RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8555
(127 letters)
>gnl|CDD|217953 pfam04190, DUF410, Protein of unknown function (DUF410). This
family of proteins is from Caenorhabditis elegans and
has no known function. The protein has some GO
references indicating that the protein has a positive
regulation of growth rate and is involved in nematode
larval development.
Length = 251
Score = 57.5 bits (139), Expect = 6e-11
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 71 VLQYLCLQNKVTANQTFENYTTRHP------NIQTRGPPYYLPLLNFIWFLLKVIET 121
VLQYLCL+N A +F YT P+ PLLNF+ L I+T
Sbjct: 148 VLQYLCLKNFPFAVSSFTEYTAPFIKKHPKYEKYEAKFPFTYPLLNFLHLLFDTIDT 204
Score = 53.3 bits (128), Expect = 2e-09
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 1 GKLVAFNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGL 49
F L YQ S+KRD A+ YL KIG ++FGI+P P +GGL
Sbjct: 205 KDKAQFLELTSSYQPSLKRDLAFIGYLAKIGQLYFGIRP--PKQTSGGL 251
>gnl|CDD|236251 PRK08375, PRK08375, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 487
Score = 28.7 bits (65), Expect = 0.77
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 13 YQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLF 50
Q +KR AYS ++++G+I G+ P A A GL
Sbjct: 291 GQDDVKRVLAYST-VSQMGYILLGLALLTPLALAAGLL 327
>gnl|CDD|185111 PRK15189, PRK15189, fimbrial protein BcfD; Provisional.
Length = 335
Score = 27.8 bits (61), Expect = 1.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 62 IDLNGSWTVVLQYLCLQNKVTANQTFENYTTRHPNIQTRGPPYYLPL 108
+ L S V +Q +C T +QT+ +Y + +P ++T G YL L
Sbjct: 53 VQLEKSQEVNVQAVCPAGASTYSQTYRSYVSPYPVVETSGNWKYLKL 99
>gnl|CDD|214458 MTH00206, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 450
Score = 26.8 bits (60), Expect = 4.0
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 83 ANQTFENYTTRHPNIQTRGPPYYLPLLNFIWFLL 116
AN +E TR RG LPLL+F W L
Sbjct: 326 ANLLYERSHTRTILG-NRGLQMILPLLSFWWLLF 358
>gnl|CDD|143476 cd07560, Peptidase_S41_CPP, C-terminal processing peptidase;
serine protease family S41. The C-terminal processing
peptidase (CPP, EC 3.4.21.102) also known as
tail-specific protease (tsp), the photosystem II D1
C-terminal processing protease (D1P), and other related
S41 protease family members are present in this CD. CPP
is synthesized as a precursor form with a
carboxyl-terminal extension. It specifically recognizes
a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is
preferably Ala or Leu, Yaa is preferably Ala or Tyr and
Zaa is preferably Ala, but then cleaves at a variable
distance from the C-terminus. The C-terminal
carboxylate group is essential, and proteins where this
group is amidated are not substrates. This family of
proteases contains the PDZ domain that promotes
protein-protein interactions and is important for
substrate recognition. The active site consists of a
serine/lysine catalytic dyad. The bacterial CCP-1 is
believed to be important for the degradation of
incorrectly synthesized proteins as well as protection
from thermal and osmotic stresses. In E. coli, it is
involved in the cleavage of a C-terminal peptide of 11
residues from the precursor form of penicillin-binding
protein 3 (PBP3). In the plant chloroplast, the enzyme
removes the C-terminal extension of the D1 polypeptide
of photosystem II, allowing the light-driven assembly
of the tetranuclear manganese cluster, which is
responsible for photosynthetic water oxidation.
Length = 211
Score = 25.8 bits (58), Expect = 5.5
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query: 20 DPAYSDYLNKIGHI 33
DP YS YL IG+I
Sbjct: 41 DP-YSRYLTPIGYI 53
>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein. Members
of this family confer resistance to the metalloid
element tellurium and its salts.
Length = 98
Score = 25.4 bits (56), Expect = 6.1
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 41 RPAAPAGGLFGTEYDLNLSIDIDL-------NGSWTVV 71
R GG FG+ + N ID+DL +GS VV
Sbjct: 59 RSTQGKGGFFGSLFGANKGIDLDLGCLYELNDGSKGVV 96
>gnl|CDD|217077 pfam02514, CobN-Mg_chel, CobN/Magnesium Chelatase. This family
contains a domain common to the cobN protein and to
magnesium protoporphyrin chelatase. CobN is implicated
in the conversion of hydrogenobyrinic acid a,c-diamide
to cobyrinic acid. Magnesium protoporphyrin chelatase is
involved in chlorophyll biosynthesis.
Length = 1079
Score = 25.6 bits (57), Expect = 9.2
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 31 GHIFFGIQPAR 41
G++F G QP+R
Sbjct: 381 GNVFVGPQPSR 391
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.440
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,472,470
Number of extensions: 544289
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 21
Length of query: 127
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 42
Effective length of database: 7,167,512
Effective search space: 301035504
Effective search space used: 301035504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)