Query psy8555
Match_columns 127
No_of_seqs 149 out of 161
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 21:52:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lpz_A GET4 (YOR164C homolog); 99.7 3.5E-18 1.2E-22 142.4 6.2 79 46-125 170-261 (336)
2 2wpv_A GET4, UPF0363 protein Y 99.7 6.4E-19 2.2E-23 145.1 0.9 79 46-125 168-261 (312)
3 3lpz_A GET4 (YOR164C homolog); 99.7 2.6E-17 8.8E-22 137.2 5.3 56 2-57 259-315 (336)
4 2wpv_A GET4, UPF0363 protein Y 99.5 1.1E-14 3.8E-19 119.9 3.1 52 2-56 259-310 (312)
5 2kck_A TPR repeat; tetratricop 81.5 3.8 0.00013 24.3 5.2 84 7-96 23-109 (112)
6 4gco_A Protein STI-1; structur 73.3 8.4 0.00029 25.2 5.5 85 6-96 29-113 (126)
7 2lni_A Stress-induced-phosphop 73.0 13 0.00045 22.6 6.1 82 8-95 34-115 (133)
8 3upv_A Heat shock protein STI1 71.5 5.9 0.0002 24.9 4.2 88 6-99 20-107 (126)
9 1elw_A TPR1-domain of HOP; HOP 70.4 9.7 0.00033 22.5 4.9 83 7-95 21-103 (118)
10 2xev_A YBGF; tetratricopeptide 68.8 12 0.0004 23.2 5.2 80 10-95 22-107 (129)
11 2pl2_A Hypothetical conserved 68.2 10 0.00036 26.7 5.4 83 6-95 100-182 (217)
12 1na0_A Designed protein CTPR3; 68.2 15 0.00052 21.8 5.5 80 10-95 29-108 (125)
13 3vtx_A MAMA; tetratricopeptide 67.5 11 0.00037 25.1 5.1 33 7-39 22-54 (184)
14 2dba_A Smooth muscle cell asso 67.3 20 0.00067 22.3 7.0 83 7-95 45-130 (148)
15 2vyi_A SGTA protein; chaperone 65.9 18 0.00062 21.6 5.5 81 9-95 31-111 (131)
16 2xcb_A PCRH, regulatory protei 65.9 14 0.00049 24.0 5.3 103 7-120 35-137 (142)
17 3sz7_A HSC70 cochaperone (SGT) 64.5 11 0.00036 25.1 4.5 84 7-96 28-111 (164)
18 2vgx_A Chaperone SYCD; alterna 61.8 26 0.00088 23.4 6.2 102 9-121 40-141 (148)
19 3as5_A MAMA; tetratricopeptide 60.2 30 0.001 22.0 6.3 81 9-95 27-107 (186)
20 3eyy_A Putative iron uptake re 58.9 14 0.00049 25.9 4.6 31 69-99 22-52 (145)
21 4gcn_A Protein STI-1; structur 58.2 11 0.00036 24.6 3.6 87 6-95 24-114 (127)
22 3k9i_A BH0479 protein; putativ 57.4 18 0.00063 22.6 4.5 80 10-95 10-92 (117)
23 3qky_A Outer membrane assembly 57.0 26 0.00087 24.9 5.7 86 7-96 32-129 (261)
24 1a17_A Serine/threonine protei 55.7 32 0.0011 21.8 5.5 81 9-95 32-112 (166)
25 4ga2_A E3 SUMO-protein ligase 55.6 29 0.00099 23.0 5.6 83 7-95 48-131 (150)
26 3urz_A Uncharacterized protein 55.2 27 0.00093 24.3 5.6 83 8-96 22-120 (208)
27 2e2e_A Formate-dependent nitri 54.8 20 0.00067 23.8 4.5 25 13-37 33-57 (177)
28 1hxi_A PEX5, peroxisome target 54.3 15 0.00051 23.7 3.8 84 7-96 34-117 (121)
29 2q7f_A YRRB protein; TPR, prot 51.9 46 0.0016 22.4 6.2 79 11-95 146-224 (243)
30 3q49_B STIP1 homology and U bo 50.2 20 0.00068 22.3 3.8 84 7-96 26-109 (137)
31 2kat_A Uncharacterized protein 49.4 22 0.00076 21.9 3.9 81 10-96 5-85 (115)
32 1mzb_A Ferric uptake regulatio 49.0 30 0.001 23.7 4.8 31 69-99 21-53 (136)
33 3mjh_B Early endosome antigen 47.5 9.4 0.00032 21.6 1.6 22 75-96 10-31 (34)
34 3mwm_A ZUR, putative metal upt 45.9 32 0.0011 23.8 4.7 31 69-99 17-48 (139)
35 3gyz_A Chaperone protein IPGC; 45.5 44 0.0015 22.9 5.3 81 9-95 55-135 (151)
36 2fo7_A Synthetic consensus TPR 44.1 48 0.0016 19.5 5.5 20 76-95 81-100 (136)
37 3as5_A MAMA; tetratricopeptide 43.5 36 0.0012 21.6 4.3 78 12-95 98-175 (186)
38 1fex_A TRF2-interacting telome 42.9 11 0.00037 23.3 1.5 38 57-95 4-42 (59)
39 1elr_A TPR2A-domain of HOP; HO 42.4 25 0.00086 21.0 3.3 82 9-95 23-110 (131)
40 3u4t_A TPR repeat-containing p 41.2 46 0.0016 23.1 4.9 81 9-95 93-173 (272)
41 2fe3_A Peroxide operon regulat 40.2 41 0.0014 23.3 4.5 31 69-99 25-56 (145)
42 1fch_A Peroxisomal targeting s 39.9 77 0.0026 22.9 6.1 85 8-98 82-166 (368)
43 2o03_A Probable zinc uptake re 39.1 36 0.0012 23.1 4.0 31 69-99 14-45 (131)
44 2q7f_A YRRB protein; TPR, prot 38.9 83 0.0028 21.1 5.8 80 10-95 111-190 (243)
45 1q02_A Sequestosome 1; helical 38.5 21 0.00071 22.2 2.3 21 58-79 2-22 (52)
46 2ho1_A Type 4 fimbrial biogene 38.4 84 0.0029 21.4 5.9 21 75-95 220-240 (252)
47 4i17_A Hypothetical protein; T 38.4 78 0.0027 21.6 5.7 83 7-95 59-148 (228)
48 2w57_A Ferric uptake regulatio 38.4 47 0.0016 23.2 4.6 31 69-99 20-52 (150)
49 3u4t_A TPR repeat-containing p 37.5 53 0.0018 22.7 4.7 86 6-96 19-106 (272)
50 2pl2_A Hypothetical conserved 37.3 72 0.0025 22.2 5.5 84 7-96 22-116 (217)
51 1xnf_A Lipoprotein NLPI; TPR, 36.5 80 0.0027 21.7 5.5 21 75-95 122-142 (275)
52 2vq2_A PILW, putative fimbrial 35.6 93 0.0032 20.4 6.7 27 11-37 63-89 (225)
53 2xig_A Ferric uptake regulatio 35.3 45 0.0016 23.3 4.1 31 69-99 30-61 (150)
54 2e2e_A Formate-dependent nitri 34.7 95 0.0032 20.2 5.7 82 9-96 63-147 (177)
55 4ga2_A E3 SUMO-protein ligase 34.4 78 0.0027 20.8 5.0 82 9-96 16-97 (150)
56 4ets_A Ferric uptake regulatio 34.2 56 0.0019 23.3 4.5 31 69-99 36-69 (162)
57 1w3b_A UDP-N-acetylglucosamine 33.5 71 0.0024 23.7 5.1 22 75-96 112-133 (388)
58 3cv0_A Peroxisome targeting si 33.5 71 0.0024 22.4 4.9 81 11-97 193-273 (327)
59 4eqf_A PEX5-related protein; a 33.3 98 0.0033 22.6 5.8 85 9-99 232-316 (365)
60 3vtx_A MAMA; tetratricopeptide 33.0 1E+02 0.0035 20.1 5.7 79 11-95 60-138 (184)
61 2fbn_A 70 kDa peptidylprolyl i 33.0 1E+02 0.0035 20.7 5.5 65 25-95 89-153 (198)
62 1wao_1 Serine/threonine protei 32.7 86 0.0029 25.4 5.9 85 6-96 22-106 (477)
63 2c2l_A CHIP, carboxy terminus 31.8 63 0.0021 23.8 4.5 85 6-96 20-104 (281)
64 2veb_A Protoglobin; hemoprotei 31.4 62 0.0021 24.7 4.5 60 18-77 104-180 (195)
65 2fu4_A Ferric uptake regulatio 31.1 64 0.0022 19.6 3.9 31 69-99 20-52 (83)
66 3uq3_A Heat shock protein STI1 31.1 1.2E+02 0.0041 20.3 6.1 78 12-95 127-204 (258)
67 3uq3_A Heat shock protein STI1 31.0 87 0.003 21.0 4.9 86 8-99 157-242 (258)
68 1kdx_B CREB; complex (transcri 30.5 42 0.0014 18.3 2.4 22 11-32 4-25 (28)
69 3ieg_A DNAJ homolog subfamily 30.0 79 0.0027 22.4 4.7 82 8-95 21-102 (359)
70 3cv0_A Peroxisome targeting si 29.8 1.2E+02 0.004 21.3 5.5 83 9-97 40-122 (327)
71 3gyz_A Chaperone protein IPGC; 29.7 1E+02 0.0036 20.9 5.1 79 12-96 24-102 (151)
72 2r5s_A Uncharacterized protein 29.3 62 0.0021 21.5 3.8 87 8-96 24-140 (176)
73 1hh8_A P67PHOX, NCF-2, neutrop 28.9 1.3E+02 0.0044 20.0 5.8 84 8-96 55-153 (213)
74 4eqf_A PEX5-related protein; a 28.6 85 0.0029 23.0 4.7 84 7-96 82-165 (365)
75 2vgx_A Chaperone SYCD; alterna 28.3 1.2E+02 0.0039 20.0 5.1 80 10-95 7-86 (148)
76 2ho1_A Type 4 fimbrial biogene 28.3 1.4E+02 0.0048 20.2 6.1 18 76-93 153-170 (252)
77 3hym_B Cell division cycle pro 27.5 1.6E+02 0.0054 20.6 5.9 83 9-96 178-268 (330)
78 2ond_A Cleavage stimulation fa 27.4 95 0.0032 22.7 4.9 35 60-95 166-200 (308)
79 2y4t_A DNAJ homolog subfamily 27.0 1.6E+02 0.0054 22.0 6.1 80 10-95 163-242 (450)
80 1w3b_A UDP-N-acetylglucosamine 25.9 2E+02 0.0068 21.2 7.2 29 11-39 190-218 (388)
81 3rkv_A Putative peptidylprolyl 25.7 92 0.0032 20.2 4.1 70 20-95 59-128 (162)
82 3qky_A Outer membrane assembly 25.7 75 0.0026 22.3 3.9 66 28-96 152-227 (261)
83 2vsy_A XCC0866; transferase, g 25.6 1.7E+02 0.006 23.4 6.5 28 10-37 43-70 (568)
84 1fch_A Peroxisomal targeting s 24.8 1.5E+02 0.0053 21.3 5.5 23 75-97 296-318 (368)
85 3urz_A Uncharacterized protein 24.6 73 0.0025 22.0 3.6 22 75-96 168-189 (208)
86 2wy4_A Single domain haemoglob 23.9 1.6E+02 0.0055 19.4 5.3 76 11-87 61-138 (140)
87 3ieg_A DNAJ homolog subfamily 23.9 1.9E+02 0.0066 20.3 5.8 80 11-96 141-220 (359)
88 1oyi_A Double-stranded RNA-bin 23.7 43 0.0015 22.2 2.0 32 53-85 4-35 (82)
89 2y4t_A DNAJ homolog subfamily 23.1 1.5E+02 0.005 22.2 5.2 80 10-95 46-125 (450)
90 3fp2_A TPR repeat-containing p 21.9 1.2E+02 0.004 23.3 4.6 78 12-95 298-375 (537)
91 2yhc_A BAMD, UPF0169 lipoprote 21.7 1.7E+02 0.0057 20.2 5.1 65 29-97 152-217 (225)
92 3qou_A Protein YBBN; thioredox 21.7 1.4E+02 0.0049 21.8 4.9 88 8-97 135-252 (287)
93 3fp2_A TPR repeat-containing p 21.3 2.8E+02 0.0094 21.2 7.1 82 8-96 261-342 (537)
No 1
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=99.72 E-value=3.5e-18 Score=142.41 Aligned_cols=79 Identities=25% Similarity=0.255 Sum_probs=67.8
Q ss_pred hhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHHHHhh----CCCCCC----CCC-----CCCcchHHHH
Q psy8555 46 AGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFENYTTR----HPNIQT----RGP-----PYYLPLLNFI 112 (127)
Q Consensus 46 ~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y~~~----hp~i~~----~~~-----p~~~PLLnF~ 112 (127)
++.|+.+|+++++++|.|+ |||||||||||++|.++|+.+|++|+++ ||++.. +++ ++..|||||+
T Consensus 170 ~a~mL~ew~~~~~~~e~dl-fiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl 248 (336)
T 3lpz_A 170 LARMEYEWYKQDESHTAPL-YCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFI 248 (336)
T ss_dssp HHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCccHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHH
Confidence 8899999999999999999 9999999999999999999999999975 576432 111 2349999999
Q ss_pred HHHHHhhcccccc
Q psy8555 113 WFLLKVIETYTVT 125 (127)
Q Consensus 113 ~fLl~tie~~~l~ 125 (127)
|||+.|||+++..
T Consensus 249 ~lLllt~q~~~~~ 261 (336)
T 3lpz_A 249 SMLLLSVQKGSPD 261 (336)
T ss_dssp HHHHHHHHSCCHH
T ss_pred HHHHHHHhcCCHH
Confidence 9999999999754
No 2
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=99.72 E-value=6.4e-19 Score=145.14 Aligned_cols=79 Identities=18% Similarity=0.094 Sum_probs=69.4
Q ss_pred hhhhhHHHhhc---CCCCchhHHHHHHHHHHHHhhcCcccHHHHHHHHHhhC--------CCCCC--CCCCC--CcchHH
Q psy8555 46 AGGLFGTEYDL---NLSIDIDLNGSWTVVLQYLCLQNKVTANQTFENYTTRH--------PNIQT--RGPPY--YLPLLN 110 (127)
Q Consensus 46 ~~~m~g~~~~k---~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y~~~h--------p~i~~--~~~p~--~~PLLn 110 (127)
++.|+.+|++. |+++|.|+ ||+||||||||++|.++|+.+|++|+++| ++++. ++.|+ .+||||
T Consensus 168 ~a~~l~~w~~~~~~~~~~e~dl-f~~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~p~~plln 246 (312)
T 2wpv_A 168 YVDLLWDWLCQVDDIEDSTVAE-FFSRLVFNYLFISNISFAHESKDIFLERFIEKFHPKYEKIDKNGYEIVFFEDYSDLN 246 (312)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHH-HHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEESSCHHHH
T ss_pred HHHHHHHHHHhcCCCCcchHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCccHH
Confidence 89999999998 99999999 99999999999999999999999999998 44321 24344 589999
Q ss_pred HHHHHHHhhcccccc
Q psy8555 111 FIWFLLKVIETYTVT 125 (127)
Q Consensus 111 F~~fLl~tie~~~l~ 125 (127)
|+|||+.|||+++.+
T Consensus 247 F~~lLl~t~e~~~~~ 261 (312)
T 2wpv_A 247 FLQLLLITCQTKDKS 261 (312)
T ss_dssp HHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhcCCHH
Confidence 999999999998753
No 3
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=99.67 E-value=2.6e-17 Score=137.23 Aligned_cols=56 Identities=21% Similarity=0.411 Sum_probs=53.1
Q ss_pred CchHHHHHHHHhhhhccCCc-cHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcC
Q psy8555 2 KLVAFNTLCQQYQTSIKRDP-AYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLN 57 (127)
Q Consensus 2 ~~~lFr~L~~~Y~~sl~rd~-~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~ 57 (127)
..++|+.||++|+++|+||| +|.+|||+||++||||++|||+||+++|||++|+.+
T Consensus 259 ~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~~prq~n~L~~mmg~lFgGg 315 (336)
T 3lpz_A 259 SPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQRPRQSNPLLDMMGSLFGGG 315 (336)
T ss_dssp CHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHhcCCC
Confidence 47899999999999999998 999999999999999999999999999999999864
No 4
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=99.47 E-value=1.1e-14 Score=119.91 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=32.7
Q ss_pred CchHHHHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhc
Q psy8555 2 KLVAFNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDL 56 (127)
Q Consensus 2 ~~~lFr~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k 56 (127)
..++|+.||++|+++|+ +|++|||+||++||||++|+|+|++++||+++|+.
T Consensus 259 ~~~lF~~L~~~Y~~~L~---~~~~~L~~Ig~~yFgi~~~~q~~~l~~mm~~lfgG 310 (312)
T 2wpv_A 259 DKSYFLNLKNHYLDFSQ---AYKSELEFLGQEYFNIVAPKQTNFLQDMMSGFLGG 310 (312)
T ss_dssp CHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHHCCC------------------
T ss_pred CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHhCC
Confidence 57899999999999998 99999999999999999998888899999999974
No 5
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=81.54 E-value=3.8 Score=24.31 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=56.4
Q ss_pred HHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCC--chhHHHHHHHHHHHHhh-cCcccH
Q psy8555 7 NTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSI--DIDLNGSWTVVLQYLCL-QNKVTA 83 (127)
Q Consensus 7 r~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~--E~Dl~~IaqAVLQ~Lcl-~n~~~A 83 (127)
..-.+.|...++.+|...+.+-.+|..|+....... --..+....+. .|. ..+. ....|.. +..+ ++...|
T Consensus 23 ~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~---A~~~~~~a~~~-~~~~~~~~~-~~~l~~~-~~~~~~~~~~A 96 (112)
T 2kck_A 23 TESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEE---AVDCYNYVINV-IEDEYNKDV-WAAKADA-LRYIEGKEVEA 96 (112)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHT-SCCTTCHHH-HHHHHHH-HTTCSSCSHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHHh-CcccchHHH-HHHHHHH-HHHHhCCHHHH
Confidence 344566777777777777888899999987765432 12334444433 455 4555 4444444 3678 899999
Q ss_pred HHHHHHHHhhCCC
Q psy8555 84 NQTFENYTTRHPN 96 (127)
Q Consensus 84 ~~~f~~y~~~hp~ 96 (127)
...+.+..+.+|+
T Consensus 97 ~~~~~~~~~~~p~ 109 (112)
T 2kck_A 97 EIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHGGGCCC
T ss_pred HHHHHHHhhcccC
Confidence 9999999998874
No 6
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=73.34 E-value=8.4 Score=25.21 Aligned_cols=85 Identities=16% Similarity=0.128 Sum_probs=61.5
Q ss_pred HHHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHH
Q psy8555 6 FNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQ 85 (127)
Q Consensus 6 Fr~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~ 85 (127)
|..-.+.|...|+.+|...+.+-.+|..|+.......+ -..+....+. .|.-.+. ....|+.. ..+++...|..
T Consensus 29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A---~~~~~~al~~-~p~~~~a-~~~lg~~~-~~~~~~~~A~~ 102 (126)
T 4gco_A 29 YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRA---LDDCDTCIRL-DSKFIKG-YIRKAACL-VAMREWSKAQR 102 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHH-CTTCHHH-HHHHHHHH-HHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHH---HHHHHHHHHh-hhhhhHH-HHHHHHHH-HHCCCHHHHHH
Confidence 34456888999999999999999999999977654321 1223333332 4556666 66666665 78999999999
Q ss_pred HHHHHHhhCCC
Q psy8555 86 TFENYTTRHPN 96 (127)
Q Consensus 86 ~f~~y~~~hp~ 96 (127)
.|....+..|.
T Consensus 103 ~~~~al~l~P~ 113 (126)
T 4gco_A 103 AYEDALQVDPS 113 (126)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHHCcC
Confidence 99999998763
No 7
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=73.00 E-value=13 Score=22.62 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=57.2
Q ss_pred HHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHH
Q psy8555 8 TLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTF 87 (127)
Q Consensus 8 ~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f 87 (127)
.-.+.|...++.+|...+.+-.+|.+|+....... --..+....+. .|...+. ....|.. +..+++...|...|
T Consensus 34 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~a~~~-~~~~~~~-~~~la~~-~~~~~~~~~A~~~~ 107 (133)
T 2lni_A 34 QAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQL---ALKDCEECIQL-EPTFIKG-YTRKAAA-LEAMKDYTKAMDVY 107 (133)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHH---HHHHHHHHHHh-CCCchHH-HHHHHHH-HHHHhhHHHHHHHH
Confidence 34567788888888888999999999987654432 12334444433 4555555 5545544 47889999999999
Q ss_pred HHHHhhCC
Q psy8555 88 ENYTTRHP 95 (127)
Q Consensus 88 ~~y~~~hp 95 (127)
.+..+..|
T Consensus 108 ~~~~~~~p 115 (133)
T 2lni_A 108 QKALDLDS 115 (133)
T ss_dssp HHHHHHCG
T ss_pred HHHHHhCC
Confidence 99998776
No 8
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=71.51 E-value=5.9 Score=24.94 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=61.6
Q ss_pred HHHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHH
Q psy8555 6 FNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQ 85 (127)
Q Consensus 6 Fr~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~ 85 (127)
|..-.+.|...++.+|.....+-.+|..|+....... --..+...... .|...+. ....|... ..+++...|..
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~-~p~~~~~-~~~lg~~~-~~~~~~~~A~~ 93 (126)
T 3upv_A 20 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE---AIADCNKAIEK-DPNFVRA-YIRKATAQ-IAVKEYASALE 93 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHHH-HHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHH---HHHHHHHHHHh-CCCcHHH-HHHHHHHH-HHHhCHHHHHH
Confidence 3445577888888899999999999999997654432 12233333332 4666666 66666655 77899999999
Q ss_pred HHHHHHhhCCCCCC
Q psy8555 86 TFENYTTRHPNIQT 99 (127)
Q Consensus 86 ~f~~y~~~hp~i~~ 99 (127)
.|.+..+..|+...
T Consensus 94 ~~~~al~~~p~~~~ 107 (126)
T 3upv_A 94 TLDAARTKDAEVNN 107 (126)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcccCC
Confidence 99999998854433
No 9
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=70.36 E-value=9.7 Score=22.53 Aligned_cols=83 Identities=17% Similarity=-0.017 Sum_probs=55.2
Q ss_pred HHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHH
Q psy8555 7 NTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQT 86 (127)
Q Consensus 7 r~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~ 86 (127)
....+.|...++.+|.....+-.+|..|+....... --..+...... .|...+. ....|.. +..+++...|...
T Consensus 21 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---A~~~~~~~~~~-~~~~~~~-~~~~a~~-~~~~~~~~~A~~~ 94 (118)
T 1elw_A 21 DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQK---AYEDGCKTVDL-KPDWGKG-YSRKAAA-LEFLNRFEEAKRT 94 (118)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHH---HHHHHHHHHHh-CcccHHH-HHHHHHH-HHHHhhHHHHHHH
Confidence 344566777777788778888999999986544322 12334444433 3555555 4444544 4788999999999
Q ss_pred HHHHHhhCC
Q psy8555 87 FENYTTRHP 95 (127)
Q Consensus 87 f~~y~~~hp 95 (127)
+.+..+..|
T Consensus 95 ~~~~~~~~~ 103 (118)
T 1elw_A 95 YEEGLKHEA 103 (118)
T ss_dssp HHHHHTTCT
T ss_pred HHHHHHcCC
Confidence 999988665
No 10
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=68.75 E-value=12 Score=23.16 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=50.7
Q ss_pred HHHhhhhccCCccHH---HHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCc---hhHHHHHHHHHHHHhhcCcccH
Q psy8555 10 CQQYQTSIKRDPAYS---DYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSID---IDLNGSWTVVLQYLCLQNKVTA 83 (127)
Q Consensus 10 ~~~Y~~sl~rd~~~~---~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E---~Dl~~IaqAVLQ~Lcl~n~~~A 83 (127)
.+.|...++.+|... +.+-.+|..|+....... --..+....+. +|.. .+. ....|.. +..+++...|
T Consensus 22 ~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~---A~~~~~~~~~~-~p~~~~~~~~-~~~la~~-~~~~g~~~~A 95 (129)
T 2xev_A 22 SQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQL---AEAQFRDLVSR-YPTHDKAAGG-LLKLGLS-QYGEGKNTEA 95 (129)
T ss_dssp HHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTSTTHHHH-HHHHHHH-HHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHH---HHHHHHHHHHH-CCCCcccHHH-HHHHHHH-HHHcCCHHHH
Confidence 345555565555444 788889999987654432 22345555544 3333 343 3333333 3678999999
Q ss_pred HHHHHHHHhhCC
Q psy8555 84 NQTFENYTTRHP 95 (127)
Q Consensus 84 ~~~f~~y~~~hp 95 (127)
...|.+..+..|
T Consensus 96 ~~~~~~~~~~~p 107 (129)
T 2xev_A 96 QQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHHCC
Confidence 999999999886
No 11
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=68.21 E-value=10 Score=26.74 Aligned_cols=83 Identities=13% Similarity=0.158 Sum_probs=60.3
Q ss_pred HHHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHH
Q psy8555 6 FNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQ 85 (127)
Q Consensus 6 Fr~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~ 85 (127)
+..-.+.|...++.+|...+.+-.+|.+|+....... --..+....... ...+. ....+.+ +..+|+...|..
T Consensus 100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~--~~~~~-~~~la~~-~~~~g~~~~A~~ 172 (217)
T 2pl2_A 100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK---AEASLKQALALE--DTPEI-RSALAEL-YLSMGRLDEALA 172 (217)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHC--CCHHH-HHHHHHH-HHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH---HHHHHHHHHhcc--cchHH-HHHHHHH-HHHcCCHHHHHH
Confidence 3444567888888899999999999999998765532 223455555554 44555 5555554 478999999999
Q ss_pred HHHHHHhhCC
Q psy8555 86 TFENYTTRHP 95 (127)
Q Consensus 86 ~f~~y~~~hp 95 (127)
.|....+..|
T Consensus 173 ~~~~al~~~P 182 (217)
T 2pl2_A 173 QYAKALEQAP 182 (217)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHhCC
Confidence 9999999876
No 12
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=68.19 E-value=15 Score=21.76 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=50.2
Q ss_pred HHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHH
Q psy8555 10 CQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFEN 89 (127)
Q Consensus 10 ~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~ 89 (127)
.+.|...++.+|.....+-.+|..|+....... --..+....+. .|...+. ...-+.. +...++...|...|.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~~~~~-~~~~~~~-~~~la~~-~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 29 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE---AIEYYQKALEL-DPNNAEA-WYNLGNA-YYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHh-CCccHHH-HHHHHHH-HHHhcCHHHHHHHHHH
Confidence 355556666666666778888888887544322 12334444433 3444554 4444443 3678999999999999
Q ss_pred HHhhCC
Q psy8555 90 YTTRHP 95 (127)
Q Consensus 90 y~~~hp 95 (127)
..+..|
T Consensus 103 ~~~~~~ 108 (125)
T 1na0_A 103 ALELDP 108 (125)
T ss_dssp HHHHCT
T ss_pred HHHhCC
Confidence 998775
No 13
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=67.53 E-value=11 Score=25.07 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=26.2
Q ss_pred HHHHHHhhhhccCCccHHHHHHHHHHHhcCCCC
Q psy8555 7 NTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQP 39 (127)
Q Consensus 7 r~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~ 39 (127)
..-.+.|...|+.+|...+.+-.+|.+|+....
T Consensus 22 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 54 (184)
T 3vtx_A 22 DGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL 54 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 344577888888899999999999999987654
No 14
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.35 E-value=20 Score=22.32 Aligned_cols=83 Identities=8% Similarity=-0.048 Sum_probs=57.2
Q ss_pred HHHHHHhhhhccCCccH---HHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccH
Q psy8555 7 NTLCQQYQTSIKRDPAY---SDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTA 83 (127)
Q Consensus 7 r~L~~~Y~~sl~rd~~~---~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A 83 (127)
..-.+.|...++.+|.- ...+-.+|..|+....... .-..+....+. .|...+. ....|.. +..+++...|
T Consensus 45 ~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---A~~~~~~~~~~-~~~~~~~-~~~~a~~-~~~~~~~~~A 118 (148)
T 2dba_A 45 GGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDK---AETEASKAIEK-DGGDVKA-LYRRSQA-LEKLGRLDQA 118 (148)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-TSCCHHH-HHHHHHH-HHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHH---HHHHHHHHHhh-CccCHHH-HHHHHHH-HHHcCCHHHH
Confidence 34457788888888875 7888899999987654432 12333333333 4555666 5555554 4778999999
Q ss_pred HHHHHHHHhhCC
Q psy8555 84 NQTFENYTTRHP 95 (127)
Q Consensus 84 ~~~f~~y~~~hp 95 (127)
...|.+..+..|
T Consensus 119 ~~~~~~al~~~p 130 (148)
T 2dba_A 119 VLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHcCC
Confidence 999999998776
No 15
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=65.92 E-value=18 Score=21.64 Aligned_cols=81 Identities=12% Similarity=0.036 Sum_probs=53.9
Q ss_pred HHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHH
Q psy8555 9 LCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFE 88 (127)
Q Consensus 9 L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~ 88 (127)
-.+.|...++.+|.....+-.+|..|+....... --..+...... .|...+. ....|.+ +..+++...|...|.
T Consensus 31 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---A~~~~~~~~~~-~~~~~~~-~~~~~~~-~~~~~~~~~A~~~~~ 104 (131)
T 2vyi_A 31 AVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG---AVQDCERAICI-DPAYSKA-YGRMGLA-LSSLNKHVEAVAYYK 104 (131)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHH---HHHHHHHHHhc-CccCHHH-HHHHHHH-HHHhCCHHHHHHHHH
Confidence 4456666777777777888889999987654322 12334444433 4555555 4444444 478899999999999
Q ss_pred HHHhhCC
Q psy8555 89 NYTTRHP 95 (127)
Q Consensus 89 ~y~~~hp 95 (127)
+..+..|
T Consensus 105 ~~~~~~p 111 (131)
T 2vyi_A 105 KALELDP 111 (131)
T ss_dssp HHHHHST
T ss_pred HHHhcCc
Confidence 9998776
No 16
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=65.86 E-value=14 Score=23.99 Aligned_cols=103 Identities=12% Similarity=-0.032 Sum_probs=64.0
Q ss_pred HHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHH
Q psy8555 7 NTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQT 86 (127)
Q Consensus 7 r~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~ 86 (127)
..-.+.|...++.+|....++-.+|..|+....... --..+...... .|...+. ....++. +..+|+...|...
T Consensus 35 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~-~p~~~~~-~~~lg~~-~~~~g~~~~A~~~ 108 (142)
T 2xcb_A 35 DDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQ---ALQSYSYGALM-DINEPRF-PFHAAEC-HLQLGDLDGAESG 108 (142)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCTHH-HHHHHHH-HHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHH---HHHHHHHHHhc-CCCCcHH-HHHHHHH-HHHcCCHHHHHHH
Confidence 334566777777788888888888888886554322 12233333332 3566666 5555554 3778999999999
Q ss_pred HHHHHhhCCCCCCCCCCCCcchHHHHHHHHHhhc
Q psy8555 87 FENYTTRHPNIQTRGPPYYLPLLNFIWFLLKVIE 120 (127)
Q Consensus 87 f~~y~~~hp~i~~~~~p~~~PLLnF~~fLl~tie 120 (127)
|....+..|. .|....+..-+.-++..|+
T Consensus 109 ~~~al~~~p~-----~~~~~~~~~~~~~~l~~l~ 137 (142)
T 2xcb_A 109 FYSARALAAA-----QPAHEALAARAGAMLEAVT 137 (142)
T ss_dssp HHHHHHHHHT-----CGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-----CcchHHHHHHHHHHHHHHH
Confidence 9998887762 2223455555555554443
No 17
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=64.47 E-value=11 Score=25.05 Aligned_cols=84 Identities=12% Similarity=0.026 Sum_probs=59.7
Q ss_pred HHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHH
Q psy8555 7 NTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQT 86 (127)
Q Consensus 7 r~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~ 86 (127)
..-.+.|...++.+|....++-.+|.+|+....... --..+...... .|...+. ....++.. ..+++...|...
T Consensus 28 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~-~p~~~~~-~~~lg~~~-~~~g~~~~A~~~ 101 (164)
T 3sz7_A 28 SKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEK---AAEDAELATVV-DPKYSKA-WSRLGLAR-FDMADYKGAKEA 101 (164)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHH---HHHHHHHHHHh-CCCCHHH-HHHHHHHH-HHccCHHHHHHH
Confidence 445577888888889889999999999998654432 12233333332 4566666 66666654 778999999999
Q ss_pred HHHHHhhCCC
Q psy8555 87 FENYTTRHPN 96 (127)
Q Consensus 87 f~~y~~~hp~ 96 (127)
|....+..|.
T Consensus 102 ~~~al~~~p~ 111 (164)
T 3sz7_A 102 YEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHhCCC
Confidence 9999998874
No 18
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=61.78 E-value=26 Score=23.36 Aligned_cols=102 Identities=12% Similarity=-0.024 Sum_probs=59.8
Q ss_pred HHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHH
Q psy8555 9 LCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFE 88 (127)
Q Consensus 9 L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~ 88 (127)
-.+.|...++.+|....++-.+|..|+....... --..+...... .|...+. ....++.. +.+|+...|...|.
T Consensus 40 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~l-~p~~~~~-~~~lg~~~-~~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 40 AHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDL---AIHSYSYGAVM-DIXEPRF-PFHAAECL-LQXGELAEAESGLF 113 (148)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-STTCTHH-HHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHH---HHHHHHHHHhc-CCCCchH-HHHHHHHH-HHcCCHHHHHHHHH
Confidence 3456666677777777777778888876654422 11233332222 3555565 55555554 67888888888888
Q ss_pred HHHhhCCCCCCCCCCCCcchHHHHHHHHHhhcc
Q psy8555 89 NYTTRHPNIQTRGPPYYLPLLNFIWFLLKVIET 121 (127)
Q Consensus 89 ~y~~~hp~i~~~~~p~~~PLLnF~~fLl~tie~ 121 (127)
...+..|. .|....+..-+.-++..+..
T Consensus 114 ~al~~~p~-----~~~~~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 114 LAQELIAN-----XPEFXELSTRVSSMLEAIKL 141 (148)
T ss_dssp HHHHHHTT-----CGGGHHHHHHHHHHHHHC--
T ss_pred HHHHHCcC-----CCcchHHHHHHHHHHHHHHh
Confidence 88887762 22334555555555555543
No 19
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=60.25 E-value=30 Score=21.97 Aligned_cols=81 Identities=10% Similarity=0.058 Sum_probs=48.3
Q ss_pred HHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHH
Q psy8555 9 LCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFE 88 (127)
Q Consensus 9 L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~ 88 (127)
-.+.|...++.+|.....+-.+|..|+....... -...+....+. .|...+. ....|.+ +...++...|...|.
T Consensus 27 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---A~~~~~~~~~~-~~~~~~~-~~~~a~~-~~~~~~~~~A~~~~~ 100 (186)
T 3as5_A 27 AVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR---GTELLERSLAD-APDNVKV-ATVLGLT-YVQVQKYDLAVPLLI 100 (186)
T ss_dssp HHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHH---HHHHHHHHHhc-CCCCHHH-HHHHHHH-HHHhcCHHHHHHHHH
Confidence 3456667777777777777888888875443321 12233333333 3444555 4444433 366778888888888
Q ss_pred HHHhhCC
Q psy8555 89 NYTTRHP 95 (127)
Q Consensus 89 ~y~~~hp 95 (127)
+..+.+|
T Consensus 101 ~~~~~~~ 107 (186)
T 3as5_A 101 KVAEANP 107 (186)
T ss_dssp HHHHHCT
T ss_pred HHHhcCc
Confidence 8777654
No 20
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=58.94 E-value=14 Score=25.86 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCcccHHHHHHHHHhhCCCCCC
Q psy8555 69 TVVLQYLCLQNKVTANQTFENYTTRHPNIQT 99 (127)
Q Consensus 69 qAVLQ~Lcl~n~~~A~~~f~~y~~~hp~i~~ 99 (127)
++||.+|......+|..+++...++.|+++.
T Consensus 22 ~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~ 52 (145)
T 3eyy_A 22 QLVLEAVDTLEHATPDDILGEVRKTASGINI 52 (145)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHHTTCTTCCH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhCCCCCH
Confidence 5788888776789999999999999988766
No 21
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=58.17 E-value=11 Score=24.58 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=54.1
Q ss_pred HHHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHH----HHHhhcCcc
Q psy8555 6 FNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVL----QYLCLQNKV 81 (127)
Q Consensus 6 Fr~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVL----Q~Lcl~n~~ 81 (127)
|..-.+.|...|+-+|....++-.+|..|+.......+ -..+............+...++++-. -+..+++..
T Consensus 24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A---~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~ 100 (127)
T 4gcn_A 24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC---VQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLS 100 (127)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHH---HHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHH
Confidence 44556889999999999999999999999987654321 11222222111111111112333322 246789999
Q ss_pred cHHHHHHHHHhhCC
Q psy8555 82 TANQTFENYTTRHP 95 (127)
Q Consensus 82 ~A~~~f~~y~~~hp 95 (127)
.|...|....+.+|
T Consensus 101 ~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 101 LAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhCc
Confidence 99999999888765
No 22
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=57.38 E-value=18 Score=22.58 Aligned_cols=80 Identities=10% Similarity=0.127 Sum_probs=58.3
Q ss_pred HHHhhhhccC---CccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHH
Q psy8555 10 CQQYQTSIKR---DPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQT 86 (127)
Q Consensus 10 ~~~Y~~sl~r---d~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~ 86 (127)
.+.|...++. ||.....+-.+|.+|+....... --..+...... .|...+. ...-++. +..+++...|...
T Consensus 10 ~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~---A~~~~~~al~~-~p~~~~~-~~~l~~~-~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 10 VPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRK---AEAVLANGVKQ-FPNHQAL-RVFYAMV-LYNLGRYEQGVEL 83 (117)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHHTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHh-CCCchHH-HHHHHHH-HHHcCCHHHHHHH
Confidence 3567777877 79999999999999998765533 12344444333 4666777 5555555 4789999999999
Q ss_pred HHHHHhhCC
Q psy8555 87 FENYTTRHP 95 (127)
Q Consensus 87 f~~y~~~hp 95 (127)
|.+..+..|
T Consensus 84 ~~~al~~~p 92 (117)
T 3k9i_A 84 LLKIIAETS 92 (117)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhCC
Confidence 999998776
No 23
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=57.02 E-value=26 Score=24.87 Aligned_cols=86 Identities=12% Similarity=0.185 Sum_probs=54.9
Q ss_pred HHHHHHhhhhccCCccH---HHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhH-HHHHHHHHHHHh------
Q psy8555 7 NTLCQQYQTSIKRDPAY---SDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDL-NGSWTVVLQYLC------ 76 (127)
Q Consensus 7 r~L~~~Y~~sl~rd~~~---~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl-~~IaqAVLQ~Lc------ 76 (127)
..-.+.|...++.+|.- .+.+-.+|..|+....... --..+....+.. |...+. ...-..-.-+..
T Consensus 32 ~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~---A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~ 107 (261)
T 3qky_A 32 DRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLL---AASEYERFIQIY-QIDPRVPQAEYERAMCYYKLSPPYE 107 (261)
T ss_dssp HHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHH---HHHHHHHHHHHC-CCCchhHHHHHHHHHHHHHhccccc
Confidence 34456777788777666 8899999999998765432 234555555542 322221 012222222344
Q ss_pred --hcCcccHHHHHHHHHhhCCC
Q psy8555 77 --LQNKVTANQTFENYTTRHPN 96 (127)
Q Consensus 77 --l~n~~~A~~~f~~y~~~hp~ 96 (127)
+++...|...|.+..+..|.
T Consensus 108 ~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 108 LDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTT
T ss_pred ccchhHHHHHHHHHHHHHHCcC
Confidence 88999999999999998874
No 24
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=55.65 E-value=32 Score=21.80 Aligned_cols=81 Identities=15% Similarity=0.079 Sum_probs=53.7
Q ss_pred HHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHH
Q psy8555 9 LCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFE 88 (127)
Q Consensus 9 L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~ 88 (127)
-.+.|...++.+|...+.+-.+|.+|+....... --..+...... .|...+. ....|.. +..+++...|...|.
T Consensus 32 A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~---A~~~~~~a~~~-~~~~~~~-~~~~a~~-~~~~~~~~~A~~~~~ 105 (166)
T 1a17_A 32 AIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGY---ALGDATRAIEL-DKKYIKG-YYRRAAS-NMALGKFRAALRDYE 105 (166)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH---HHHHHHHHHHh-CcccHHH-HHHHHHH-HHHhccHHHHHHHHH
Confidence 4466777777777778888888999887654322 12233333333 4555565 5555544 467899999999999
Q ss_pred HHHhhCC
Q psy8555 89 NYTTRHP 95 (127)
Q Consensus 89 ~y~~~hp 95 (127)
+..+..|
T Consensus 106 ~a~~~~p 112 (166)
T 1a17_A 106 TVVKVKP 112 (166)
T ss_dssp HHHHHST
T ss_pred HHHHhCC
Confidence 9988776
No 25
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=55.61 E-value=29 Score=23.00 Aligned_cols=83 Identities=12% Similarity=-0.029 Sum_probs=54.3
Q ss_pred HHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHH
Q psy8555 7 NTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQT 86 (127)
Q Consensus 7 r~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~ 86 (127)
..-.+.|...|+-+|...++.-.+|.+|+....... --..+-...+. .|...+. ...-|.+- +.+++...|...
T Consensus 48 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~---A~~~~~~al~~-~p~~~~~-~~~la~~~-~~~~~~~~aa~~ 121 (150)
T 4ga2_A 48 DLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK---AVECYRRSVEL-NPTQKDL-VLKIAELL-CKNDVTDGRAKY 121 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHHH-HHHCSSSSHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH---HHHHHHHHHHh-CCCCHHH-HHHHHHHH-HHcCChHHHHHH
Confidence 445577888888889999999999999987654432 12233333332 4666776 55555443 567888777766
Q ss_pred H-HHHHhhCC
Q psy8555 87 F-ENYTTRHP 95 (127)
Q Consensus 87 f-~~y~~~hp 95 (127)
| +...+..|
T Consensus 122 ~~~~al~l~P 131 (150)
T 4ga2_A 122 WVERAAKLFP 131 (150)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHhCc
Confidence 5 67777665
No 26
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=55.23 E-value=27 Score=24.31 Aligned_cols=83 Identities=8% Similarity=0.060 Sum_probs=56.2
Q ss_pred HHHHHhhhhccCCccHHHHHHH----------------HHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHH
Q psy8555 8 TLCQQYQTSIKRDPAYSDYLNK----------------IGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVV 71 (127)
Q Consensus 8 ~L~~~Y~~sl~rd~~~~~~L~~----------------IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAV 71 (127)
.-.+.|...++.+|...+..-. +|..|+....... --..+....+. .|...+. ....+.
T Consensus 22 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~-~p~~~~~-~~~lg~ 96 (208)
T 3urz_A 22 QAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDK---AYLFYKELLQK-APNNVDC-LEACAE 96 (208)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHH-CCCCHHH-HHHHHH
Confidence 3446677777778877777666 8888886554322 12233333333 4677777 677776
Q ss_pred HHHHhhcCcccHHHHHHHHHhhCCC
Q psy8555 72 LQYLCLQNKVTANQTFENYTTRHPN 96 (127)
Q Consensus 72 LQ~Lcl~n~~~A~~~f~~y~~~hp~ 96 (127)
+. ..+++...|...|....+..|.
T Consensus 97 ~~-~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 97 MQ-VCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp HH-HHHTCHHHHHHHHHHHHHHCTT
T ss_pred HH-HHcCCHHHHHHHHHHHHHcCCC
Confidence 65 6789999999999999987763
No 27
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=54.80 E-value=20 Score=23.77 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=12.8
Q ss_pred hhhhccCCccHHHHHHHHHHHhcCC
Q psy8555 13 YQTSIKRDPAYSDYLNKIGHIFFGI 37 (127)
Q Consensus 13 Y~~sl~rd~~~~~~L~~IGe~yFgI 37 (127)
|...++.+|...+.+-.+|.+|+..
T Consensus 33 ~~~al~~~p~~~~~~~~lg~~~~~~ 57 (177)
T 2e2e_A 33 LQDKIRANPQNSEQWALLGEYYLWQ 57 (177)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 3344444455555555556655543
No 28
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=54.28 E-value=15 Score=23.70 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=56.0
Q ss_pred HHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHH
Q psy8555 7 NTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQT 86 (127)
Q Consensus 7 r~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~ 86 (127)
..-.+.|...++.+|...+++-.+|.+|+....... --..+...... .|...+. ....++.. ..+++...|...
T Consensus 34 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~---A~~~~~~al~l-~P~~~~~-~~~la~~~-~~~g~~~~A~~~ 107 (121)
T 1hxi_A 34 AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGL---AIIALNHARML-DPKDIAV-HAALAVSH-TNEHNANAALAS 107 (121)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHh-CCCCHHH-HHHHHHHH-HHcCCHHHHHHH
Confidence 344567888888999999999999999987654432 12233333333 4566666 55555554 678899999999
Q ss_pred HHHHHhhCCC
Q psy8555 87 FENYTTRHPN 96 (127)
Q Consensus 87 f~~y~~~hp~ 96 (127)
+.+..+..|.
T Consensus 108 ~~~al~~~P~ 117 (121)
T 1hxi_A 108 LRAWLLSQPQ 117 (121)
T ss_dssp HHHHHC----
T ss_pred HHHHHHhCcC
Confidence 9999887764
No 29
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=51.95 E-value=46 Score=22.45 Aligned_cols=79 Identities=13% Similarity=0.018 Sum_probs=40.4
Q ss_pred HHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHHH
Q psy8555 11 QQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFENY 90 (127)
Q Consensus 11 ~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y 90 (127)
+.|...++.+|...+.+-.+|.+|+....... .-..+....+. .|...+. ....|.+ +..+++...|...+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~-~~~~~~~-~~~la~~-~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 146 PYLQRAVELNENDTEARFQFGMCLANEGMLDE---ALSQFAAVTEQ-DPGHADA-FYNAGVT-YAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHh-CcccHHH-HHHHHHH-HHHccCHHHHHHHHHHH
Confidence 34444444455555555666666665543321 12233333332 2333444 3333332 35677778888888877
Q ss_pred HhhCC
Q psy8555 91 TTRHP 95 (127)
Q Consensus 91 ~~~hp 95 (127)
.+..|
T Consensus 220 ~~~~p 224 (243)
T 2q7f_A 220 IDIQP 224 (243)
T ss_dssp HHHCT
T ss_pred HccCc
Confidence 77665
No 30
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=50.17 E-value=20 Score=22.29 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=58.5
Q ss_pred HHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHH
Q psy8555 7 NTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQT 86 (127)
Q Consensus 7 r~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~ 86 (127)
..-.+.|...++.+|....++-.+|.+|+....... --..+....+. .|...+. ....|.. +..+++...|...
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~al~~-~p~~~~~-~~~l~~~-~~~~~~~~~A~~~ 99 (137)
T 3q49_B 26 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQ---ALADCRRALEL-DGQSVKA-HFFLGQC-QLEMESYDEAIAN 99 (137)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHh-CchhHHH-HHHHHHH-HHHHhhHHHHHHH
Confidence 344567888888888888999999999987654432 12233333333 3555555 5555554 4778999999999
Q ss_pred HHHHHhhCCC
Q psy8555 87 FENYTTRHPN 96 (127)
Q Consensus 87 f~~y~~~hp~ 96 (127)
|....+..|.
T Consensus 100 ~~~a~~~~p~ 109 (137)
T 3q49_B 100 LQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHChh
Confidence 9999998875
No 31
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=49.44 E-value=22 Score=21.86 Aligned_cols=81 Identities=9% Similarity=0.008 Sum_probs=56.9
Q ss_pred HHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHH
Q psy8555 10 CQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFEN 89 (127)
Q Consensus 10 ~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~ 89 (127)
.+.|...++.+|.....+-.+|..|+....... --..+...... .|...+. ....|... ..+++...|...|..
T Consensus 5 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~-~p~~~~~-~~~la~~~-~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDA---ALPHLRAALDF-DPTYSVA-WKWLGKTL-QGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHHH-HHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHH---HHHHHHHHHHH-CCCcHHH-HHHHHHHH-HHcCCHHHHHHHHHH
Confidence 367888888999989999999999987665432 12334443333 4555555 55555544 678999999999999
Q ss_pred HHhhCCC
Q psy8555 90 YTTRHPN 96 (127)
Q Consensus 90 y~~~hp~ 96 (127)
..+..|.
T Consensus 79 al~~~~~ 85 (115)
T 2kat_A 79 GLAAAQS 85 (115)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 8887653
No 32
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=48.98 E-value=30 Score=23.73 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=26.2
Q ss_pred HHHHHHHhhc--CcccHHHHHHHHHhhCCCCCC
Q psy8555 69 TVVLQYLCLQ--NKVTANQTFENYTTRHPNIQT 99 (127)
Q Consensus 69 qAVLQ~Lcl~--n~~~A~~~f~~y~~~hp~i~~ 99 (127)
++||++|... ...+|..+++...++.|+++.
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~ 53 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGL 53 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCH
Confidence 6899999754 578999999999999887765
No 33
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=47.46 E-value=9.4 Score=21.60 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=20.1
Q ss_pred HhhcCcccHHHHHHHHHhhCCC
Q psy8555 75 LCLQNKVTANQTFENYTTRHPN 96 (127)
Q Consensus 75 Lcl~n~~~A~~~f~~y~~~hp~ 96 (127)
+|+..+..++.+...|.+.|+.
T Consensus 10 ~C~~~l~s~~~L~~Hye~~H~~ 31 (34)
T 3mjh_B 10 QCMKSLGSADELFKHYEAVHDA 31 (34)
T ss_dssp TTCCEESSHHHHHHHHHHHTSS
T ss_pred HHHHHcCCHHHHHHHHHhcccc
Confidence 6899999999999999999973
No 34
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=45.91 E-value=32 Score=23.80 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=26.4
Q ss_pred HHHHHHHhhc-CcccHHHHHHHHHhhCCCCCC
Q psy8555 69 TVVLQYLCLQ-NKVTANQTFENYTTRHPNIQT 99 (127)
Q Consensus 69 qAVLQ~Lcl~-n~~~A~~~f~~y~~~hp~i~~ 99 (127)
++||++|... ...+|..+++...++.|+++.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~ 48 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGL 48 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCH
Confidence 6899999764 578999999999999988766
No 35
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=45.55 E-value=44 Score=22.87 Aligned_cols=81 Identities=19% Similarity=0.110 Sum_probs=50.4
Q ss_pred HHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHH
Q psy8555 9 LCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFE 88 (127)
Q Consensus 9 L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~ 88 (127)
-.+.|...++.+|....+.-.+|..|+.......+ -..+...... .|...+. ..-.++.. +.+|+...|...|.
T Consensus 55 A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A---i~~~~~al~l-~P~~~~~-~~~lg~~~-~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 55 AEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQA---ADLYAVAFAL-GKNDYTP-VFHTGQCQ-LRLKAPLKAKECFE 128 (151)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHH-SSSCCHH-HHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHH---HHHHHHHHhh-CCCCcHH-HHHHHHHH-HHcCCHHHHHHHHH
Confidence 34566667777777777777777777766544321 1223322222 3555555 55555543 67888888888888
Q ss_pred HHHhhCC
Q psy8555 89 NYTTRHP 95 (127)
Q Consensus 89 ~y~~~hp 95 (127)
...+..|
T Consensus 129 ~al~l~~ 135 (151)
T 3gyz_A 129 LVIQHSN 135 (151)
T ss_dssp HHHHHCC
T ss_pred HHHHhCC
Confidence 8888665
No 36
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=44.07 E-value=48 Score=19.52 Aligned_cols=20 Identities=10% Similarity=0.018 Sum_probs=8.9
Q ss_pred hhcCcccHHHHHHHHHhhCC
Q psy8555 76 CLQNKVTANQTFENYTTRHP 95 (127)
Q Consensus 76 cl~n~~~A~~~f~~y~~~hp 95 (127)
..++...|...+.+..+..|
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~ 100 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP 100 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 34444444444444444433
No 37
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=43.49 E-value=36 Score=21.56 Aligned_cols=78 Identities=10% Similarity=0.019 Sum_probs=37.1
Q ss_pred HhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHHHH
Q psy8555 12 QYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFENYT 91 (127)
Q Consensus 12 ~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y~ 91 (127)
.|...++.+|.....+-.+|.+|+....... --..+...... .|...+. ....|. -+...++...|...+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---A~~~~~~~~~~-~~~~~~~-~~~la~-~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 98 LLIKVAEANPINFNVRFRLGVALDNLGRFDE---AIDSFKIALGL-RPNEGKV-HRAIAF-SYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHhHHHHHHHHHHHHHcCcHHH---HHHHHHHHHhc-CccchHH-HHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 3444444444445555566666665433221 12233333333 2333333 222222 2355667777777777766
Q ss_pred hhCC
Q psy8555 92 TRHP 95 (127)
Q Consensus 92 ~~hp 95 (127)
+..|
T Consensus 172 ~~~~ 175 (186)
T 3as5_A 172 ELDE 175 (186)
T ss_dssp HHHH
T ss_pred HcCC
Confidence 6554
No 38
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=42.93 E-value=11 Score=23.34 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=31.5
Q ss_pred CCCCchhHHHHHHHHHHHHhhcCcccHHHHHHHHHh-hCC
Q psy8555 57 NLSIDIDLNGSWTVVLQYLCLQNKVTANQTFENYTT-RHP 95 (127)
Q Consensus 57 ~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y~~-~hp 95 (127)
.+..|+|- .|..-|..+=..+.....|.++.++.+ ++|
T Consensus 4 ~FT~edD~-~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~ 42 (59)
T 1fex_A 4 AFTDADDV-AILTYVKENARSPSSVTGNALWKAMEKSSLT 42 (59)
T ss_dssp CCCHHHHH-HHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS
T ss_pred CCCHHHHH-HHHHHHHHhccccCCCccHHHHHHHHHhHCC
Confidence 46789999 999999998666667778899999998 665
No 39
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=42.39 E-value=25 Score=21.02 Aligned_cols=82 Identities=11% Similarity=0.138 Sum_probs=49.6
Q ss_pred HHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCc------hhHHHHHHHHHHHHhhcCccc
Q psy8555 9 LCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSID------IDLNGSWTVVLQYLCLQNKVT 82 (127)
Q Consensus 9 L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E------~Dl~~IaqAVLQ~Lcl~n~~~ 82 (127)
-.+.|...++.+|.....+-.+|.+|+.......+ -..+........... .+. ....| .-+..+++...
T Consensus 23 A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A---~~~~~~~~~~~~~~~~~~~~~~~~-~~~la-~~~~~~~~~~~ 97 (131)
T 1elr_A 23 ALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKC---RELCEKAIEVGRENREDYRQIAKA-YARIG-NSYFKEEKYKD 97 (131)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH---HHHHHHHHHHHHHSTTCHHHHHHH-HHHHH-HHHHHTTCHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHH---HHHHHHHHhhccccchhHHHHHHH-HHHHH-HHHHHhccHHH
Confidence 34566777777777778888899999876544321 223333333221111 223 22223 33567899999
Q ss_pred HHHHHHHHHhhCC
Q psy8555 83 ANQTFENYTTRHP 95 (127)
Q Consensus 83 A~~~f~~y~~~hp 95 (127)
|...|.+..+..|
T Consensus 98 A~~~~~~~~~~~~ 110 (131)
T 1elr_A 98 AIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCC
Confidence 9999999988654
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=41.23 E-value=46 Score=23.05 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=44.9
Q ss_pred HHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHH
Q psy8555 9 LCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFE 88 (127)
Q Consensus 9 L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~ 88 (127)
-.+.|...++.+|...+.+-.+|.+|+....... --..+...... .|...+. ....+...+. .++...|...|.
T Consensus 93 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~al~~-~~~~~~~-~~~l~~~~~~-~~~~~~A~~~~~ 166 (272)
T 3u4t_A 93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPL---AIQYMEKQIRP-TTTDPKV-FYELGQAYYY-NKEYVKADSSFV 166 (272)
T ss_dssp HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHH---HHHHHGGGCCS-SCCCHHH-HHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHH---HHHHHHHHhhc-CCCcHHH-HHHHHHHHHH-HHHHHHHHHHHH
Confidence 3456666666677777777788888876543321 11222222222 3444555 4444422222 237777777777
Q ss_pred HHHhhCC
Q psy8555 89 NYTTRHP 95 (127)
Q Consensus 89 ~y~~~hp 95 (127)
+..+..|
T Consensus 167 ~a~~~~p 173 (272)
T 3u4t_A 167 KVLELKP 173 (272)
T ss_dssp HHHHHST
T ss_pred HHHHhCc
Confidence 7777665
No 41
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.24 E-value=41 Score=23.32 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=25.6
Q ss_pred HHHHHHHhh-cCcccHHHHHHHHHhhCCCCCC
Q psy8555 69 TVVLQYLCL-QNKVTANQTFENYTTRHPNIQT 99 (127)
Q Consensus 69 qAVLQ~Lcl-~n~~~A~~~f~~y~~~hp~i~~ 99 (127)
++||++|.. +...+|..+++...+..|+++.
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~ 56 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKFPNMSV 56 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCh
Confidence 578888875 4568999999999999887765
No 42
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=39.87 E-value=77 Score=22.94 Aligned_cols=85 Identities=9% Similarity=0.039 Sum_probs=58.2
Q ss_pred HHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHH
Q psy8555 8 TLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTF 87 (127)
Q Consensus 8 ~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f 87 (127)
.-.+.|...++.+|.....+-.+|..|+....... --..+...... .|...+. ....+.+ +...++...|...|
T Consensus 82 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~-~~~~~~~-~~~l~~~-~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 82 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL---AISALRRCLEL-KPDNQTA-LMALAVS-FTNESLQRQACEIL 155 (368)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH---HHHHHHHHHhc-CCCCHHH-HHHHHHH-HHHcCCHHHHHHHH
Confidence 34466777788888888888899999987654322 12334443333 3556666 5555544 47889999999999
Q ss_pred HHHHhhCCCCC
Q psy8555 88 ENYTTRHPNIQ 98 (127)
Q Consensus 88 ~~y~~~hp~i~ 98 (127)
....+..|...
T Consensus 156 ~~~~~~~~~~~ 166 (368)
T 1fch_A 156 RDWLRYTPAYA 166 (368)
T ss_dssp HHHHHTSTTTG
T ss_pred HHHHHhCcCcH
Confidence 99999887543
No 43
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=39.07 E-value=36 Score=23.12 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=26.0
Q ss_pred HHHHHHHhhc-CcccHHHHHHHHHhhCCCCCC
Q psy8555 69 TVVLQYLCLQ-NKVTANQTFENYTTRHPNIQT 99 (127)
Q Consensus 69 qAVLQ~Lcl~-n~~~A~~~f~~y~~~hp~i~~ 99 (127)
++||++|... ...+|..+++...++.|.++.
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~ 45 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGL 45 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCH
Confidence 5899999754 468999999999999887765
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=38.87 E-value=83 Score=21.08 Aligned_cols=80 Identities=11% Similarity=0.097 Sum_probs=47.4
Q ss_pred HHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHH
Q psy8555 10 CQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFEN 89 (127)
Q Consensus 10 ~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~ 89 (127)
.+.|...++.+|...+.+-.+|.+|+....... --..+....+. .|...+. ....+.. ++..++...|...|.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---A~~~~~~~~~~-~~~~~~~-~~~l~~~-~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 111 KDMFEKALRAGMENGDLFYMLGTVLVKLEQPKL---ALPYLQRAVEL-NENDTEA-RFQFGMC-LANEGMLDEALSQFAA 184 (243)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH---HHHHHHHHHHh-CCccHHH-HHHHHHH-HHHcCCHHHHHHHHHH
Confidence 345555565666666677777777776543322 12233333333 3444444 4444433 4678899999999999
Q ss_pred HHhhCC
Q psy8555 90 YTTRHP 95 (127)
Q Consensus 90 y~~~hp 95 (127)
..+..|
T Consensus 185 ~~~~~~ 190 (243)
T 2q7f_A 185 VTEQDP 190 (243)
T ss_dssp HHHHCT
T ss_pred HHHhCc
Confidence 888765
No 45
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=38.51 E-value=21 Score=22.18 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=17.5
Q ss_pred CCCchhHHHHHHHHHHHHhhcC
Q psy8555 58 LSIDIDLNGSWTVVLQYLCLQN 79 (127)
Q Consensus 58 ~~~E~Dl~~IaqAVLQ~Lcl~n 79 (127)
.|.|.|- .|++||=|.+++|=
T Consensus 2 ~p~~~D~-rl~~al~qMl~MGF 22 (52)
T 1q02_A 2 SPPEADP-RLIESLSQMLSMGF 22 (52)
T ss_dssp CCTTSCH-HHHHHHHHHHTTTC
T ss_pred CCCCcCh-HHHHHHHHHHHcCC
Confidence 5778888 89999999888873
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=38.44 E-value=84 Score=21.43 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=13.7
Q ss_pred HhhcCcccHHHHHHHHHhhCC
Q psy8555 75 LCLQNKVTANQTFENYTTRHP 95 (127)
Q Consensus 75 Lcl~n~~~A~~~f~~y~~~hp 95 (127)
...++...|...+.+..+..|
T Consensus 220 ~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 220 KVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHccCHHHHHHHHHHHHHHCC
Confidence 456666777777777766554
No 47
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=38.42 E-value=78 Score=21.57 Aligned_cols=83 Identities=6% Similarity=-0.052 Sum_probs=54.8
Q ss_pred HHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCch-------hHHHHHHHHHHHHhhcC
Q psy8555 7 NTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDI-------DLNGSWTVVLQYLCLQN 79 (127)
Q Consensus 7 r~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~-------Dl~~IaqAVLQ~Lcl~n 79 (127)
..-.+.|...++.+|...+.+-.+|.+|+....... --..+....+. .|... +. ....+... ..+++
T Consensus 59 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~---A~~~~~~al~~-~p~~~~~~~~~~~~-~~~~g~~~-~~~~~ 132 (228)
T 4i17_A 59 KEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQE---YIATLTEGIKA-VPGNATIEKLYAIY-YLKEGQKF-QQAGN 132 (228)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-STTCHHHHHHHHHH-HHHHHHHH-HHTTC
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHH---HHHHHHHHHHH-CCCcHHHHHHHHHH-HHHHhHHH-HHhcc
Confidence 344567888888899999999999999987654432 12334444433 34433 33 34444443 67889
Q ss_pred cccHHHHHHHHHhhCC
Q psy8555 80 KVTANQTFENYTTRHP 95 (127)
Q Consensus 80 ~~~A~~~f~~y~~~hp 95 (127)
...|...|....+..|
T Consensus 133 ~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 133 IEKAEENYKHATDVTS 148 (228)
T ss_dssp HHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999998888655
No 48
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.35 E-value=47 Score=23.25 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=26.0
Q ss_pred HHHHHHHhhc--CcccHHHHHHHHHhhCCCCCC
Q psy8555 69 TVVLQYLCLQ--NKVTANQTFENYTTRHPNIQT 99 (127)
Q Consensus 69 qAVLQ~Lcl~--n~~~A~~~f~~y~~~hp~i~~ 99 (127)
++||.+|... ...+|..+++...++.|.++.
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~ 52 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLGEEIGL 52 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCH
Confidence 5899988754 578999999999999887765
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=37.53 E-value=53 Score=22.71 Aligned_cols=86 Identities=7% Similarity=-0.032 Sum_probs=51.9
Q ss_pred HHHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHH--HHHHHHHHHHhhcCcccH
Q psy8555 6 FNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLN--GSWTVVLQYLCLQNKVTA 83 (127)
Q Consensus 6 Fr~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~--~IaqAVLQ~Lcl~n~~~A 83 (127)
|..-.+.|...++.+|...+.+-.+|..|+....... --..+....... ...+.. ....-..-+..+++...|
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~---A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A 93 (272)
T 3u4t_A 19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDL---AQKDIETYFSKV--NATKAKSADFEYYGKILMKKGQDSLA 93 (272)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHH---HHHHHHHHHTTS--CTTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHH---HHHHHHHHHhcc--CchhHHHHHHHHHHHHHHHcccHHHH
Confidence 3445567777788888777788888888887654432 123444444422 222210 011222334677888899
Q ss_pred HHHHHHHHhhCCC
Q psy8555 84 NQTFENYTTRHPN 96 (127)
Q Consensus 84 ~~~f~~y~~~hp~ 96 (127)
...|....+..|.
T Consensus 94 ~~~~~~a~~~~~~ 106 (272)
T 3u4t_A 94 IQQYQAAVDRDTT 106 (272)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HHHHHHHHhcCcc
Confidence 9999888887763
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=37.33 E-value=72 Score=22.19 Aligned_cols=84 Identities=11% Similarity=-0.000 Sum_probs=56.2
Q ss_pred HHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhh---------
Q psy8555 7 NTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCL--------- 77 (127)
Q Consensus 7 r~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl--------- 77 (127)
..-...|...++.+|...+.+-.+|..|+....... --..+-..... .|...+. ....+.+. ...
T Consensus 22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~---A~~~~~~al~~-~P~~~~a-~~~lg~~~-~~~~~~~~~~~~ 95 (217)
T 2pl2_A 22 DAALTLFERALKENPQDPEALYWLARTQLKLGLVNP---ALENGKTLVAR-TPRYLGG-YMVLSEAY-VALYRQAEDRER 95 (217)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHHH-HHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHh-CCCcHHH-HHHHHHHH-HHhhhhhhhhcc
Confidence 344577888899999999999999999987554321 12233333332 3555555 44444433 445
Q ss_pred --cCcccHHHHHHHHHhhCCC
Q psy8555 78 --QNKVTANQTFENYTTRHPN 96 (127)
Q Consensus 78 --~n~~~A~~~f~~y~~~hp~ 96 (127)
++...|...|....+..|.
T Consensus 96 ~~g~~~~A~~~~~~al~~~P~ 116 (217)
T 2pl2_A 96 GKGYLEQALSVLKDAERVNPR 116 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT
T ss_pred cccCHHHHHHHHHHHHHhCcc
Confidence 8899999999999997763
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=36.50 E-value=80 Score=21.66 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=11.1
Q ss_pred HhhcCcccHHHHHHHHHhhCC
Q psy8555 75 LCLQNKVTANQTFENYTTRHP 95 (127)
Q Consensus 75 Lcl~n~~~A~~~f~~y~~~hp 95 (127)
..+++...|...|.+..+..|
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~ 142 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDP 142 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhccHHHHHHHHHHHHHhCC
Confidence 445555555555555555443
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=35.61 E-value=93 Score=20.39 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=13.7
Q ss_pred HHhhhhccCCccHHHHHHHHHHHhcCC
Q psy8555 11 QQYQTSIKRDPAYSDYLNKIGHIFFGI 37 (127)
Q Consensus 11 ~~Y~~sl~rd~~~~~~L~~IGe~yFgI 37 (127)
+.|...++.+|.....+-.+|.+|+..
T Consensus 63 ~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 63 ESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 344444444454455555556666544
No 53
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.26 E-value=45 Score=23.33 Aligned_cols=31 Identities=10% Similarity=0.152 Sum_probs=26.1
Q ss_pred HHHHHHHhhc-CcccHHHHHHHHHhhCCCCCC
Q psy8555 69 TVVLQYLCLQ-NKVTANQTFENYTTRHPNIQT 99 (127)
Q Consensus 69 qAVLQ~Lcl~-n~~~A~~~f~~y~~~hp~i~~ 99 (127)
++||++|... ...+|..+++...++.|+++.
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~ 61 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSI 61 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCH
Confidence 5799988754 578999999999999987765
No 54
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=34.74 E-value=95 Score=20.24 Aligned_cols=82 Identities=7% Similarity=0.074 Sum_probs=53.2
Q ss_pred HHHHhhhhccCCccHHHHHHHHHHH-hcCCCCC--CCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHH
Q psy8555 9 LCQQYQTSIKRDPAYSDYLNKIGHI-FFGIQPA--RPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQ 85 (127)
Q Consensus 9 L~~~Y~~sl~rd~~~~~~L~~IGe~-yFgI~~p--r~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~ 85 (127)
-.+.|...++.+|.....+-.+|.. |+..... .. .-..+...... .|...+. ...-|+. +.-.++...|..
T Consensus 63 A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~---A~~~~~~al~~-~p~~~~~-~~~la~~-~~~~g~~~~A~~ 136 (177)
T 2e2e_A 63 SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ---TRAMIDKALAL-DSNEITA-LMLLASD-AFMQANYAQAIE 136 (177)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH---HHHHHHHHHHh-CCCcHHH-HHHHHHH-HHHcccHHHHHH
Confidence 3456666776677777788888988 7765543 21 12334444433 3555555 4444443 467899999999
Q ss_pred HHHHHHhhCCC
Q psy8555 86 TFENYTTRHPN 96 (127)
Q Consensus 86 ~f~~y~~~hp~ 96 (127)
.|....+..|.
T Consensus 137 ~~~~al~~~p~ 147 (177)
T 2e2e_A 137 LWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHTCCT
T ss_pred HHHHHHhhCCC
Confidence 99999998774
No 55
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=34.36 E-value=78 Score=20.78 Aligned_cols=82 Identities=12% Similarity=0.011 Sum_probs=59.2
Q ss_pred HHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHH
Q psy8555 9 LCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFE 88 (127)
Q Consensus 9 L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~ 88 (127)
-.+.|+..+..+|......=.||.+|+....... --..+....+. .|...+. ....+.+. ..+++...|...|.
T Consensus 16 ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~---A~~~~~~al~~-~p~~~~a-~~~lg~~~-~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 16 YIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDL---AKKYICTYINV-QERDPKA-HRFLGLLY-ELEENTDKAVECYR 89 (150)
T ss_dssp HHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHh-CCCCHHH-HHHHHHHH-HHcCchHHHHHHHH
Confidence 3477888888888888777789999998765432 12344444433 4666776 66666554 67899999999999
Q ss_pred HHHhhCCC
Q psy8555 89 NYTTRHPN 96 (127)
Q Consensus 89 ~y~~~hp~ 96 (127)
...+..|.
T Consensus 90 ~al~~~p~ 97 (150)
T 4ga2_A 90 RSVELNPT 97 (150)
T ss_dssp HHHHHCTT
T ss_pred HHHHhCCC
Confidence 99998763
No 56
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.24 E-value=56 Score=23.31 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=25.8
Q ss_pred HHHHHHHhhc-CcccHHHHHHHHHhh--CCCCCC
Q psy8555 69 TVVLQYLCLQ-NKVTANQTFENYTTR--HPNIQT 99 (127)
Q Consensus 69 qAVLQ~Lcl~-n~~~A~~~f~~y~~~--hp~i~~ 99 (127)
++||.+|... ...+|..+++...++ .|+++.
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~ 69 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGI 69 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCH
Confidence 6788888764 678999999999998 887765
No 57
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=33.53 E-value=71 Score=23.71 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=14.8
Q ss_pred HhhcCcccHHHHHHHHHhhCCC
Q psy8555 75 LCLQNKVTANQTFENYTTRHPN 96 (127)
Q Consensus 75 Lcl~n~~~A~~~f~~y~~~hp~ 96 (127)
...++...|...|.+..+..|.
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCC
Confidence 5567777777777777766553
No 58
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=33.47 E-value=71 Score=22.45 Aligned_cols=81 Identities=11% Similarity=0.054 Sum_probs=49.4
Q ss_pred HHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHHH
Q psy8555 11 QQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFENY 90 (127)
Q Consensus 11 ~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y 90 (127)
+.|...++.+|.....+..+|.+|+....... --..+...... .|...+. ....+.+ ++.+++...|...|.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~a~~~-~~~~~~~-~~~l~~~-~~~~g~~~~A~~~~~~a 266 (327)
T 3cv0_A 193 ANLRRAVELRPDDAQLWNKLGATLANGNRPQE---ALDAYNRALDI-NPGYVRV-MYNMAVS-YSNMSQYDLAAKQLVRA 266 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHc-CCCCHHH-HHHHHHH-HHHhccHHHHHHHHHHH
Confidence 44555555566666677777777776543322 12233333333 3444554 4444444 46789999999999999
Q ss_pred HhhCCCC
Q psy8555 91 TTRHPNI 97 (127)
Q Consensus 91 ~~~hp~i 97 (127)
.+..|..
T Consensus 267 ~~~~~~~ 273 (327)
T 3cv0_A 267 IYMQVGG 273 (327)
T ss_dssp HHHHTTS
T ss_pred HHhCCcc
Confidence 9988764
No 59
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=33.26 E-value=98 Score=22.61 Aligned_cols=85 Identities=9% Similarity=0.040 Sum_probs=52.6
Q ss_pred HHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHH
Q psy8555 9 LCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFE 88 (127)
Q Consensus 9 L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~ 88 (127)
-.+.|...++.+|.....+..+|..|+....... --..+...... .|...+. ...-+.+ +..+|+...|...|.
T Consensus 232 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~-~p~~~~~-~~~l~~~-~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 232 AIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE---AVEAYTRALEI-QPGFIRS-RYNLGIS-CINLGAYREAVSNFL 305 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhc-CCCchHH-HHHHHHH-HHHCCCHHHHHHHHH
Confidence 3455666666667777777778888876543321 12233333333 3554555 4444443 477899999999999
Q ss_pred HHHhhCCCCCC
Q psy8555 89 NYTTRHPNIQT 99 (127)
Q Consensus 89 ~y~~~hp~i~~ 99 (127)
+..+..|+...
T Consensus 306 ~al~~~~~~~~ 316 (365)
T 4eqf_A 306 TALSLQRKSRN 316 (365)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHhCcccCC
Confidence 99999887654
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=33.03 E-value=1e+02 Score=20.08 Aligned_cols=79 Identities=13% Similarity=0.089 Sum_probs=41.1
Q ss_pred HHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHHH
Q psy8555 11 QQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFENY 90 (127)
Q Consensus 11 ~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y 90 (127)
+.+...+..+|........+|..++....... ....+.... +..|...+. ....+.. +..+++...|...|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---a~~~~~~a~-~~~~~~~~~-~~~lg~~-~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 60 ESLKKFVVLDTTSAEAYYILGSANFMIDEKQA---AIDALQRAI-ALNTVYADA-YYKLGLV-YDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHH-HHCTTCHHH-HHHHHHH-HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHcCCHHH---HHHHHHHHH-HhCccchHH-HHHHHHH-HHHhCCchhHHHHHHHH
Confidence 34444455555555666666666655443321 112222222 223444555 4444443 35677777788887777
Q ss_pred HhhCC
Q psy8555 91 TTRHP 95 (127)
Q Consensus 91 ~~~hp 95 (127)
.+.+|
T Consensus 134 l~~~p 138 (184)
T 3vtx_A 134 ISIKP 138 (184)
T ss_dssp HHHCT
T ss_pred HHhcc
Confidence 77665
No 61
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=33.01 E-value=1e+02 Score=20.69 Aligned_cols=65 Identities=6% Similarity=-0.089 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHHHHhhCC
Q psy8555 25 DYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFENYTTRHP 95 (127)
Q Consensus 25 ~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y~~~hp 95 (127)
..+-.+|..|+....... .-..+...... .|...+. ....|... ..+++...|...|....+..|
T Consensus 89 ~~~~~la~~~~~~~~~~~---A~~~~~~al~~-~p~~~~~-~~~lg~~~-~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPK---AIDHASKVLKI-DKNNVKA-LYKLGVAN-MYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-STTCHHH-HHHHHHHH-HHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCHHH---HHHHHHHHHHh-CcccHHH-HHHHHHHH-HHcccHHHHHHHHHHHHHHCC
Confidence 667778888887654322 11233333332 4555666 55555554 789999999999999998776
No 62
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=32.71 E-value=86 Score=25.41 Aligned_cols=85 Identities=14% Similarity=0.105 Sum_probs=56.9
Q ss_pred HHHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHH
Q psy8555 6 FNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQ 85 (127)
Q Consensus 6 Fr~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~ 85 (127)
|..-.+.|...++.+|....++..+|..|+....... --..+...... .|...+. ....|.. +..+++...|..
T Consensus 22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~l-~p~~~~~-~~~lg~~-~~~~g~~~eA~~ 95 (477)
T 1wao_1 22 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGY---ALGDATRAIEL-DKKYIKG-YYRRAAS-NMALGKFRAALR 95 (477)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHS-CTTCHHH-HHHHHHH-HHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHh-CCCCHHH-HHHHHHH-HHHcCCHHHHHH
Confidence 3445577888888888888889999999987654432 12233333333 4555555 4444544 477899999999
Q ss_pred HHHHHHhhCCC
Q psy8555 86 TFENYTTRHPN 96 (127)
Q Consensus 86 ~f~~y~~~hp~ 96 (127)
.|.+..+.+|.
T Consensus 96 ~~~~al~~~p~ 106 (477)
T 1wao_1 96 DYETVVKVKPH 106 (477)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHHhCCC
Confidence 99998887764
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=31.83 E-value=63 Score=23.79 Aligned_cols=85 Identities=12% Similarity=0.091 Sum_probs=59.4
Q ss_pred HHHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHH
Q psy8555 6 FNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQ 85 (127)
Q Consensus 6 Fr~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~ 85 (127)
|..-.+.|...++.+|....++..+|..|+....... .-..+....+ ..|...+. ....|... ..+++...|..
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~-~~p~~~~~-~~~lg~~~-~~~g~~~~A~~ 93 (281)
T 2c2l_A 20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQ---ALADCRRALE-LDGQSVKA-HFFLGQCQ-LEMESYDEAIA 93 (281)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHTT-SCTTCHHH-HHHHHHHH-HHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHH---HHHHHHHHHH-hCCCCHHH-HHHHHHHH-HHcCCHHHHHH
Confidence 3445577888888899888999999999997654422 1222333333 34666666 55556554 68899999999
Q ss_pred HHHHHHhhCCC
Q psy8555 86 TFENYTTRHPN 96 (127)
Q Consensus 86 ~f~~y~~~hp~ 96 (127)
.|....+..|.
T Consensus 94 ~~~~al~l~p~ 104 (281)
T 2c2l_A 94 NLQRAYSLAKE 104 (281)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhCcc
Confidence 99998887773
No 64
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=31.44 E-value=62 Score=24.71 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=38.3
Q ss_pred cCCccHHHHHHHHHHHhcCCCC-------CCCC----------CchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhh
Q psy8555 18 KRDPAYSDYLNKIGHIFFGIQP-------ARPA----------APAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCL 77 (127)
Q Consensus 18 ~rd~~~~~~L~~IGe~yFgI~~-------pr~~----------np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl 77 (127)
.-|..|-+++-+||....-|+. |... +|+...+..+..+.-.++.+..-+.||+.+.|.+
T Consensus 104 ~YD~~Yl~~r~rIGlvHvRI~k~~~dGV~~~~~i~~ry~ia~i~~i~~~i~~~l~~~~~~~~~~~~~~~A~~K~~~l 180 (195)
T 2veb_A 104 SYDQAWLDYQYEIGLRHHRTKKNQTDNVESVPNIGYRYLVAFIYPITATMKPFLARKGHTPEEVEKMYQAWFKATTL 180 (195)
T ss_dssp CCSHHHHHHHHHHHHHHSTTTTTTTTTCCCCSCCCHHHHHHTHHHHHHTTHHHHTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcccccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3568899999999999997721 1111 1133445566666655566655577787776654
No 65
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.07 E-value=64 Score=19.64 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=25.3
Q ss_pred HHHHHHHhhc--CcccHHHHHHHHHhhCCCCCC
Q psy8555 69 TVVLQYLCLQ--NKVTANQTFENYTTRHPNIQT 99 (127)
Q Consensus 69 qAVLQ~Lcl~--n~~~A~~~f~~y~~~hp~i~~ 99 (127)
++||.+|... ...+|..+.+...++.|.++.
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~ 52 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGL 52 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCH
Confidence 5789988765 578999999999998876654
No 66
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=31.07 E-value=1.2e+02 Score=20.32 Aligned_cols=78 Identities=12% Similarity=-0.016 Sum_probs=46.0
Q ss_pred HhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHHHH
Q psy8555 12 QYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFENYT 91 (127)
Q Consensus 12 ~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y~ 91 (127)
.|...++.+|......-.+|..|+....... --..+....+. .|...+. ....|.. ++.+++...|...|.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---A~~~~~~a~~~-~~~~~~~-~~~l~~~-~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 127 KAEAEAYVNPEKAEEARLEGKEYFTKSDWPN---AVKAYTEMIKR-APEDARG-YSNRAAA-LAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHhcCHHH---HHHHHHHHHhc-CcccHHH-HHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 4444455677777777888888876654322 12333333333 2444444 4444443 366788888888888887
Q ss_pred hhCC
Q psy8555 92 TRHP 95 (127)
Q Consensus 92 ~~hp 95 (127)
+..|
T Consensus 201 ~~~~ 204 (258)
T 3uq3_A 201 EKDP 204 (258)
T ss_dssp HHCT
T ss_pred HhCH
Confidence 7654
No 67
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=31.01 E-value=87 Score=21.04 Aligned_cols=86 Identities=10% Similarity=0.055 Sum_probs=57.5
Q ss_pred HHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHH
Q psy8555 8 TLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTF 87 (127)
Q Consensus 8 ~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f 87 (127)
.-.+.|...++.+|.....+-.+|.+|+....... --..+...... .|...+. ....|.. +..+++...|...|
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~al~~-~~~~~~~-~~~l~~~-~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE---AIADCNKAIEK-DPNFVRA-YIRKATA-QIAVKEYASALETL 230 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHh-CHHHHHH-HHHHHHH-HHHHhhHHHHHHHH
Confidence 34466777777778778888899999986654322 12334444433 3555665 5555544 36789999999999
Q ss_pred HHHHhhCCCCCC
Q psy8555 88 ENYTTRHPNIQT 99 (127)
Q Consensus 88 ~~y~~~hp~i~~ 99 (127)
....+..|+...
T Consensus 231 ~~a~~~~~~~~~ 242 (258)
T 3uq3_A 231 DAARTKDAEVNN 242 (258)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHhChhhcC
Confidence 999998865544
No 68
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=30.53 E-value=42 Score=18.34 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=17.3
Q ss_pred HHhhhhccCCccHHHHHHHHHH
Q psy8555 11 QQYQTSIKRDPAYSDYLNKIGH 32 (127)
Q Consensus 11 ~~Y~~sl~rd~~~~~~L~~IGe 32 (127)
++-..-|.|-|+|.+-|+.++-
T Consensus 4 ~krr~iL~rrpSYrkIlndls~ 25 (28)
T 1kdx_B 4 QKRREILSRRPSYRKILNDLSS 25 (28)
T ss_dssp HHHHHHHTTSTHHHHHHHHHHH
T ss_pred hhhhhhhhcCchHHHHHHhhcc
Confidence 3445667899999999999873
No 69
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=30.04 E-value=79 Score=22.38 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=56.0
Q ss_pred HHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHH
Q psy8555 8 TLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTF 87 (127)
Q Consensus 8 ~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f 87 (127)
.-.+.|...++.+|...+.+-.+|..|+....... --..+....+. .|...+. ....|.+ +...++...|...|
T Consensus 21 ~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~~~~~-~~~~~~~-~~~l~~~-~~~~~~~~~A~~~~ 94 (359)
T 3ieg_A 21 DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKA---ALPDLTKVIAL-KMDFTAA-RLQRGHL-LLKQGKLDEAEDDF 94 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHH---HHHHHHHHHHh-CCCcchH-HHHHHHH-HHHcCChHHHHHHH
Confidence 34466777777788888889999999987665432 22344444443 4555555 4444444 47789999999999
Q ss_pred HHHHhhCC
Q psy8555 88 ENYTTRHP 95 (127)
Q Consensus 88 ~~y~~~hp 95 (127)
.+..+..|
T Consensus 95 ~~~~~~~~ 102 (359)
T 3ieg_A 95 KKVLKSNP 102 (359)
T ss_dssp HHHHTSCC
T ss_pred HHHHhcCC
Confidence 99988655
No 70
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=29.82 E-value=1.2e+02 Score=21.28 Aligned_cols=83 Identities=12% Similarity=0.042 Sum_probs=54.6
Q ss_pred HHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHH
Q psy8555 9 LCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFE 88 (127)
Q Consensus 9 L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~ 88 (127)
-.+.|...++.+|...+.+-.+|..|+....... --..+...... .|...+. ....|. -+...++...|...+.
T Consensus 40 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~a~~~-~~~~~~~-~~~la~-~~~~~~~~~~A~~~~~ 113 (327)
T 3cv0_A 40 AALAFEAVCQAAPEREEAWRSLGLTQAENEKDGL---AIIALNHARML-DPKDIAV-HAALAV-SHTNEHNANAALASLR 113 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHH-HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhc-CcCCHHH-HHHHHH-HHHHcCCHHHHHHHHH
Confidence 3455666677777777888888998886644322 12334444333 4555555 444443 3578899999999999
Q ss_pred HHHhhCCCC
Q psy8555 89 NYTTRHPNI 97 (127)
Q Consensus 89 ~y~~~hp~i 97 (127)
...+..|..
T Consensus 114 ~~~~~~~~~ 122 (327)
T 3cv0_A 114 AWLLSQPQY 122 (327)
T ss_dssp HHHHTSTTT
T ss_pred HHHHhCCcc
Confidence 999887754
No 71
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=29.75 E-value=1e+02 Score=20.89 Aligned_cols=79 Identities=9% Similarity=-0.088 Sum_probs=57.9
Q ss_pred HhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHHHH
Q psy8555 12 QYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFENYT 91 (127)
Q Consensus 12 ~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y~ 91 (127)
.|+..++.+|...+.+-.+|..|+....... --..|...... .|...+. ....++.. ..+++...|...|....
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~e---A~~~~~~al~~-~P~~~~~-~~~lg~~~-~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEE---AEVFFRFLCIY-DFYNVDY-IMGLAAIY-QIKEQFQQAADLYAVAF 97 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHh-CCCCHHH-HHHHHHHH-HHHccHHHHHHHHHHHH
Confidence 4677888899999999999999997665432 12344443333 5677777 66656554 67899999999999999
Q ss_pred hhCCC
Q psy8555 92 TRHPN 96 (127)
Q Consensus 92 ~~hp~ 96 (127)
+..|.
T Consensus 98 ~l~P~ 102 (151)
T 3gyz_A 98 ALGKN 102 (151)
T ss_dssp HHSSS
T ss_pred hhCCC
Confidence 98874
No 72
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=29.31 E-value=62 Score=21.51 Aligned_cols=87 Identities=10% Similarity=-0.059 Sum_probs=48.8
Q ss_pred HHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCC------------CCc-hhhhhHHH--hh---------------cC
Q psy8555 8 TLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARP------------AAP-AGGLFGTE--YD---------------LN 57 (127)
Q Consensus 8 ~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~------------~np-~~~m~g~~--~~---------------k~ 57 (127)
.-.+.|...++.+|...+++-.+|.+|........ ++| ...+.+.+ .+ ..
T Consensus 24 ~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 103 (176)
T 2r5s_A 24 QALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAA 103 (176)
T ss_dssp HHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHh
Confidence 34456777777777777777777777764432110 012 11111111 11 11
Q ss_pred CCCchhHHHHHHHHHHHHhhcCcccHHHHHHHHHhhCCC
Q psy8555 58 LSIDIDLNGSWTVVLQYLCLQNKVTANQTFENYTTRHPN 96 (127)
Q Consensus 58 ~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y~~~hp~ 96 (127)
.|...+. ...-+.+ +...|+...|...|.+..+.+|.
T Consensus 104 ~P~~~~~-~~~la~~-~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 104 NPDNFEL-ACELAVQ-YNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp STTCHHH-HHHHHHH-HHHTTCHHHHHHHHHHHHTTCTT
T ss_pred CCCCHHH-HHHHHHH-HHHcccHHHHHHHHHHHHHhCcc
Confidence 3444555 4444444 36788889999999988887763
No 73
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=28.92 E-value=1.3e+02 Score=19.96 Aligned_cols=84 Identities=11% Similarity=0.031 Sum_probs=53.2
Q ss_pred HHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCC---------------CchhHHHHHHHHH
Q psy8555 8 TLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLS---------------IDIDLNGSWTVVL 72 (127)
Q Consensus 8 ~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~---------------~E~Dl~~IaqAVL 72 (127)
.-.+.|...++.+|.....+-.+|.+|+....... --..+......... ...+. ....|..
T Consensus 55 ~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~---A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 130 (213)
T 1hh8_A 55 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL---AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV-LYNIAFM 130 (213)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHH---HHHHHHHHHHhCCCccHHHHHHhccccCccchHH-HHHHHHH
Confidence 34466777777788888888899999987654432 12233333332211 11244 4444444
Q ss_pred HHHhhcCcccHHHHHHHHHhhCCC
Q psy8555 73 QYLCLQNKVTANQTFENYTTRHPN 96 (127)
Q Consensus 73 Q~Lcl~n~~~A~~~f~~y~~~hp~ 96 (127)
+..+++...|...|....+..|.
T Consensus 131 -~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 131 -YAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp -HHHTTCHHHHHHHHHHHHTTCCS
T ss_pred -HHHccCHHHHHHHHHHHHHcCcc
Confidence 47789999999999999988773
No 74
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=28.61 E-value=85 Score=22.96 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=58.0
Q ss_pred HHHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHH
Q psy8555 7 NTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQT 86 (127)
Q Consensus 7 r~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~ 86 (127)
..-.+.|...++.+|.....+-.+|.+|+....... --..+...... .|...+. ....+.+ +..+++...|...
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~-~p~~~~~-~~~l~~~-~~~~g~~~~A~~~ 155 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQA---AIVALQRCLEL-QPNNLKA-LMALAVS-YTNTSHQQDACEA 155 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHHH-HHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHhc-CCCCHHH-HHHHHHH-HHccccHHHHHHH
Confidence 344567778888888888999999999997654432 22344444443 3454555 4444443 4788999999999
Q ss_pred HHHHHhhCCC
Q psy8555 87 FENYTTRHPN 96 (127)
Q Consensus 87 f~~y~~~hp~ 96 (127)
|.+..+..|.
T Consensus 156 ~~~al~~~p~ 165 (365)
T 4eqf_A 156 LKNWIKQNPK 165 (365)
T ss_dssp HHHHHHHCHH
T ss_pred HHHHHHhCcc
Confidence 9999998774
No 75
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=28.34 E-value=1.2e+02 Score=19.98 Aligned_cols=80 Identities=6% Similarity=-0.144 Sum_probs=57.7
Q ss_pred HHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHH
Q psy8555 10 CQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFEN 89 (127)
Q Consensus 10 ~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~ 89 (127)
.+.|+..++.+|...+.+-.+|..|+....... --..+..... ..|...+. ....++.. ..+++...|...|..
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~---A~~~~~~al~-~~p~~~~~-~~~lg~~~-~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYED---AHXVFQALCV-LDHYDSRF-FLGLGACR-QAMGQYDLAIHSYSY 80 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHH-HCTTCHHH-HHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHH---HHHHHHHHHH-cCcccHHH-HHHHHHHH-HHHhhHHHHHHHHHH
Confidence 456788889999999999999999997654432 1233443333 34666776 55555544 678999999999999
Q ss_pred HHhhCC
Q psy8555 90 YTTRHP 95 (127)
Q Consensus 90 y~~~hp 95 (127)
..+..|
T Consensus 81 al~l~p 86 (148)
T 2vgx_A 81 GAVMDI 86 (148)
T ss_dssp HHHHST
T ss_pred HHhcCC
Confidence 999776
No 76
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=28.31 E-value=1.4e+02 Score=20.23 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=8.3
Q ss_pred hhcCcccHHHHHHHHHhh
Q psy8555 76 CLQNKVTANQTFENYTTR 93 (127)
Q Consensus 76 cl~n~~~A~~~f~~y~~~ 93 (127)
..++...|...|.+..+.
T Consensus 153 ~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 344444444444444443
No 77
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=27.47 E-value=1.6e+02 Score=20.57 Aligned_cols=83 Identities=11% Similarity=-0.006 Sum_probs=48.1
Q ss_pred HHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcC--------CCCchhHHHHHHHHHHHHhhcCc
Q psy8555 9 LCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLN--------LSIDIDLNGSWTVVLQYLCLQNK 80 (127)
Q Consensus 9 L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~--------~~~E~Dl~~IaqAVLQ~Lcl~n~ 80 (127)
-.+.|...++.+|.....+-.+|.+|+....... --..+....+.. .+...+. ....|.+ +..+++.
T Consensus 178 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~la~~-~~~~g~~ 252 (330)
T 3hym_B 178 AERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKT---AEKWFLDALEKIKAIGNEVTVDKWEPL-LNNLGHV-CRKLKKY 252 (330)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHHTTTSCSCTTTTCCHH-HHHHHHH-HHHTTCH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHH---HHHHHHHHHHHhhhccccccccHHHHH-HHHHHHH-HHHhcCH
Confidence 3456666777777777777788888875543321 112233222221 0222334 3444443 4677888
Q ss_pred ccHHHHHHHHHhhCCC
Q psy8555 81 VTANQTFENYTTRHPN 96 (127)
Q Consensus 81 ~~A~~~f~~y~~~hp~ 96 (127)
..|...|.+..+..|.
T Consensus 253 ~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ 268 (330)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhhCcc
Confidence 8888888888887653
No 78
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=27.44 E-value=95 Score=22.74 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=20.5
Q ss_pred CchhHHHHHHHHHHHHhhcCcccHHHHHHHHHhhCC
Q psy8555 60 IDIDLNGSWTVVLQYLCLQNKVTANQTFENYTTRHP 95 (127)
Q Consensus 60 ~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y~~~hp 95 (127)
...++ .++.|.+.+-++++...|..+|+...+.+|
T Consensus 166 ~~~~~-~~~~a~~~~~~~~~~~~A~~~~~~al~~~p 200 (308)
T 2ond_A 166 TRHHV-YVTAALMEYYCSKDKSVAFKIFELGLKKYG 200 (308)
T ss_dssp CCTHH-HHHHHHHHHHTSCCHHHHHHHHHHHHHHHT
T ss_pred CCHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33455 555555554456666666666666666555
No 79
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=27.01 E-value=1.6e+02 Score=22.02 Aligned_cols=80 Identities=8% Similarity=-0.091 Sum_probs=52.0
Q ss_pred HHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHH
Q psy8555 10 CQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFEN 89 (127)
Q Consensus 10 ~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~ 89 (127)
.+.|...++.+|.....+-.+|.+|........ .-..+...... .|...+. ....+. -+...++...|...|.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~-~~~~~~~-~~~l~~-~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRK---AISDLKAASKL-KNDNTEA-FYKIST-LYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGG---GHHHHHHHHHH-HCSCHHH-HHHHHH-HHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHH---HHHHHHHHHHh-CCCCHHH-HHHHHH-HHHHcCCHHHHHHHHHH
Confidence 345556666667777778888888887655433 12344444433 3444555 444444 34778999999999999
Q ss_pred HHhhCC
Q psy8555 90 YTTRHP 95 (127)
Q Consensus 90 y~~~hp 95 (127)
..+..|
T Consensus 237 ~~~~~p 242 (450)
T 2y4t_A 237 CLKLDQ 242 (450)
T ss_dssp HHHHCT
T ss_pred HHHhCC
Confidence 998765
No 80
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=25.87 E-value=2e+02 Score=21.16 Aligned_cols=29 Identities=14% Similarity=0.422 Sum_probs=17.9
Q ss_pred HHhhhhccCCccHHHHHHHHHHHhcCCCC
Q psy8555 11 QQYQTSIKRDPAYSDYLNKIGHIFFGIQP 39 (127)
Q Consensus 11 ~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~ 39 (127)
+.|...++.+|...+.+-.+|.+|.....
T Consensus 190 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 190 HHFEKAVTLDPNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 44555566666666666677777665543
No 81
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=25.70 E-value=92 Score=20.16 Aligned_cols=70 Identities=9% Similarity=0.017 Sum_probs=46.2
Q ss_pred CccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHHHHhhCC
Q psy8555 20 DPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFENYTTRHP 95 (127)
Q Consensus 20 d~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y~~~hp 95 (127)
+|.....+-.+|..|+.......+ -..+...... .|...+. ..-.|... ..+++...|...|....+..|
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A---~~~~~~al~~-~p~~~~a-~~~~g~~~-~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEA---EETSSEVLKR-EETNEKA-LFRRAKAR-IAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHH---HHHHHHHHHH-STTCHHH-HHHHHHHH-HHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHH---HHHHHHHHhc-CCcchHH-HHHHHHHH-HHHhcHHHHHHHHHHHHhcCC
Confidence 566667788888888876544221 1222233332 4566666 55666554 789999999999999999776
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=25.67 E-value=75 Score=22.34 Aligned_cols=66 Identities=9% Similarity=0.096 Sum_probs=35.9
Q ss_pred HHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhh----------cCcccHHHHHHHHHhhCCC
Q psy8555 28 NKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCL----------QNKVTANQTFENYTTRHPN 96 (127)
Q Consensus 28 ~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl----------~n~~~A~~~f~~y~~~hp~ 96 (127)
-.+|.+|+....... --..+....+..-.++...........-+..+ ++...|...|....+.+|.
T Consensus 152 ~~la~~~~~~g~~~~---A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 152 YEAARLYERRELYEA---AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHTTCHHH---HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHccCHHH---HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 566888887654432 23344455444322222111111221122223 7778999999999999873
No 83
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=25.57 E-value=1.7e+02 Score=23.41 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=15.7
Q ss_pred HHHhhhhccCCccHHHHHHHHHHHhcCC
Q psy8555 10 CQQYQTSIKRDPAYSDYLNKIGHIFFGI 37 (127)
Q Consensus 10 ~~~Y~~sl~rd~~~~~~L~~IGe~yFgI 37 (127)
.+.|+..++.+|...+.+-.+|..|+..
T Consensus 43 ~~~~~~al~~~p~~~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 43 EMAVQRGLALHPGHPEAVARLGRVRWTQ 70 (568)
T ss_dssp HHHHHHHHTTSTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3445555555555555556666666544
No 84
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=24.76 E-value=1.5e+02 Score=21.25 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=14.4
Q ss_pred HhhcCcccHHHHHHHHHhhCCCC
Q psy8555 75 LCLQNKVTANQTFENYTTRHPNI 97 (127)
Q Consensus 75 Lcl~n~~~A~~~f~~y~~~hp~i 97 (127)
..+++...|...|....+..|..
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC
Confidence 45666666666666666666544
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=24.59 E-value=73 Score=22.02 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=17.6
Q ss_pred HhhcCcccHHHHHHHHHhhCCC
Q psy8555 75 LCLQNKVTANQTFENYTTRHPN 96 (127)
Q Consensus 75 Lcl~n~~~A~~~f~~y~~~hp~ 96 (127)
+.+++...|...|+...+..|+
T Consensus 168 ~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 168 LFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHccCHHHHHHHHHHHHHhCCC
Confidence 4467888999999999887764
No 86
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=23.89 E-value=1.6e+02 Score=19.42 Aligned_cols=76 Identities=11% Similarity=0.115 Sum_probs=44.8
Q ss_pred HHhhhhccCCccHHHHHHHHHHHhc--CCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHH
Q psy8555 11 QQYQTSIKRDPAYSDYLNKIGHIFF--GIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTF 87 (127)
Q Consensus 11 ~~Y~~sl~rd~~~~~~L~~IGe~yF--gI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f 87 (127)
..+..++...+.+...|.+||...- ||.|.. =..++..+..-++...+...|+...+..++..++..-...+..++
T Consensus 61 ~~~v~~ld~~~~l~~~l~~l~~~H~~~gv~p~~-f~~~~~~ll~~l~~~lg~~~e~~~AW~~~~~~ia~~l~~~~~~~y 138 (140)
T 2wy4_A 61 LMAAKNIENLENMRSFVDKVAITHVNLGVKEEH-YPIVGACLLKAIKNLLNPDEATLKAWEVAYGKIAKFYIDIEKKLY 138 (140)
T ss_dssp HHHHHTTTCGGGGHHHHHHHHHHHHHTTCCGGG-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677788766779999999998864 555442 001455554444443333345534557777777655444555444
No 87
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=23.86 E-value=1.9e+02 Score=20.29 Aligned_cols=80 Identities=10% Similarity=-0.048 Sum_probs=52.0
Q ss_pred HHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHHH
Q psy8555 11 QQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFENY 90 (127)
Q Consensus 11 ~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y 90 (127)
+.|...++.+|...+.+-.+|.+|+....... .-..+...... .|...+. ....|.+ +...++...|...|.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---A~~~~~~~~~~-~~~~~~~-~~~la~~-~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 141 TFLDKILEVCVWDAELRELRAECFIKEGEPRK---AISDLKAASKL-KSDNTEA-FYKISTL-YYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHTT-CSCCHHH-HHHHHHH-HHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHCCCHHH---HHHHHHHHHHh-CCCCHHH-HHHHHHH-HHHcCCHHHHHHHHHHH
Confidence 44555566667667778888888887654432 22334444443 4555555 4444444 46789999999999999
Q ss_pred HhhCCC
Q psy8555 91 TTRHPN 96 (127)
Q Consensus 91 ~~~hp~ 96 (127)
.+..|.
T Consensus 215 ~~~~~~ 220 (359)
T 3ieg_A 215 LKLDQD 220 (359)
T ss_dssp HHHCTT
T ss_pred HhhCcc
Confidence 987763
No 88
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=23.73 E-value=43 Score=22.15 Aligned_cols=32 Identities=9% Similarity=-0.160 Sum_probs=17.6
Q ss_pred HhhcCCCCchhHHHHHHHHHHHHhhcCcccHHH
Q psy8555 53 EYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQ 85 (127)
Q Consensus 53 ~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~ 85 (127)
+-.+|+-+|.|+.-+++.+|++|- .+..+|..
T Consensus 4 ~~~~~~~~d~~~~~~~~~IL~lL~-~~g~sa~e 35 (82)
T 1oyi_A 4 MASKIYIDERSNAEIVCEAIKTIG-IEGATAAQ 35 (82)
T ss_dssp ---------CCSHHHHHHHHHHHS-SSTEEHHH
T ss_pred cccccCccccchHHHHHHHHHHHH-HcCCCHHH
Confidence 346788899999889999999998 45444443
No 89
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=23.11 E-value=1.5e+02 Score=22.20 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=48.2
Q ss_pred HHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHH
Q psy8555 10 CQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFEN 89 (127)
Q Consensus 10 ~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~ 89 (127)
.+.|...++.+|.....+-.+|..|+....... --..+....+. .|...+. ....+. -+..+++...|...|.+
T Consensus 46 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~-~p~~~~~-~~~l~~-~~~~~g~~~~A~~~~~~ 119 (450)
T 2y4t_A 46 LSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKA---ALPDLTKVIQL-KMDFTAA-RLQRGH-LLLKQGKLDEAEDDFKK 119 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCHHH-HHHHHH-HHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHH---HHHHHHHHHhc-CCCcHHH-HHHHHH-HHHHcCCHHHHHHHHHH
Confidence 345555666667667777778888876554322 12333333333 2444444 333333 34678899999999999
Q ss_pred HHhhCC
Q psy8555 90 YTTRHP 95 (127)
Q Consensus 90 y~~~hp 95 (127)
..+..|
T Consensus 120 ~~~~~~ 125 (450)
T 2y4t_A 120 VLKSNP 125 (450)
T ss_dssp HHTSCC
T ss_pred HHhcCC
Confidence 887554
No 90
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=21.90 E-value=1.2e+02 Score=23.31 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=33.9
Q ss_pred HhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHHHHHH
Q psy8555 12 QYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTFENYT 91 (127)
Q Consensus 12 ~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y~ 91 (127)
.|...++.+|...+.+-.+|.+|+....... --..+....+. .|...+. ....|.+. ..+++...|...|.+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~a~~~-~~~~~~~-~~~la~~~-~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKN---AKEDFQKAQSL-NPENVYP-YIQLACLL-YKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-CTTCSHH-HHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHh-CCCCHHH-HHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 3444444444445555555555554332211 11122222221 2333333 33333332 45566666666666666
Q ss_pred hhCC
Q psy8555 92 TRHP 95 (127)
Q Consensus 92 ~~hp 95 (127)
+.+|
T Consensus 372 ~~~~ 375 (537)
T 3fp2_A 372 LKFP 375 (537)
T ss_dssp HHCT
T ss_pred HhCC
Confidence 6554
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=21.71 E-value=1.7e+02 Score=20.22 Aligned_cols=65 Identities=6% Similarity=-0.102 Sum_probs=34.7
Q ss_pred HHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchh-HHHHHHHHHHHHhhcCcccHHHHHHHHHhhCCCC
Q psy8555 29 KIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDID-LNGSWTVVLQYLCLQNKVTANQTFENYTTRHPNI 97 (127)
Q Consensus 29 ~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~D-l~~IaqAVLQ~Lcl~n~~~A~~~f~~y~~~hp~i 97 (127)
.+|..|+....... --..+....+. +|+... -+....-..-+.-+|+...|...+.......|+-
T Consensus 152 ~~a~~~~~~~~~~~---A~~~~~~~l~~-~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 152 SVAEYYTERGAWVA---VVNRVEGMLRD-YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHTCHHH---HHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHcCcHHH---HHHHHHHHHHH-CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 45666665433221 12233444433 333221 1133344444567888888888888888877743
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=21.68 E-value=1.4e+02 Score=21.79 Aligned_cols=88 Identities=6% Similarity=-0.048 Sum_probs=55.9
Q ss_pred HHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCC------------CCCc-hhhhhHH--Hhh---------------cC
Q psy8555 8 TLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPAR------------PAAP-AGGLFGT--EYD---------------LN 57 (127)
Q Consensus 8 ~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr------------~~np-~~~m~g~--~~~---------------k~ 57 (127)
.-.+.|+..++.+|...+++-.+|.+|.....+. .+++ ...+... +.+ ..
T Consensus 135 ~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~ 214 (287)
T 3qou_A 135 DALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE 214 (287)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc
Confidence 3456788888889999999999998887544321 0111 1111111 111 11
Q ss_pred CCCchhHHHHHHHHHHHHhhcCcccHHHHHHHHHhhCCCC
Q psy8555 58 LSIDIDLNGSWTVVLQYLCLQNKVTANQTFENYTTRHPNI 97 (127)
Q Consensus 58 ~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f~~y~~~hp~i 97 (127)
.|...+. ...-|.+. +..|+...|...+.+..+.+|.-
T Consensus 215 ~P~~~~~-~~~la~~l-~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 215 NPEDAAL-ATQLALQL-HQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp CTTCHHH-HHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTG
T ss_pred CCccHHH-HHHHHHHH-HHcccHHHHHHHHHHHHhccccc
Confidence 4555666 55555544 78899999999999999988754
No 93
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=21.30 E-value=2.8e+02 Score=21.16 Aligned_cols=82 Identities=15% Similarity=0.071 Sum_probs=55.9
Q ss_pred HHHHHhhhhccCCccHHHHHHHHHHHhcCCCCCCCCCchhhhhHHHhhcCCCCchhHHHHHHHHHHHHhhcCcccHHHHH
Q psy8555 8 TLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQNKVTANQTF 87 (127)
Q Consensus 8 ~L~~~Y~~sl~rd~~~~~~L~~IGe~yFgI~~pr~~np~~~m~g~~~~k~~~~E~Dl~~IaqAVLQ~Lcl~n~~~A~~~f 87 (127)
.-.+.|...++.+|. .+.+-.+|..|+....... --..+....+. .|...+. ....+.+. ...++...|...|
T Consensus 261 ~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~-~~~~~~~-~~~l~~~~-~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 261 DAQVLLQESINLHPT-PNSYIFLALTLADKENSQE---FFKFFQKAVDL-NPEYPPT-YYHRGQMY-FILQDYKNAKEDF 333 (537)
T ss_dssp HHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHH---HHHHHHHHHHH-CTTCHHH-HHHHHHHH-HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHH---HHHHHHHHhcc-CCCCHHH-HHHHHHHH-HhcCCHHHHHHHH
Confidence 344667777777888 7788889999987654432 12334444433 3555666 55555544 7889999999999
Q ss_pred HHHHhhCCC
Q psy8555 88 ENYTTRHPN 96 (127)
Q Consensus 88 ~~y~~~hp~ 96 (127)
....+..|.
T Consensus 334 ~~a~~~~~~ 342 (537)
T 3fp2_A 334 QKAQSLNPE 342 (537)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHhCCC
Confidence 999997763
Done!