RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8554
(148 letters)
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 148 bits (375), Expect = 3e-45
Identities = 65/113 (57%), Positives = 80/113 (70%), Gaps = 2/113 (1%)
Query: 31 LNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
L E LPHH+E+TW V +++R QAE +LSG+ DGTFLIR S+ G YA S+V G K
Sbjct: 181 LMEDEDALPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRESSQRGCYACSVVVDGDTK 240
Query: 89 HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
HC++Y T GFGFAEP+N+Y SL LVLHY SL +HND L TLA+PV AP
Sbjct: 241 HCVIYRTATGFGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRAP 293
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 141 bits (358), Expect = 7e-45
Identities = 60/106 (56%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Query: 38 LPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYET 95
+PHHDEKTW V +R +AE LL G+ DGTFL+R S+ G YA S+V G KHC++ +T
Sbjct: 4 IPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKT 63
Query: 96 ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
G+GFAEP+N+Y SL LVLHY SL +HND L TLAYPV+A
Sbjct: 64 ATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYAQ 109
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 118 bits (297), Expect = 2e-35
Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETE 96
+ W M R Q + LL GT+LIR ++A+SI + KH V E +
Sbjct: 12 DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKD 71
Query: 97 RGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 144
E + SL LV +Y +SL+E L TTL YP P+SG
Sbjct: 72 NWIHITEAKK-FDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGPSSG 118
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Length = 138
Score = 107 bits (269), Expect = 5e-31
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
M RA AE++L+ R DGTFL+R ++A+SI + KH + E + E
Sbjct: 32 PMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEK-K 90
Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ L LV Y NSL++ L TTL +P
Sbjct: 91 AFRGLTELVEFYQQNSLKDCFKSLDTTLQFPF 122
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 111 bits (277), Expect = 3e-30
Identities = 46/86 (53%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Query: 31 LNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
L + DLPHHDEKTW V +R +AE LL G+ DGTFL+R S+ G YA S+V G K
Sbjct: 288 LVEDDEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVK 347
Query: 89 HCLVYETERGFGFAEPFNIYPSLGAL 114
HC++ +T G+GFAEP+N+Y SL L
Sbjct: 348 HCVINKTATGYGFAEPYNLYSSLKEL 373
Score = 102 bits (256), Expect = 4e-27
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
+SR + L DGTFL+R ++T G Y L++ G K ++ + +GF++P
Sbjct: 16 DISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL 75
Query: 106 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ S+ L+ HY SL ++N L L YPV
Sbjct: 76 T-FSSVVELINHYRNESLAQYNPKLDVKLLYPV 107
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 103 bits (258), Expect = 1e-29
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
+SR + L DGTFL+R ++T G Y L++ G K ++ + +GF++P
Sbjct: 17 DISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL 76
Query: 106 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ S+ L+ HY SL ++N L L YPV
Sbjct: 77 T-FSSVVELINHYRNESLAQYNPKLDVKLLYPV 108
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 93.5 bits (233), Expect = 1e-25
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 38 LPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYE 94
+ ++ +W +SR+ AE LLS +G+FL+R S + GQ ++S+ G H +
Sbjct: 10 VNSLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINT 69
Query: 95 TERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVF-----APASG 144
T G + + + +L LV H+ D L TTL YP P+SG
Sbjct: 70 TADGKVYVTAESRFSTLAELVHHH-----STVADGLVTTLHYPAPKCNKSGPSSG 119
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide
binding protein; HET: PTR; 1.80A {Mus musculus} SCOP:
d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Length = 100
Score = 91.1 bits (227), Expect = 4e-25
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
+SR QAE LL G+ G F+IR S + G +++S+ +H V +G F
Sbjct: 15 GLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWT-E 73
Query: 107 IYPSLGALVLHYAANSLEEHNDDL 130
+PSL LV +Y S+ +
Sbjct: 74 KFPSLNKLVDYYRTTSISKQKQVF 97
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2;
SH2, phosphoinositide phospholipase C, PLC-gamma-2,
phospholipase C-gamma-2; NMR {Rattus norvegicus}
Length = 124
Score = 90.8 bits (226), Expect = 1e-24
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 41 HDEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETER 97
H+ K W R+SR +AE +L P DG FLIR T YA++ G KHC + R
Sbjct: 16 HESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTDSYAITFRARGKVKHCRINRDGR 75
Query: 98 GFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
F + SL LV +Y E+H K L YPV
Sbjct: 76 HFVLGTSAY-FESLVELVSYY-----EKHALYRKMRLRYPV 110
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 121
Score = 88.1 bits (219), Expect = 1e-23
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 39 PHHDEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVY 93
+ W + RA AE L S G FLIR S + G ++LS++ G KH +
Sbjct: 11 RSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIR 70
Query: 94 ETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
+ G F ++ +L V +Y S D L L P
Sbjct: 71 RLDEGGFFLTRRKVFSTLNEFVNYYTTTS-----DGLCVKLEKPCLKI 113
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 87.3 bits (217), Expect = 2e-23
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
+SR AE LLS +G+FL+R S + GQ ++S+ G H + G + +
Sbjct: 11 PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSES 70
Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ +L LV H++ + D L TTL YP
Sbjct: 71 RFNTLAELVHHHSTVA-----DGLITTLHYPA 97
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain;
HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1
PDB: 1csy_A* 1csz_A*
Length = 254
Score = 88.8 bits (220), Expect = 1e-22
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 39 PHHDEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYE 94
H++ W ++SR ++E ++ + +G FLIR G YAL ++ G H + +
Sbjct: 153 TAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNNGSYALCLLHEGKVLHYRIDK 212
Query: 95 TERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ G + +L LV HY D L L P
Sbjct: 213 DKTGKLSIPEGKKFDTLWQLVEHY-----SYKADGLLRVLTVPC 251
Score = 82.7 bits (204), Expect = 3e-20
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 49 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 104
++R +AE L G DG +L+R S G +ALS+ H + G
Sbjct: 11 NITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAG 70
Query: 105 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
+ S L +++ S D L L P P
Sbjct: 71 GRTHASPADLCHYHSQES-----DGLVCLLKKPFNRP 102
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain,
signaling protein, structural genomics, joint CE
structural genomics, JCSG; 1.50A {Homo sapiens} PDB:
1jwo_A
Length = 98
Score = 84.5 bits (210), Expect = 1e-22
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
++S +A L DG FL+R S G Y L + H V + E
Sbjct: 11 KISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEA-V 69
Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ +L +V HY + + T L P
Sbjct: 70 FFCNLMDMVEHY-----SKDKGAICTKLVRPK 96
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced,
ATP-binding, cell membrane, cytoplasm, membrane,
nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens}
PDB: 3eac_A
Length = 106
Score = 84.2 bits (209), Expect = 2e-22
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
+++R QAE LL G FL+R ST G Y L + G +H + E
Sbjct: 14 KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSIDEE-V 72
Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ +L LV HY D L T L P
Sbjct: 73 YFENLMQLVEHY-----TSDADGLCTRLIKPK 99
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 84.3 bits (209), Expect = 3e-22
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 3/116 (2%)
Query: 32 NRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTTGQ-YALSIVCSGAPKH 89
+ L W +SR AE LL +P G+FLIR S + Y LS + H
Sbjct: 4 GSSGGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCH 63
Query: 90 CLVYETERGFGF-AEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 144
+V + G + SL ALV + +E + L P+SG
Sbjct: 64 FMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPCRQKDSGPSSG 119
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 84.3 bits (209), Expect = 4e-22
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 41 HDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIV------CSGAPKHCL 91
+ W ++R QAE LL +G F++R S G Y +S+ A KH
Sbjct: 13 LEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRHLGSYTISVFMGARRSTEAAIKHYQ 72
Query: 92 VYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVF-----APASG 144
+ + + G + + + S+ L+ ++ + + L T L YPV P+SG
Sbjct: 73 IKKNDSGQWYVAERHAFQSIPELIWYH-----QHNAAGLMTRLRYPVGLMGSSGPSSG 125
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 83.5 bits (207), Expect = 6e-22
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 49 RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
++ +AE LL R DG+FL RPS + G + LS+ +GA H + T +
Sbjct: 13 NITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGG- 71
Query: 106 NIYPSLGALVLHYAANSLEEHNDD-LKTTLAYPV 138
+ +L LV +Y + + + L YP+
Sbjct: 72 EKFATLAELVQYYMEHHGQLKEKNGDVIELKYPL 105
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase;
NMR {Homo sapiens}
Length = 125
Score = 83.9 bits (208), Expect = 6e-22
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 31 LNRTERDLPHHDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCS--- 84
+ E + ++ W M+R+QAE LL +G F++R S+ G+Y +S+
Sbjct: 1 MTEAEDSIEMYE---WYSKHMTRSQAEQLLKQEGKEGGFIVRDSSKAGKYTVSVFAKSTG 57
Query: 85 ---GAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
G +H +V T + + +++ ++ L+ ++ + ++ L + L YPV
Sbjct: 58 DPQGVIRHYVVCSTPQSQYYLAEKHLFSTIPELINYH-----QHNSAGLISRLKYPV 109
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 83.1 bits (206), Expect = 9e-22
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 49 RMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F
Sbjct: 12 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV- 70
Query: 106 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ SL LV ++ + S+ N + V
Sbjct: 71 VKFNSLNELVDYHRSTSVSR-NQQIFLRDIEQV 102
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 86.5 bits (214), Expect = 1e-21
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
Query: 39 PHHDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYE 94
H+ W ++R +AE L + DG FL+RP G YALS++ H L+ +
Sbjct: 154 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQ 213
Query: 95 TERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ G + +L LV + + D L L
Sbjct: 214 DKAGKYCIPEGTKFDTLWQLVEYL-----KLKADGLIYCLKEAC 252
Score = 77.6 bits (191), Expect = 2e-18
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 49 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 104
+SRA+AE L +G DG FL+R G Y LS+V H + G
Sbjct: 12 SISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAG 71
Query: 105 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
+ L Y+ + D L L P P
Sbjct: 72 GKAHCGPAELCEFYSRDP-----DGLPCNLRKPCNRP 103
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 82.3 bits (204), Expect = 1e-21
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER 97
D W + +SR +A+ L G+ G FL+R S+T G Y LS+ + H ++
Sbjct: 16 SDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPN 75
Query: 98 GFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ L AL+ Y + L+ TTL P
Sbjct: 76 RRFKIGD-QEFDHLPALLEFYKIHYLDT------TTLIEPA 109
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 110
Score = 81.9 bits (203), Expect = 3e-21
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 41 HDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCS------GAPKHCL 91
D+ W +SR+Q+E LL +G F++R S+ G Y +S+ G KH
Sbjct: 8 LDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQVGMYTVSLFSKAVNDKKGTVKHYH 67
Query: 92 VYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
V+ + + S+ L+ ++ + ++ + T L +PV
Sbjct: 68 VHTNAENKLYLAENYCFDSIPKLIHYH-----QHNSAGMITRLRHPV 109
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 85.0 bits (210), Expect = 3e-21
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 39 PHHDEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCSGAPKHCLVYET 95
H+ K W ++RAQAE +L P DG FL+R YA+S G KHC V +
Sbjct: 117 NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQE 176
Query: 96 ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ + + SL L+ +Y E+H K L YP+
Sbjct: 177 GQTVML--GNSEFDSLVDLISYY-----EKHPLYRKMKLRYPI 212
Score = 67.2 bits (164), Expect = 1e-14
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 41 HDEKTW------LVRMSRAQAEALL------SGRPDGTFLIRPSTT--GQYALSIVCSGA 86
H + W R R AE LL +G PDG+FL+R S T G Y LS +G
Sbjct: 1 HSSEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGK 60
Query: 87 PKHCLVYETE---RGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
+HC ++ + F ++ SL L+ HY L + +++ + P
Sbjct: 61 VQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQTNA 118
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal
transduction lymphocyte, signaling protein; HET: PTR;
2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 80.8 bits (200), Expect = 5e-21
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 49 RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 100
+++ + EALL G DG FLIR S + G L + ++ + G+
Sbjct: 9 CLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETD 68
Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
P I+P+L LV Y + L L+ P+
Sbjct: 69 AHTPRTIFPNLQELVSKY-----GKPGQGLVVHLSNPI 101
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein
binding/transferase complex; HET: PTR; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 109
Score = 80.7 bits (199), Expect = 7e-21
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 24/108 (22%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
R+SR +A ALL G+ G FL+R S+T G Y LS+ + H ++ +
Sbjct: 6 RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPA 65
Query: 107 I----------------YPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ SL AL+ Y + L+ TTL PV
Sbjct: 66 QPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT------TTLIEPV 107
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 81.8 bits (202), Expect = 7e-21
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 15/118 (12%)
Query: 36 RDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLV 92
+L ++ W ++R +AE L+ PDG+FL+R S+ +LS G H +
Sbjct: 16 EELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRI 75
Query: 93 YETERGFGFAEP--FNIYPSLGALVLHYAANSL----------EEHNDDLKTTLAYPV 138
+ F F E + S+ L+ H +S + L PV
Sbjct: 76 EHSNGRFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATYPVRLTNPV 133
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 79.6 bits (197), Expect = 2e-20
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
++SR +AEALL + +G FL+R STT GQY L+ + SG PKH L+ + E +
Sbjct: 13 KLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHR- 69
Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ S+ L+ ++ N L + + L PV
Sbjct: 70 -FESVSHLISYHMDNHLPIISAGSELCLQQPV 100
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution structure,
backbone dynamics, transferase; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 100
Score = 79.1 bits (196), Expect = 2e-20
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 49 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 104
+SR++A L G G FLIR S Y LS+ + A +H ++ G
Sbjct: 8 CISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNE 67
Query: 105 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ SL LV ++ + LA P
Sbjct: 68 AVSFLSLPELVNYH-----RAQSLSHGLRLAAPC 96
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 78.9 bits (195), Expect = 4e-20
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 49 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG----FG 100
R+SR +++ L+ G DG FL+R S + LS+ KH L+ +E F
Sbjct: 20 RISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFS 79
Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA 142
+ + L LV + + + L L + A
Sbjct: 80 MDDGQTRFTDLLQLVEFH-----QLNRGILPCLLRHCCTRVA 116
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex; HET:
PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A*
1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E*
1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 78.4 bits (194), Expect = 4e-20
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 49 RMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F
Sbjct: 9 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV- 67
Query: 106 NIYPSLGALVLHYAANSLEE 125
+ SL LV ++ + S+
Sbjct: 68 VKFNSLNELVDYHRSTSVSR 87
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation,
binding specificity; HET: PTR MPD; 1.45A {Homo sapiens}
PDB: 1z3k_A 2ci9_A* 2ci8_A*
Length = 102
Score = 78.4 bits (194), Expect = 4e-20
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 49 RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
++R QAE L+ R +G FLIR S + +++S+ SG KH V + + +
Sbjct: 11 NVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQ-- 68
Query: 106 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ ++ LV HY + K L +
Sbjct: 69 RRFHTMDELVEHYKKAPIFTSEHGEKLYLVRAL 101
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 78.1 bits (193), Expect = 6e-20
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 49 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG----FG 100
R+SR ++ ++ G DG FL+R S + + L++ K+ + E F
Sbjct: 11 RISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFS 70
Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ + L LV Y + + L L +
Sbjct: 71 LDDGNTKFSDLIQLVDFY-----QLNKGVLPCKLKHHC 103
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 79.5 bits (196), Expect = 9e-20
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 50 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 107
M+ +A+ L P+GTFLIR S+ +S+ S P + + + F +
Sbjct: 24 MTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIICV 83
Query: 108 ------YPSLGALVLHYAANSLE-------EHNDDLKTTLAYPVF 139
+ S+ L+ +Y + N + L P++
Sbjct: 84 KSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLY 128
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 77.7 bits (192), Expect = 1e-19
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 49 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 100
++R++AE LLS DG+FL+R S + YAL ++ + E
Sbjct: 16 NITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQAS 75
Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ L L+ Y ++ N L T L YPV
Sbjct: 76 EGVSMRFFTKLDQLIEFY-----KKENMGLVTHLQYPV 108
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 77.8 bits (192), Expect = 1e-19
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 49 RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 100
++SR E LL + DG++L+R S + G Y L ++ G V +TE G
Sbjct: 10 KISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETA 69
Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMTV 147
+ + L+ + ++ + + L YPV +S +
Sbjct: 70 PGVHKRYFRKIKNLISAF-----QKPDQGIVIPLQYPVEKKSSARST 111
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 77.0 bits (190), Expect = 1e-19
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 49 RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 100
++SR E LL + DG++L+R S + G Y L ++ G V +TE G
Sbjct: 10 KISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETA 69
Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ + L+ + ++ + + L YPV
Sbjct: 70 PGVHKRYFRKIKNLISAF-----QKPDQGIVIPLQYPV 102
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus musculus}
PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 77.0 bits (190), Expect = 2e-19
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 49 RMSRAQAEALL---SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAE 103
+SR +A L+ G FL+R S T G+ L+ G KH + G +
Sbjct: 15 MLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQ 74
Query: 104 PFNIYPSLGALVLHYAANSL-EEHNDDLKTTLAYPV 138
+ S+ ++ H+ + + E L V
Sbjct: 75 -HLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYV 109
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 78.8 bits (194), Expect = 2e-19
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 37 DLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVY 93
DL + M + AEALL G+P+GTFL+R S +++S H +
Sbjct: 27 DLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIE 86
Query: 94 ETERGFGFAE---PFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ F F P + L+ HY S + L+ P+
Sbjct: 87 QWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFF---EPLLSTPL 131
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 76.6 bits (189), Expect = 4e-19
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 15/113 (13%)
Query: 41 HDEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETE 96
H+ K W ++S+ +A LL +FL+RPS G Y+L + + + T
Sbjct: 13 HEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTP 72
Query: 97 RGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV-----FAPASG 144
F Y S+G ++ HY + L PV P+SG
Sbjct: 73 NN-QFMMGGRYYNSIGDIIDHY-----RKEQIVEGYYLKEPVPMQDQSGPSSG 119
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 76.9 bits (189), Expect = 5e-19
Identities = 27/135 (20%), Positives = 42/135 (31%), Gaps = 11/135 (8%)
Query: 18 PDTSCPPMPSLSA--LNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT 74
DTS S + E + ++ +A LLS P GTFLIR S+
Sbjct: 6 LDTSLRLKTFSSKSEYQLVVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSD 65
Query: 75 --GQYALSIVCSGAPKHCLVYETERGFGF------AEPFNIYPSLGALVLHYAANSLEEH 126
+ LS+ K+ + F +P + + LV HY
Sbjct: 66 QRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQALPG 125
Query: 127 NDDLKTTLAYPVFAP 141
+ + Y
Sbjct: 126 STPKRAYYIYSGGEK 140
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET:
PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A*
1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L*
1cwe_A*
Length = 105
Score = 75.8 bits (187), Expect = 5e-19
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 49 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 99
+SR AE L G G+FLIR S + G ++LS+ KH + + G
Sbjct: 10 NLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGG 69
Query: 100 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ P +P L LV HY S D L T L+ P
Sbjct: 70 FYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 103
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 75.5 bits (186), Expect = 1e-18
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 49 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--- 101
++SR +A+ L+ G DG FL+R S + + LS+ KH + E
Sbjct: 32 KISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMFHT 91
Query: 102 -AEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ + L LV Y + + L L +
Sbjct: 92 LDDGHTRFTDLIQLVEFY-----QLNKGVLPCKLKHYC 124
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 75.1 bits (185), Expect = 1e-18
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
+ R +A+ LL + G FL+R S G+Y LS+ G +H ++ + + F
Sbjct: 23 AIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRFEGTG- 79
Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ ++ L+ H+ L P+
Sbjct: 80 -FSNIPQLIDHHYTTKQVITKKS-GVVLLNPI 109
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction,
peptide complex, complex (proto-oncogene/early protein);
HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Length = 106
Score = 73.1 bits (180), Expect = 7e-18
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 49 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCS-----GAPKHCLVYETERGF 99
++ R AE L G P GTFLIR S T G Y+LSI KH + + + G
Sbjct: 11 KLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGG 70
Query: 100 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ + +L LV HY+ + L + L P
Sbjct: 71 YYITTRAQFETLQQLVQHYSERA-----AGLSSRLVVPS 104
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 73.4 bits (180), Expect = 1e-17
Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 23/139 (16%)
Query: 24 PMPSLSALNRTERDLPHHDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPSTT----GQY 77
P S +++ + W R AE L DG+FLIR S+ Y
Sbjct: 8 PFNS----TFADQEAELLGKP-WYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPY 62
Query: 78 ALSIVCSGAPKHCLVYETERGFGFA-----EPFNIYPSLGALVLHYAANSL----EEHND 128
L + + V E +A + S+ +V + N L ++N
Sbjct: 63 TLVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNT 122
Query: 129 DLKTTLAYPV---FAPASG 144
T L Y V P+SG
Sbjct: 123 KDSTRLKYAVKVSSGPSSG 141
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 72.6 bits (178), Expect = 2e-17
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 27/118 (22%)
Query: 41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAP---------- 87
K W +SR QA ALL + G FLIR S + G Y L++ + P
Sbjct: 17 DTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDP 76
Query: 88 -----KHCLVYETERGF---GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
+H L+ +G G + SL ALV ++ + L L P
Sbjct: 77 VEQLVRHFLIETGPKGVKIKGCPSEP-YFGSLSALVSQHSISP-----ISLPCCLRIP 128
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 72.7 bits (178), Expect = 3e-17
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 50 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF------ 101
++ +A LLS P GTFLIR S+ + LS+ K+ + F
Sbjct: 30 VTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQSDPRS 89
Query: 102 AEPFNIYPSLGALVLHYAANSL 123
+P + + LV HY
Sbjct: 90 TQPVPRFDCVLKLVHHYMPPPG 111
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 74.0 bits (182), Expect = 2e-16
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
+SR AE LLS +G+FL+R S + GQ ++S+ G H + G + +
Sbjct: 111 PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSES 170
Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ +L LV H++ + D L TTL YP
Sbjct: 171 RFNTLAELVHHHSTVA-----DGLITTLHYPA 197
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS
proline, domain swapped dimer, SH transferase; HET: CIT;
2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A
1lum_A 1lun_A 2k79_B 2k7a_B
Length = 118
Score = 68.9 bits (169), Expect = 3e-16
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 41 HDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCSGAP------KHCL 91
+ W +SR +AE LL +G F++R S T G Y +S+ KH
Sbjct: 6 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHYH 65
Query: 92 VYETERGFG--FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ ET + ++ S+ L+ ++ + + L T L YPV
Sbjct: 66 IKETNDSPKRYYVAEKYVFDSIPLLIQYH-----QYNGGGLVTRLRYPV 109
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 67.6 bits (165), Expect = 2e-15
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 51 SRAQAEALL------SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFG-- 100
SR AE LL +G DGTFL+R S T Y LS SG +HC + T
Sbjct: 31 SRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMK 90
Query: 101 -FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ + S+ AL+ HY L + + L PV
Sbjct: 91 YYLTDNLTFNSIYALIQHYREAHLR--CAEFELRLTDPV 127
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
feline sarcoma oncogene, structural genomics; NMR {Homo
sapiens} PDB: 2dcr_A
Length = 114
Score = 67.0 bits (164), Expect = 2e-15
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 107
+ RA+ LL G FL+R S +Y LS++ G P+H ++ + +
Sbjct: 22 AIPRAEVAELL--VHSGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDNLYRLEG--EG 77
Query: 108 YPSLGALVLHYAANSLEEHNDDLKTTLAYPV-FAPASG 144
+PS+ L+ H + L V P+SG
Sbjct: 78 FPSIPLLIDHLLSTQQPLTKKS-GVVLHRAVPSGPSSG 114
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase,
phosphotransferase, phosphorylation; NMR {Mus musculus}
SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 65.8 bits (161), Expect = 5e-15
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 49 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP----KHCLVYETERGFG 100
+SR AE L G+FLIR S + G ++LS+ KH + + G
Sbjct: 18 TISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGY 77
Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ P +P+L ALV HY+ D L L P
Sbjct: 78 YISPRITFPTLQALVQHYSKKG-----DGLCQKLTLPC 110
>3maz_A Signal-transducing adaptor protein 1; modular domain,
phosphotyrosine, specificity, cytoplasm, phosphoprotein,
SH2 domain, signaling protein; HET: PTR; 1.90A {Homo
sapiens}
Length = 125
Score = 65.6 bits (160), Expect = 7e-15
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 49 RMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCS---GAPKHCLVYETERGFGFA- 102
+SR +A +L P G ++RP + Y+++I KH V + +
Sbjct: 21 TVSRKEATEMLQKNPSLGNMILRPGSDSRNYSITIRQEIDIPRIKHYKVMSVGQNYTIEL 80
Query: 103 EPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
E P+L +++ ++ +
Sbjct: 81 EKPVTLPNLFSVIDYF-----VKETRGNLRPFIAS 110
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 65.7 bits (160), Expect = 1e-13
Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 49 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 104
+SRA+AE L +G DG FL+R G Y LS+V H + G
Sbjct: 14 SISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAG 73
Query: 105 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ L Y D L L P
Sbjct: 74 GKAHCGPAELCEFY-----SRDPDGLPCNLRKPC 102
Score = 60.0 bits (145), Expect = 1e-11
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 49 RMSRAQAEALL--SGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
++R +AE L + DG FL+RP G YALS++ H L+ + + G
Sbjct: 167 SLTREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEG 226
Query: 106 NIYPSLGALVLHYAANS 122
+ +L LV + +
Sbjct: 227 TKFDTLWQLVEYLKLKA 243
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 65.4 bits (160), Expect = 1e-13
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
+++R QAE LL G FL+R ST G Y L + C G +H + E
Sbjct: 86 KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVY 145
Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ +L LV HY ++ D L T L P
Sbjct: 146 -FENLMQLVEHYTTDA-----DGLCTRLIKPK 171
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 65.0 bits (157), Expect = 2e-13
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER 97
D W + +SR +A+ L G+ G FL+R S+T G Y LS+ + H ++
Sbjct: 9 SDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPN 68
Query: 98 GFGFAEPFNIYPSLGALVLHYAAN 121
F + L AL+ Y +
Sbjct: 69 RR-FKIGDQEFDHLPALLEFYKIH 91
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 63.8 bits (154), Expect = 2e-13
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER 97
+ +W R+SR +A ALL G+ G FL+R S+T G Y LS+ + H ++ +
Sbjct: 10 EERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGP 69
Query: 98 GFGFAEPFNIYPS 110
P
Sbjct: 70 RPPVPPSPAQPPP 82
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 62.3 bits (152), Expect = 2e-12
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 107
+ RA+ LL G FL+R S +Y LS++ G P+H ++ + +
Sbjct: 19 AIPRAEVAELL--VHSGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDNLYRLEGEG-- 74
Query: 108 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
+PS+ L+ H + L +
Sbjct: 75 FPSIPLLIDHLLSTQ-----QPLTKKSGVVLHRA 103
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 59.5 bits (144), Expect = 2e-11
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 41 HDEKTWLVRMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCL 91
E+ + +++R ++E LL + P GTFL+R S T G Y LS+ KH
Sbjct: 146 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYK 205
Query: 92 VYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ + + G + + SL LV +Y+ ++ D L L
Sbjct: 206 IRKLDSGGFYITSRTQFNSLQQLVAYYSKHA-----DGLCHRLTTVC 247
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 58.8 bits (141), Expect = 2e-11
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER 97
+ +W R+SR +A ALL G+ G FL+R S+T G Y LS+ + H ++ +
Sbjct: 8 EERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGP 67
Query: 98 GFGFAE 103
Sbjct: 68 RPPVPP 73
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 57.8 bits (139), Expect = 3e-11
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 39 PHHDEKTWLVRMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYET 95
+ ++ RA+AE +LS R DG FLIR S + G ++LS+ +H V
Sbjct: 54 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD 113
Query: 96 ERGFGFAEPFNIYPSLGALVLHYAANSL 123
G + + SL LV ++ + S+
Sbjct: 114 GAGK-YFLWVVKFNSLNELVDYHRSTSV 140
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 58.6 bits (142), Expect = 4e-11
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 49 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 99
+++R ++E LL + P GTFL+R S T G Y LS+ KH + + + G
Sbjct: 71 KITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG 130
Query: 100 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS 143
+ + SL LV +Y+ ++ D L L
Sbjct: 131 FYITSRTQFNSLQQLVAYYSKHA-----DGLCHRLTTVCPTSKP 169
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 58.2 bits (141), Expect = 5e-11
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 49 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSI-----VCSGAPKHCLVYETERGF 99
+SR AE L G G+F+IR S T G Y+LS+ KH + + G
Sbjct: 76 GISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGG 135
Query: 100 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
+ P + + +L LV HY + D L L+ P
Sbjct: 136 FYISPRSTFSTLQELVDHYKKGN-----DGLCQKLSVPC 169
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 55.8 bits (134), Expect = 1e-10
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 14/121 (11%)
Query: 27 SLSALNRTERDLPHHDEKTWLVRMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIV 82
N + E + +SR AE L G G+FLIR S + G ++LS+
Sbjct: 58 GFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVR 117
Query: 83 CSGAP-----KHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
KH + + G + P +P L LV HY +D L T L+ P
Sbjct: 118 DFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHY-----TNASDGLCTRLSRP 172
Query: 138 V 138
Sbjct: 173 C 173
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 51.3 bits (122), Expect = 4e-09
Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 41 HDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPSTT-GQYALSIVCS---GAPKHCLVY 93
+ +++ MSR +A LL GTFL+R S+ G+Y+L++ + A H L+
Sbjct: 9 FEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIE 68
Query: 94 ETERGF------GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA 142
E G +P + AL+ H+ L E +
Sbjct: 69 RGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVG 123
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine
binding domain, protein tyrosine kinase, signal
transduction, structural genomics; NMR {Homo sapiens}
Length = 118
Score = 48.2 bits (114), Expect = 3e-08
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 46 WLVRMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAP----KHCLVYETERG 98
+++SR +A+ LL P G L+RPS +++ +H V
Sbjct: 24 CFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPK 83
Query: 99 F--GFAEPFNIYPSLGALVLHYAANS 122
+ +PF+ SL A+V ++ +++
Sbjct: 84 YVIDVEQPFSC-TSLDAVVNYFVSHT 108
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 49.8 bits (118), Expect = 4e-08
Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Query: 41 HDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPSTT-GQYALSIVCSGAP---KHCLVY 93
+ +++ MSR +A LL GTFL+R S+ G+Y+L++ + H L+
Sbjct: 38 FEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIE 97
Query: 94 ETERGFGFAEP--FNI----YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA 142
E I +P + AL+ H+ L E +
Sbjct: 98 RGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVG 152
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 126
Score = 47.1 bits (111), Expect = 8e-08
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 54 QAEALLSGRPDGTFLIRPSTT--GQYALSIVCS-GAPKHCLVYETERGFGFAEPFNIYPS 110
+A + DG + IR S+T G+ + + ++ ++E + F ++ S
Sbjct: 34 KATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFEKDSKFYLEGEV-LFVS 92
Query: 111 LGALVLHYAANSLEEHNDDLKTTLAYP---VFAPASG 144
+G++V HY + L H L +P P+SG
Sbjct: 93 VGSMVEHYHTHVLPSHQS---LLLRHPYGYTSGPSSG 126
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 47.7 bits (112), Expect = 3e-07
Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 17/120 (14%)
Query: 26 PSLSALNRTERDLPHHDEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVC 83
S+ L E M R + L + GTF+IR S GQ+ ++ +
Sbjct: 334 KSMQTLRYQRHISTLWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIG 393
Query: 84 ---SGAPKHCLVYETERGFG---FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
KH LV + F + + + +L + D +
Sbjct: 394 VEMPARIKHYLVQPNDTAAAKKTFPDFLSEHSQF---------VNLLQWTKDTNGAPRFL 444
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES;
1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A
2l3t_A 3gxw_A 3gxx_A
Length = 197
Score = 44.9 bits (106), Expect = 1e-06
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 50 MSRAQAEALLSGRPDGTFLIRPSTTGQYALSI---VCSGAPKHCLVYETER--GFGFAEP 104
+ QAE L + G F+IR S+ G L+I + +H + E E+ +
Sbjct: 14 FNGKQAEDYLRSKERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKENPLALGKV 73
Query: 105 FNI----YPSLGALVLHYAAN 121
+ Y L +++ Y N
Sbjct: 74 LVVEGQRYHDLDQIIVEYLQN 94
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 43.3 bits (102), Expect = 7e-06
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 49 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AE 103
+S AE LL GR G+FL RPS G ++LS+ H + + + E
Sbjct: 8 DLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGE 67
Query: 104 PFNIYPSLGALVLHYAAN--SLEEHNDDLKTTLAYPVFAPA 142
F +L LV +Y L++ + + L YP+
Sbjct: 68 KF---ATLTELVEYYTQQQGVLQDRDGTI-IHLKYPLNCSD 104
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 43.3 bits (102), Expect = 7e-06
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 49 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AE 103
++ +AE LL R DG+FL RPS + G LS+ +GA H + T + E
Sbjct: 10 NITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGGE 69
Query: 104 PFNIYPSLGALVLHY--AANSLEEHNDDLKTTLAYPVFAP 141
F +L LV +Y L+E N D+ L YP+
Sbjct: 70 KF---ATLAELVQYYMEHHGQLKEKNGDV-IELKYPLNCA 105
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 43.0 bits (101), Expect = 1e-05
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 49 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AE 103
+S AE LL GR G+FL RPS G ++LS+ H + + + E
Sbjct: 8 DLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGE 67
Query: 104 PFNIYPSLGALVLHYAAN--SLEEHNDDLKTTLAYPVFAPA 142
F +L LV +Y L++ + L YP+
Sbjct: 68 KF---ATLTELVEYYTQQQGVLQDRDGT-IIHLKYPLNCSD 104
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A
{Antonospora locustae}
Length = 178
Score = 39.5 bits (92), Expect = 1e-04
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 50 MSRAQAEALLSGRPDGTFLIRPSTTGQY-ALSI-VCSGAPKHCLVYETERGFGFAEPFNI 107
+ ++E L FLIR + Y L I S H + E + +
Sbjct: 20 FNVTESENYLRSST-DDFLIRKGSRHGYCVLVIKFASDVFVHMKIEEHSEHYTCSN--KH 76
Query: 108 YPSLGALVLHYAANSLEEHNDDLKT 132
+ + ++ Y + + +K
Sbjct: 77 FEDIDEVISVYVRP-ILRNLKSIKA 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 6e-04
Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 47/134 (35%)
Query: 17 GPDT---SCPPMPSLSALNRTERDL---PHHDEKTWLVRMSRAQAEALLSGRPDGTFLIR 70
G S PP SL LN T R D Q+ S R +
Sbjct: 373 GAKNLVVSGPPQ-SLYGLNLTLRKAKAPSGLD-----------QSRIPFSER-------K 413
Query: 71 PSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDL 130
+ ++ L + +P H + P+ + N++ + D+
Sbjct: 414 LKFSNRF-LPV---ASPFHSHLLV--------------PASDLINKDLVKNNVSFNAKDI 455
Query: 131 KTTLAYPVFAPASG 144
+ PV+ G
Sbjct: 456 QI----PVYDTFDG 465
Score = 36.2 bits (83), Expect = 0.002
Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 53/138 (38%)
Query: 38 LPHHDEKTWLVRMSRAQA--EAL-LSGRPDGTF----LIRPSTTGQ---YALSIVCSGAP 87
L ++ T + + A ++ RP L R G A+
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-------- 159
Query: 88 KHCLVYETERGFG--------FAE---PFNIYPSLGALVLHYAANSLEE----------- 125
FG F E + Y L ++ ++A +L E
Sbjct: 160 -----------FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 126 --HNDDLKTTLAYPVFAP 141
++ L P P
Sbjct: 209 FTQGLNILEWLENPSNTP 226
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 37.5 bits (87), Expect = 8e-04
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 50 MSRAQAEALLSGRPDGTFLIRPSTTGQYALSI---VCSGAPKHCLVYETERGFGFA 102
+ QAE L + G F+IR S+ G L I + +H + E E+ A
Sbjct: 1030 FNGRQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENPLA 1085
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 37.2 bits (86), Expect = 0.001
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 24 PMPSLSALNRTERDLPHHDEKTWLVRMSRAQAEALLSGRPDGTFLIR--PSTTGQYALSI 81
P P + P + + + +SR A+ LL +G++LIR G Y L++
Sbjct: 32 PHPRRITCTCEVENRPKYYGREFHGMISREAADQLLI-VAEGSYLIRESQRQPGTYTLAL 90
Query: 82 VCSGAPKH 89
++
Sbjct: 91 RFGSQTRN 98
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 36.4 bits (83), Expect = 0.002
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 50 MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVY 93
+S+ + A+LS +P GTFL+R S + G + V +
Sbjct: 463 ISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQ 509
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 36.0 bits (82), Expect = 0.003
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 50 MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
+S+ + ALL + GTFL+R S + G + V E F EP+
Sbjct: 447 ISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQ------NGGEPDFHAVEPYT 500
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 35.6 bits (81), Expect = 0.004
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 50 MSRAQAEALLSGRPDGTFLIRPSTTGQY-ALSIVCSGAPKHCLVYETERGFGFAEPF 105
+S+ + ALL + GTFL+R S + + A++ ++ E F EP+
Sbjct: 582 ISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQN----GGEPDFHAVEPY 634
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 35.6 bits (81), Expect = 0.004
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 50 MSRAQAEALLSGRPDGTFLIRPSTTGQYALSI 81
+++ QA LL +PDGTFL+R S + ++I
Sbjct: 471 VNKQQAHDLLINKPDGTFLLRFSDSEIGGITI 502
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.021
Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 26/117 (22%)
Query: 1 MLQINKVIFYSASTSGGPDTSCPPMPSLSALNRTERD----LPHH---DEKTWLVRMSRA 53
+L+IN S + S + +R D ++ + +R
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---- 141
Query: 54 QAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAE--PFNIY 108
+ALL RP LI G G+ K + + + F I+
Sbjct: 142 --QALLELRPAKNVLID----GV-------LGSGKTWVALDVCLSYKVQCKMDFKIF 185
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 26.9 bits (59), Expect = 2.4
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 13/78 (16%)
Query: 25 MPSLSALNRTERDLPHHDEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCS 84
M A + L KT+ VR+ + + F G+ +VC
Sbjct: 2 MAGAIASRMSFSSLKRKQPKTFTVRIV------TMDA--EMEFNCEMKWKGKDLFDLVC- 52
Query: 85 GAPKHCLVYETERGFGFA 102
+ + ET FG
Sbjct: 53 ---RTLGLRETW-FFGLQ 66
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer
membrane; HET: UNL; 2.30A {Escherichia coli}
Length = 446
Score = 26.9 bits (60), Expect = 3.3
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 10/62 (16%)
Query: 29 SALNRTERDLPHHDEKTWLVRMSRAQAE---ALLSGRPDGTFLIRPSTTGQYALSIVCSG 85
+ T D+ + AQA LL G + + + +G
Sbjct: 202 GVIESTRSDIA-------KRQGELAQANNALQLLLGSYGKLPQAQTVNSDSLQSVKLPAG 254
Query: 86 AP 87
Sbjct: 255 LS 256
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin
binding protein, cytoskeleton, complex; 2.32A {Homo
sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Length = 97
Score = 25.0 bits (55), Expect = 6.1
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 62 RPDGTFLI--RPSTTGQYALSIVCSGAP 87
DGT + P G Y++ + +
Sbjct: 56 NQDGTCSVSYLPVLPGDYSILVKYNEQH 83
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 93
Score = 24.7 bits (54), Expect = 7.5
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 64 DGTFLI--RPSTTGQYALSIVCSGAP 87
DGT + P+ G + + I G
Sbjct: 45 DGTITVRYAPTEKGLHQMGIKYDGNH 70
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation,
immun like, cytoskeleton, actin-binding, cell junction,
shape; HET: CME; 2.44A {Homo sapiens}
Length = 100
Score = 24.7 bits (54), Expect = 7.6
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 62 RPDGTFLI--RPSTTGQYALSIVCSGAP 87
DGT I P G Y ++I G P
Sbjct: 60 HGDGTHTITYIPLCPGAYTVTIKYGGQP 87
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel,
antibiotic RES lipoprotein, palmitate, transmemb
transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Length = 474
Score = 25.4 bits (56), Expect = 8.1
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 48 VRMSRAQAE---ALLSGRPDGTFLIRPSTTGQYALSIVCSGAP 87
AQ + LL G L + Q L+ V +G P
Sbjct: 223 YTRLVAQDQNALVLLLGSGIPANLPQGLGLDQTLLTEVPAGLP 265
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 113
Score = 24.7 bits (54), Expect = 8.6
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 62 RPDGTFLI--RPSTTGQYALSIVCSGAP 87
DGT+ + P T G Y L++ G
Sbjct: 63 NKDGTYAVTYVPLTAGMYTLTMKYGGEL 90
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 115
Score = 24.8 bits (54), Expect = 8.7
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 62 RPDGTFLI--RPSTTGQYALSIVCSGAP 87
DGT+ + P +G+Y ++I G
Sbjct: 65 NGDGTYTVSYLPDMSGRYTITIKYGGDE 92
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 124
Score = 24.8 bits (54), Expect = 9.2
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 62 RPDGTFLI--RPSTTGQYALSIVCSGAP 87
DGT+ I + G Y + + G
Sbjct: 64 NEDGTYDIFYTAAKPGTYVIYVRFGGVD 91
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate,
citrulline, ST genomics, structural genomics
consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Length = 413
Score = 25.2 bits (56), Expect = 9.4
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 5/23 (21%)
Query: 1 MLQINKVIF-YSASTSGGPDTSC 22
M V+ YS GG DTSC
Sbjct: 2 MSSKGSVVLAYS----GGLDTSC 20
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 105
Score = 24.3 bits (53), Expect = 9.8
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 54 QAEALLSGRPDGTFLIR--PSTTGQYALSIVCSGAP 87
+AE +G+ + G Y +SI +
Sbjct: 53 KAEITFDDHKNGSCGVSYIAQEPGNYEVSIKFNDEH 88
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.404
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,220,143
Number of extensions: 120754
Number of successful extensions: 591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 422
Number of HSP's successfully gapped: 108
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)