Query psy8554
Match_columns 148
No_of_seqs 180 out of 1047
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 21:50:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00173 SH2 Src homology 2 dom 99.9 4.4E-24 9.6E-29 140.1 12.0 91 45-138 1-94 (94)
2 smart00252 SH2 Src homology 2 99.9 1.1E-22 2.4E-27 131.2 11.0 80 44-123 1-83 (84)
3 PF00017 SH2: SH2 domain; Int 99.9 2E-22 4.2E-27 128.1 9.3 73 46-118 1-77 (77)
4 KOG4637|consensus 99.9 3.1E-22 6.8E-27 156.5 7.8 100 41-141 20-122 (464)
5 KOG4637|consensus 99.8 5.6E-20 1.2E-24 144.0 5.6 117 28-144 316-434 (464)
6 KOG4278|consensus 99.8 4.2E-19 9E-24 148.1 8.3 101 40-145 148-251 (1157)
7 KOG4226|consensus 99.8 1.9E-17 4.2E-22 125.7 12.4 98 41-140 278-379 (379)
8 KOG1264|consensus 99.7 4.2E-18 9.1E-23 144.1 8.9 104 41-146 531-647 (1267)
9 KOG0790|consensus 99.7 1.3E-17 2.8E-22 133.8 8.3 97 42-140 108-217 (600)
10 KOG2996|consensus 99.7 9E-18 2E-22 138.1 7.2 98 41-139 682-782 (865)
11 KOG1264|consensus 99.7 4.7E-17 1E-21 137.8 8.0 94 40-140 644-740 (1267)
12 KOG0197|consensus 99.7 6.1E-17 1.3E-21 131.9 8.3 96 40-140 77-185 (468)
13 KOG4792|consensus 99.7 1.7E-16 3.6E-21 117.7 8.8 96 41-143 8-113 (293)
14 KOG0194|consensus 99.5 3.7E-13 8E-18 110.8 10.7 96 42-142 47-151 (474)
15 KOG1930|consensus 99.5 7.3E-14 1.6E-18 111.3 5.9 97 40-141 208-324 (483)
16 KOG0790|consensus 99.4 2.6E-13 5.5E-18 109.3 7.1 102 43-145 3-109 (600)
17 KOG3601|consensus 99.2 2.9E-12 6.2E-17 94.3 -1.3 83 42-125 56-141 (222)
18 KOG3697|consensus 98.7 1.6E-08 3.4E-13 77.8 5.3 96 42-141 199-344 (345)
19 KOG3751|consensus 98.4 9.2E-08 2E-12 78.8 1.9 97 39-140 514-619 (622)
20 PF14633 SH2_2: SH2 domain; PD 98.3 8.7E-06 1.9E-10 61.3 9.0 76 44-120 38-123 (220)
21 KOG4566|consensus 97.6 0.00031 6.6E-09 54.1 6.9 83 40-123 48-140 (258)
22 KOG1856|consensus 96.8 0.0028 6E-08 57.2 5.6 79 43-121 1107-1194(1299)
23 PF14633 SH2_2: SH2 domain; PD 96.7 0.0033 7.1E-08 47.5 4.7 76 44-121 135-219 (220)
24 KOG1856|consensus 95.3 0.06 1.3E-06 49.0 6.6 77 44-122 1205-1288(1299)
25 PF02762 Cbl_N3: CBL proto-onc 87.6 2.4 5.2E-05 26.8 5.2 40 45-84 3-47 (86)
26 KOG3667|consensus 66.6 13 0.00027 32.7 4.9 45 49-93 569-616 (682)
27 smart00557 IG_FLMN Filamin-typ 65.3 9 0.0002 24.5 3.1 27 59-85 50-78 (93)
28 PF07935 SSV1_ORF_D-335: ORF D 58.0 43 0.00093 20.8 5.5 45 64-122 5-49 (72)
29 PF09430 DUF2012: Protein of u 51.9 34 0.00075 23.1 4.3 34 62-95 27-61 (123)
30 PF15517 TBPIP_N: TBP-interact 51.2 14 0.00031 24.0 2.0 16 51-66 48-63 (99)
31 PF00630 Filamin: Filamin/ABP2 45.7 27 0.00058 22.1 2.8 25 61-85 66-92 (101)
32 KOG3508|consensus 43.1 0.78 1.7E-05 41.3 -6.1 80 41-121 227-311 (932)
33 KOG1785|consensus 41.6 42 0.0009 28.0 3.8 40 45-84 257-301 (563)
34 PF11149 DUF2924: Protein of u 41.3 98 0.0021 21.7 5.2 35 79-117 87-121 (136)
35 PF10505 NARG2_C: NMDA recepto 33.1 93 0.002 23.6 4.4 26 59-84 140-165 (220)
36 COG1724 Predicted RNA binding 32.7 62 0.0013 19.7 2.7 22 49-72 6-27 (66)
37 PF13266 DUF4057: Protein of u 32.6 1E+02 0.0022 24.4 4.6 32 46-77 50-83 (302)
38 PRK09570 rpoH DNA-directed RNA 32.2 86 0.0019 19.8 3.4 13 48-60 15-28 (79)
39 COG2012 RPB5 DNA-directed RNA 27.6 1.2E+02 0.0027 19.1 3.5 13 48-60 18-31 (80)
40 PF13983 YsaB: YsaB-like lipop 27.3 98 0.0021 19.1 2.9 30 63-92 45-76 (77)
41 PRK01842 hypothetical protein; 26.8 24 0.00051 25.1 0.2 62 11-72 3-72 (149)
42 COG4398 Uncharacterized protei 24.0 2.5E+02 0.0055 22.5 5.4 52 61-121 260-317 (389)
43 PF01191 RNA_pol_Rpb5_C: RNA p 22.5 1E+02 0.0022 19.2 2.5 13 48-60 12-25 (74)
44 PF14822 Vasohibin: Vasohibin 22.4 2E+02 0.0043 22.2 4.5 49 73-121 129-190 (246)
45 KOG3508|consensus 22.4 55 0.0012 30.1 1.7 49 45-93 82-135 (932)
46 PF13620 CarboxypepD_reg: Carb 20.9 1.1E+02 0.0025 18.2 2.5 26 61-86 34-59 (82)
47 COG5453 Uncharacterized conser 20.6 2.6E+02 0.0055 18.2 5.4 49 63-121 27-82 (96)
48 PF13912 zf-C2H2_6: C2H2-type 20.3 56 0.0012 15.3 0.8 16 106-121 9-24 (27)
No 1
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=99.92 E-value=4.4e-24 Score=140.14 Aligned_cols=91 Identities=42% Similarity=0.715 Sum_probs=83.2
Q ss_pred cccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHHhhC
Q psy8554 45 TWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAAN 121 (148)
Q Consensus 45 ~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y~~~ 121 (148)
+||| .|+|++||++|++.++|+||||.| .++.|+||++.+++++|++|....+++++......|+||.|||+||+.+
T Consensus 1 ~w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~f~sl~eLv~~y~~~ 80 (94)
T cd00173 1 PWYHGPISREEAEELLKKKPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDGYYLLGEGRSFPSLPELIEHYQKN 80 (94)
T ss_pred CccccCCCHHHHHHHHhcCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCCeEEecCCCccCCHHHHHHHHhhC
Confidence 6999 999999999999899999999999 6899999999999999999999988877776457899999999999999
Q ss_pred CccccCCCccceecccc
Q psy8554 122 SLEEHNDDLKTTLAYPV 138 (148)
Q Consensus 122 ~l~~~~~~l~~~L~~Pv 138 (148)
++ .+++.+.|+.|+
T Consensus 81 ~~---~~~~~~~L~~p~ 94 (94)
T cd00173 81 PL---SDGLGVKLRYPV 94 (94)
T ss_pred cc---CCCcccEeCCcC
Confidence 87 367889999886
No 2
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=99.89 E-value=1.1e-22 Score=131.25 Aligned_cols=80 Identities=40% Similarity=0.604 Sum_probs=72.0
Q ss_pred ccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHHhh
Q psy8554 44 KTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAA 120 (148)
Q Consensus 44 ~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y~~ 120 (148)
++||| .|+|++||++|.+.++|+||||.| .++.|+||++.++.++||+|...++|.|+++....|+||.|||+||+.
T Consensus 1 ~~w~~g~i~r~~Ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~~~~l~~~~~F~sl~eLI~~y~~ 80 (84)
T smart00252 1 QPWYHGFISREEAEKLLKNEGDGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDGKFYLDGGRKFPSLVELVEHYQK 80 (84)
T ss_pred CCeecccCCHHHHHHHHhcCCCcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCCcEEECCCCccCCHHHHHHHHhh
Confidence 47999 999999999998878999999999 489999999999999999999987666666656789999999999998
Q ss_pred CCc
Q psy8554 121 NSL 123 (148)
Q Consensus 121 ~~l 123 (148)
+++
T Consensus 81 ~~~ 83 (84)
T smart00252 81 NSL 83 (84)
T ss_pred CCC
Confidence 863
No 3
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=99.88 E-value=2e-22 Score=128.11 Aligned_cols=73 Identities=47% Similarity=0.737 Sum_probs=68.4
Q ss_pred ccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHH
Q psy8554 46 WLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY 118 (148)
Q Consensus 46 Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y 118 (148)
||| .|+|++||++|+. .++|+||||.| .+|.|+||++.+++++|++|.+.+++.++......|+||.+||+||
T Consensus 1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y 77 (77)
T PF00017_consen 1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENGGYFLSDGKKFPSLSDLVEHY 77 (77)
T ss_dssp TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTSEEESSTSSEBSSHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCceEEccCCCcCCCHHHHHHhC
Confidence 999 9999999999988 89999999999 6899999999999999999999999867776667899999999998
No 4
>KOG4637|consensus
Probab=99.87 E-value=3.1e-22 Score=156.55 Aligned_cols=100 Identities=30% Similarity=0.569 Sum_probs=93.0
Q ss_pred Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554 41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH 117 (148)
Q Consensus 41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~ 117 (148)
+..++||| .|||+++...|++++||+||||+- .+|.|+|+++.+|..+=++|.+.++.+.|.+. -.|+|+.+||+|
T Consensus 20 L~~a~WYWgdisReev~~~L~d~PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgKyGF~d~-ltf~SVVelIn~ 98 (464)
T KOG4637|consen 20 LQDAEWYWGDISREEVNKKLRDQPDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGKYGFSDP-LTFNSVVELINH 98 (464)
T ss_pred hhhccccccccCHHHHHHHhcCCCCCcEEeeccccCCCceEEEEecCCccceeeeEEecCccCCCCc-hhhHHHHHHHHH
Confidence 47789999 999999999999999999999988 69999999999999999999998877778765 689999999999
Q ss_pred HhhCCccccCCCccceecccccCC
Q psy8554 118 YAANSLEEHNDDLKTTLAYPVFAP 141 (148)
Q Consensus 118 y~~~~l~~~~~~l~~~L~~Pv~~~ 141 (148)
|+..+|..++..|.++|.+||.+-
T Consensus 99 yr~~SL~~yN~~LDvrLlyPVs~~ 122 (464)
T KOG4637|consen 99 YRNESLAQYNPKLDVRLLYPVSRY 122 (464)
T ss_pred HhhhHHHhhCcccceeeechHHHh
Confidence 999999999999999999999863
No 5
>KOG4637|consensus
Probab=99.80 E-value=5.6e-20 Score=144.01 Aligned_cols=117 Identities=59% Similarity=1.006 Sum_probs=107.6
Q ss_pred ccccccccCCCCCCccccccc-cCCHHHHHHHhcCCCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCC
Q psy8554 28 LSALNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPF 105 (148)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~ 105 (148)
...+-+.++++|+....-|+. .+.|..||.+|++.++|+||||.| ..|+|+|||..++.|+|+.|..+..|+.|....
T Consensus 316 qy~l~et~~~~ph~~e~~w~~~~a~r~kAe~llrg~~dGtFLIR~ss~~g~yalSV~~~~~V~HClIy~tatG~GFa~py 395 (464)
T KOG4637|consen 316 QYLLCETDENLPHNDEKTWRVRDANRDKAEELLRGKPDGTFLIRESSKGGCYALSVVHDGEVKHCLIYQTATGFGFAEPY 395 (464)
T ss_pred HHHHhcccccCcchhhhHhHHhhhhHHHHHHHhcCCCCCeEEEeeccCCCceEEEEEECCceeeeEEeeccccccccchh
Confidence 344667778899988889999 999999999999999999999998 999999999999999999999999999998877
Q ss_pred CCCCCHHHHHHHHhhCCccccCCCccceecccccCCCCC
Q psy8554 106 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 144 (148)
Q Consensus 106 ~~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p~ 144 (148)
..+.||.+||.||++++|..+++.+.++|++|+..+.+.
T Consensus 396 n~y~tlk~lV~hY~h~SLe~HnDal~ttLr~Pv~~~~~~ 434 (464)
T KOG4637|consen 396 NLYSTLKELVLHYQHTSLEQHNDALTTTLRYPVFAQVTS 434 (464)
T ss_pred HHHHHHHHHHHHHhhhhHHhhccccccccccceecccCC
Confidence 789999999999999999999999999999999876443
No 6
>KOG4278|consensus
Probab=99.78 E-value=4.2e-19 Score=148.07 Aligned_cols=101 Identities=30% Similarity=0.465 Sum_probs=93.4
Q ss_pred CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554 40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL 116 (148)
Q Consensus 40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~ 116 (148)
.++.+.||| .++|..||.+|...-.|+||||+| .+|.|+||+++.|+|.||+|..+.+|+.|+.....|.+|.|||.
T Consensus 148 SLeKhsWYHGpvSRsaaEy~LsSgInGSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~dgK~yvt~EsrF~TLaELVH 227 (1157)
T KOG4278|consen 148 SLEKHSWYHGPVSRSAAEYILSSGINGSFLVRESESSPGQYSISLRYEGRVYHYRINTDNDGKMYVTQESRFRTLAELVH 227 (1157)
T ss_pred chhhcccccCccccchhhhhhhcCcccceEEeeccCCCcceeEEEEecceEEEEEeeccCCccEEEeehhhhhHHHHHHh
Confidence 468889999 999999999999999999999999 99999999999999999999999999888877778999999999
Q ss_pred HHhhCCccccCCCccceecccccCCCCCC
Q psy8554 117 HYAANSLEEHNDDLKTTLAYPVFAPASGM 145 (148)
Q Consensus 117 ~y~~~~l~~~~~~l~~~L~~Pv~~~~p~~ 145 (148)
||.... +||.++|.+|.+|.+..+
T Consensus 228 HHStvA-----DGLittLhYPApK~nKpt 251 (1157)
T KOG4278|consen 228 HHSTVA-----DGLITTLHYPAPKKNKPT 251 (1157)
T ss_pred hccccc-----cceeEeeeccCccCCCCc
Confidence 999987 999999999999755443
No 7
>KOG4226|consensus
Probab=99.75 E-value=1.9e-17 Score=125.69 Aligned_cols=98 Identities=26% Similarity=0.386 Sum_probs=85.8
Q ss_pred Cccccccc-cCCHHHHHHHh-cCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554 41 HDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL 116 (148)
Q Consensus 41 ~~~~~Wyh-~isr~~Ae~lL-~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~ 116 (148)
+...+||+ .|+|.+||..| ....+|+||||+| ++|.|.+|++..++-+||++...++ -|.++. +.|.++.+||+
T Consensus 278 ~ag~~WYyG~itR~qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq~~d~-~ycIGq-RkF~tmd~Lv~ 355 (379)
T KOG4226|consen 278 FAGRPWYYGNITRHQAECALNEHGHEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQLVDN-VYCIGQ-RKFHTMDELVE 355 (379)
T ss_pred ccCCcceeccccHHHHHHHHhccCccCceEEecCCCCCcceeEEeeccCCCcceEEEEecc-eEEecc-ceeccHHHHHH
Confidence 47789999 99999999999 5589999999999 9999999999999999999987654 566665 68999999999
Q ss_pred HHhhCCccccCCCccceecccccC
Q psy8554 117 HYAANSLEEHNDDLKTTLAYPVFA 140 (148)
Q Consensus 117 ~y~~~~l~~~~~~l~~~L~~Pv~~ 140 (148)
||++.++-.+..|....|..+.++
T Consensus 356 HY~kaPIfts~qgEKLyLvr~Lpk 379 (379)
T KOG4226|consen 356 HYKKAPIFTSEQGEKLYLVRALPK 379 (379)
T ss_pred hhhcCCceecCCCceEEEeccCCC
Confidence 999999877667888888887754
No 8
>KOG1264|consensus
Probab=99.75 E-value=4.2e-18 Score=144.10 Aligned_cols=104 Identities=34% Similarity=0.544 Sum_probs=91.0
Q ss_pred Cccccccc-cCC-HHHHHHHhc------CCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCc---eEEecCCCC
Q psy8554 41 HDEKTWLV-RMS-RAQAEALLS------GRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERG---FGFAEPFNI 107 (148)
Q Consensus 41 ~~~~~Wyh-~is-r~~Ae~lL~------~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g---~~~~~~~~~ 107 (148)
|..+.||| .+. |.+|+++|. +.++|+||||+| ..|.|+||+..+|++.|++|+....+ +||...+..
T Consensus 531 H~~E~WFHgkle~R~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRIrsk~e~gt~Kyyl~dN~v 610 (1267)
T KOG1264|consen 531 HFGEKWFHGKLEGRTEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRIRSKMEGGTLKYYLTDNLV 610 (1267)
T ss_pred ccchhhhhcccccchHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEEEeeecCCceeEEEecchh
Confidence 55678999 998 999999994 357999999999 99999999999999999999875433 566666689
Q ss_pred CCCHHHHHHHHhhCCccccCCCccceecccccCCCCCCc
Q psy8554 108 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMT 146 (148)
Q Consensus 108 F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p~~~ 146 (148)
|+||-+||.||+++.|-+ ....++|+.||++++||..
T Consensus 611 fdslY~LI~~Y~~~~Lr~--aeF~m~LtePvPqp~~He~ 647 (1267)
T KOG1264|consen 611 FDSLYALIQHYRETHLRC--AEFEMRLTEPVPQPNPHES 647 (1267)
T ss_pred HHHHHHHHHHHHhccccc--cceEEEecCCCCCCCcccC
Confidence 999999999999999987 6688999999999999853
No 9
>KOG0790|consensus
Probab=99.73 E-value=1.3e-17 Score=133.77 Aligned_cols=97 Identities=29% Similarity=0.391 Sum_probs=84.8
Q ss_pred ccccccc-cCCHHHHHHHh-cCCCCceEEEEeC--CCCCEEEEEEeCC---------eeEEEEEEEeCCceEEecCCCCC
Q psy8554 42 DEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPS--TTGQYALSIVCSG---------APKHCLVYETERGFGFAEPFNIY 108 (148)
Q Consensus 42 ~~~~Wyh-~isr~~Ae~lL-~~~~~G~FLvR~s--~~~~~~Lsv~~~~---------~v~H~~I~~~~~g~~~~~~~~~F 108 (148)
.++.||| .++..+||.|| .....|+||||+| .+|.|+||++.++ +|.|..|...+ |.|-+++...|
T Consensus 108 tserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~-~kydVGgge~F 186 (600)
T KOG0790|consen 108 TSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQE-GKYDVGGGERF 186 (600)
T ss_pred hhhhhhccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEEEEEecc-cccccCCcccc
Confidence 3457999 99999999999 4579999999999 9999999999865 89999998864 67777888899
Q ss_pred CCHHHHHHHHhhCCccccCCCccceecccccC
Q psy8554 109 PSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140 (148)
Q Consensus 109 ~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~ 140 (148)
+|+.+||+||+++++.+ ..|..+.|++|+..
T Consensus 187 ~sltdLidhykknpmvE-t~gtvv~LrqP~na 217 (600)
T KOG0790|consen 187 DSLTDLVEHYKKNPMVE-TLGTVVYLRQPLNA 217 (600)
T ss_pred chHHHHHHHhccCchhh-hcceeEEeeccccc
Confidence 99999999999999876 36677899999863
No 10
>KOG2996|consensus
Probab=99.72 E-value=9e-18 Score=138.10 Aligned_cols=98 Identities=35% Similarity=0.464 Sum_probs=90.6
Q ss_pred Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554 41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH 117 (148)
Q Consensus 41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~ 117 (148)
++.++||. .|.|.+||..|+++++|+||||.+ ..+.|++|+++++.++|++|... +|++.+...+.|+|+.|||+|
T Consensus 682 ~s~~~WyaG~MERaqaes~Lk~~~ngT~LVR~r~kea~e~AISikynnevKHikI~~~-dg~~~i~E~k~F~sl~ELVey 760 (865)
T KOG2996|consen 682 YSEFPWYAGEMERAQAESTLKNRPNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETN-DGKVHITEDKKFNSLVELVEY 760 (865)
T ss_pred hhhhhhhcchHhhhhhhhHhhcCCCceEEEEecccchhheeEEEEeccccceEEEEec-CCeEEechhhhhhhHHHHHHH
Confidence 46679999 999999999999999999999999 88899999999999999999987 677777777899999999999
Q ss_pred HhhCCccccCCCccceeccccc
Q psy8554 118 YAANSLEEHNDDLKTTLAYPVF 139 (148)
Q Consensus 118 y~~~~l~~~~~~l~~~L~~Pv~ 139 (148)
|+.++|...-..|.+.|++|..
T Consensus 761 Yq~~sLke~Fk~LDTtLk~Pyk 782 (865)
T KOG2996|consen 761 YQSHSLKEIFKALDTTLKFPYK 782 (865)
T ss_pred HHhccHHHHHHHhhhhhcCCCc
Confidence 9999998877889999999997
No 11
>KOG1264|consensus
Probab=99.69 E-value=4.7e-17 Score=137.83 Aligned_cols=94 Identities=36% Similarity=0.565 Sum_probs=80.3
Q ss_pred CCccccccc-cCCHHHHHHHhcC-CCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554 40 HHDEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL 116 (148)
Q Consensus 40 ~~~~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~ 116 (148)
.|++++||| .++|++||++|.. ..||+||||.+ ..+.|+||++.+|+++|++|.++ |..|+-+...|.||.+||+
T Consensus 644 ~He~k~W~~as~treqAE~mL~rvp~DGaFLiR~~~~~nsy~iSfr~~gkikHcRi~rd--Gr~fvl~t~~FesLv~lv~ 721 (1267)
T KOG1264|consen 644 PHESKPWYHASLTREQAEDMLMRVPRDGAFLIRKREGSNSYAISFRARGKIKHCRINRD--GRHFVLGTSAFESLVELVS 721 (1267)
T ss_pred cccCCccccccccHHHHHHHHhhCccCcceEEEeccCCceEEEEEEEcCcEeEEEEccC--ceEEEeccHHHHHHHHHHH
Confidence 367889999 9999999999954 78899999977 89999999999999999999874 5444433467999999999
Q ss_pred HHhhCCccccCCCccceecccccC
Q psy8554 117 HYAANSLEEHNDDLKTTLAYPVFA 140 (148)
Q Consensus 117 ~y~~~~l~~~~~~l~~~L~~Pv~~ 140 (148)
||.+++|.. .++|++||..
T Consensus 722 yY~k~~lyR-----~mkLr~PVne 740 (1267)
T KOG1264|consen 722 YYEKHPLYR-----KMKLRYPVNE 740 (1267)
T ss_pred HHhcChhhh-----cccccCcCCH
Confidence 999999764 5789999853
No 12
>KOG0197|consensus
Probab=99.69 E-value=6.1e-17 Score=131.95 Aligned_cols=96 Identities=30% Similarity=0.494 Sum_probs=85.7
Q ss_pred CCccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeCC------eeEEEEEEEeCCceEE--ecCCC
Q psy8554 40 HHDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCSG------APKHCLVYETERGFGF--AEPFN 106 (148)
Q Consensus 40 ~~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~~------~v~H~~I~~~~~g~~~--~~~~~ 106 (148)
.++.++||+ .|+|++||+.|.. +..|+||||+| .+|.|+||++... .++||+|...++|.++ +....
T Consensus 77 ~l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~~~~~~~~~~~ 156 (468)
T KOG0197|consen 77 KLSDEPWFFGKISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGGGLYPYIDERE 156 (468)
T ss_pred ccccCCchhccccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCCCeecCCCHHH
Confidence 467789999 9999999977754 56699999999 9999999999865 8999999999888666 77678
Q ss_pred CCCCHHHHHHHHhhCCccccCCCccceecccccC
Q psy8554 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140 (148)
Q Consensus 107 ~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~ 140 (148)
.|+++.+||+||+.++ +|++.+|..||.+
T Consensus 157 ~F~~l~~lv~~~~~~~-----~gl~~~l~~p~~~ 185 (468)
T KOG0197|consen 157 LFSSLQQLVNYYSKNA-----DGLCTRLRDPCSK 185 (468)
T ss_pred hhhhHHHHHhhhhccC-----cchhhcccCchhc
Confidence 9999999999999997 9999999999987
No 13
>KOG4792|consensus
Probab=99.68 E-value=1.7e-16 Score=117.74 Aligned_cols=96 Identities=30% Similarity=0.450 Sum_probs=80.0
Q ss_pred Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCc-------eEEecCCCCCCC
Q psy8554 41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERG-------FGFAEPFNIYPS 110 (148)
Q Consensus 41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g-------~~~~~~~~~F~s 110 (148)
.+...||+ .|||+||..+|.+.+.|.||||+| .+|.|+|||+.+.+|.||.|...... .+-++. +.|++
T Consensus 8 ~er~swYfg~mSRqeA~~lL~~~r~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIgd-Q~Fd~ 86 (293)
T KOG4792|consen 8 SERSSWYFGPMSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIGD-QEFDS 86 (293)
T ss_pred hhccceecCcccHHHHHHHhcCcceeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeeecc-ccccc
Confidence 35568999 999999999999988999999999 69999999999999999999872211 344554 88999
Q ss_pred HHHHHHHHhhCCccccCCCccceecccccCCCC
Q psy8554 111 LGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS 143 (148)
Q Consensus 111 l~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p 143 (148)
|+.|++||+-+-|.. +.|..|.+|..-
T Consensus 87 lPaLL~fykihyLdt------ttLi~p~~r~~~ 113 (293)
T KOG4792|consen 87 LPALLEFYKIHYLDT------TTLIEPAKRSRQ 113 (293)
T ss_pred hHHHHhheeEeeecc------cccccccccccc
Confidence 999999999887643 678888877543
No 14
>KOG0194|consensus
Probab=99.47 E-value=3.7e-13 Score=110.80 Aligned_cols=96 Identities=29% Similarity=0.401 Sum_probs=78.4
Q ss_pred ccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCC---CE-EEEEEeC--CeeEEEEEEEeCCceEEecCCCCCCCHH
Q psy8554 42 DEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTG---QY-ALSIVCS--GAPKHCLVYETERGFGFAEPFNIYPSLG 112 (148)
Q Consensus 42 ~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~---~~-~Lsv~~~--~~v~H~~I~~~~~g~~~~~~~~~F~sl~ 112 (148)
..++||| .+.|++|+.+|. .+|+||||.+ ..| .+ +||+... ..++||.|.+.+++ ++......|+|+.
T Consensus 47 ~~~~~yHG~l~red~~~lL~--~~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~-~~~~~~~~F~si~ 123 (474)
T KOG0194|consen 47 RELPYYHGLLPREDAEKLLK--NDGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNL-FFFEGLRKFPTIS 123 (474)
T ss_pred hcCccccccccHhHHHHHhC--CCCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCe-eEEeccccCCcHH
Confidence 4469999 999999999999 6999999999 333 24 8999885 78899999998774 4444457899999
Q ss_pred HHHHHHhhCCccccCCCccceecccccCCC
Q psy8554 113 ALVLHYAANSLEEHNDDLKTTLAYPVFAPA 142 (148)
Q Consensus 113 eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~ 142 (148)
+||.||+.+.+.+ .+....|+.|+.++.
T Consensus 124 ~li~~~~~~~~~~--~~~~~~L~~PI~r~~ 151 (474)
T KOG0194|consen 124 ELVNYYKFSKLEI--TGKNFFLKRPIPRQK 151 (474)
T ss_pred HHHHHHHhcccce--eccceeecccccccc
Confidence 9999999999887 334558999998753
No 15
>KOG1930|consensus
Probab=99.47 E-value=7.3e-14 Score=111.29 Aligned_cols=97 Identities=31% Similarity=0.473 Sum_probs=80.5
Q ss_pred CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeC---------------CeeEEEEEEEeCCceEE
Q psy8554 40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCS---------------GAPKHCLVYETERGFGF 101 (148)
Q Consensus 40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~---------------~~v~H~~I~~~~~g~~~ 101 (148)
...++-||. +|+|++|..||+++++|+||||+| .+|.|-|.++.. ..|+||.|+....|-.+
T Consensus 208 ~DTSKyWYKP~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkGVkL 287 (483)
T KOG1930|consen 208 KDTSKYWYKPNISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKGVKL 287 (483)
T ss_pred ecccccccCCCCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCceec
Confidence 456778999 999999999999999999999999 999999999851 35999999998888555
Q ss_pred e--cCCCCCCCHHHHHHHHhhCCccccCCCccceecccccCC
Q psy8554 102 A--EPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141 (148)
Q Consensus 102 ~--~~~~~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~ 141 (148)
. .....|.||..||-.|.-.+ -.|+|.|..|=..+
T Consensus 288 KGC~nEP~FGSLSALV~QHSIt~-----LALPckL~iP~rDp 324 (483)
T KOG1930|consen 288 KGCDNEPVFGSLSALVYQHSITA-----LALPCKLVIPDRDP 324 (483)
T ss_pred cCCCCCCccchhHHHHhhccchh-----hhcceeEeccCCCc
Confidence 3 23478999999998887776 44788888876543
No 16
>KOG0790|consensus
Probab=99.44 E-value=2.6e-13 Score=109.32 Aligned_cols=102 Identities=24% Similarity=0.334 Sum_probs=85.8
Q ss_pred cccccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHH
Q psy8554 43 EKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY 118 (148)
Q Consensus 43 ~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y 118 (148)
+..||| .|+..+||.||+. ..+|+||.|.| ++|.|+|+++.++.+.|++|....+. |-+-++..|.++.|||+||
T Consensus 3 s~~wfh~~~~g~~ae~Ll~~~g~dgsfl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~~~-~~l~~gekfat~~ELvqyy 81 (600)
T KOG0790|consen 3 SRRWFHPDLSGVEAETLLKERGVDGSFLARPSESNPGDFSLSVRRGDKVTHIKIQNSGDF-YDLYGGEKFATLAELVQYY 81 (600)
T ss_pred chhhcCCCccchhHHHHHHHhccccchhhccccCCCcceeEEEEeCCceEEEEEeecCcc-ccccCCccccchHHHHHHH
Confidence 457999 9999999999976 79999999999 99999999999999999999875443 3344447899999999999
Q ss_pred hhCC-ccccCCCccceecccccCCCCCC
Q psy8554 119 AANS-LEEHNDDLKTTLAYPVFAPASGM 145 (148)
Q Consensus 119 ~~~~-l~~~~~~l~~~L~~Pv~~~~p~~ 145 (148)
+.+. -...+.|..+.|++|+....|..
T Consensus 82 me~~~~lkekng~~ielK~pl~cAdpts 109 (600)
T KOG0790|consen 82 MEHHGQLKEKNGDVIELKYPLNCADPTS 109 (600)
T ss_pred HhhhHHHHhcCCCEEEecCCCccCCchh
Confidence 9886 22336888999999998877754
No 17
>KOG3601|consensus
Probab=99.16 E-value=2.9e-12 Score=94.26 Aligned_cols=83 Identities=30% Similarity=0.386 Sum_probs=76.0
Q ss_pred ccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHH
Q psy8554 42 DEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY 118 (148)
Q Consensus 42 ~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y 118 (148)
...+||+ .|+|..||++|....+|+||+|.+ .+|.|.++++....|.|+++.+...|+++... ..|+|+.+|++||
T Consensus 56 ~~~~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~-skfnslnplv~Y~ 134 (222)
T KOG3601|consen 56 KPHEWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWS-SKFNSLNPLVSYH 134 (222)
T ss_pred ccccceecccccchhhhhhhccCcchhhhhhhhcCcccccccccCCCCceeccccccCccccccch-hhccCCCCCcccC
Confidence 3568999 999999999998899999999999 99999999999999999999998889898875 5799999999999
Q ss_pred hhCCccc
Q psy8554 119 AANSLEE 125 (148)
Q Consensus 119 ~~~~l~~ 125 (148)
+.++...
T Consensus 135 rt~s~~r 141 (222)
T KOG3601|consen 135 RTASQSR 141 (222)
T ss_pred ccccccc
Confidence 9987654
No 18
>KOG3697|consensus
Probab=98.74 E-value=1.6e-08 Score=77.80 Aligned_cols=96 Identities=23% Similarity=0.207 Sum_probs=80.1
Q ss_pred ccccccc-cCCHHHHHHHhcCCCCceEEEEeC------------------------------------------------
Q psy8554 42 DEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS------------------------------------------------ 72 (148)
Q Consensus 42 ~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s------------------------------------------------ 72 (148)
...+||+ .++++.++..|. .+|.|++|.+
T Consensus 199 ~k~pp~~g~l~~~~~q~~l~--~~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~~ 276 (345)
T KOG3697|consen 199 SKMPPPGGFLDTRLKQRPLA--PDAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDET 276 (345)
T ss_pred ccCCCCCCccchhhhhccCC--cccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhcccc
Confidence 4568999 999999999998 7788887743
Q ss_pred -CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHHhhCCccccCCCccceecccccCC
Q psy8554 73 -TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141 (148)
Q Consensus 73 -~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~ 141 (148)
.+|.|+|+-..++..+|..+. +.+|..- ..++.|+|+..||+||..+.|++.+.|...-|++||.++
T Consensus 277 ~~~gqyvltgl~~~~~khlllv-dpegvvr-tkd~~fdsishli~yh~~~~lpiis~~sel~l~~pv~r~ 344 (345)
T KOG3697|consen 277 TTPGQYVLTGLQSGQPKHLLLV-DPEGVVR-TKDRRFDSISHLINYHMDNHLPIISAGSELCLQQPVERK 344 (345)
T ss_pred CCCccEEEecccCCCcceEEEE-CCcccee-cccchhhHHHHHHHHhhhccCceecCcchhhhhCccccc
Confidence 467888988888999998775 3455333 344789999999999999999999999999999999875
No 19
>KOG3751|consensus
Probab=98.42 E-value=9.2e-08 Score=78.84 Aligned_cols=97 Identities=27% Similarity=0.371 Sum_probs=79.0
Q ss_pred CCCccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCC-c-eEEe--cCCCCCC
Q psy8554 39 PHHDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETER-G-FGFA--EPFNIYP 109 (148)
Q Consensus 39 ~~~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~-g-~~~~--~~~~~F~ 109 (148)
..+..+.||| .|+|+++.++++. -.+|-||+|+| ++..|++++....+++||+|.-.+. | .++. .+...|.
T Consensus 514 ~~h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~~t~~~g~t~~s 593 (622)
T KOG3751|consen 514 AIHRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTFFTLDDGPTKFS 593 (622)
T ss_pred hhcccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCceeeccCCCCcccc
Confidence 4467789999 9999999998854 58899999999 8888999999999999999986443 3 2332 2236799
Q ss_pred CHHHHHHHHhhCCccccCCCccceecccccC
Q psy8554 110 SLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140 (148)
Q Consensus 110 sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~ 140 (148)
++..|+++|+-++ .-+.|.|+..|.+
T Consensus 594 d~~ql~~~~ql~k-----~~l~~al~~~~~r 619 (622)
T KOG3751|consen 594 DLIQLVEFYQLNK-----GVLPCALKHCCER 619 (622)
T ss_pred ccccccchhhcCC-----CcchHHHHHHHHh
Confidence 9999999999885 6788888887754
No 20
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=98.26 E-value=8.7e-06 Score=61.32 Aligned_cols=76 Identities=21% Similarity=0.281 Sum_probs=54.9
Q ss_pred ccccccCCHHHHHHHhcCCCCceEEEEeCC--CCCEEEEEEe-CCeeEEEEEEEeCC------c-eEEecCCCCCCCHHH
Q psy8554 44 KTWLVRMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVC-SGAPKHCLVYETER------G-FGFAEPFNIYPSLGA 113 (148)
Q Consensus 44 ~~Wyh~isr~~Ae~lL~~~~~G~FLvR~s~--~~~~~Lsv~~-~~~v~H~~I~~~~~------g-~~~~~~~~~F~sl~e 113 (148)
+|-|++++-.+|++.|.+...|.++||+|. ....+++++. +|...|+.|...+. | ...++ +..|.+|.|
T Consensus 38 HP~F~n~~~~qAe~~L~~~~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~-~~~yeDLDE 116 (220)
T PF14633_consen 38 HPLFKNFNYKQAEEYLADQDVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIG-GEEYEDLDE 116 (220)
T ss_dssp STTEESS-HHHHHHHHCCS-TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEET-TEEESSHHH
T ss_pred CCCccCCCHHHHHHHHhcCCCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEEC-CeEECCHHH
Confidence 356669999999999998889999999993 3457888886 46677998876432 2 23455 478999999
Q ss_pred HHHHHhh
Q psy8554 114 LVLHYAA 120 (148)
Q Consensus 114 LI~~y~~ 120 (148)
||.-|-.
T Consensus 117 ii~r~V~ 123 (220)
T PF14633_consen 117 IIARHVE 123 (220)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 9998844
No 21
>KOG4566|consensus
Probab=97.56 E-value=0.00031 Score=54.11 Aligned_cols=83 Identities=20% Similarity=0.268 Sum_probs=64.7
Q ss_pred CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEe-----cC--CCCCC
Q psy8554 40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFA-----EP--FNIYP 109 (148)
Q Consensus 40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~-----~~--~~~F~ 109 (148)
.+.+..||| .+++.+|+..|...+.|+|+||++ .+-.+.|+++...+.+..+|.+.++. +.. .. -..|+
T Consensus 48 ~~~~~g~~w~~~~~~~~~~~l~~~p~~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~~s-fr~ds~~~~~~pl~~~e 126 (258)
T KOG4566|consen 48 LLDSSGHYWGLETANEAELCLGQEPRGTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQDSS-FRLDSSHRHTPPLISFE 126 (258)
T ss_pred ccccCCcccccccchhHHHhhcCCCccceeeecCcCccccceeEeeeccCCCCccccccccc-eecccccccCCCcccCh
Confidence 355568999 999999999998789999999999 66667999998888888888765532 222 11 24799
Q ss_pred CHHHHHHHHhhCCc
Q psy8554 110 SLGALVLHYAANSL 123 (148)
Q Consensus 110 sl~eLI~~y~~~~l 123 (148)
++..+|.||+...+
T Consensus 127 ~~~~~~~~y~~~~~ 140 (258)
T KOG4566|consen 127 DVEVLIHHYRQSRK 140 (258)
T ss_pred hHHHHHHhhhhhhh
Confidence 99999999966553
No 22
>KOG1856|consensus
Probab=96.77 E-value=0.0028 Score=57.18 Aligned_cols=79 Identities=25% Similarity=0.329 Sum_probs=58.2
Q ss_pred cccccccCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeC-CeeEEEEEEEeCC------ceEEecCCCCCCCHHH
Q psy8554 43 EKTWLVRMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCS-GAPKHCLVYETER------GFGFAEPFNIYPSLGA 113 (148)
Q Consensus 43 ~~~Wyh~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~-~~v~H~~I~~~~~------g~~~~~~~~~F~sl~e 113 (148)
.+|.||+++-++|+.+|.....|.++||+| .....+++++.. +...|+.|...+. |..+.-++..|..|.|
T Consensus 1107 ~HP~F~n~n~eQAe~yL~~~d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~feDLDE 1186 (1299)
T KOG1856|consen 1107 AHPLFKNLNAEQAEAYLSDMDQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFEDLDE 1186 (1299)
T ss_pred cCccccCCCHHHHHHHHHhcccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCcccccHHH
Confidence 357888999999999999999999999999 555567777764 5567777754221 2222223478999999
Q ss_pred HHHHHhhC
Q psy8554 114 LVLHYAAN 121 (148)
Q Consensus 114 LI~~y~~~ 121 (148)
+|.-|-..
T Consensus 1187 iI~r~vqp 1194 (1299)
T KOG1856|consen 1187 IIARYVQP 1194 (1299)
T ss_pred HHHHHHHH
Confidence 99888553
No 23
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=96.67 E-value=0.0033 Score=47.48 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=53.1
Q ss_pred ccccccCCHHHHHHHhcC-----CCCceEEEEeC--CCCCEEEEEEeCCeeEEEE--EEEeCCceEEecCCCCCCCHHHH
Q psy8554 44 KTWLVRMSRAQAEALLSG-----RPDGTFLIRPS--TTGQYALSIVCSGAPKHCL--VYETERGFGFAEPFNIYPSLGAL 114 (148)
Q Consensus 44 ~~Wyh~isr~~Ae~lL~~-----~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~--I~~~~~g~~~~~~~~~F~sl~eL 114 (148)
...|..-+++++|++|.. ..--.|.+..+ .+|.|.|+...+...+|.. |....+|++|-+ ..|+++.+|
T Consensus 135 h~kf~~g~~~e~e~~L~~~k~~nP~~i~Y~f~~~~~~PG~F~L~y~~~~~~~~~~~~v~V~p~Gf~~r~--~~f~~~~~L 212 (220)
T PF14633_consen 135 HRKFKDGTKEEVEEWLKEEKKANPKRIPYAFCISKEHPGYFILSYKPNKNPRHEYWPVKVTPDGFRFRK--QVFPSLDRL 212 (220)
T ss_dssp STTEESS-CCCCHHHHHCHHHHSTTS-EEEEEE-TTSTTEEEEEEESSTTS-EEEEEEEE-SSSEEETT--EEESSHHHH
T ss_pred CccccCCCHHHHHHHHHHHHHhCCCCceEEEEECCCCCCEEEEEEEcCCCCceEEeeEEEecCcEEEec--ccCCCHHHH
Confidence 344545567788888853 23345666766 9999999999876666555 877888987754 589999999
Q ss_pred HHHHhhC
Q psy8554 115 VLHYAAN 121 (148)
Q Consensus 115 I~~y~~~ 121 (148)
+.+++.+
T Consensus 213 ~~~FK~~ 219 (220)
T PF14633_consen 213 INWFKKH 219 (220)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9999864
No 24
>KOG1856|consensus
Probab=95.25 E-value=0.06 Score=48.99 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=61.4
Q ss_pred ccccccCCHHHHHHHhcC--CCCceEE---EEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554 44 KTWLVRMSRAQAEALLSG--RPDGTFL---IRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL 116 (148)
Q Consensus 44 ~~Wyh~isr~~Ae~lL~~--~~~G~FL---vR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~ 116 (148)
+.+|..=++++.|++|+. +.++.+. +.-| .+|.|.|+.+.++.++|--|.....|++|.+ +.|+|+.+|..
T Consensus 1205 hkyf~~Gt~~~~ek~L~~~k~~np~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p~g~~~rg--~~f~tld~L~~ 1282 (1299)
T KOG1856|consen 1205 HKYFFTGTKKEVEKLLRDYKKVNPKKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVPEGFRFRG--QNFGTLDELCR 1282 (1299)
T ss_pred hhHhhcCCHHHHHHHHHHHhccCCCeeeEEEEecccCCceEEEEeccCCCccceeEEEcccceEEec--ccchhHHHHHH
Confidence 345554458889999963 3444444 4556 9999999999999999999988999988876 47999999999
Q ss_pred HHhhCC
Q psy8554 117 HYAANS 122 (148)
Q Consensus 117 ~y~~~~ 122 (148)
+++.+-
T Consensus 1283 ~FK~h~ 1288 (1299)
T KOG1856|consen 1283 WFKRHY 1288 (1299)
T ss_pred HHHHHh
Confidence 999875
No 25
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=87.63 E-value=2.4 Score=26.75 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=31.6
Q ss_pred cccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeC
Q psy8554 45 TWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCS 84 (148)
Q Consensus 45 ~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~ 84 (148)
+-|. .|+=+|+...|+. ..+|+|+.|-| +-|.+++-....
T Consensus 3 pgY~AFlTYdevk~~L~~~~~kpGsYiFRlSCTrLGQWAIGyV~~ 47 (86)
T PF02762_consen 3 PGYMAFLTYDEVKARLQHYRDKPGSYIFRLSCTRLGQWAIGYVTQ 47 (86)
T ss_dssp TTBETT--HHHHHHHHGGGTTSTTEEEEEEESSSTTSEEEEEEET
T ss_pred CceeEEEeHHHHHHHHHHHhCCcccEEEeeccccccceeEEEEcC
Confidence 5577 8899999999964 68899999999 899998876554
No 26
>KOG3667|consensus
Probab=66.60 E-value=13 Score=32.74 Aligned_cols=45 Identities=31% Similarity=0.454 Sum_probs=34.7
Q ss_pred cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCe-eEEEEEE
Q psy8554 49 RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGA-PKHCLVY 93 (148)
Q Consensus 49 ~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~-v~H~~I~ 93 (148)
.++++.+.++|...++|+|++|-| .-|..++......+ ..|+.|.
T Consensus 569 finkq~~~~ll~~~~~GtflLrfs~S~~GgiT~~~v~~~~~~~~~~i~ 616 (682)
T KOG3667|consen 569 FINKQQERALLMTKPDGTFLLRFSASEEGGITIAWVEDQKQNLIMMIM 616 (682)
T ss_pred ecchhhhhhhhhcCCCCCceeeeeccccCceeEEecccccccceeEec
Confidence 778999999998899999999988 67777666554332 2477776
No 27
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=65.32 E-value=9 Score=24.45 Aligned_cols=27 Identities=22% Similarity=0.573 Sum_probs=22.6
Q ss_pred hcCCCCceEEEEeC--CCCCEEEEEEeCC
Q psy8554 59 LSGRPDGTFLIRPS--TTGQYALSIVCSG 85 (148)
Q Consensus 59 L~~~~~G~FLvR~s--~~~~~~Lsv~~~~ 85 (148)
+.++.+|+|.|+-. ..|.|.|++..++
T Consensus 50 v~d~~dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 50 VKDNGDGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred EEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence 35678899999988 8889999998875
No 28
>PF07935 SSV1_ORF_D-335: ORF D-335-like protein; InterPro: IPR012922 The sequences featured in this family are similar to a probable integrase (P20214 from SWISSPROT) expressed by the SSV1 virus of the archaeon Sulfolobus shibatae. This protein may be necessary for the integration of the virus into the host genome by a process of site-specific recombination [].
Probab=57.96 E-value=43 Score=20.77 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=28.0
Q ss_pred CceEEEEeCCCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHHhhCC
Q psy8554 64 DGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANS 122 (148)
Q Consensus 64 ~G~FLvR~s~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y~~~~ 122 (148)
-|+|+||+. .++-.=|+|+...+|..-. ..-.+|.++|+.|-+..
T Consensus 5 ~gd~~irE~-----------KGkYYVY~iE~~~~G~~re---~YVGpL~~VVe~Yik~K 49 (72)
T PF07935_consen 5 FGDIIIRER-----------KGKYYVYKIEKDINGERRE---TYVGPLDDVVETYIKLK 49 (72)
T ss_pred cCcEEEEEe-----------CCeEEEEEEEeccCCceee---eeeccHHHHHHHHHhcc
Confidence 367777773 2333446676655553221 34567999999998874
No 29
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=51.88 E-value=34 Score=23.12 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=25.8
Q ss_pred CCCceEEEEeCCCCCEEEEEEeCC-eeEEEEEEEe
Q psy8554 62 RPDGTFLIRPSTTGQYALSIVCSG-APKHCLVYET 95 (148)
Q Consensus 62 ~~~G~FLvR~s~~~~~~Lsv~~~~-~v~H~~I~~~ 95 (148)
+.+|+|.+++=..|.|.|.+...+ .+..++|...
T Consensus 27 ~~dG~F~f~~Vp~GsY~L~V~s~~~~F~~~RVdV~ 61 (123)
T PF09430_consen 27 RSDGSFVFHNVPPGSYLLEVHSPDYVFPPYRVDVS 61 (123)
T ss_pred cCCCEEEeCCCCCceEEEEEECCCccccCEEEEEe
Confidence 489999999888899999987653 3445666655
No 30
>PF15517 TBPIP_N: TBP-interacting protein N-terminus; PDB: 2CZR_A.
Probab=51.18 E-value=14 Score=24.01 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=9.9
Q ss_pred CHHHHHHHhcCCCCce
Q psy8554 51 SRAQAEALLSGRPDGT 66 (148)
Q Consensus 51 sr~~Ae~lL~~~~~G~ 66 (148)
+|++|+.+-+....|-
T Consensus 48 skE~AdKla~k~~~gi 63 (99)
T PF15517_consen 48 SKEEADKLAEKEEVGI 63 (99)
T ss_dssp SHHHHHHHSS---SSE
T ss_pred CHHHHHHhhhccCCCe
Confidence 7999999876444443
No 31
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=45.68 E-value=27 Score=22.11 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=17.3
Q ss_pred CCCCceEEEEeC--CCCCEEEEEEeCC
Q psy8554 61 GRPDGTFLIRPS--TTGQYALSIVCSG 85 (148)
Q Consensus 61 ~~~~G~FLvR~s--~~~~~~Lsv~~~~ 85 (148)
+..+|+|.|+-. ..|.|.|++..++
T Consensus 66 ~~~~G~y~v~y~p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 66 DNGDGTYTVSYTPTEPGKYKISVKING 92 (101)
T ss_dssp EESSSEEEEEEEESSSEEEEEEEEESS
T ss_pred ECCCCEEEEEEEeCccEeEEEEEEECC
Confidence 356777777766 6777777777655
No 32
>KOG3508|consensus
Probab=43.06 E-value=0.78 Score=41.31 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=50.6
Q ss_pred Cccccccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHH-HH
Q psy8554 41 HDEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGA-LV 115 (148)
Q Consensus 41 ~~~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~e-LI 115 (148)
.....|+| +|...+|.+.|.. ..-+.|++|.. ..+.|.+-........|+.+.......|+.+. ..++.+.. -|
T Consensus 227 ~~~ar~q~i~i~~~e~y~~~~e~~~~~y~~lc~~lnp~l~~~~kEe~a~aLvr~l~s~~~ak~fl~Dl-~~~e~~r~~~i 305 (932)
T KOG3508|consen 227 RIKARWQSINILPMEAYDELAETGTYNYFLLCPVLNPPLDVSLKEELANALVRVLISTGRAKQFLMDL-RMKEVLRLGDI 305 (932)
T ss_pred cccccccccccCchHHHHHHHHHhccceeeeecccCCCcchhHHHHHHHHHHHHHHhcchHHHHhhcc-hhHhhhhccch
Confidence 34568999 9999999999965 45569999988 66666544434455666666554333333332 34444444 46
Q ss_pred HHHhhC
Q psy8554 116 LHYAAN 121 (148)
Q Consensus 116 ~~y~~~ 121 (148)
+||...
T Consensus 306 dhlifr 311 (932)
T KOG3508|consen 306 DHLIFR 311 (932)
T ss_pred hhhhhh
Confidence 666554
No 33
>KOG1785|consensus
Probab=41.59 E-value=42 Score=27.98 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=33.3
Q ss_pred cccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeC
Q psy8554 45 TWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCS 84 (148)
Q Consensus 45 ~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~ 84 (148)
+-|. .++-+|....|+. ...|+|+.|-| ..|.+.+-....
T Consensus 257 PGYmAFLTYDEVk~RLqk~~~KpGSYIFRlSCTRlGQWAIGYVt~ 301 (563)
T KOG1785|consen 257 PGYMAFLTYDEVKARLQKYIKKPGSYIFRLSCTRLGQWAIGYVTA 301 (563)
T ss_pred CceeEEeeHHHHHHHHHHHhcCCCceEEeeccCcccceeEEEEcC
Confidence 5577 8888999988854 68999999999 899999877653
No 34
>PF11149 DUF2924: Protein of unknown function (DUF2924); InterPro: IPR021322 This entry is represented by Bacteriophage WO, Gp30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This bacterial family of proteins has no known function.
Probab=41.30 E-value=98 Score=21.69 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=20.7
Q ss_pred EEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554 79 LSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH 117 (148)
Q Consensus 79 Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~ 117 (148)
|.--++|..+...| .++|+-+. .+.|.||..+=.+
T Consensus 87 LvREw~G~~h~V~V--~~dGfey~--Gr~y~SLSaIAr~ 121 (136)
T PF11149_consen 87 LVREWNGREHEVTV--LEDGFEYQ--GRRYKSLSAIARA 121 (136)
T ss_pred EEEEECCEEEEEEE--eCCCEEEC--CccccCHHHHHHH
Confidence 33335666555555 45663333 3689999987544
No 35
>PF10505 NARG2_C: NMDA receptor-regulated gene protein 2 C-terminus; InterPro: IPR019535 The transition of neuronal cells from pre-cursor to mature state is regulated by the N-methyl-d-aspartate (NMDA) receptor, a glutamate-gated ion channel that is permeable to Ca2+. NMDA receptors probably mediate this activity by permitting expression of NARG2. NARG2 (NMDA receptor-regulated gene protein 2) is transiently expressed, being a regulatory protein that is present in the nucleus of dividing cells and then down-regulated as progenitors exit the cell cycle and begin to differentiate. NARG2 contains repeats of (S/T)PXX, (11 in mouse, 6 in human), a putative DNA-binding motif that is found in many gene-regulatory proteins including Kruppel, Hunchback and Antennapedi [].
Probab=33.10 E-value=93 Score=23.57 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=19.0
Q ss_pred hcCCCCceEEEEeCCCCCEEEEEEeC
Q psy8554 59 LSGRPDGTFLIRPSTTGQYALSIVCS 84 (148)
Q Consensus 59 L~~~~~G~FLvR~s~~~~~~Lsv~~~ 84 (148)
|.+-++|.||+|....+.|++..+..
T Consensus 140 L~~L~pG~YLLrh~~~d~f~~i~k~~ 165 (220)
T PF10505_consen 140 LSSLQPGSYLLRHTPGDSFVLIYKSS 165 (220)
T ss_pred HcCCCCCcEEEEecCCCCcEEEEEcC
Confidence 34569999999998666676655543
No 36
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=32.67 E-value=62 Score=19.73 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=18.4
Q ss_pred cCCHHHHHHHhcCCCCceEEEEeC
Q psy8554 49 RMSRAQAEALLSGRPDGTFLIRPS 72 (148)
Q Consensus 49 ~isr~~Ae~lL~~~~~G~FLvR~s 72 (148)
.++..+++..|. .+|-|++|..
T Consensus 6 ~~~~ke~ik~Le--~~Gf~~vrqk 27 (66)
T COG1724 6 RMKAKEVIKALE--KDGFQLVRQK 27 (66)
T ss_pred cCCHHHHHHHHH--hCCcEEEEee
Confidence 457788899998 9999999974
No 37
>PF13266 DUF4057: Protein of unknown function (DUF4057)
Probab=32.58 E-value=1e+02 Score=24.36 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=23.8
Q ss_pred ccc-cCCHHHHHHHhcCCCCceEEEEeC-CCCCE
Q psy8554 46 WLV-RMSRAQAEALLSGRPDGTFLIRPS-TTGQY 77 (148)
Q Consensus 46 Wyh-~isr~~Ae~lL~~~~~G~FLvR~s-~~~~~ 77 (148)
-|- .++-+|||.|++.+++-.+-.++. -.|.|
T Consensus 50 ~fGgQvT~EEAEsL~KRKpCS~~K~KEmTGSGIF 83 (302)
T PF13266_consen 50 VFGGQVTEEEAESLNKRKPCSGYKMKEMTGSGIF 83 (302)
T ss_pred ccCCcCCHHHHHHHhccCcCccccceeccccccc
Confidence 455 999999999998766666666666 45554
No 38
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=32.25 E-value=86 Score=19.82 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=11.0
Q ss_pred c-cCCHHHHHHHhc
Q psy8554 48 V-RMSRAQAEALLS 60 (148)
Q Consensus 48 h-~isr~~Ae~lL~ 60 (148)
| -++.+|++.+|+
T Consensus 15 H~iLs~eE~~~lL~ 28 (79)
T PRK09570 15 HEILSEEEAKKLLK 28 (79)
T ss_pred eEECCHHHHHHHHH
Confidence 5 789999999995
No 39
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=27.60 E-value=1.2e+02 Score=19.13 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=10.8
Q ss_pred c-cCCHHHHHHHhc
Q psy8554 48 V-RMSRAQAEALLS 60 (148)
Q Consensus 48 h-~isr~~Ae~lL~ 60 (148)
| -++++|++++|+
T Consensus 18 H~vls~eE~~~vLk 31 (80)
T COG2012 18 HEVLSEEEAKEVLK 31 (80)
T ss_pred eEEcCHHHHHHHHH
Confidence 5 788899988885
No 40
>PF13983 YsaB: YsaB-like lipoprotein
Probab=27.32 E-value=98 Score=19.12 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=23.8
Q ss_pred CCceEEEEeC--CCCCEEEEEEeCCeeEEEEE
Q psy8554 63 PDGTFLIRPS--TTGQYALSIVCSGAPKHCLV 92 (148)
Q Consensus 63 ~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I 92 (148)
-.|+|-+|-. ....|+-|+-.+|++.|...
T Consensus 45 fQgSYEm~G~T~r~E~FvCSFD~dGqFLHLSM 76 (77)
T PF13983_consen 45 FQGSYEMRGYTARKEGFVCSFDADGQFLHLSM 76 (77)
T ss_pred hccceEeecccccccceEEeECCCCcEEEeec
Confidence 5688988877 77778888888888888753
No 41
>PRK01842 hypothetical protein; Provisional
Probab=26.76 E-value=24 Score=25.13 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=36.4
Q ss_pred eccCCCCCCCCCCCCCCccccccccCCCCCCccccccc-c-CCHHHHHHHhcC------CCCceEEEEeC
Q psy8554 11 SASTSGGPDTSCPPMPSLSALNRTERDLPHHDEKTWLV-R-MSRAQAEALLSG------RPDGTFLIRPS 72 (148)
Q Consensus 11 ~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~Wyh-~-isr~~Ae~lL~~------~~~G~FLvR~s 72 (148)
++++++..+.+||+.....-.....+..+--....=|| . -.-..||+|+++ ..+..||++.-
T Consensus 3 ~~~~~~~~~~~CPCgS~~~~~~~~~~~~~Y~~CC~p~h~g~~~a~TAE~LMRSRYSAy~l~~~dYL~~T~ 72 (149)
T PRK01842 3 PATMAPARPDACPCGGAAPGAAANARAPRYAACCGRFIDGGAAAPTALELMRSRYSAYVLGATDYLRATW 72 (149)
T ss_pred cccCCCCCCCCCCCCCCccccccccccccHHHHhHHHHCCCCCCCCHHHHHHHHHHHHHhcccchhhhcc
Confidence 35788888888999866521122211111112223455 4 456788988864 37778888744
No 42
>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.00 E-value=2.5e+02 Score=22.55 Aligned_cols=52 Identities=33% Similarity=0.317 Sum_probs=31.0
Q ss_pred CCCCceEEEEeC-----CCCCEEEEE-EeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHHhhC
Q psy8554 61 GRPDGTFLIRPS-----TTGQYALSI-VCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAAN 121 (148)
Q Consensus 61 ~~~~G~FLvR~s-----~~~~~~Lsv-~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y~~~ 121 (148)
....|+||||.- ..|...+-- ...+....|+++-. ...=+.|.-|+++|+..
T Consensus 260 ~~~qGDFlIR~lLG~DPs~GaIaIgd~Vr~G~~lQF~~RD~---------~as~~dL~~l~er~~~e 317 (389)
T COG4398 260 APGQGDFLIRGLLGADPSTGAIAIGEVVRVGATLQFQVRDA---------AAADKDLRLLVERAAAE 317 (389)
T ss_pred CCCCCceEeeeccccCCCCCceeecceeccCcEEEEEEccc---------ccchhHHHHHHHHHHhh
Confidence 458899999977 444444422 22345555555321 12345677788888874
No 43
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=22.48 E-value=1e+02 Score=19.15 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=10.2
Q ss_pred c-cCCHHHHHHHhc
Q psy8554 48 V-RMSRAQAEALLS 60 (148)
Q Consensus 48 h-~isr~~Ae~lL~ 60 (148)
| -++.+|++++|.
T Consensus 12 H~ils~eE~~~lL~ 25 (74)
T PF01191_consen 12 HEILSEEEKKELLK 25 (74)
T ss_dssp EEEE-HHHHHHHHH
T ss_pred eEEcCHHHHHHHHH
Confidence 6 889999999984
No 44
>PF14822 Vasohibin: Vasohibin
Probab=22.44 E-value=2e+02 Score=22.24 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=29.3
Q ss_pred CCCCEEEEEEe---CCeeEEEEEEEeCCceEE-e---------cCCCCCCCHHHHHHHHhhC
Q psy8554 73 TTGQYALSIVC---SGAPKHCLVYETERGFGF-A---------EPFNIYPSLGALVLHYAAN 121 (148)
Q Consensus 73 ~~~~~~Lsv~~---~~~v~H~~I~~~~~g~~~-~---------~~~~~F~sl~eLI~~y~~~ 121 (148)
.-..|.|+++. +...+|+.+...-+|.|= + ...-.|+|+.+||.-|...
T Consensus 129 ~~~Rfpi~Fks~~~g~~~~HIVL~v~~~~~~GalGlSRr~~Lm~k~l~~~sls~li~~y~~s 190 (246)
T PF14822_consen 129 DVERFPISFKSQFSGRVFRHIVLGVRCGGKYGALGLSRRSDLMYKPLEFRSLSDLIFDYKES 190 (246)
T ss_pred cceEeeceeEEEEcCcEEEEEEEEEEECCeecccccccchhhcccchhhHHHHHHHHHHHHH
Confidence 44467777764 344566655443344331 1 1224799999999988653
No 45
>KOG3508|consensus
Probab=22.37 E-value=55 Score=30.07 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=37.9
Q ss_pred cccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeC-CeeEEEEEE
Q psy8554 45 TWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCS-GAPKHCLVY 93 (148)
Q Consensus 45 ~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~-~~v~H~~I~ 93 (148)
.||| ++.|.-++..++. ...|.++||.+ .++.+.++.... +.+.|+++.
T Consensus 82 ~~~~~~lrr~i~e~r~r~~e~s~~~wi~e~~~lp~~~~l~~~~~~d~~l~~r~~ 135 (932)
T KOG3508|consen 82 KWYMENLRRTIAESRLRRAENSGSYWIREAKRLPGKGKLSCLLQLDGTLYARTI 135 (932)
T ss_pred hhhhcchhhhcccchhhccCCceeEEeeccCcCCCcceeehhhccchhHHhhhh
Confidence 6999 9999999999854 67799999999 788887765432 336676664
No 46
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=20.91 E-value=1.1e+02 Score=18.21 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=17.9
Q ss_pred CCCCceEEEEeCCCCCEEEEEEeCCe
Q psy8554 61 GRPDGTFLIRPSTTGQYALSIVCSGA 86 (148)
Q Consensus 61 ~~~~G~FLvR~s~~~~~~Lsv~~~~~ 86 (148)
...+|.|.++.-.+|.|.|.+...+-
T Consensus 34 Td~~G~f~~~~l~~g~Y~l~v~~~g~ 59 (82)
T PF13620_consen 34 TDSDGRFSFEGLPPGTYTLRVSAPGY 59 (82)
T ss_dssp --TTSEEEEEEE-SEEEEEEEEBTTE
T ss_pred ECCCceEEEEccCCEeEEEEEEECCc
Confidence 35889999886655888888876654
No 47
>COG5453 Uncharacterized conserved protein [Function unknown]
Probab=20.60 E-value=2.6e+02 Score=18.21 Aligned_cols=49 Identities=27% Similarity=0.320 Sum_probs=31.1
Q ss_pred CCceEEEEeC---CCCCEEEEEEe----CCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHHhhC
Q psy8554 63 PDGTFLIRPS---TTGQYALSIVC----SGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAAN 121 (148)
Q Consensus 63 ~~G~FLvR~s---~~~~~~Lsv~~----~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y~~~ 121 (148)
..+.|||+.. ..|.|.|+=+. ++.++-++ |+-. ..|.++.|-++.-.+.
T Consensus 27 ehkdflI~atP~~eggQyr~aG~I~k~idgevk~h~---------FiRa-D~ft~~~DAve~~lkK 82 (96)
T COG5453 27 EHKDFLIYATPISEGGQYRLAGRIEKEIDGEVKVHR---------FIRA-DLFTSLDDAVEIALKK 82 (96)
T ss_pred cccCeEEEeeecccCCeEEEeeEeeeecCceeeeee---------eeeh-hhccchhHHHHHHHHH
Confidence 5578999988 67778776543 33343332 2222 3689999988875443
No 48
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=20.26 E-value=56 Score=15.28 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=13.1
Q ss_pred CCCCCHHHHHHHHhhC
Q psy8554 106 NIYPSLGALVLHYAAN 121 (148)
Q Consensus 106 ~~F~sl~eLI~~y~~~ 121 (148)
..|.++.+|++|-+.+
T Consensus 9 ~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 9 KTFSSLSALREHKRSH 24 (27)
T ss_dssp EEESSHHHHHHHHCTT
T ss_pred CccCChhHHHHHhHHh
Confidence 5799999999997654
Done!