BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8556
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/275 (35%), Positives = 154/275 (56%), Gaps = 45/275 (16%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
++GPTASGK+++A+++ + +P E+IS+DSAL+Y MDIGT KP+ E PH L+DI +
Sbjct: 15 LMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRD 74
Query: 102 PTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
P+++YS F DAL + +I VGGTMLYFKAL +G++ LP A+ ++R +
Sbjct: 75 PSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIE 134
Query: 162 IDINKYGISFLYDKLKLLDPVTANQ----------------------------------- 186
+ G L+ +L+ +DPV A +
Sbjct: 135 QQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQTSGDALP 194
Query: 187 ---------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQ 237
P++R +LH+RI RF +ML EV+ + + +L+ +LPS++C+GYRQ
Sbjct: 195 YQVHQFAIAPASRELLHQRIEQRFHQMLASGFE-AEVRALFARGDLHTDLPSIRCVGYRQ 253
Query: 238 TWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRN 272
W Y++G I + + + + ATRQLAK+Q+TWLR
Sbjct: 254 MWSYLEGEISYDEMVYRGVCATRQLAKRQITWLRG 288
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 165/314 (52%), Gaps = 62/314 (19%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREI---TPHHLID 98
++GPTA+GK+ +A+ +++ +PCE+IS+DSAL+Y MDIGT KPS RE+ PH LID
Sbjct: 10 LMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPS---RELLARYPHRLID 66
Query: 99 IIEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPANLKLRT 158
I +P +SYS +F DAL ++ VGGTMLY+KAL +G+ +P A+ ++R
Sbjct: 67 IRDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRA 126
Query: 159 KFNIDINKYGISFLYDKLKLLDPVTA-----NQP-------------------------- 187
+ G L+ +L +DP +A N P
Sbjct: 127 AIEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQRLMRALEVYRLGGVSMSDLRRRQSA 186
Query: 188 ------------------------SNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNL 223
R +LH RI+ RF++ML+Q I EV+ + + +L
Sbjct: 187 EKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQG-FIAEVEALHARSDL 245
Query: 224 NLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLE 283
+ LPS++ +GYRQ W+Y+DG + + E+ IIATRQLAK+Q TWLR+ + +D L
Sbjct: 246 HAGLPSIRAVGYRQVWDYLDGKLSYAEMTERGIIATRQLAKRQFTWLRSWSHLHWMDSLA 305
Query: 284 KNCVQKILNLIKDI 297
+ + + L +K +
Sbjct: 306 GDNLPRALRYLKTV 319
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
Length = 316
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 148/277 (53%), Gaps = 45/277 (16%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
+ GPTASGK+++A+++ + +P E+IS+DSAL+Y DIGT KP+ E PH L+DI +
Sbjct: 15 LXGPTASGKTALAIELRKILPVELISVDSALIYKGXDIGTAKPNAEELLAAPHRLLDIRD 74
Query: 102 PTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
P+++YS F DAL +I VGGT LYFKAL +G++ LP A+ ++R +
Sbjct: 75 PSQAYSAADFRRDALAEXADITAAGRIPLLVGGTXLYFKALLEGLSPLPSADPEVRARIE 134
Query: 162 IDINKYGISFLYDKLKLLDPVTANQ----------------------------------- 186
+ G L+ +L+ +DPV A +
Sbjct: 135 QQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQTSGDALP 194
Query: 187 ---------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQ 237
P++R +LH+RI RF + L EV+ + + +L+ +LPS++C+GYRQ
Sbjct: 195 YQVHQFAIAPASRELLHQRIEQRFHQXLASGFE-AEVRALFARGDLHTDLPSIRCVGYRQ 253
Query: 238 TWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMN 274
W Y++G I + + + ATRQLAK+Q+TWLR
Sbjct: 254 XWSYLEGEISYDEXVYRGVCATRQLAKRQITWLRGWE 290
>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate
Transferase (Bh2366) From Bacillus Halodurans, Northeast
Structural Genomics Consortium Target Bhr41.
pdb|3EXA|A Chain A, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|B Chain B, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|C Chain C, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|D Chain D, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41
Length = 322
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 135/282 (47%), Gaps = 56/282 (19%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
VAI+GPTA GK+ ++ +++ + E+IS DS VY DIGT K + E + PHHLIDI
Sbjct: 6 VAIVGPTAVGKTKTSVXLAKRLNGEVISGDSXQVYRGXDIGTAKITAEEXDGVPHHLIDI 65
Query: 100 IEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLP-PANLKLRT 158
+P++S+SV F + A I I VGGT LY A+ N A+ R
Sbjct: 66 KDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRH 125
Query: 159 KFNIDINKYGISFLYDKLKLLDP--VTANQPSN--------------------------- 189
+ +N YG+ L+DKL +DP A P+N
Sbjct: 126 ELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRRVIRALEIIKLTGKTVTEQARHEEE 185
Query: 190 ---------------RHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG 234
R +L+ RI+ R + +++ LI+E KK+ + + S++ IG
Sbjct: 186 TPSPYNLVXIGLTXERDVLYDRINRRVDQXVEEG-LIDEAKKLYDRGIRDCQ--SVQAIG 242
Query: 235 YRQTWEYIDGLIDR----NTLKEKSIIATRQLAKQQLTWLRN 272
Y++ ++Y+DG + +TLK S R+ AK+QLTW RN
Sbjct: 243 YKEXYDYLDGNVTLEEAIDTLKRNS----RRYAKRQLTWFRN 280
>pdb|3D3Q|A Chain A, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
pdb|3D3Q|B Chain B, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
Length = 340
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 119/281 (42%), Gaps = 52/281 (18%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
+ I+GPTASGK+ +++++++ EIIS DS VY DIGT K + E E PH+ IDI
Sbjct: 10 IVIVGPTASGKTELSIEVAKKFNGEIISGDSXQVYQGXDIGTAKVTTEEXEGIPHYXIDI 69
Query: 100 IEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGT------MLYFKALRD--------- 144
+ P S+S +F + A IK+I GGT +LY A D
Sbjct: 70 LPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKXK 129
Query: 145 ------------GINKLPP--ANLKLRTKFNIDINKY-----GISFLYDKLKLL------ 179
NKL A+ + +I N I + KLL
Sbjct: 130 QVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSSRKKV 189
Query: 180 -------DPVTANQPSNRHILHKRISDRFKKMLDQDLLINEVKK-IRKKWNLNLNLPSMK 231
D + +R L+ RI+ R L L NEV+ + + + + S +
Sbjct: 190 QQFTENYDTLLIGIEXSRETLYLRINKRVDIXLGHGLF-NEVQHLVEQGFEAS---QSXQ 245
Query: 232 CIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRN 272
IGY++ I G I EK +RQ AK+QLTW +N
Sbjct: 246 AIGYKELVPVIKGNISXENAVEKLKQHSRQYAKRQLTWFKN 286
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPH|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
Length = 409
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 127/289 (43%), Gaps = 57/289 (19%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
+ I G T GKS +++++++ E+I+ DS VY D+ I TNK + ERE PHH+++
Sbjct: 5 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNH 64
Query: 100 IEPTKSYSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKALRDGINKLPPANLKLRTK 159
++ ++ Y +F + + +I++I VGGT Y + L + + KL T+
Sbjct: 65 VDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKL-TR 123
Query: 160 FNIDI-NKYGISFLYDKLKLLDP----------------------VTANQPSNR------ 190
+DI +Y+ L DP T +PS
Sbjct: 124 KQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQKI 183
Query: 191 ---------------HILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSM----- 230
L +R+ DR ML++ L E+K++ + ++ N P
Sbjct: 184 TLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGAL-QEIKQLYEYYSQNKFTPEQCENGV 242
Query: 231 -KCIGYRQTWEYIDGLIDRNTLK-----EKSIIATRQLAKQQLTWLRNM 273
+ IG+++ ++ G D NT+K E+ TRQ AK+Q+ W++ M
Sbjct: 243 WQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKM 291
>pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With Atp
Length = 339
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 36 RKTKVAIL-GPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
RK K+ +L G T +GKS +++ ++ + P E+I+ D VY +DI TNK S+ +R PH
Sbjct: 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPH 97
Query: 95 HLIDIIEPTKS-YSVIQFCEDALFSIKNIXXXXXXXXXVGGTMLYFKAL 142
HL+ ++P + + F A ++ I VGG+ + AL
Sbjct: 98 HLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHAL 146
>pdb|1L1Q|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine
pdb|1L1R|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine, Mg2+ And Prpp
Length = 186
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 18/133 (13%)
Query: 1 MRDVKDVLDRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTAS---GKSSVALKI 57
+D+ D+L D ++++TA ++ + K++ +++ ILG + G VAL+
Sbjct: 25 FKDLSDILSTPAALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIVANSLGVGFVALRK 84
Query: 58 SEYIPCEIISIDSALVYCDMDIGTNKPSIIE---REITPHHLI----DIIEPTKS-YSVI 109
+ +P ++ C D+ K IE R++ PH ++ D++ + + I
Sbjct: 85 AGKLPGDVCK-------CTFDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGGTLLAAI 137
Query: 110 QFCEDALFSIKNI 122
+ CE A +NI
Sbjct: 138 ELCETAGVKPENI 150
>pdb|2ZE5|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase
pdb|2ZE6|A Chain A, Crystal Structure Of Adenosine
Phosphate-isopentenyltransferase Complexed With
Substrate Analog, Dmaspp
pdb|2ZE7|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With Zinc
Ion And Substrate Analog, Dmaspp
pdb|2ZE8|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|B Chain B, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|C Chain C, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|D Chain D, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
Length = 253
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREI 91
I GPT SGK+ +A++I++ ++++D V C I T +E E+
Sbjct: 6 IYGPTCSGKTDMAIQIAQETGWPVVALDR--VQCCPQIATGSGRPLESEL 53
>pdb|3AKC|A Chain A, Crystal Structure Of Cmp Kinase In Complex With Cdp And
Adp From Thermus Thermophilus Hb8
pdb|3AKD|A Chain A, Crystal Structure Of Cmp Kinase In Complex With Cdp From
Thermus Thermophilus Hb8
pdb|3AKE|A Chain A, Crystal Structure Of Cmp Kinase In Complex With Cmp From
Thermus Thermophilus Hb8
Length = 208
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74
V I GP+ASGKSSVA +++ + +S S L+Y
Sbjct: 5 VTIDGPSASGKSSVARRVAAALGVPYLS--SGLLY 37
>pdb|2FXT|A Chain A, Crystal Structure Of Yeast Tim44
Length = 192
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 170 SFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKW--NLNLNL 227
S +Y + KL+DP +N+ RH+ + + + + D+ K+ KKW N+
Sbjct: 38 SRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDV------KVLKKWFSEAPFNV 91
Query: 228 PSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQL 267
+ + +++ Y DG I ++ I++ + LA Q +
Sbjct: 92 YAAQQKIFKEQDVYADGRI--LDIRGVEIVSAKLLAPQDI 129
>pdb|3QK9|A Chain A, Yeast Tim44 C-Terminal Domain Complexed With Cymal-3
pdb|3QK9|B Chain B, Yeast Tim44 C-Terminal Domain Complexed With Cymal-3
Length = 222
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 170 SFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKW--NLNLNL 227
S +Y + KL+DP +N+ RH+ + + + + D+ K+ KKW N+
Sbjct: 62 SRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDV------KVLKKWFSEAPFNV 115
Query: 228 PSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQL 267
+ + +++ Y DG I ++ I++ + LA Q +
Sbjct: 116 YAAQQKIFKEQDVYADGRI--LDIRGVEIVSAKLLAPQDI 153
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLI 97
T+V LG G ++VA Y + + +A++ CD D + +I E +IT L+
Sbjct: 459 TRVTTLGHVQRGGTAVAFD-RIYATLQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLV 517
Query: 98 DIIEPTK 104
D +E T+
Sbjct: 518 DAVELTQ 524
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 39 KVAILGPTASGKSSVALKISEYIP---------CEIISIDSALVYCDMDIGTNKPSIIER 89
KV ILGP SGK+++ IS +P E+ I + + Y TN P E
Sbjct: 32 KVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYS-----TNLPEAYEI 86
Query: 90 EITPHHLIDIIEPTKS 105
+T + ++ + E K
Sbjct: 87 GVTVNDIVYLYEELKG 102
>pdb|3N50|A Chain A, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|B Chain B, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|C Chain C, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|D Chain D, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|E Chain E, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|F Chain F, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
Length = 159
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 84 PSIIEREITPHHLIDIIEPTKSYSVIQFCEDA 115
P I + P H+ ++E T SY QFC+ A
Sbjct: 52 PHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGA 83
>pdb|3MUJ|A Chain A, Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATION
HELICES
pdb|3MUJ|B Chain B, Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATION
HELICES
Length = 138
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 84 PSIIEREITPHHLIDIIEPTKSYSVIQFCEDA 115
P I + P H+ ++E T SY QFC+ A
Sbjct: 51 PHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGA 82
>pdb|1CKM|A Chain A, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKM|B Chain B, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKN|A Chain A, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
pdb|1CKO|A Chain A, Structure Of Mrna Capping Enzyme In Complex With The Cap
Analog Gpppg
Length = 330
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 27/76 (35%)
Query: 222 NLNLNLPSMKCIGYRQ------------TWEYIDGLIDRNTLKEKSIIATRQLAKQQLTW 269
NL N+P K GY TW+YI G D+N A +LT+
Sbjct: 260 NLRKNVPVGKLDGYYNKGSIVECGFADGTWKYIQGRSDKNQ------------ANDRLTY 307
Query: 270 ---LRNMNEKITIDCL 282
L N+ E ITID L
Sbjct: 308 EKTLLNIEENITIDEL 323
>pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
Length = 330
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 27/76 (35%)
Query: 222 NLNLNLPSMKCIGYRQ------------TWEYIDGLIDRNTLKEKSIIATRQLAKQQLTW 269
NL N+P K GY TW+YI G D+N A +LT+
Sbjct: 260 NLRKNVPVGKLDGYYNKGSIVECGFADGTWKYIQGRSDKNQ------------ANDRLTY 307
Query: 270 ---LRNMNEKITIDCL 282
L N+ E ITID L
Sbjct: 308 EKTLLNIEENITIDEL 323
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,212,146
Number of Sequences: 62578
Number of extensions: 310892
Number of successful extensions: 923
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 28
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)