BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8555
(127 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GLK9|GET4B_XENLA Golgi to ER traffic protein 4 homolog B OS=Xenopus laevis GN=get4-b
PE=2 SV=1
Length = 325
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 70 VVLQYLCLQNKVTANQTFENYTTRHPNIQTRGPPYYLPLLNFIWFLLKVIETYTVTL 126
VLQ+LCL+NK +A+ F YT +HP+I+ RGPP+ PLLNFIWFLL +E +T+
Sbjct: 197 AVLQFLCLKNKTSASVVFTTYTQKHPSIE-RGPPFVQPLLNFIWFLLLAVEGGKLTV 252
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 1 GKLVAFNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAA 44
GKL F LC+QYQ S+KRDP Y++YL++IG +FFG+ P + ++
Sbjct: 248 GKLTVFTVLCEQYQPSLKRDPMYNEYLDRIGQLFFGLPPKQSSS 291
>sp|Q6NRL4|GET4A_XENLA Golgi to ER traffic protein 4 homolog A OS=Xenopus laevis GN=get4-a
PE=2 SV=1
Length = 325
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 70 VVLQYLCLQNKVTANQTFENYTTRHPNIQTRGPPYYLPLLNFIWFLLKVIETYTVTL 126
VLQ+LCL+NK +A+ F YT +HP+I+ RGPP+ PLLNFIWFLL +E +T+
Sbjct: 197 AVLQFLCLKNKTSASVVFTTYTQKHPSIE-RGPPFVQPLLNFIWFLLLAVEGGKLTV 252
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 1 GKLVAFNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAA 44
GKL F LC+QYQ S+KRDP Y++YL++IG +FFG+ P + ++
Sbjct: 248 GKLTVFTVLCEQYQPSLKRDPMYNEYLDRIGQLFFGLPPKQSSS 291
>sp|A4QNE0|GET4_XENTR Golgi to ER traffic protein 4 homolog OS=Xenopus tropicalis GN=get4
PE=2 SV=1
Length = 325
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 70 VVLQYLCLQNKVTANQTFENYTTRHPNIQTRGPPYYLPLLNFIWFLLKVIETYTVTL 126
VLQ+LCL+NK +A+ F YT +HP+I+ RGPP+ PLLNFIWFLL +E +T+
Sbjct: 197 AVLQFLCLKNKTSASVVFTTYTQKHPSIE-RGPPFVQPLLNFIWFLLLAVEGGKLTV 252
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 1 GKLVAFNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAA 44
GKL F LC+QYQ S+KRDP Y++YL++IG +FFG+ P + ++
Sbjct: 248 GKLTVFTVLCEQYQPSLKRDPMYNEYLDRIGQLFFGVPPKQSSS 291
>sp|A1Z3X3|GET4_ORYLA Golgi to ER traffic protein 4 homolog OS=Oryzias latipes GN=get4
PE=2 SV=1
Length = 323
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 70 VVLQYLCLQNKVTANQTFENYTTRHPNIQTRGPPYYLPLLNFIWFLLKVIETYTVTL 126
VLQ+LCL+NK +A+ F YT +HP+IQ +GPP+ PLLNFIWFLL ++ +T+
Sbjct: 194 AVLQFLCLKNKSSASVVFSTYTEKHPSIQ-KGPPFVQPLLNFIWFLLLAVDGGKLTV 249
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 1 GKLVAFNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPAR 41
GKL F LC+QYQ S+KRDP Y++YL++IG +FFG+ P +
Sbjct: 245 GKLTVFTVLCEQYQPSLKRDPMYNEYLDRIGQLFFGVPPKQ 285
>sp|Q5ZKG8|GET4_CHICK Golgi to ER traffic protein 4 homolog OS=Gallus gallus GN=GET4 PE=2
SV=1
Length = 312
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 70 VVLQYLCLQNKVTANQTFENYTTRHPNIQTRGPPYYLPLLNFIWFLLKVIETYTVTL 126
VLQ+LCL+NK +A+ F YT +HP+I+ +GPP+ PLLNFIWFLL ++ +T+
Sbjct: 184 AVLQFLCLKNKTSASVVFTTYTQKHPSIE-KGPPFVQPLLNFIWFLLLAVDGGKLTV 239
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 1 GKLVAFNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAA 44
GKL F LC+QYQ S+KRDP Y++YL++IG +FFG+ P + ++
Sbjct: 235 GKLTVFTVLCEQYQPSLKRDPMYNEYLDRIGQLFFGVPPKQTSS 278
>sp|B5KFI0|GET4_TAEGU Golgi to ER traffic protein 4 homolog OS=Taeniopygia guttata
GN=GET4 PE=2 SV=1
Length = 328
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 70 VVLQYLCLQNKVTANQTFENYTTRHPNIQTRGPPYYLPLLNFIWFLLKVIETYTVTL 126
VLQ+LCL+NK +A+ F YT +HP+I+ +GPP+ PLLNFIWFLL ++ +T+
Sbjct: 200 AVLQFLCLKNKTSASVVFTTYTQKHPSIE-KGPPFVQPLLNFIWFLLLAVDGGKLTV 255
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 1 GKLVAFNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAA 44
GKL F LC+QYQ S+KRDP Y++YL++IG +FFG+ P + ++
Sbjct: 251 GKLTVFTVLCEQYQPSLKRDPMYNEYLDRIGQLFFGVPPKQTSS 294
>sp|Q0P5I8|GET4_BOVIN Golgi to ER traffic protein 4 homolog OS=Bos taurus GN=GET4 PE=2
SV=1
Length = 325
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 70 VVLQYLCLQNKVTANQTFENYTTRHPNIQTRGPPYYLPLLNFIWFLLKVIETYTVTL 126
VLQ+LCL+NK +A+ F YT +HP+I+ GPP+ PLLNFIWFLL ++ +T+
Sbjct: 198 AVLQFLCLKNKSSASVVFTTYTQKHPSIEG-GPPFVQPLLNFIWFLLLAVDGGKLTV 253
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 32/41 (78%)
Query: 1 GKLVAFNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPAR 41
GKL F LC+QYQ S++RDP Y++YL++IG +FFG+ P +
Sbjct: 249 GKLTVFTVLCEQYQPSLRRDPMYNEYLDRIGQLFFGVPPKQ 289
>sp|Q7L5D6|GET4_HUMAN Golgi to ER traffic protein 4 homolog OS=Homo sapiens GN=GET4 PE=1
SV=1
Length = 327
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 70 VVLQYLCLQNKVTANQTFENYTTRHPNIQTRGPPYYLPLLNFIWFLLKVIETYTVTL 126
VLQ+LCL+NK +A+ F YT +HP+I+ GPP+ PLLNFIWFLL ++ +T+
Sbjct: 199 AVLQFLCLKNKSSASVVFTTYTQKHPSIED-GPPFVEPLLNFIWFLLLAVDGGKLTV 254
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 1 GKLVAFNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFG 51
GKL F LC+QYQ S++RDP Y++YL++IG +FFG+ P + + GGL G
Sbjct: 250 GKLTVFTVLCEQYQPSLRRDPMYNEYLDRIGQLFFGV-PPKQTSSYGGLLG 299
>sp|A0MT11|GET4_SALSA Golgi to ER traffic protein 4 homolog OS=Salmo salar GN=get4 PE=2
SV=1
Length = 322
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 70 VVLQYLCLQNKVTANQTFENYTTRHPNIQTRGPPYYLPLLNFIWFLLKVIETYTVTL 126
VLQ+LCL+NK +A+ F YT +HP+I+ + PP+ PLLNFIWFLL ++ +T+
Sbjct: 194 AVLQFLCLKNKNSASVVFSTYTQKHPSIE-KDPPFVQPLLNFIWFLLLAVDGGKLTV 249
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 1 GKLVAFNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAA 44
GKL F LC+QYQ S+KRDP Y++YL++IG +FFG+ P + ++
Sbjct: 245 GKLTVFTVLCEQYQPSLKRDPMYNEYLDRIGQLFFGVPPKQSSS 288
>sp|A4GWN3|GET4_TAKRU Golgi to ER traffic protein 4 homolog OS=Takifugu rubripes GN=get4
PE=2 SV=1
Length = 323
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 70 VVLQYLCLQNKVTANQTFENYTTRHPNIQTRGPPYYLPLLNFIWFLLKVIETYTVTL 126
VLQ+LCL+NK A+ YT +HP+I+ +GPP+ PLLNFIWFLL ++ +T+
Sbjct: 194 AVLQFLCLKNKNGASVVXSTYTEKHPSIE-KGPPFVQPLLNFIWFLLLAVDGGKLTV 249
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 32/41 (78%)
Query: 1 GKLVAFNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPAR 41
GKL F LC+QY+ S+KRDP Y++YL++IG +FFG+ P +
Sbjct: 245 GKLTVFTVLCEQYKPSLKRDPMYNEYLDRIGQLFFGVPPKQ 285
>sp|Q9D1H7|GET4_MOUSE Golgi to ER traffic protein 4 homolog OS=Mus musculus GN=Get4 PE=2
SV=2
Length = 327
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 70 VVLQYLCLQNKVTANQTFENYTTRHPNIQTRGPPYYLPLLNFIWFLLKVIE 120
VLQ+LCL+NK +A F YT +HP+I+ GPP+ PLLNFIWFLL ++
Sbjct: 199 AVLQFLCLKNKNSALVVFTTYTQKHPSIED-GPPFVQPLLNFIWFLLLAVD 248
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 32/41 (78%)
Query: 1 GKLVAFNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPAR 41
GKL F LC+QYQ S++RDP Y++YL++IG +FFG+ P +
Sbjct: 250 GKLAVFTVLCEQYQPSLRRDPMYNEYLDRIGQLFFGVPPKQ 290
>sp|Q9VN19|GET4_DROME Golgi to ER traffic protein 4 homolog OS=Drosophila melanogaster
GN=CG9853 PE=2 SV=1
Length = 339
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 70 VVLQYLCLQNKVTANQTFENYTTRHPNIQTRGPPYYLPLLNFIWFLLKVIETYTVT 125
VLQ L L+++ TA TF YT H + PY PL+NF++FL ++I+ V
Sbjct: 202 AVLQQLSLKDRKTAEDTFTEYTRYHAKLLKHEFPYKEPLVNFLYFLFRLIDAKRVA 257
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 2 KLVAFNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQP--ARPAAPA-GGLFG 51
++ F L + Y S+KRD ++ Y+ KIG ++F P A P GG+FG
Sbjct: 255 RVAGFRALRKLYDPSLKRDTSFLKYVAKIGVLYFDEHPEAAHSGPPGLGGMFG 307
>sp|Q54TH4|GET4_DICDI Golgi to ER traffic protein 4 homolog OS=Dictyostelium discoideum
GN=DDB_G0281815 PE=3 SV=1
Length = 309
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 6 FNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFG 51
FN L Q+Y+ S+KRDP + +L++I +IF+ + P GGL G
Sbjct: 229 FNLLRQKYERSLKRDPQFKKFLDQIANIFYNV----PIQSGGGLSG 270
>sp|B4S3Q7|RECO_PROA2 DNA repair protein RecO OS=Prosthecochloris aestuarii (strain DSM
271 / SK 413) GN=recO PE=3 SV=1
Length = 264
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 12 QYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVV 71
+++ K P ++++ KI I G++ P G+F T + L I N +V
Sbjct: 14 KFRDQSKICPVFTEHFGKISVILKGVR--NPKNKLSGVFSTGNMVELVIYKKQNRDLHLV 71
Query: 72 LQYLCLQNKVTANQTFENYTTRHPNIQT 99
L LQ+ ++A E +TT + I+T
Sbjct: 72 SDALLLQSPMSARPDMERFTTIYQLIET 99
>sp|Q89AQ5|FTSZ_BUCBP Cell division protein FtsZ OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=ftsZ PE=3 SV=1
Length = 385
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 59 SIDIDLNGSW--TVVLQYLCLQNKVTANQTFENYTTRH-----PNIQTRGPPYY 105
S+D ++N S T+V + N + N EN+T++H N+QT+ P Y
Sbjct: 297 SLDTNMNDSLRVTIVATGIGTYNDIKHNNNTENHTSKHVPKNLENLQTKESPKY 350
>sp|Q7YXU4|CPNA_DICDI Copine-A OS=Dictyostelium discoideum GN=cpnA PE=2 SV=1
Length = 600
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 23 YSDYLNKIGHIF--FGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNK 80
Y++ + +G++ + P P GG+ + +++ + LN S T LC
Sbjct: 317 YANAICSVGNVIVPYTTTPLIPVYGFGGIMPGQSEVSHCFPMTLNASNT-----LC---- 367
Query: 81 VTANQTFENYTTRHPNIQTRGPPYYLPLLN 110
N + Y IQ GP Y+ PL+N
Sbjct: 368 CGVNGVLDCYYDNISKIQLHGPTYFAPLIN 397
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,016,688
Number of Sequences: 539616
Number of extensions: 1905964
Number of successful extensions: 3075
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3039
Number of HSP's gapped (non-prelim): 28
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)