RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8555
         (127 letters)



>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein
           biogenesis, GET PAT GET5 binding, protein transport;
           1.98A {Chaetomium thermophilum}
          Length = 336

 Score = 60.8 bits (147), Expect = 3e-12
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 1   GKLVAFNTLCQQYQTSIKR-DPAYSDYLNKIGHIFFGIQPARPAAPAGGLFG 51
           G    F  L  +Y+ ++   +  +   L  I  ++FGIQ  R + P   + G
Sbjct: 258 GSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQRPRQSNPLLDMMG 309



 Score = 55.0 bits (132), Expect = 4e-10
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 15/65 (23%)

Query: 71  VLQYLCLQNKVTANQTFENYTTRHPNIQTRGPPYY--------------LPLLNFIWFLL 116
           VL YL + N   AN  +  +T+       +G                  LPLLNFI  LL
Sbjct: 194 VLPYLLVANVRAANTAYRIFTSALVEDN-KGLTVQNIGSQSAELRIFPSLPLLNFISMLL 252

Query: 117 KVIET 121
             ++ 
Sbjct: 253 LSVQK 257


>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored
           protein, protein binding GET4; 1.99A {Saccharomyces
           cerevisiae} PDB: 3lku_A
          Length = 312

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 12/69 (17%)

Query: 71  VLQYLCLQNKVTANQTFENYTTR-----HPNIQTRGPPYY-------LPLLNFIWFLLKV 118
           V  YL + N   A+++ + +  R     HP  +      Y          LNF+  LL  
Sbjct: 195 VFNYLFISNISFAHESKDIFLERFIEKFHPKYEKIDKNGYEIVFFEDYSDLNFLQLLLIT 254

Query: 119 IETYTVTLN 127
            +T   +  
Sbjct: 255 CQTKDKSYF 263



 Score = 53.5 bits (128), Expect = 1e-09
 Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 3/51 (5%)

Query: 1   GKLVAFNTLCQQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFG 51
                F  L   Y   +    AY   L  +G  +F I   +       +  
Sbjct: 258 KDKSYFLNLKNHY---LDFSQAYKSELEFLGQEYFNIVAPKQTNFLQDMMS 305


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.1 bits (59), Expect = 2.1
 Identities = 20/77 (25%), Positives = 26/77 (33%), Gaps = 26/77 (33%)

Query: 7   NTLCQ--QYQTSI-KRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDID 63
           NTL Q   Y+  I   DP Y   +N I   F              L   E +L  S   D
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILD-F--------------LPKIEENLICSKYTD 566

Query: 64  LNGSWTVVLQYLCLQNK 80
           L       L+ + L  +
Sbjct: 567 L-------LR-IALMAE 575


>2q1f_A Chondroitinase; alpha plus beta, lyase; 2.85A {Bacteroides
            thetaiotaomicron}
          Length = 1022

 Score = 26.4 bits (57), Expect = 3.6
 Identities = 14/89 (15%), Positives = 23/89 (25%), Gaps = 6/89 (6%)

Query: 20   DPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDIDLNGSWTVVLQYLCLQN 79
             P  + Y       F         +     +       + + + L G W VV    C   
Sbjct: 930  QPDLALYRGPSDEAFDKDGKRMERSIYSRPWIDNESGEIPVTVTLKGRWKVVETPYCKVV 989

Query: 80   KVTANQTFENYTTRHPNIQTRGPPYYLPL 108
                 QT   +  +       G  Y + L
Sbjct: 990  SEDKKQTVLRFLCKD------GASYEVEL 1012


>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
           repeat, protein transport; 2.90A {Saccharomyces
           cerevisiae} SCOP: a.118.8.1
          Length = 292

 Score = 25.0 bits (54), Expect = 9.4
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 71  VLQYLCLQNKVTANQTFENYTTRHPNIQT 99
            L  L   + V A +T +   +  PN   
Sbjct: 206 GLCQLAATDAVAAARTLQEGQSEDPNFAD 234


>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
           transport; 3.00A {Saccharomyces cerevisiae}
          Length = 514

 Score = 25.1 bits (55), Expect = 9.5
 Identities = 6/53 (11%), Positives = 13/53 (24%)

Query: 11  QQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSIDID 63
           +QY  +I+ +         I  +                      L  +  +D
Sbjct: 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445


>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
           translocation, allosteric REG phosphoprotein, TPR
           repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
           PDB: 3fp3_A 3fp4_A 3lca_A
          Length = 537

 Score = 25.1 bits (55), Expect = 9.6
 Identities = 7/51 (13%), Positives = 14/51 (27%)

Query: 11  QQYQTSIKRDPAYSDYLNKIGHIFFGIQPARPAAPAGGLFGTEYDLNLSID 61
           +QY  + + +         IG +          +        E   N +I 
Sbjct: 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0706    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,917,840
Number of extensions: 97704
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 14
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)