S P +A +LK + + L EP++P +E +
Sbjct: 107 SGSVIRLKALKNKVDHGEG---CLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQ 163
Query: 108 SGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLAR 143
+ L H LRY L
Sbjct: 164 QLGTEEKN-KATLLLSCLLADHTVHVLRYFFNFLRN 198
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1,
RAB gtpases, APPL1, endocytic PATH golgi complex,
hydrolase-protein binding complex; 2.30A {Homo sapiens}
PDB: 2qv2_A
Length = 366
Score = 67.3 bits (164), Expect = 2e-12
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 40 GLSAANLF-EPGNASQVAELFHAY-SGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPY 97
+LF PG ++ ++ + ++ S +A L +L++L EP+I Y
Sbjct: 214 ACHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGS---NHSVAEALLIFLEALPEPVICY 270
Query: 98 VYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLAR 143
Y++ + ++ P H + RYLMA L
Sbjct: 271 ELYQRCLDSAYDPR------ICRQVISQLPRCHRNVFRYLMAFLRE 310
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.4 bits (164), Expect = 7e-12
Identities = 78/542 (14%), Positives = 161/542 (29%), Gaps = 181/542 (33%)
Query: 68 SYNFSKLEPALL---AIMLK-TYLKSLTEPLIPYVYYEKFVS---LLSGSNDRHIGSRLF 120
S L P A L+ + K L EP + ++ + L+ + +G +
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG----KFLG---Y 67
Query: 121 --ALVQDFPAHHFSA-LRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSSPPAL 177
+LV+ F L + Y G + I + L + L
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFEN----CYLEG-ND-----IHALAAKLLQ-ENDTTL 116
Query: 178 PPRKLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADG 237
K + Y+ +R +AK ++NS
Sbjct: 117 VKTKELIK---NYITARI----MAKRPFDKKSNSA------------------------- 144
Query: 238 TFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLS 297
L R G +L+ IF G+ G ++ + F EL + Y+
Sbjct: 145 --LFRAVGE------------GNAQLVAIF--GGQ-GNTDDY-FE---ELRDLYQT---- 179
Query: 298 QYNSTLD------TRLLYPVSRFSSDVDA------DIHS--NDVDKNPAPGVLRT--FSE 341
Y+ + L + R + D + +I + P L + S
Sbjct: 180 -YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 342 PFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADI-------HSNDVDKY 394
P V++L +Y ++ L + ++ + ++ + +
Sbjct: 239 PLIG--VIQLAHYV----VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 395 IN-----LKIAF------------TNLS-GAVASTVDFESGEKTWL--VR-MSRAQAEAL 433
+ + F T+L + +++ G + + + +++ Q +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 434 LSGRPDGTFLIRPSTTGQYALS-------IVCSGAPK--HCLVYE--------------- 469
+ + T P+ Q +S +V SG P+ + L
Sbjct: 353 V----NKTNSHLPAG-KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 470 --TERGFGF-------AEPFN---IYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA 517
+ER F A PF+ + P+ + N++ + D++ PV+
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI----PVYDTF 463
Query: 518 SG 519
G
Sbjct: 464 DG 465
Score = 53.5 bits (128), Expect = 1e-07
Identities = 44/263 (16%), Positives = 75/263 (28%), Gaps = 87/263 (33%)
Query: 295 SLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKN-PAPGVLRTFSEPFKFTSVVEL-- 351
+LS +L+ LL P + F A +K P P F+ + T+ EL
Sbjct: 10 TLSH--GSLEHVLLVPTASFFI---ASQLQEQFNKILPEP--TEGFAADDEPTTPAELVG 62
Query: 352 --INYYKHESLSQYNSTLDTRLLYPVSRFSSDV--DADIHSNDVDKYINLKIAFTNLSGA 407
+ Y D L ++ F + DIH+
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA------------------- 103
Query: 408 VASTVDFESGEKTWLVRMSRAQA--EAL-LSGRPDGTF----LIRPSTTGQ---YALSIV 457
+A+ + E+ + T + + A ++ RP L R G A+
Sbjct: 104 LAAKLLQEN-DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI--- 159
Query: 458 CSGAPKHCLVYETERGFG--------FAE---PFNIYPSLGALVLHYAANSLEE------ 500
FG F E + Y L ++ ++A +L E
Sbjct: 160 ----------------FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 501 -------HNDDLKTTLAYPVFAP 516
++ L P P
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTP 226
Score = 35.8 bits (82), Expect = 0.039
Identities = 28/162 (17%), Positives = 44/162 (27%), Gaps = 64/162 (39%)
Query: 18 TTSPFKSDNLKAASE----HYSKPDCGLSAANLFEPGNASQVAELFHAYSGE-IKSYNFS 72
SPF S L AS+ K + +A ++ P ++ + G ++ + S
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--------VYDTFDGSDLRVLSGS 474
Query: 73 KLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHF- 131
E + I + P V +E F A H
Sbjct: 475 ISERIVDCI--------IRLP----VKWET--------------------TTQFKATHIL 502
Query: 132 -------SALRYLMAHLARMCALQYARGVREPPTILIQSFTF 166
S L L GVR +I + T
Sbjct: 503 DFGPGGASGLGVLTHRNKD------GTGVR-----VIVAGTL 533
Score = 33.1 bits (75), Expect = 0.27
Identities = 43/251 (17%), Positives = 68/251 (27%), Gaps = 90/251 (35%)
Query: 268 HRNGRYGFSEPFKFTSVV-----ELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADI 322
H YGFS +V L ++ E + R Y F + VD +
Sbjct: 1652 HFKDTYGFS----ILDIVINNPVNLTIHFGGEK-GKR-----IRENYSAMIFETIVDGKL 1701
Query: 323 HSNDVDKNPAPGVLR-TFSEPF------KFTS----VVELINYYKHESLSQYNSTLDTRL 371
+ + K TF +FT ++ + +
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM---------EKAAF------ED 1746
Query: 372 LYPVSRFSSDVDADI--HSNDVDKYINLKIAFTNLSG------AVASTVDFESGEKTWLV 423
L S+ DA HS L G ++A + ES + +V
Sbjct: 1747 LK--SKGLIPADATFAGHS--------L--------GEYAALASLADVMSIESLVE--VV 1786
Query: 424 RMSRAQAEALL-----SGRPD-GTFLIRPS----TTGQYALSIVCSGAPKHCLVYETERG 473
R + GR + G I P + Q AL V +R
Sbjct: 1787 FY-RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV--------GKRT 1837
Query: 474 FGFAEP--FNI 482
E +N+
Sbjct: 1838 GWLVEIVNYNV 1848
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 65.4 bits (158), Expect = 8e-12
Identities = 21/86 (24%), Positives = 32/86 (37%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR 269
+S + WYWG +SR + L G FLVRD+ST G+Y L++ + I
Sbjct: 6 DSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSS 65
Query: 270 NGRYGFSEPFKFTSVVELINYYKHES 295
R + +
Sbjct: 66 GPRPPVPPSPAQPPPGVSPSRLRIGD 91
Score = 56.1 bits (134), Expect = 7e-09
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAE 478
R+SR +A ALL G+ G FL+R S+T G Y LS+ + H ++ +
Sbjct: 17 RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPP 73
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 63.5 bits (154), Expect = 1e-11
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 216 EWYWGDISRDDVNDKLA-DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYG 274
W++G I R + L+ DG FL+R++ + G+++L+++ G + K+
Sbjct: 59 PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKY 118
Query: 275 FSEPFKFTSVVELINYYKHESLS 297
F KF S+ EL++Y++ S+S
Sbjct: 119 FLWVVKFNSLNELVDYHRSTSVS 141
Score = 57.0 bits (137), Expect = 2e-09
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 402 TNLSGAVASTVDFESGEKTWLVRMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVC 458
G + + ++ RA+AE +LS R DG FLIR S + G ++LS+
Sbjct: 42 NGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKF 101
Query: 459 SGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSL 498
+H V G + + SL LV ++ + S+
Sbjct: 102 GNDVQHFKVLRDGAGK-YFLWVVKFNSLNELVDYHRSTSV 140
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 126
Score = 59.4 bits (143), Expect = 5e-11
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVN------DKLADTADGTFLVRDTSTKNGEYTLTLRK 257
S + +V + DG + +R++STK+G+ + +
Sbjct: 6 SGEDYEKVPLPNSVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDE 65
Query: 258 GGTN-KLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTL 303
+ +IF ++ ++ F SV ++ +Y L + S L
Sbjct: 66 TSNKVRNYRIFEKDSKFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLL 112
Score = 45.9 bits (108), Expect = 3e-06
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 429 QAEALLSGRPDGTFLIRPSTT--GQYALSIVCS-GAPKHCLVYETERGFGFAEPFNIYPS 485
+A + DG + IR S+T G+ + + ++ ++E + F ++ S
Sbjct: 34 KATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFEKDSKFYLEGEV-LFVS 92
Query: 486 LGALVLHYAANSLEEHNDDLKTTLAYP---VFAPASG 519
+G++V HY + L H L +P P+SG
Sbjct: 93 VGSMVEHYHTHVLPSHQS---LLLRHPYGYTSGPSSG 126
Score = 28.2 bits (62), Expect = 3.7
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTL 367
F SV ++ +Y L + S L
Sbjct: 83 YLEGEVLFVSVGSMVEHYHTHVLPSHQSLL 112
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine
binding domain, protein tyrosine kinase, signal
transduction, structural genomics; NMR {Homo sapiens}
Length = 118
Score = 54.4 bits (130), Expect = 2e-09
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 196 SSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLA-DTADGTFLVRDTSTKNGEYTLT 254
SS ++ + E + + +SR + L G L+R + ++T
Sbjct: 2 SSGSSGEVLAKEEARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVT 61
Query: 255 LRKGGTNKLI----KIFHRNGRY--GFSEPFKFTSVVELINYYKHES 295
R+ + K+ +Y +PF TS+ ++NY+ +
Sbjct: 62 TRQMHNGTHVVRHYKVKREGPKYVIDVEQPFSCTSLDAVVNYFVSHT 108
Score = 47.1 bits (111), Expect = 9e-07
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 421 WLVRMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAP----KHCLVYETERG 473
+++SR +A+ LL P G L+RPS +++ +H V
Sbjct: 24 CFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPK 83
Query: 474 F--GFAEPFNIYPSLGALVLHYAANS 497
+ +PF+ SL A+V ++ +++
Sbjct: 84 YVIDVEQPFSC-TSLDAVVNYFVSHT 108
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 55.6 bits (133), Expect = 1e-08
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 192 HSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNG 249
S +S+ + + + +Y+ +SR++ + L + + GTFL+RD S++ G
Sbjct: 18 GSHMASMTGGQQMTTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRD-SSRPG 76
Query: 250 EYTLTLRKGGTNKLIKIF----HRNGRYG------FSEPFKFTSVVELINYYKHESLSQ 298
EY+LT+R+ + + G F + L+N++K L++
Sbjct: 77 EYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTE 135
Score = 48.3 bits (114), Expect = 3e-06
Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 12/151 (7%)
Query: 379 SSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAEALLS--G 436
S HS+ + + + T + D + MSR +A LL
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMTTNGFDPFEWRSFYFPGMSREEAHKLLGEPQ 61
Query: 437 RPDGTFLIRPSTT-GQYALSIVCSGAP---KHCLVYETERGFGFAEP--FNI----YPSL 486
GTFL+R S+ G+Y+L++ + H L+ E I +P +
Sbjct: 62 VSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDI 121
Query: 487 GALVLHYAANSLEEHNDDLKTTLAYPVFAPA 517
AL+ H+ L E +
Sbjct: 122 PALLNHFKMRVLTEASLLAAYKKPIIEVVVG 152
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 55.7 bits (134), Expect = 2e-08
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W+ D+S D L G+FL R + G+++L++R G I+I + Y
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 276 SEPFKFTSVVELINYYKHE 294
KF ++ EL+ YY +
Sbjct: 64 YGGEKFATLTELVEYYTQQ 82
Score = 43.3 bits (102), Expect = 2e-04
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 424 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AE 478
+S AE LL GR G+FL RPS G ++LS+ H + + + E
Sbjct: 8 DLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGE 67
Query: 479 PFNIYPSLGALVLHYAAN--SLEEHNDDLKTTLAYPVFAPA 517
F +L LV +Y L++ + + L YP+
Sbjct: 68 KF---ATLTELVEYYTQQQGVLQDRDGTI-IHLKYPLNCSD 104
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 55.7 bits (134), Expect = 2e-08
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W+ D+S D L G+FL R + G+++L++R G I+I + Y
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 276 SEPFKFTSVVELINYYKHE 294
KF ++ EL+ YY +
Sbjct: 64 YGGEKFATLTELVEYYTQQ 82
Score = 42.6 bits (100), Expect = 3e-04
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 424 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AE 478
+S AE LL GR G+FL RPS G ++LS+ H + + + E
Sbjct: 8 DLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGE 67
Query: 479 PFNIYPSLGALVLHYAAN--SLEEHNDDLKTTLAYPVFAPA 517
F +L LV +Y L++ + L YP+
Sbjct: 68 KF---ATLTELVEYYTQQQGVLQDRDGT-IIHLKYPLNCSD 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 9e-08
Identities = 65/455 (14%), Positives = 126/455 (27%), Gaps = 145/455 (31%)
Query: 46 LFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTY--LKSL--TEPLIPYVYYE 101
+ S LF + S ++ + ++ Y L S TE P +
Sbjct: 55 IMSKDAVSGTLRLF----WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 102 KFVSLLSGSNDRHIGSRLFALVQDFPAHH------FSALR----------YLMAH----- 140
++ RL+ Q F ++ + LR ++
Sbjct: 111 MYIEQRD---------RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 141 ----LARMCALQYAR------GV--------REPPTILIQSFTFVLPTFSSPPALPPRKL 182
+A L Y + P T+L + + +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 183 SPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVND-KLADTADG--TF 239
+ + + + L + S P N L + +V + K + +
Sbjct: 222 NIKLRIHSIQAELRRL----LKSKPYENCL---------LVLLNVQNAKAWNAFNLSCKI 268
Query: 240 LVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSE---------------------- 277
L+ T T+ + T L T I + H + +
Sbjct: 269 LL--T-TRFKQVTDFL-SAATTTHISLDHHSM--TLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 278 ----PFKFTSVVELI-------NYYKHESLSQYNSTLDTRL--LYPV---SRFSS----D 317
P + + + E I + +KH + + + +++ L L P F
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 318 VDADIHSNDVDKNPAPGVLRTF------SEPFKFTSVVELINYYKHESL---SQYNSTLD 368
A I P +L S+ V +L Y SL ST+
Sbjct: 383 PSAHI--------P-TILLSLIWFDVIKSDVMVV--VNKLHKY----SLVEKQPKESTIS 427
Query: 369 TRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTN 403
+Y + + + +H + VD Y N+ F +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDS 461
Score = 41.0 bits (95), Expect = 0.001
Identities = 32/213 (15%), Positives = 71/213 (33%), Gaps = 47/213 (22%)
Query: 81 IMLKTYLKSLTE----PLIPYVYYEKFVSLLSGSNDRHIGSRL---FALVQDFPAHHFSA 133
++ K + SL E + + N+ + + + + + F +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 134 LR---YLMAHLAR-MCALQYARGVREPPTILIQSFTFVLPTFSSPPALPPRKLSPRPSAT 189
Y +H+ + +++ + + + F F+ +K+
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFL-----------EQKI------- 507
Query: 190 YVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDD-VNDKLADTADGTFLVR-DTSTK 247
R S A +SG N+L+ ++Y I +D ++L + FL + + +
Sbjct: 508 ----RHDST--AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLI 560
Query: 248 NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFK 280
+YT LR I + + F E K
Sbjct: 561 CSKYTDLLR-------IALMAEDEAI-FEEAHK 585
Score = 31.7 bits (71), Expect = 0.66
Identities = 34/196 (17%), Positives = 54/196 (27%), Gaps = 65/196 (33%)
Query: 314 FSSDVDA-DIH--------SNDVD-----KNPAPGVLRTF----SEP----FKFTSVVEL 351
F + D D+ ++D K+ G LR F S+ KF V
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 352 INY-YKHESLS-QYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVA 409
INY + + + +Y R D ND + +
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQR-------DRLYNDNQVFAKYNV---------- 131
Query: 410 STVDFESGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYE 469
+ +R +ALL RP LI G G+ K + +
Sbjct: 132 -----SRLQPYLKLR------QALLELRPAKNVLID----GV-------LGSGKTWVALD 169
Query: 470 TERGFGFAE--PFNIY 483
+ F I+
Sbjct: 170 VCLSYKVQCKMDFKIF 185
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 51.8 bits (124), Expect = 3e-07
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 217 WYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
W+ +I+ + + L DG+FL R + + G+ TL++R+ G IKI + Y
Sbjct: 6 WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDL 65
Query: 276 SEPFKFTSVVELINYYK--HESLSQYNSTLDTRLLYPV 311
KF ++ EL+ YY H L + N + L YP+
Sbjct: 66 YGGEKFATLAELVQYYMEHHGQLKEKNGDV-IELKYPL 102
Score = 43.3 bits (102), Expect = 2e-04
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 424 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AE 478
++ +AE LL R DG+FL RPS + G LS+ +GA H + T + E
Sbjct: 10 NITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGGE 69
Query: 479 PFNIYPSLGALVLHY--AANSLEEHNDDLKTTLAYPVFAP 516
F +L LV +Y L+E N D+ L YP+
Sbjct: 70 KF---ATLAELVQYYMEHHGQLKEKNGDV-IELKYPLNCA 105
Score = 38.3 bits (89), Expect = 0.006
Identities = 39/199 (19%), Positives = 79/199 (39%), Gaps = 23/199 (11%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKL----------IK 265
W+ G +S + L + G+FLVR++ + G++ L++R G +
Sbjct: 112 WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 171
Query: 266 IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQ-YNSTLDTRLLYPVSRFS-SDVDADIH 323
I + +Y +F S+ +L+ +YK + + + L + +R + +++++ +
Sbjct: 172 IRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTTRINAAEIESRVR 231
Query: 324 SNDVDKNPAPGVLRTFSEPF-KFTSVVELINYYKHESLSQYNSTLDTR----LLYPVSRF 378
V + F E F + Y + E Q N + R L + +R
Sbjct: 232 ELSKLAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKN-RYKNILPFDHTRV 290
Query: 379 S-SDVDADIHSNDVDKYIN 396
D D + +D YIN
Sbjct: 291 VLHDGDPNEPVSD---YIN 306
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 48.2 bits (114), Expect = 9e-07
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
+ +Y+ +SR++ + L + + GTFL+RD S++ GEY+LT+R+ + +
Sbjct: 7 DPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRD-SSRPGEYSLTVREADEGNAVCHY 65
Query: 268 ----HRNGRYG------FSEPFKFTSVVELINYYKHESLSQYN 300
G F + L+N++K L++ +
Sbjct: 66 LIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS 108
Score = 47.5 bits (112), Expect = 1e-06
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 12/106 (11%)
Query: 424 RMSRAQAEALLS--GRPDGTFLIRPSTT-GQYALSIVCS---GAPKHCLVYETERGF--- 474
MSR +A LL GTFL+R S+ G+Y+L++ + A H L+ E
Sbjct: 18 GMSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGT 77
Query: 475 ---GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA 517
G +P + AL+ H+ L E +
Sbjct: 78 AAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVG 123
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 48.0 bits (113), Expect = 5e-06
Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Query: 214 DAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRY 273
+G + R +VND L + GTF++R + G++ + IK +
Sbjct: 350 QEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYL---VQ 406
Query: 274 GFSEPFKFTSVVELI-NYYKHESLSQYNSTLDTRLLYP 310
+ + + + + +L Q+ + +
Sbjct: 407 PNDTAAAKKTFPDFLSEHSQFVNLLQWTKDTNGAPRFL 444
Score = 42.3 bits (98), Expect = 3e-04
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVC---SGAPKHCLVYETERGFG---F 476
M R + L + GTF+IR S GQ+ ++ + KH LV + F
Sbjct: 358 MGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDTAAAKKTF 417
Query: 477 AEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
+ + + +L + D +
Sbjct: 418 PDFLSEHSQF---------VNLLQWTKDTNGAPRFL 444
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES;
1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A
2l3t_A 3gxw_A 3gxx_A
Length = 197
Score = 41.8 bits (98), Expect = 2e-04
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTTGQYALSI---VCSGAPKHCLVYETER--GFGFAEP 479
+ QAE L + G F+IR S+ G L+I + +H + E E+ +
Sbjct: 14 FNGKQAEDYLRSKERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKENPLALGKV 73
Query: 480 FNI----YPSLGALVLHYAAN 496
+ Y L +++ Y N
Sbjct: 74 LVVEGQRYHDLDQIIVEYLQN 94
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A
{Antonospora locustae}
Length = 178
Score = 36.4 bits (84), Expect = 0.009
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTTGQY-ALSI-VCSGAPKHCLVYETERGFGFAEPFNI 482
+ ++E L FLIR + Y L I S H + E + +
Sbjct: 20 FNVTESENYLRSST-DDFLIRKGSRHGYCVLVIKFASDVFVHMKIEEHSEHYTCSN--KH 76
Query: 483 YPSLGALVLHYAANSLEEHNDDLKT 507
+ + ++ Y + + +K
Sbjct: 77 FEDIDEVISVYVRP-ILRNLKSIKA 100
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 36.4 bits (84), Expect = 0.023
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTTGQYALSI---VCSGAPKHCLVYETERGFGFA 477
+ QAE L + G F+IR S+ G L I + +H + E E+ A
Sbjct: 1030 FNGRQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENPLA 1085
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 35.6 bits (81), Expect = 0.037
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVY 468
+S+ + A+LS +P GTFL+R S + G + V +
Sbjct: 463 ISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQ 509
Score = 33.3 bits (75), Expect = 0.24
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 216 EWYWGDISRDDVNDKLADTADGTFLVR-DTSTKNGEYTLTLRKGGTNKLIKIFH 268
+ G IS++ L+ GTFL+R S+K G T T + + +I
Sbjct: 457 GYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQS 510
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 35.2 bits (80), Expect = 0.057
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT 449
+S+ + ALL + GTFL+R S +
Sbjct: 447 ISKERERALLKDQQPGTFLLRFSES 471
Score = 34.5 bits (78), Expect = 0.099
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVR-DTSTKNGEYTLT-LRKGGTNKLIKIF 267
L + G IS++ L D GTFL+R S++ G T T + +
Sbjct: 435 LPLWNDGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFH 494
Query: 268 H 268
Sbjct: 495 A 495
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 34.9 bits (79), Expect = 0.067
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT 449
+S+ + ALL + GTFL+R S +
Sbjct: 582 ISKERERALLKDQQPGTFLLRFSES 606
Score = 33.3 bits (75), Expect = 0.19
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVR-DTSTKNGEYTLT 254
L + G IS++ L D GTFL+R S++ G T T
Sbjct: 570 LPLWNDGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFT 615
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 34.8 bits (79), Expect = 0.071
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTTGQYALSI 456
+++ QA LL +PDGTFL+R S + ++I
Sbjct: 471 VNKQQAHDLLINKPDGTFLLRFSDSEIGGITI 502
Score = 33.6 bits (76), Expect = 0.17
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 214 DAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLT 254
+ G +++ +D L + DGTFL+R + ++ G T+
Sbjct: 463 NDGAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGITIA 503
>4gb7_A 6-aminohexanoate-dimer hydrolase; structural genomics, IDP05595,
national institute of allergy and infectious diseases;
HET: MSE; 1.60A {Bacillus anthracis}
Length = 422
Score = 31.0 bits (70), Expect = 1.0
Identities = 7/69 (10%), Positives = 20/69 (28%), Gaps = 7/69 (10%)
Query: 165 TFVLPTFSSPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPETNS---LRD----AEW 217
+ A P L S+ + ++ +T++ + + E
Sbjct: 66 INDVKNNPDQIARFPSALQNLDDFAVQRRFGSATPLKELLDDNKTDAFVVVHNGQLVYER 125
Query: 218 YWGDISRDD 226
Y+ + +
Sbjct: 126 YFNGYNESE 134
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain,
transferase, transferase-transferase inhibito; HET: 07J;
2.80A {Homo sapiens}
Length = 382
Score = 30.8 bits (70), Expect = 1.3
Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 268 HRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSND 326
H + +E F + +++ H+ T LY + + ++ +
Sbjct: 9 HHDYDIPTTENLYFNGMGYYHHHHHHDY-----DIPTTENLYFQGMLAGVSEYELPEDP 62
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain,
structural protein; 2.80A {Dictyostelium discoideum}
SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Length = 311
Score = 28.5 bits (62), Expect = 4.9
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 233 DTADGTFLVRDTSTKNGEYTLTLRKGGTN 261
D DGT+ + NG ++ ++ G +
Sbjct: 253 DNQDGTYTAAYSLVGNGRFSTGVKLNGKH 281
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 28.7 bits (65), Expect = 6.1
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 158 TILIQSFTFVLPTFSSPPALPPRK---LSPRPSATYVHSRQS 196
T L+Q F+F +PT P+ +SP P R
Sbjct: 436 TSLLQHFSFSVPTGQPRPSHHGVFAFLVSPSPYELCAVPRHH 477
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 28.7 bits (65), Expect = 6.3
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 158 TILIQSFTFVLPTFSSPPALPPRK---LSPRPSATYVHSRQS 196
L+Q F +P P+L + RQ+
Sbjct: 439 AWLLQRFDLEVPDDGQLPSLEGIPKVVFLIDSFKVKIKVRQA 480
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; NMR {Homo sapiens}
Length = 191
Score = 27.8 bits (61), Expect = 6.9
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
Query: 230 KLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELIN 289
L +G + + GE+ + ++K G + + SE + V
Sbjct: 48 LLKRLRNGHVGISFVPKETGEHLVHVKKNG--QHVASSPIPVVISQSEIGDASRVRVSGQ 105
Query: 290 YYKHESLSQYNS-TLDTR 306
+ +DTR
Sbjct: 106 GLHEGHTFEPAEFIIDTR 123
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 28.3 bits (64), Expect = 7.1
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 158 TILIQSFTFVLPTFSSPPALPPRK-----LSPRPSATYVHSRQ 195
L+Q+FT + P + P+L P L +P + R
Sbjct: 442 ARLLQAFTLLPPPVGALPSLQPDPYCGVNLKVQPFQVRLQPRG 484
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 124
Score = 27.1 bits (60), Expect = 7.2
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 226 DVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGG 259
+ + + DGT+ + T+ K G Y + +R GG
Sbjct: 56 EAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGG 89
>3hr6_A SPAA, putative surface-anchored fimbrial subunit; multiple IG-like
domains, cell WALL, peptidoglycan-anchor, structural
protein; 1.60A {Corynebacterium diphtheriae} PDB:
3htl_X*
Length = 436
Score = 28.2 bits (61), Expect = 7.3
Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 1/123 (0%)
Query: 164 FTFVLPTFSSPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDIS 223
PT P ++ V S+ + + K G + R A +
Sbjct: 275 VLPSNPTAQWDPEESGDAALRGMPSSRVSSKFGQITIEKSFDGNTPGADRTATFQLHRCE 334
Query: 224 RDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTS 283
D K + ++G+ L+ GT +L + + +F
Sbjct: 335 ADGSLVKSDPPISLDGKQEFVTGQDGKAVLSGIHLGTLQLESNVMKYTDAWAGKGTEFC- 393
Query: 284 VVE 286
+VE
Sbjct: 394 LVE 396
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 113
Score = 26.6 bits (59), Expect = 7.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 226 DVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGG 259
+ + DGT+ V G YTLT++ GG
Sbjct: 55 KAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGG 88
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine
biosynthesis, transsulfurat lyase; HET: PLP; 2.30A
{Arabidopsis thaliana} SCOP: c.67.1.3
Length = 464
Score = 28.0 bits (63), Expect = 9.4
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 31/84 (36%)
Query: 384 ADI--HS--------NDV--------DKYINLKIAFT-NLSGAVASTVDFES-----GEK 419
ADI HS +DV + + ++ F N G+ + F+ G K
Sbjct: 269 ADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAP--FDCWLCLRGIK 326
Query: 420 TWLVRMSRAQAEAL-----LSGRP 438
T +R+ + Q A LS P
Sbjct: 327 TMALRIEKQQENARKIAMYLSSHP 350
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.387
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,689,364
Number of extensions: 455844
Number of successful extensions: 1490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1155
Number of HSP's successfully gapped: 266
Length of query: 523
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 425
Effective length of database: 3,965,535
Effective search space: 1685352375
Effective search space used: 1685352375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)