BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8556
(298 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6SV54|MIAA_JANMA tRNA dimethylallyltransferase OS=Janthinobacterium sp. (strain
Marseille) GN=miaA PE=3 SV=1
Length = 314
Score = 277 bits (708), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 136/301 (45%), Positives = 183/301 (60%), Gaps = 45/301 (14%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
V+I+GPTASGK++ AL ++E IP EIIS+DSALVY +MDIGT KPS E PHHLIDI
Sbjct: 8 VSIMGPTASGKTAAALAVAEKIPAEIISVDSALVYREMDIGTAKPSAEELAQVPHHLIDI 67
Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
++P SYSV+QF +DA+ I + KLPLLVGGTMLYFK L+DG++ LP A+ LR +
Sbjct: 68 LDPLDSYSVMQFRQDAIRLAAEISARGKLPLLVGGTMLYFKGLKDGLDALPQADAALRAE 127
Query: 160 FNIDINKYGISFLYDKLKLLDPVTAN---------------------------------- 185
+ + G ++ KL LDP+TA
Sbjct: 128 LDAEAAAIGYPAMHAKLAALDPITAERLKPNDSQRIQRALEIIALTGQPMSALLAQAPKT 187
Query: 186 -----------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG 234
+PS+R +LH RI+ RF ML L++EVK +R + +L+L LPSM+C+G
Sbjct: 188 ELPFTLLPIALEPSDRSVLHTRIATRFDAMLKGGALLDEVKALRARGDLHLGLPSMRCVG 247
Query: 235 YRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLI 294
YRQ+WEY+DG L+E+ I ATRQLAK+QLTWLR+M+++ IDCL + IL I
Sbjct: 248 YRQSWEYLDGAYSLAELRERGIAATRQLAKRQLTWLRSMDDRHIIDCLAPDASGAILQQI 307
Query: 295 K 295
+
Sbjct: 308 E 308
>sp|A4G288|MIAA_HERAR tRNA dimethylallyltransferase OS=Herminiimonas arsenicoxydans
GN=miaA PE=3 SV=1
Length = 320
Score = 270 bits (689), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 136/300 (45%), Positives = 180/300 (60%), Gaps = 45/300 (15%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
V+I+GPTASGK++ AL I+E IP EIIS+DSALVY +M+IGT KP+ ER PHHLIDI
Sbjct: 13 VSIMGPTASGKTATALAIAEQIPSEIISVDSALVYREMNIGTAKPTDEERASVPHHLIDI 72
Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
++P +YSV+QF +DAL + I + KL LLVGGTMLYFK L+DG++ LP A+ LR +
Sbjct: 73 LDPLDAYSVMQFRQDALRLVAEISARGKLALLVGGTMLYFKGLKDGLDALPQADAALRAE 132
Query: 160 FNIDINKYGISFLYDKLKLLDPVTAN---------------------------------- 185
+ + G ++ KL LDP+TA
Sbjct: 133 LDAEAALIGSPAMHAKLAKLDPITAARLKPNDTQRIQRALEIITLTGQPMSALLAQAPKS 192
Query: 186 -----------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG 234
+PS R +LH RI+ RF ML L++EV+ +R + +L+ LPSM+C+G
Sbjct: 193 ELPFTLLPIALEPSERSVLHARIATRFDAMLKDGGLLDEVRALRARGDLHPGLPSMRCVG 252
Query: 235 YRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLI 294
YRQ+WEY+DG L+EK I ATRQLAK+QLTWLR M E+ TIDCL + IL I
Sbjct: 253 YRQSWEYLDGAYGLAELREKGIAATRQLAKRQLTWLRGMPERQTIDCLAPDVAGSILRKI 312
>sp|Q145C5|MIAA_BURXL tRNA dimethylallyltransferase OS=Burkholderia xenovorans (strain
LB400) GN=miaA PE=3 SV=1
Length = 315
Score = 257 bits (656), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 180/305 (59%), Gaps = 49/305 (16%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
+LGPTASGK++ AL ++ P EIIS+DSALVY +MDIGT KP+ ER + PHHLIDI++
Sbjct: 12 LLGPTASGKTAAALALAARHPVEIISVDSALVYREMDIGTAKPTAEERAVAPHHLIDIVD 71
Query: 102 PTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
PT SYS QF D L I + +LPLLVGGTMLY+KAL G+N LP A+ LR +
Sbjct: 72 PTDSYSAAQFRADTLRLTGEIHARGRLPLLVGGTMLYYKALTQGLNDLPAADADLRATLD 131
Query: 162 IDINKYGISFLYDKLKLLDPVTAN------------------------------------ 185
D + G ++ +L +DPVTA
Sbjct: 132 ADAAREGWPAMHARLAAVDPVTAARLAPNDSQRIQRALEVFMLTGQAMSALLAAPARVDD 191
Query: 186 ------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCI 233
+PS+R +LH RI RF ML + ++EV K+R++ +L+ +PSM+C+
Sbjct: 192 AAAAWRFVPVALEPSDRGVLHARIEKRFDAML-ANGFVDEVVKLRERGDLSPEMPSMRCV 250
Query: 234 GYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNL 293
GYRQ WEY+DG +D +T+++K + ATRQL K+QLTWLR+M E++ +DC + + ++L
Sbjct: 251 GYRQVWEYLDGAVDYSTMRDKGVFATRQLCKRQLTWLRSMTERVVVDCCDPHATARVLEA 310
Query: 294 IKDIF 298
I+ +
Sbjct: 311 IEALL 315
>sp|Q8XWB0|MIAA_RALSO tRNA dimethylallyltransferase OS=Ralstonia solanacearum (strain
GMI1000) GN=miaA PE=3 SV=1
Length = 323
Score = 256 bits (655), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 182/311 (58%), Gaps = 52/311 (16%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID 98
V +LGPTASGK++ AL ++E P EIIS+DSALVY DMDIGT KPS E+ I PHHLID
Sbjct: 11 AVCLLGPTASGKTAAALALAERWPVEIISMDSALVYRDMDIGTAKPSRAEQAIAPHHLID 70
Query: 99 IIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRT 158
II+P +YS QF DA I+ I + +LPL+VGGTMLY+KAL G++ LP A+ +R
Sbjct: 71 IIDPLDAYSAAQFATDAQALIEAIRARGRLPLIVGGTMLYYKALTQGLSDLPGADPAIRA 130
Query: 159 KFNIDINKYGISFLYDKLKLLDPVTAN--------------------------------- 185
+ + + + G L+ KL +DPVTA
Sbjct: 131 EIDAEAARDGWPALHAKLAQVDPVTAARLHATDAQRIQRALELYRLTGQPMSALLAREAG 190
Query: 186 ------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNL 227
+P++R +LH RI+ RF ML LL +EV+ +R++ +L+ L
Sbjct: 191 AAAFHRHEAAAAYLSIALEPADRAVLHARIAQRFDAMLAGGLL-DEVEALRRRGDLSPVL 249
Query: 228 PSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCV 287
PS++C+GYRQ W Y+DG ID TL+E+ I ATRQL K+Q+TWLR+ E+ +DCL + V
Sbjct: 250 PSIRCVGYRQAWAYLDGEIDMATLREQGIAATRQLCKRQITWLRSTPERRVVDCLAPDYV 309
Query: 288 QKILNLIKDIF 298
++ L+++
Sbjct: 310 DQVARLVRNAL 320
>sp|B2UBL0|MIAA_RALPJ tRNA dimethylallyltransferase OS=Ralstonia pickettii (strain 12J)
GN=miaA PE=3 SV=1
Length = 325
Score = 253 bits (645), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 129/308 (41%), Positives = 180/308 (58%), Gaps = 52/308 (16%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID 98
+ +LGPTASGK++ ALK++E P EIIS+DSALVY MDIGT KPS E+ I PHHLID
Sbjct: 11 AICLLGPTASGKTAAALKLAERWPVEIISMDSALVYRGMDIGTAKPSAEEQAIAPHHLID 70
Query: 99 IIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRT 158
II+P +YS QF DA I I + KLPL+VGGTMLY+KAL G++ LP A+ +R
Sbjct: 71 IIDPLDAYSAAQFANDANALIDAIRARGKLPLIVGGTMLYYKALTQGLSDLPGADPAIRA 130
Query: 159 KFNIDINKYGISFLYDKLKLLDPVTAN--------------------------------- 185
+ + + + G L+ KL L+DPVTA
Sbjct: 131 EIDAEAARDGWPALHAKLALVDPVTAARLHTTDAQRIQRALELYRLTGQPMSALLAREVG 190
Query: 186 ------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNL 227
+PS+R +LH RI+ RF ML LL +EV+ +R++ +L+ L
Sbjct: 191 ANAFQQHDAAAPYLTIALEPSDRLVLHARIAQRFDAMLAGGLL-DEVEGLRRRGDLSPTL 249
Query: 228 PSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCV 287
PS++C+GYRQ W Y++G ID L+E+ I ATRQL K+Q+TWLR+ E+ +DCL + V
Sbjct: 250 PSIRCVGYRQAWAYLEGEIDMAALREQGIAATRQLCKRQITWLRSTPERHVVDCLAPDYV 309
Query: 288 QKILNLIK 295
++ L++
Sbjct: 310 DQVARLVQ 317
>sp|A4JBT2|MIAA_BURVG tRNA dimethylallyltransferase OS=Burkholderia vietnamiensis (strain
G4 / LMG 22486) GN=miaA PE=3 SV=1
Length = 324
Score = 251 bits (642), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 182/316 (57%), Gaps = 50/316 (15%)
Query: 32 KLLFRKTKVA-ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIERE 90
L R T +A +LGPTASGK++ AL ++ P EI+S+DSALVY DMDIGT KP+ ER
Sbjct: 4 SLQSRPTTIACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRDMDIGTAKPTRDERA 63
Query: 91 ITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLP 150
PHHLIDII+P SYS F D L I I + PLL GGTMLY+KAL G+N LP
Sbjct: 64 RVPHHLIDIIDPADSYSAASFRADTLRLIGEIAARGNTPLLAGGTMLYYKALTQGLNDLP 123
Query: 151 PANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN------------------------- 185
A+ LR + + D + G L+ +L +DP TA
Sbjct: 124 GADPALRAELDADAARDGWPALHARLARIDPATAARLAPNDAQRIQRALEVCMLSGQPMS 183
Query: 186 -----------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWN 222
+PS+R +LH RI+ RF ML+ I+EV+++R++ +
Sbjct: 184 ALLAAPRAADDAAAAYRFVPVALEPSDRAVLHARIAQRFDAMLEAG-FIDEVERLRRRED 242
Query: 223 LNLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCL 282
L+L LPSM+C+GYRQ WEY+DG ID T+++K I ATRQL K+Q+TWLR M E+I +DC+
Sbjct: 243 LHLGLPSMRCVGYRQAWEYLDGAIDYRTMRDKGIFATRQLCKRQITWLRAMPERIVVDCI 302
Query: 283 EKNCVQKILNLIKDIF 298
++ + L+ ++ +
Sbjct: 303 ARDSTAQALDALERVL 318
>sp|B2T068|MIAA_BURPP tRNA dimethylallyltransferase OS=Burkholderia phytofirmans (strain
DSM 17436 / PsJN) GN=miaA PE=3 SV=2
Length = 315
Score = 251 bits (640), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 177/305 (58%), Gaps = 49/305 (16%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
+LGPTASGK++ AL ++ P EIIS+DSALVY +MDIGT KP+ ER + PHHLIDI++
Sbjct: 12 LLGPTASGKTAAALALAARRPVEIISVDSALVYREMDIGTAKPTAEERAVAPHHLIDIVD 71
Query: 102 PTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
PT +YS QF D L I + +LPLLVGGTMLY+KAL G+N LP A+ ++R +
Sbjct: 72 PTDAYSAAQFRADTLRLTAEIHARGRLPLLVGGTMLYYKALTQGLNDLPAADAEVRATLD 131
Query: 162 IDINKYGISFLYDKLKLLDPVTAN------------------------------------ 185
D + G L+ +L LDPVTA
Sbjct: 132 ADAAREGWPALHARLAALDPVTAARLAPNDSQRIQRALEVFMLTGQTMSALLAAPVMQDD 191
Query: 186 ------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCI 233
+PS R +LH RI RF ML I+EV K+R++ +L + SM+C+
Sbjct: 192 SAALWRFVPIALEPSERSVLHARIEKRFDAMLAGG-FIDEVVKLRERGDLLPEMASMRCV 250
Query: 234 GYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNL 293
GYRQ WEY+DG +D +T+++K + ATRQL K+QLTWLR+M E++ +DC + + ++L
Sbjct: 251 GYRQVWEYLDGAVDYSTMRDKGVFATRQLCKRQLTWLRSMPERVVVDCCDPHATARVLEA 310
Query: 294 IKDIF 298
I+ +
Sbjct: 311 IEALL 315
>sp|Q0BI05|MIAA_BURCM tRNA dimethylallyltransferase OS=Burkholderia ambifaria (strain
ATCC BAA-244 / AMMD) GN=miaA PE=3 SV=1
Length = 324
Score = 248 bits (632), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 178/309 (57%), Gaps = 49/309 (15%)
Query: 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLI 97
T +LGPTASGK++ AL ++ P EI+S+DSALVY DMDIGT KP+ ER PHHLI
Sbjct: 11 TITCLLGPTASGKTAAALALAARRPIEIVSVDSALVYRDMDIGTAKPTRDERARVPHHLI 70
Query: 98 DIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLR 157
DII+P +YS +F DAL I I + + PLL GGTMLY+KAL G+N LP A+ +R
Sbjct: 71 DIIDPADAYSAAEFRADALRLIGEIAARGRTPLLAGGTMLYYKALTQGLNDLPTADPAVR 130
Query: 158 TKFNIDINKYGISFLYDKLKLLDPVTAN-------------------------------- 185
+ + D + G L+ +L +DP TA
Sbjct: 131 AELDADAARDGWPALHARLAQVDPATAARLAPNDSQRIQRALEVFLLSGQPMSVLLAAPR 190
Query: 186 ----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPS 229
+PS+R +LH RI+ RF MLD I+EV+++R++ +L+L LPS
Sbjct: 191 RADDEAAAYRFVPVALEPSDRAVLHARIAQRFDAMLDAG-FIDEVERLRRREDLHLGLPS 249
Query: 230 MKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQK 289
M+C+GYRQ WE++DG D T+++K I ATRQL K+Q+TWLR M E+I +DC+ +
Sbjct: 250 MRCVGYRQAWEFLDGDTDYRTMRDKGIFATRQLCKRQITWLRAMPERIVVDCVAPDATAL 309
Query: 290 ILNLIKDIF 298
L+ ++ +
Sbjct: 310 ALDTLERVL 318
>sp|B1YTV7|MIAA_BURA4 tRNA dimethylallyltransferase OS=Burkholderia ambifaria (strain
MC40-6) GN=miaA PE=3 SV=1
Length = 324
Score = 248 bits (632), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 182/312 (58%), Gaps = 50/312 (16%)
Query: 36 RKTKVA-ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
R T +A +LGPTASGK++ AL ++ P EI+SIDSALVY DMDIGT KP+ ER PH
Sbjct: 8 RPTTIACLLGPTASGKTAAALALAARRPIEIVSIDSALVYRDMDIGTAKPTRDERARVPH 67
Query: 95 HLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANL 154
HLIDII+P +YS +F DAL I I + + PLL GGTMLY+KAL G+N LP A+
Sbjct: 68 HLIDIIDPADAYSAAEFRADALRLIGEIAARGRTPLLAGGTMLYYKALTQGLNDLPTADP 127
Query: 155 KLRTKFNIDINKYGISFLYDKLKLLDPVTAN----------------------------- 185
+R + + D + G L+ +L +DP TA
Sbjct: 128 AVRAELDADAARDGWPALHARLAQVDPATAARLAPNDSQRIQRALEVFLLSGQPMSVLLA 187
Query: 186 -------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLN 226
+PS+R +LH RI+ RF MLD I+EV+++R++ +L+ +
Sbjct: 188 APRRADDEAAAYRFVPVALEPSDRAVLHARIAQRFDAMLDAG-FIDEVERLRRREDLHPD 246
Query: 227 LPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNC 286
LPSM+C+GYRQ WE++DG D T+++K I ATRQL K+Q+TWLR + E+I +DC+ +
Sbjct: 247 LPSMRCVGYRQAWEFLDGDTDYRTMRDKGIFATRQLCKRQITWLRALPERIVVDCVAPDA 306
Query: 287 VQKILNLIKDIF 298
+ L+ ++ +
Sbjct: 307 TARALDTLERVL 318
>sp|A8H8G7|MIAA_SHEPA tRNA dimethylallyltransferase OS=Shewanella pealeana (strain ATCC
700345 / ANG-SQ1) GN=miaA PE=3 SV=1
Length = 296
Score = 248 bits (632), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 180/293 (61%), Gaps = 45/293 (15%)
Query: 43 LGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEP 102
+GPTASGK+++A+++ + CEIIS+DSAL+Y DMDIGT KP E+ PH LIDII+P
Sbjct: 1 MGPTASGKTALAIELVKQYDCEIISVDSALIYKDMDIGTAKPDAAEQAAAPHRLIDIIDP 60
Query: 103 TKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNI 162
+SYS F DAL I++IL + K PLLVGGTM+YFKAL +G++ LP A+ +R +
Sbjct: 61 AQSYSAADFRRDALAQIEDILSRGKTPLLVGGTMMYFKALLEGLSPLPGADEAIREQIAA 120
Query: 163 DINKYGISFLYDKLKLLDPVTANQ------------------------------------ 186
+ G L+D+L+ +DPV+A +
Sbjct: 121 EAEAQGWQALHDQLREIDPVSAERIHPNDPQRLARALEVYRVSGQTLTELTKTKSDVFPY 180
Query: 187 --------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQT 238
PS+R +LH+ I RFK ML Q +EV++++ + +LNL+LPSM+C+GYRQ
Sbjct: 181 DVVQFAIAPSDRKVLHRAIETRFKAMLAQG-FTSEVERLKARTDLNLDLPSMRCVGYRQC 239
Query: 239 WEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKIL 291
W+Y+DG ID +T+ EK+I+ATRQLAK+QLTWLR + I ++ +N + ++
Sbjct: 240 WQYLDGEIDYDTMVEKAIVATRQLAKRQLTWLRGWPDLIWLESGAENNLATVM 292
>sp|Q1LJ94|MIAA_RALME tRNA dimethylallyltransferase OS=Ralstonia metallidurans (strain
CH34 / ATCC 43123 / DSM 2839) GN=miaA PE=3 SV=1
Length = 315
Score = 247 bits (630), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 177/303 (58%), Gaps = 51/303 (16%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
V +LGPTASGK++ AL+++ P EIIS+DSALVY +MDIGT KP+ E PHHLIDI
Sbjct: 10 VCLLGPTASGKTAAALELAARTPVEIISLDSALVYREMDIGTAKPTHEELASVPHHLIDI 69
Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
I+P +SYS QF DA I I + + PL+VGGTMLY+KAL G+N LP A+ +R +
Sbjct: 70 IDPLESYSAAQFMTDAERLIGEIRARGRTPLIVGGTMLYYKALTQGLNDLPQADATVRAE 129
Query: 160 FNIDINKYGISFLYDKLKLLDPVTAN---------------------------------- 185
+ + G L+ L +DP+TA
Sbjct: 130 LDALAAERGWPALHAMLAEVDPITAARLAPNDAQRIQRALEIHRLSGQPMSALLARQADA 189
Query: 186 ----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPS 229
+PS+R +LH RI+DR+ ML + LI EV+++R + +L+L LPS
Sbjct: 190 RTFTGAADARYRVIALEPSDRAVLHARIADRYDAML-KGGLIEEVERLRARGDLHLGLPS 248
Query: 230 MKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQK 289
++C+GYRQ WEY+DG D T++E+ I ATRQL K+QLTWLR+ E+I IDCL + V +
Sbjct: 249 IRCVGYRQVWEYLDGDCDFATMRERGIAATRQLCKRQLTWLRSTPERIGIDCLAPDYVAR 308
Query: 290 ILN 292
+ +
Sbjct: 309 VAD 311
>sp|Q63R58|MIAA_BURPS tRNA dimethylallyltransferase OS=Burkholderia pseudomallei (strain
K96243) GN=miaA PE=3 SV=1
Length = 324
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 176/310 (56%), Gaps = 49/310 (15%)
Query: 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHL 96
+T +LGPTASGK++ AL ++ P EI+S+DSALVY MDIGT KP+ ER PHHL
Sbjct: 10 RTVACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRGMDIGTAKPTRDERAAVPHHL 69
Query: 97 IDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKL 156
IDI++P +YS +F DAL + I + + PLL GGTMLY++AL G+N LP A+ +
Sbjct: 70 IDIVDPADAYSAAEFRADALRLVAQIAARGRTPLLAGGTMLYYRALTQGLNDLPAADPDV 129
Query: 157 RTKFNIDINKYGISFLYDKLKLLDPVTAN------------------------------- 185
R + D + G L+ +L +DP TA
Sbjct: 130 RATLDADAARDGWPALHARLAGIDPATAARLAPNDSQRIQRALEVYLLTGQPMSALLAAP 189
Query: 186 -----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLP 228
+PS R +LH RI+ RF ML+ I+EV+++R++ +L+L LP
Sbjct: 190 PRDDDAAAGLRFVPVALEPSERAVLHARIAARFDAMLEAG-FIDEVERLRRRDDLHLGLP 248
Query: 229 SMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQ 288
SM+C+GYRQ WEY+DG D T+++K I ATRQL K+QLTWLR M E+I +DC +
Sbjct: 249 SMRCVGYRQAWEYLDGCTDYRTMRDKGIFATRQLCKRQLTWLRAMPERIVVDCCAPDATV 308
Query: 289 KILNLIKDIF 298
+ ++ ++ +
Sbjct: 309 RAVDALERVL 318
>sp|Q3JP23|MIAA_BURP1 tRNA dimethylallyltransferase OS=Burkholderia pseudomallei (strain
1710b) GN=miaA PE=3 SV=2
Length = 324
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 176/310 (56%), Gaps = 49/310 (15%)
Query: 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHL 96
+T +LGPTASGK++ AL ++ P EI+S+DSALVY MDIGT KP+ ER PHHL
Sbjct: 10 RTVACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRGMDIGTAKPTRDERAAVPHHL 69
Query: 97 IDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKL 156
IDI++P +YS +F DAL + I + + PLL GGTMLY++AL G+N LP A+ +
Sbjct: 70 IDIVDPADAYSAAEFRADALRLVAQIAARGRTPLLAGGTMLYYRALTQGLNDLPAADPDV 129
Query: 157 RTKFNIDINKYGISFLYDKLKLLDPVTAN------------------------------- 185
R + D + G L+ +L +DP TA
Sbjct: 130 RATLDADAARDGWPALHARLAGIDPATAARLAPNDSQRIQRALEVYLLTGQPMSALLAAP 189
Query: 186 -----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLP 228
+PS R +LH RI+ RF ML+ I+EV+++R++ +L+L LP
Sbjct: 190 PRDDDAAAGLRFVPVALEPSERAVLHARIAARFDAMLEAG-FIDEVERLRRRDDLHLGLP 248
Query: 229 SMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQ 288
SM+C+GYRQ WEY+DG D T+++K I ATRQL K+QLTWLR M E+I +DC +
Sbjct: 249 SMRCVGYRQAWEYLDGCTDYRTMRDKGIFATRQLCKRQLTWLRAMPERIVVDCCAPDATV 308
Query: 289 KILNLIKDIF 298
+ ++ ++ +
Sbjct: 309 RAVDALERVL 318
>sp|A3NYW4|MIAA_BURP0 tRNA dimethylallyltransferase OS=Burkholderia pseudomallei (strain
1106a) GN=miaA PE=3 SV=1
Length = 324
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 176/310 (56%), Gaps = 49/310 (15%)
Query: 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHL 96
+T +LGPTASGK++ AL ++ P EI+S+DSALVY MDIGT KP+ ER PHHL
Sbjct: 10 RTVACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRGMDIGTAKPTRDERAAVPHHL 69
Query: 97 IDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKL 156
IDI++P +YS +F DAL + I + + PLL GGTMLY++AL G+N LP A+ +
Sbjct: 70 IDIVDPADAYSAAEFRADALRLVAQIAARGRTPLLAGGTMLYYRALTQGLNDLPAADPDV 129
Query: 157 RTKFNIDINKYGISFLYDKLKLLDPVTAN------------------------------- 185
R + D + G L+ +L +DP TA
Sbjct: 130 RATLDADAARDGWPALHARLAGIDPATAARLAPNDSQRIQRALEVYLLTGQPMSALLAAP 189
Query: 186 -----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLP 228
+PS R +LH RI+ RF ML+ I+EV+++R++ +L+L LP
Sbjct: 190 PRDDDAAAGLRFVPVALEPSERAVLHARIAARFDAMLEAG-FIDEVERLRRRDDLHLGLP 248
Query: 229 SMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQ 288
SM+C+GYRQ WEY+DG D T+++K I ATRQL K+QLTWLR M E+I +DC +
Sbjct: 249 SMRCVGYRQAWEYLDGCTDYRTMRDKGIFATRQLCKRQLTWLRAMPERIVVDCCAPDATV 308
Query: 289 KILNLIKDIF 298
+ ++ ++ +
Sbjct: 309 RAVDALERVL 318
>sp|A3ND55|MIAA_BURP6 tRNA dimethylallyltransferase OS=Burkholderia pseudomallei (strain
668) GN=miaA PE=3 SV=1
Length = 324
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 176/310 (56%), Gaps = 49/310 (15%)
Query: 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHL 96
+T +LGPTASGK++ AL ++ P EI+S+DSALVY MDIGT KP+ ER PHHL
Sbjct: 10 RTVACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRGMDIGTAKPTRDERAAVPHHL 69
Query: 97 IDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKL 156
IDI++P +YS +F DAL + I + + PLL GGTMLY++AL G+N LP A+ +
Sbjct: 70 IDIVDPADAYSAAEFRADALRLVAQIAARGRTPLLAGGTMLYYRALTQGLNDLPAADPDV 129
Query: 157 RTKFNIDINKYGISFLYDKLKLLDPVTAN------------------------------- 185
R + D + G L+ +L +DP TA
Sbjct: 130 RATLDADAARDGWPALHARLAGIDPATAARLAPNDSQRIQRALEVYLLTGQPMSALLAAP 189
Query: 186 -----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLP 228
+PS R +LH RI+ RF ML+ I+EV+++R++ +L+L LP
Sbjct: 190 PRDDDAAAGLRFVPVALEPSERAVLHARIAARFDAMLEAG-FIDEVERLRRRDDLHLGLP 248
Query: 229 SMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQ 288
SM+C+GYRQ WEY+DG D T+++K I ATRQL K+QLTWLR M E+I +DC +
Sbjct: 249 SMRCVGYRQAWEYLDGCTDYRTMRDKGIFATRQLCKRQLTWLRAMPERIVVDCCAPDATV 308
Query: 289 KILNLIKDIF 298
+ ++ ++ +
Sbjct: 309 RAVDALERVL 318
>sp|A1V0V9|MIAA_BURMS tRNA dimethylallyltransferase OS=Burkholderia mallei (strain SAVP1)
GN=miaA PE=3 SV=1
Length = 324
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 176/310 (56%), Gaps = 49/310 (15%)
Query: 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHL 96
+T +LGPTASGK++ AL ++ P EI+S+DSALVY MDIGT KP+ ER PHHL
Sbjct: 10 RTVACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRGMDIGTAKPTRDERAAVPHHL 69
Query: 97 IDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKL 156
IDI++P +YS +F DAL + I + + PLL GGTMLY++AL G+N LP A+ +
Sbjct: 70 IDIVDPADAYSAAEFRADALRLVAQIAARGRTPLLAGGTMLYYRALTQGLNDLPAADPDV 129
Query: 157 RTKFNIDINKYGISFLYDKLKLLDPVTAN------------------------------- 185
R + D + G L+ +L +DP TA
Sbjct: 130 RATLDADAARDGWPALHARLAGIDPATAARLAPNDSQRIQRALEVYLLTGQPMSALLAAP 189
Query: 186 -----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLP 228
+PS R +LH RI+ RF ML+ I+EV+++R++ +L+L LP
Sbjct: 190 PRDNDAAAGLRFVPVALEPSERAVLHARIAARFDAMLEAG-FIDEVERLRRRDDLHLGLP 248
Query: 229 SMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQ 288
SM+C+GYRQ WEY+DG D T+++K I ATRQL K+QLTWLR M E+I +DC +
Sbjct: 249 SMRCVGYRQAWEYLDGCTDYRTMRDKGIFATRQLCKRQLTWLRAMPERIVVDCCAPDATV 308
Query: 289 KILNLIKDIF 298
+ ++ ++ +
Sbjct: 309 RAVDALERVL 318
>sp|Q62HE6|MIAA_BURMA tRNA dimethylallyltransferase OS=Burkholderia mallei (strain ATCC
23344) GN=miaA PE=3 SV=1
Length = 324
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 176/310 (56%), Gaps = 49/310 (15%)
Query: 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHL 96
+T +LGPTASGK++ AL ++ P EI+S+DSALVY MDIGT KP+ ER PHHL
Sbjct: 10 RTVACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRGMDIGTAKPTRDERAAVPHHL 69
Query: 97 IDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKL 156
IDI++P +YS +F DAL + I + + PLL GGTMLY++AL G+N LP A+ +
Sbjct: 70 IDIVDPADAYSAAEFRADALRLVAQIAARGRTPLLAGGTMLYYRALTQGLNDLPAADPDV 129
Query: 157 RTKFNIDINKYGISFLYDKLKLLDPVTAN------------------------------- 185
R + D + G L+ +L +DP TA
Sbjct: 130 RATLDADAARDGWPALHARLAGIDPATAARLAPNDSQRIQRALEVYLLTGQPMSALLAAP 189
Query: 186 -----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLP 228
+PS R +LH RI+ RF ML+ I+EV+++R++ +L+L LP
Sbjct: 190 PRDNDAAAGLRFVPVALEPSERAVLHARIAARFDAMLEAG-FIDEVERLRRRDDLHLGLP 248
Query: 229 SMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQ 288
SM+C+GYRQ WEY+DG D T+++K I ATRQL K+QLTWLR M E+I +DC +
Sbjct: 249 SMRCVGYRQAWEYLDGCTDYRTMRDKGIFATRQLCKRQLTWLRAMPERIVVDCCAPDATV 308
Query: 289 KILNLIKDIF 298
+ ++ ++ +
Sbjct: 309 RAVDALERVL 318
>sp|A2S552|MIAA_BURM9 tRNA dimethylallyltransferase OS=Burkholderia mallei (strain NCTC
10229) GN=miaA PE=3 SV=1
Length = 324
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 176/310 (56%), Gaps = 49/310 (15%)
Query: 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHL 96
+T +LGPTASGK++ AL ++ P EI+S+DSALVY MDIGT KP+ ER PHHL
Sbjct: 10 RTVACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRGMDIGTAKPTRDERAAVPHHL 69
Query: 97 IDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKL 156
IDI++P +YS +F DAL + I + + PLL GGTMLY++AL G+N LP A+ +
Sbjct: 70 IDIVDPADAYSAAEFRADALRLVAQIAARGRTPLLAGGTMLYYRALTQGLNDLPAADPDV 129
Query: 157 RTKFNIDINKYGISFLYDKLKLLDPVTAN------------------------------- 185
R + D + G L+ +L +DP TA
Sbjct: 130 RATLDADAARDGWPALHARLAGIDPATAARLAPNDSQRIQRALEVYLLTGQPMSALLAAP 189
Query: 186 -----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLP 228
+PS R +LH RI+ RF ML+ I+EV+++R++ +L+L LP
Sbjct: 190 PRDNDAAAGLRFVPVALEPSERAVLHARIAARFDAMLEAG-FIDEVERLRRRDDLHLGLP 248
Query: 229 SMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQ 288
SM+C+GYRQ WEY+DG D T+++K I ATRQL K+QLTWLR M E+I +DC +
Sbjct: 249 SMRCVGYRQAWEYLDGCTDYRTMRDKGIFATRQLCKRQLTWLRAMPERIVVDCCAPDATV 308
Query: 289 KILNLIKDIF 298
+ ++ ++ +
Sbjct: 309 RAVDALERVL 318
>sp|A3MN86|MIAA_BURM7 tRNA dimethylallyltransferase OS=Burkholderia mallei (strain NCTC
10247) GN=miaA PE=3 SV=1
Length = 324
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 176/310 (56%), Gaps = 49/310 (15%)
Query: 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHL 96
+T +LGPTASGK++ AL ++ P EI+S+DSALVY MDIGT KP+ ER PHHL
Sbjct: 10 RTVACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRGMDIGTAKPTRDERAAVPHHL 69
Query: 97 IDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKL 156
IDI++P +YS +F DAL + I + + PLL GGTMLY++AL G+N LP A+ +
Sbjct: 70 IDIVDPADAYSAAEFRADALRLVAQIAARGRTPLLAGGTMLYYRALTQGLNDLPAADPDV 129
Query: 157 RTKFNIDINKYGISFLYDKLKLLDPVTAN------------------------------- 185
R + D + G L+ +L +DP TA
Sbjct: 130 RATLDADAARDGWPALHARLAGIDPATAARLAPNDSQRIQRALEVYLLTGQPMSALLAAP 189
Query: 186 -----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLP 228
+PS R +LH RI+ RF ML+ I+EV+++R++ +L+L LP
Sbjct: 190 PRDNDAAAGLRFVPVALEPSERAVLHARIAARFDAMLEAG-FIDEVERLRRRDDLHLGLP 248
Query: 229 SMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQ 288
SM+C+GYRQ WEY+DG D T+++K I ATRQL K+QLTWLR M E+I +DC +
Sbjct: 249 SMRCVGYRQAWEYLDGCTDYRTMRDKGIFATRQLCKRQLTWLRAMPERIVVDCCAPDATV 308
Query: 289 KILNLIKDIF 298
+ ++ ++ +
Sbjct: 309 RAVDALERVL 318
>sp|B2JGD1|MIAA_BURP8 tRNA dimethylallyltransferase OS=Burkholderia phymatum (strain DSM
17167 / STM815) GN=miaA PE=3 SV=1
Length = 317
Score = 245 bits (626), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/305 (40%), Positives = 174/305 (57%), Gaps = 49/305 (16%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
+LGPTASGK++ AL + P EI+S+DSALVY +MDIGT KPS ER + PHHLIDI++
Sbjct: 12 LLGPTASGKTAAALAFAARAPVEIVSVDSALVYREMDIGTAKPSSEERAVAPHHLIDIVD 71
Query: 102 PTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
P +YS F DAL + I + +PLLVGGTMLY+KAL G+N LP A+ ++R +
Sbjct: 72 PVDAYSAADFRADALRLVGEIEARGNVPLLVGGTMLYYKALTQGLNDLPAADPEVRATLD 131
Query: 162 IDINKYGISFLYDKLKLLDPVTAN------------------------------------ 185
D + G L+ +L +D VTA
Sbjct: 132 ADAAREGWPALHARLAAVDAVTAARLAPNDSQRIQRALEVFMLTGQPMSALLAAPARSDD 191
Query: 186 ------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCI 233
+PS+R +LH RI+ RF ML + I+EV+++R + +L+ LP+M+C+
Sbjct: 192 LAKGYRFVPIALEPSDRSVLHARIAQRFDAMLAKG-FIDEVRRLRARGDLHPGLPAMRCV 250
Query: 234 GYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNL 293
GYRQ WEY+DG D +T+++K + ATRQL K+QLTWLR M E+I +DC + L
Sbjct: 251 GYRQAWEYLDGETDYDTMRDKGVFATRQLCKRQLTWLRAMPERIVVDCCAGDAAGLALQA 310
Query: 294 IKDIF 298
I+ +
Sbjct: 311 IERVI 315
>sp|Q39JB5|MIAA_BURS3 tRNA dimethylallyltransferase OS=Burkholderia sp. (strain 383)
GN=miaA PE=3 SV=1
Length = 324
Score = 244 bits (623), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 177/309 (57%), Gaps = 49/309 (15%)
Query: 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLI 97
T +LGPTASGK++ AL ++ P EI+S+DSALVY DMDIGT KPS ER PHHLI
Sbjct: 11 TIACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRDMDIGTAKPSRDERASVPHHLI 70
Query: 98 DIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLR 157
DII+P +YS F D L I I + + PLL GGTMLY+KAL G+N LP A+ +R
Sbjct: 71 DIIDPADAYSAASFRADTLRLIGEIAARGRTPLLAGGTMLYYKALTQGLNDLPGADPDVR 130
Query: 158 TKFNIDINKYGISFLYDKLKLLDPVTAN-------------------------------- 185
+ + + G L+ +L +DP TA
Sbjct: 131 ATLDAEAERDGWPALHARLAQVDPDTAARLAPNDSQRIQRALEVFMLSGQPMSVLLAAPR 190
Query: 186 ----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPS 229
+PS+R +LHKRI+ RF MLD I+EV+++R++ +L+ +LPS
Sbjct: 191 RTDDAAAAYRFVPVALEPSDRAVLHKRIAQRFDAMLDAG-FIDEVERLRRREDLHPDLPS 249
Query: 230 MKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQK 289
M+C+GYRQ WE++DG D T+++K I ATRQL K+Q+TWLR M E+I +DC+ + +
Sbjct: 250 MRCVGYRQAWEFLDGDTDYRTMRDKGIFATRQLCKRQITWLRAMPERIVVDCIAPDSTAR 309
Query: 290 ILNLIKDIF 298
L+ ++ +
Sbjct: 310 ALDALERVL 318
>sp|B4EDH3|MIAA_BURCJ tRNA dimethylallyltransferase OS=Burkholderia cepacia (strain J2315
/ LMG 16656) GN=miaA PE=3 SV=1
Length = 326
Score = 244 bits (622), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 177/309 (57%), Gaps = 49/309 (15%)
Query: 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLI 97
T +LGPTASGK++ AL ++ P EI+S+DSALVY DMDIGT KPS ER PHHLI
Sbjct: 13 TIACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRDMDIGTAKPSRDERASVPHHLI 72
Query: 98 DIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLR 157
DII+P +YS F D L I I + + PLL GGTMLY+KAL G+N LP A+ +R
Sbjct: 73 DIIDPADAYSAASFRADTLRLIGEIAARGRTPLLAGGTMLYYKALTQGLNDLPGADPDVR 132
Query: 158 TKFNIDINKYGISFLYDKLKLLDPVTAN-------------------------------- 185
+ + + G L+ +L +DP TA
Sbjct: 133 ATLDAEAERDGWPALHARLAQVDPDTAARLAPNDSQRIQRALEVFMLSGQPMSVLLAAPR 192
Query: 186 ----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPS 229
+PS+R +LHKRI+ RF MLD I+EV+++R++ +L+ +LPS
Sbjct: 193 RTDDAAAAYRFVPVALEPSDRAVLHKRIAQRFDAMLDAG-FIDEVERLRRREDLHPDLPS 251
Query: 230 MKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQK 289
M+C+GYRQ WE++DG D T+++K I ATRQL K+Q+TWLR M E+I +DC+ + +
Sbjct: 252 MRCVGYRQAWEFLDGDTDYRTMRDKGIFATRQLCKRQITWLRAMPERIVVDCIAPDSTAR 311
Query: 290 ILNLIKDIF 298
L+ ++ +
Sbjct: 312 ALDALERVL 320
>sp|A9AGA7|MIAA_BURM1 tRNA dimethylallyltransferase OS=Burkholderia multivorans (strain
ATCC 17616 / 249) GN=miaA PE=3 SV=1
Length = 325
Score = 243 bits (621), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 177/309 (57%), Gaps = 49/309 (15%)
Query: 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLI 97
T +LGPTASGK++ AL ++ P EI+S+DSALVY DMDIGT KP+ ER PHHLI
Sbjct: 11 TIACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRDMDIGTAKPTREERARVPHHLI 70
Query: 98 DIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLR 157
DII+P +YS F D L I I+ + PLL GGTMLY+KAL G+N LP A+ +R
Sbjct: 71 DIIDPADAYSAASFRADTLRLIGEIVARGNTPLLAGGTMLYYKALTQGLNDLPTADPAVR 130
Query: 158 TKFNIDINKYGISFLYDKLKLLDPVTAN-------------------------------- 185
+ + + + G L+ +L +DP TA
Sbjct: 131 AELDAEAARDGWPALHARLAQIDPATAARLAPNDAQRIQRALEVFMLSGQPMSALLAAPR 190
Query: 186 ----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPS 229
+PS+R +LH RI+ RF ML I+EV+++R++ +L+L LPS
Sbjct: 191 PADEAAAAYRFVPVALEPSDRAVLHARIAQRFDAMLAAG-FIDEVERLRRRDDLHLGLPS 249
Query: 230 MKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQK 289
M+C+GYRQ WE++DG ID T+++K I ATRQL K+Q+TWLR M E+I +DC+ + +
Sbjct: 250 MRCVGYRQAWEFLDGDIDYRTMRDKGIFATRQLCKRQITWLRAMPERIVVDCIAPDSTAR 309
Query: 290 ILNLIKDIF 298
L+ ++ +
Sbjct: 310 ALDALERVL 318
>sp|B0TU65|MIAA_SHEHH tRNA dimethylallyltransferase OS=Shewanella halifaxensis (strain
HAW-EB4) GN=miaA PE=3 SV=1
Length = 308
Score = 242 bits (617), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 181/296 (61%), Gaps = 45/296 (15%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
+ ++GPTASGK+++A+++ + CEIIS+DSAL+Y +MDIGT KP E+ PH LIDI
Sbjct: 10 ITLMGPTASGKTALAIELVKQYNCEIISVDSALIYKEMDIGTAKPDAAEQAAAPHRLIDI 69
Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
I+P KSYS F DAL I++IL + K PLLVGGTM+YFKAL +G++ LP A+ +R +
Sbjct: 70 IDPAKSYSAADFRRDALAQIEDILSRGKTPLLVGGTMMYFKALLEGLSPLPAADEVVRAQ 129
Query: 160 FNIDINKYGISFLYDKLKLLDPVTANQ--------------------------------- 186
+ ++G L+D+L+ +DPV+A +
Sbjct: 130 IACEAQEFGWQALHDQLREIDPVSAERIHPNDPQRLARALEVYRISGQSLTELTKTKSEA 189
Query: 187 -----------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGY 235
PS+R +LH+ I RFK ML EV++++ + +L+L+LPSM+C+GY
Sbjct: 190 FPYEAVQFAIAPSDRKVLHRAIETRFKTMLTLG-FTAEVERLKARGDLDLDLPSMRCVGY 248
Query: 236 RQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKIL 291
RQ W+Y+DG ID T+ EK+I+ATRQLAK+QLTWLR + I ++ ++ + ++
Sbjct: 249 RQCWQYLDGEIDYETMVEKAIVATRQLAKRQLTWLRGWPDLIWLESGAEDNLATVM 304
>sp|Q9JUU5|MIAA_NEIMA tRNA dimethylallyltransferase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=miaA PE=3 SV=1
Length = 313
Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 129/288 (44%), Positives = 168/288 (58%), Gaps = 51/288 (17%)
Query: 41 AILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDII 100
A+LGPTA GK+++ALKI+E +P EIIS+DSALVY DMDIGT KPS ER PHHLIDII
Sbjct: 8 ALLGPTAGGKTALALKIAETLPVEIISLDSALVYRDMDIGTAKPSASERAFVPHHLIDII 67
Query: 101 EPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKF 160
P ++YS +F ED I I + K PL+VGGTM+YF+AL G+N LP A+ LR
Sbjct: 68 TPVQTYSAARFVEDCTRLIGEITARGKYPLIVGGTMMYFRALTQGLNDLPEADACLRADL 127
Query: 161 NIDINKYGISFLYDKLKLLDPVTANQ---------------------------------- 186
+ YG+ FLY L+ +DP TA +
Sbjct: 128 DEQKQMYGLDFLYRTLQQVDPETACRLKPNDSQRIGRALEVYYLTGKPMSEHLGRQSPHT 187
Query: 187 -----------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKW-NLNLNLPSMKCIG 234
P NR LH+ I+ RF ML+Q I EV+ +R+++ +L + P+++C+G
Sbjct: 188 LPFDLHTAALIPENRARLHENIALRFHLMLEQG-FIGEVENLRRRYPSLTADSPAIRCVG 246
Query: 235 YRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCL 282
YRQ WEY+DG DR T EK I ATRQLAK+QLTWLR K +DC+
Sbjct: 247 YRQAWEYLDGATDRQTFIEKGIAATRQLAKRQLTWLR----KTPLDCV 290
>sp|B8CIX4|MIAA_SHEPW tRNA dimethylallyltransferase OS=Shewanella piezotolerans (strain
WP3 / JCM 13877) GN=miaA PE=3 SV=1
Length = 308
Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 182/301 (60%), Gaps = 46/301 (15%)
Query: 36 RKTKV-AILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
RK KV ++GPTASGK+++A+++ + CEIIS+DSAL+Y MD+G+ KP E + PH
Sbjct: 5 RKHKVITLMGPTASGKTALAIELVKNYDCEIISVDSALIYQQMDVGSAKPDAAELAVAPH 64
Query: 95 HLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANL 154
HLIDII+P SYS F +DAL I++I+ + K PLLVGGTM+YFKAL +G++ LP AN
Sbjct: 65 HLIDIIDPADSYSAADFRKDALLKIEDIISRGKTPLLVGGTMMYFKALIEGLSPLPGAND 124
Query: 155 KLRTKFNIDINKYGISFLYDKLKLLDPVTANQ---------------------------- 186
++R + ++ G L+D+LK +DPV A +
Sbjct: 125 EIRAQIAVEAQANGWQALHDQLKEVDPVAAARIHPNDPQRLARALEVFRISGKSLTELTK 184
Query: 187 ----------------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSM 230
P++R +LHK I RFK ML + EVKK++ + +L+L LPSM
Sbjct: 185 VKSEAFPYEAIQFAIAPNDRKVLHKAIETRFKAMLGLG-FVEEVKKLKSRDDLHLELPSM 243
Query: 231 KCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKI 290
+C+GYRQ W+++DG D T+ EK+I+ATRQLAK+QLTWLR + I ++ +N + +
Sbjct: 244 RCVGYRQCWQHLDGEYDYETMVEKAIVATRQLAKRQLTWLRGWPDLIWLESGAENNLDTV 303
Query: 291 L 291
L
Sbjct: 304 L 304
>sp|Q2SYY3|MIAA_BURTA tRNA dimethylallyltransferase OS=Burkholderia thailandensis (strain
E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=miaA
PE=3 SV=1
Length = 324
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 176/310 (56%), Gaps = 49/310 (15%)
Query: 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHL 96
+T +LGPTASGK++ AL ++ P EI+S+DSALVY MDIGT KP+ ER PHHL
Sbjct: 10 RTVACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRGMDIGTAKPTREERAAVPHHL 69
Query: 97 IDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKL 156
IDI++P +YS F DAL + I + + PLL GGTMLY+KAL G+N LP A+ +
Sbjct: 70 IDIVDPADAYSAAGFRADALRVVAEIAARGRTPLLAGGTMLYYKALTQGLNDLPAADPDV 129
Query: 157 RTKFNIDINKYGISFLYDKLKLLDPVTAN------------------------------- 185
R + + + G L+ +L +DP TA
Sbjct: 130 RATLDAEAARDGWPALHARLASVDPATAARLAPNDAQRIQRALEVYLLTGRPMSALLAAP 189
Query: 186 -----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLP 228
+PS+R +LH RI+ RF ML+ I+EV+++R++ +L+L LP
Sbjct: 190 PRNDDAAAGLRFVPVALEPSDRAVLHARIAARFDAMLEAG-FIDEVERLRRRDDLHLGLP 248
Query: 229 SMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQ 288
SM+C+GYRQ WEY++G+ D +++K I ATRQL K+QLTWLR M +I +DC ++
Sbjct: 249 SMRCVGYRQAWEYLEGVTDYRMMRDKGIFATRQLCKRQLTWLRAMPARIVVDCCAQDATA 308
Query: 289 KILNLIKDIF 298
+ ++ ++ +
Sbjct: 309 RAVDALERVL 318
>sp|A1VLE3|MIAA_POLNA tRNA dimethylallyltransferase OS=Polaromonas naphthalenivorans
(strain CJ2) GN=miaA PE=3 SV=1
Length = 331
Score = 240 bits (613), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 176/307 (57%), Gaps = 52/307 (16%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
+A+ GPTASGK++ AL I+E++P EIIS+DSALVY MDIGT KPS E PHHLIDI
Sbjct: 19 IALAGPTASGKTAAALAIAEHVPVEIISVDSALVYRGMDIGTAKPSAEELAAVPHHLIDI 78
Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
+P +YS +F DA I I + +L LLVGGTMLYFKAL DG++++P A+ +R
Sbjct: 79 RDPLHAYSAAEFVLDAQRLIAQISARGRLALLVGGTMLYFKALFDGLDEMPKADAAVRAV 138
Query: 160 FNIDINKYGISFLYDKLKLLDPVTAN---------------------------------- 185
I+ + G L+ +L +DPVTA
Sbjct: 139 LAIEAAEKGWPALHAELAQVDPVTAARLAPNDSQRISRALEVFRVSGQPLSFFQQRNASK 198
Query: 186 -----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLP 228
+P++R LH RI+ RF ML ++EV+ +R + +L +LP
Sbjct: 199 NIADNAGGTSAATLISLEPTDRAWLHGRIAQRFDAMLASG-FVDEVRALRARGDLTPDLP 257
Query: 229 SMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQ 288
+M+C+GYRQ WE +DG + L++K + ATRQLAK+Q+TWLR+M ++ + C + ++
Sbjct: 258 AMRCVGYRQAWEALDGTSPMSELRDKGVFATRQLAKRQITWLRSMPQRRVVACDDPTALE 317
Query: 289 KILNLIK 295
++L+L+K
Sbjct: 318 QVLDLVK 324
>sp|A2SHF3|MIAA_METPP tRNA dimethylallyltransferase OS=Methylibium petroleiphilum (strain
PM1) GN=miaA PE=3 SV=1
Length = 327
Score = 239 bits (611), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/305 (39%), Positives = 173/305 (56%), Gaps = 50/305 (16%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
+ GPTASGK++ AL +++ +P E++S+DSALVY MDIGT KPS ER + PHHLID+IE
Sbjct: 16 LAGPTASGKTAAALALAQVLPVEVVSVDSALVYRGMDIGTAKPSAAERALVPHHLIDLIE 75
Query: 102 PTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
P +YS QF DA ++ I + +LPLLVGGTMLYFKAL DGI+ LPPA+ LR +
Sbjct: 76 PCAAYSAAQFVADARRAMAEIRARGRLPLLVGGTMLYFKALFDGIDALPPADPALRAALD 135
Query: 162 IDINKYGISFLYDKLKLLDPVTAN------------------------------------ 185
+ G L+ +L +DPVTA
Sbjct: 136 AEARTRGWPALHAELATVDPVTAARLAPNDAQRVQRALEVWRATGQPLSSFHSGRFDVAS 195
Query: 186 -----------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG 234
+P++R LH RI +RF ML Q L++EV+++R + +L+ +LP+M+C+G
Sbjct: 196 AAPPRTALISLEPTDRGWLHARIGERFAAML-QAGLVDEVRRLRARGDLHADLPAMRCVG 254
Query: 235 YRQTWEYIDG--LIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILN 292
YRQ W +D D L+ + ATRQLAK+QLTWLR M + T+ C + +++
Sbjct: 255 YRQAWAALDAGDPPDLARLQAEGAAATRQLAKRQLTWLRGMPWRRTVACDAPDASAQVVA 314
Query: 293 LIKDI 297
L + +
Sbjct: 315 LARQL 319
>sp|A0K4U0|MIAA_BURCH tRNA dimethylallyltransferase OS=Burkholderia cenocepacia (strain
HI2424) GN=miaA PE=3 SV=1
Length = 324
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/312 (41%), Positives = 182/312 (58%), Gaps = 50/312 (16%)
Query: 36 RKTKVA-ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
R T +A +LGPTASGK++ AL ++ P EI+S+DSALVY DMDIGT KPS ER PH
Sbjct: 8 RPTTIACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRDMDIGTAKPSREERASVPH 67
Query: 95 HLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANL 154
HLIDII+P +YS +F D L I I+ + + PLL GGTMLY+KAL G+N LP A+
Sbjct: 68 HLIDIIDPADAYSAAEFRADTLRLIGEIVARGRTPLLAGGTMLYYKALTQGLNDLPGADP 127
Query: 155 KLRTKFNIDINKYGISFLYDKLKLLDPVTAN----------------------------- 185
++R + D + G L+ +L +DP TA
Sbjct: 128 EVRAALDADAARDGWPALHARLAQVDPDTAARLAPNDSQRIQRALEIFMLSGQPMSALLA 187
Query: 186 -------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLN 226
+PS+R +LH RI+ RF MLD I+EV+++R++ +L+ +
Sbjct: 188 APRRTDDAAAAYRFVPVALEPSDRAVLHTRIAQRFDAMLDAG-FIDEVERLRRRDDLHPD 246
Query: 227 LPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNC 286
LPSM+C+GYRQ WEY+DG D T+++K I ATRQL K+Q+TWLR M E+I +DC+ +
Sbjct: 247 LPSMRCVGYRQAWEYLDGDTDYRTMRDKGIFATRQLCKRQITWLRAMPERIVVDCIAPDA 306
Query: 287 VQKILNLIKDIF 298
+ L+ ++ +
Sbjct: 307 TARALDALERVL 318
>sp|Q1BYW1|MIAA_BURCA tRNA dimethylallyltransferase OS=Burkholderia cenocepacia (strain
AU 1054) GN=miaA PE=3 SV=1
Length = 324
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/312 (41%), Positives = 182/312 (58%), Gaps = 50/312 (16%)
Query: 36 RKTKVA-ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
R T +A +LGPTASGK++ AL ++ P EI+S+DSALVY DMDIGT KPS ER PH
Sbjct: 8 RPTTIACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRDMDIGTAKPSREERASVPH 67
Query: 95 HLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANL 154
HLIDII+P +YS +F D L I I+ + + PLL GGTMLY+KAL G+N LP A+
Sbjct: 68 HLIDIIDPADAYSAAEFRADTLRLIGEIVARGRTPLLAGGTMLYYKALTQGLNDLPGADP 127
Query: 155 KLRTKFNIDINKYGISFLYDKLKLLDPVTAN----------------------------- 185
++R + D + G L+ +L +DP TA
Sbjct: 128 EVRAALDADAARDGWPALHARLAQVDPDTAARLAPNDSQRIQRALEIFMLSGQPMSALLA 187
Query: 186 -------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLN 226
+PS+R +LH RI+ RF MLD I+EV+++R++ +L+ +
Sbjct: 188 APRRTDDAAAAYRFVPVALEPSDRAVLHTRIAQRFDAMLDAG-FIDEVERLRRRDDLHPD 246
Query: 227 LPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNC 286
LPSM+C+GYRQ WEY+DG D T+++K I ATRQL K+Q+TWLR M E+I +DC+ +
Sbjct: 247 LPSMRCVGYRQAWEYLDGDTDYRTMRDKGIFATRQLCKRQITWLRAMPERIVVDCIAPDA 306
Query: 287 VQKILNLIKDIF 298
+ L+ ++ +
Sbjct: 307 TARALDALERVL 318
>sp|B1JW31|MIAA_BURCC tRNA dimethylallyltransferase OS=Burkholderia cenocepacia (strain
MC0-3) GN=miaA PE=3 SV=1
Length = 324
Score = 238 bits (606), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 182/312 (58%), Gaps = 50/312 (16%)
Query: 36 RKTKVA-ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
R T +A +LGPTASGK++ AL ++ P EI+S+DSALVY DMDIGT KPS ER PH
Sbjct: 8 RPTTIACLLGPTASGKTAAALALAARRPIEIVSVDSALVYRDMDIGTAKPSRDERASVPH 67
Query: 95 HLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANL 154
HLIDII+P +YS +F D L I I+ + + PLL GGTMLY+KAL G+N LP A+
Sbjct: 68 HLIDIIDPADAYSAAEFRADTLRLIGEIVARGRTPLLAGGTMLYYKALTQGLNDLPGADP 127
Query: 155 KLRTKFNIDINKYGISFLYDKLKLLDPVTAN----------------------------- 185
++R + D + G L+ +L +DP TA
Sbjct: 128 EVRAALDADAARDGWPALHARLAQVDPDTAARLAPNDSQRIQRALEIFMLSGQPMSALLA 187
Query: 186 -------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLN 226
+PS+R +LH RI+ RF MLD I+EV+++R++ +L+ +
Sbjct: 188 APRRTDDAAAAYRFVPVALEPSDRAVLHARIAQRFDAMLDAG-FIDEVERLRRRDDLHPD 246
Query: 227 LPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNC 286
LPSM+C+GYRQ WE++DG D T+++K I ATRQL K+Q+TWLR M E+I +DC+ +
Sbjct: 247 LPSMRCVGYRQAWEFLDGDTDYRTMRDKGIFATRQLCKRQITWLRAMPERIVVDCIAPDS 306
Query: 287 VQKILNLIKDIF 298
+ L+ ++ +
Sbjct: 307 TARALDALERVL 318
>sp|Q3SIR0|MIAA_THIDA tRNA dimethylallyltransferase OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=miaA PE=3 SV=1
Length = 313
Score = 238 bits (606), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 117/301 (38%), Positives = 168/301 (55%), Gaps = 45/301 (14%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID 98
V ++GPTASGK+++A+ + P EIIS+DSALVY MD+GT KP PHHL+D
Sbjct: 9 AVFLMGPTASGKTALAVSLRSRFPFEIISVDSALVYRGMDVGTAKPDAATLARAPHHLLD 68
Query: 99 IIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRT 158
I EP ++YS FC+DA + I + ++PLLVGGTMLYF+AL G++ LP A+ LR
Sbjct: 69 IREPNETYSAAAFCDDARARMAAITARGRVPLLVGGTMLYFRALLQGLDDLPRADAALRK 128
Query: 159 KFNIDINKYGISFLYDKLKLLDPVTANQ-------------------------------- 186
+ D + G L+ +L LDP TA +
Sbjct: 129 RLEQDAAERGWPALHAELAALDPATAARLAPNDSQRIGRALEIVELTGRPMSAQLAQTPR 188
Query: 187 ------------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG 234
PS+R LH+RI +RF ML+ L++EV+ +R+ L+ +P+M+ +G
Sbjct: 189 ALPYDVLQLALVPSDRAALHRRIGERFDAMLEAG-LVDEVEMLRRNHVLDSTMPAMRAVG 247
Query: 235 YRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLI 294
YRQ W Y+DG ID L+E+ + ATRQLAK+QLTWLR+ +T+DCL + + L+
Sbjct: 248 YRQAWAYLDGDIDLEALREQGVAATRQLAKRQLTWLRSWPGAVTLDCLADDLESRAAALV 307
Query: 295 K 295
Sbjct: 308 A 308
>sp|A3QAD9|MIAA_SHELP tRNA dimethylallyltransferase OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=miaA PE=3 SV=1
Length = 308
Score = 238 bits (606), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 119/279 (42%), Positives = 175/279 (62%), Gaps = 45/279 (16%)
Query: 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLI 97
T + ++GPTASGK+++A+ ++E CEIIS+DSAL+Y DMDIG+ KP+ E PH LI
Sbjct: 8 TIITLMGPTASGKTALAMALAEQHNCEIISVDSALIYRDMDIGSAKPTQEELSRAPHRLI 67
Query: 98 DIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLR 157
DI +P++SYS F DA+ +I+ IL K PLLVGGTMLYFKAL +G++ LP A+ +R
Sbjct: 68 DIRDPSESYSAADFRSDAIANIEAILAAGKTPLLVGGTMLYFKALLEGLSPLPSADEAIR 127
Query: 158 TKFNIDINKYGISFLYDKLKLLDPVTANQ------------------------------- 186
+ ++ G L+D+L+ +DPV+A++
Sbjct: 128 AEIAKEVEAKGWQALHDELRQIDPVSADRIHPNDPQRLSRAIEVYRISGKSLTELTQVKA 187
Query: 187 -------------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCI 233
P +R +LH I++RFK ML+Q + EV++++ + +L+L+LPSM+C+
Sbjct: 188 EALPYKVVQFGIAPKDRKVLHLAIAERFKLMLNQG-FVEEVQRLKARADLHLDLPSMRCV 246
Query: 234 GYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRN 272
GYRQ W+Y+DG D +T+ EKSI+ATRQLAK+QLTWLR
Sbjct: 247 GYRQVWQYLDGEYDYDTMVEKSIVATRQLAKRQLTWLRG 285
>sp|A8FRD4|MIAA1_SHESH tRNA dimethylallyltransferase 1 OS=Shewanella sediminis (strain
HAW-EB3) GN=miaA1 PE=3 SV=1
Length = 303
Score = 237 bits (605), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 122/280 (43%), Positives = 172/280 (61%), Gaps = 45/280 (16%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
+ ++GPTASGK+++A+ + + CEIIS+DSAL+Y MDIGT KPS E + PH LIDI
Sbjct: 5 ITLMGPTASGKTALAIDLVQKHNCEIISVDSALIYRSMDIGTAKPSADELALAPHRLIDI 64
Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
+P +SYS F DAL I+ ILK K PLLVGGTM+YFKAL +G++ LP A+ LR +
Sbjct: 65 RDPAESYSAADFRADALHEIEQILKAGKTPLLVGGTMMYFKALLEGLSPLPAADEALRAQ 124
Query: 160 FNIDINKYGISFLYDKLKLLDPVTANQ--------------------------------- 186
++ + G ++D+LK LDPV++ +
Sbjct: 125 IILEAEQRGWQDMHDELKRLDPVSSERIHPNDPQRLIRALEVCRISGKSMTELSQIKSEP 184
Query: 187 -----------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGY 235
P +R +LH I +RFK ML+Q ++EV+ ++K+ +LNL LPSM+C+GY
Sbjct: 185 LPYDVVQFAISPKDRKVLHISIEERFKLMLNQG-FVDEVRALKKRSDLNLALPSMRCVGY 243
Query: 236 RQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNE 275
RQ W+Y+DG D +T+ EK+I+ATRQLAK+QLTWLR E
Sbjct: 244 RQCWQYLDGEFDYDTMVEKAIVATRQLAKRQLTWLRGWPE 283
>sp|Q87VJ3|MIAA_PSESM tRNA dimethylallyltransferase OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=miaA PE=3 SV=1
Length = 323
Score = 237 bits (604), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 180/311 (57%), Gaps = 56/311 (18%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
++GPTA+GK+ +A+++S+ +PCE+IS+DSALVY MDIGT KPS + PH LIDI++
Sbjct: 10 LMGPTAAGKTDLAIELSKVLPCELISVDSALVYRGMDIGTAKPSKAQLAEFPHRLIDILD 69
Query: 102 PTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
P +SYS F DAL ++ I + +PLLVGGTMLYFKAL DG+ +P AN +R +
Sbjct: 70 PAQSYSAADFRSDALAAMAQITARGNIPLLVGGTMLYFKALLDGLADMPAANAAVRAQLE 129
Query: 162 IDINKYGISFLYDKLKLLDPVTA-----NQP----------------------------- 187
D +G L+D+L ++DPV+A N P
Sbjct: 130 ADAQAFGWQSLHDQLAVVDPVSAARIHPNDPQRLIRALEVYRVSGMSMTAHREQQTAQST 189
Query: 188 ---------------------SNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLN 226
++R +LH+RI+ RF++MLDQ L +EV +R + +L+
Sbjct: 190 EAAASGCQQLPYTVANLAIAPADRKVLHQRIALRFEQMLDQGFL-DEVLALRSRGDLHAG 248
Query: 227 LPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNC 286
LPS++ +GYRQ W+++DG + R ++E+ IIATRQLAK+Q TWLR+ ++ +D L +
Sbjct: 249 LPSIRAVGYRQVWDHLDGKLTREEMQERGIIATRQLAKRQFTWLRSWDDLHWLDSLASDN 308
Query: 287 VQKILNLIKDI 297
+ + L + +
Sbjct: 309 LSRALKYLGSV 319
>sp|Q46XK2|MIAA_CUPPJ tRNA dimethylallyltransferase OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=miaA PE=3 SV=1
Length = 318
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/304 (41%), Positives = 176/304 (57%), Gaps = 51/304 (16%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
V +LGPTASGK++ AL +++ P EIIS+DSALVY +MDIGT KP+ E PHHLIDI
Sbjct: 13 VCLLGPTASGKTAAALALAQQAPVEIISLDSALVYREMDIGTAKPTREELASVPHHLIDI 72
Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
I+PT SYS QF DA I I + PL+VGGTMLY+KAL G+N LP A+ +R K
Sbjct: 73 IDPTDSYSAAQFVTDAERLIAEIRSRGHQPLIVGGTMLYYKALTQGLNDLPQADPAVRAK 132
Query: 160 FNIDINKYGISFLYDKLKLLDPVTAN---------------------------------- 185
+ + G L+ L +DPVTA
Sbjct: 133 LDELAAERGWPALHAMLAEVDPVTAARLAPNDAQRIQRALEIHRLSGQPMSELLARQADG 192
Query: 186 ----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPS 229
+PS+R +LH RI+ R+ ML I EV+++R++ +L+ LPS
Sbjct: 193 RTFTGAADQRYRVIALEPSDRAVLHARIAARYDAMLAGG-FIEEVERLRRRGDLHPGLPS 251
Query: 230 MKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQK 289
++C+GYRQ WEY+DG D T++E+ I+ATRQL K+Q+TWLR+ E++++DC+ + VQ+
Sbjct: 252 IRCVGYRQVWEYLDGDTDYATMRERGIVATRQLCKRQITWLRSTPERLSVDCVAPDYVQQ 311
Query: 290 ILNL 293
+ L
Sbjct: 312 VARL 315
>sp|Q7MBE2|MIAA_CHRVO tRNA dimethylallyltransferase OS=Chromobacterium violaceum (strain
ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB
9131 / NCTC 9757) GN=miaA PE=3 SV=1
Length = 325
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/303 (41%), Positives = 175/303 (57%), Gaps = 49/303 (16%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
++GPTASGK+ +AL+++ P EI+S+DSALVY DMDIGT KP+ E PHHLID+I
Sbjct: 10 LMGPTASGKTGLALELARRFPVEIVSVDSALVYRDMDIGTAKPTAEEMAACPHHLIDVIS 69
Query: 102 PTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
P +SYS QF DA I +I + KLPLLVGGTMLY+KAL +G++ LP A+ LR + +
Sbjct: 70 PLQSYSAAQFHADANRLIADIQARGKLPLLVGGTMLYYKALLEGLSDLPQADAALRAELD 129
Query: 162 IDINKYGISFLYDKLKLLDPVTANQ----------------------------------- 186
D G ++ +L LDP TA++
Sbjct: 130 ADAALLGWPAMHARLAELDPATASRLNPNDSQRIHRALEVCLLSGKPMSELIAQGKEAAA 189
Query: 187 ----------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKW-NLNLNLPSMKCIGY 235
P R LH RI++RF+ ML+Q L +EV ++R K+ L LNLPSM+C+GY
Sbjct: 190 GFRFLPLALVPRERGWLHARIAERFRIMLEQGFL-DEVSRLRAKYPELTLNLPSMRCVGY 248
Query: 236 RQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIK 295
RQ WE+ DGL + E+ + ATRQLAK+QLTW R+++ I +D +++ + +L
Sbjct: 249 RQAWEHQDGLYGHDEFVERGVAATRQLAKRQLTWTRSLD-AIPVDA-QRDGLAGLLGDAV 306
Query: 296 DIF 298
D F
Sbjct: 307 DDF 309
>sp|Q4ZYY1|MIAA_PSEU2 tRNA dimethylallyltransferase OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=miaA PE=3 SV=1
Length = 323
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 182/311 (58%), Gaps = 56/311 (18%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
++GPTA+GK+ +A+++++ +PCE+IS+DSALVY MDIGT KPS + PH LIDI++
Sbjct: 10 LMGPTAAGKTDLAIELTKVLPCELISVDSALVYRGMDIGTAKPSKTQLAEHPHRLIDILD 69
Query: 102 PTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
P +SYS F DAL ++ I + +PLLVGGTMLYFKAL DG+ +P A+ ++R +
Sbjct: 70 PAQSYSAADFRSDALAAMAEITARGNIPLLVGGTMLYFKALLDGLADMPAADAQVRAQLE 129
Query: 162 IDINKYGISFLYDKLKLLDPVTA-----NQP----------------------------- 187
D +G L+D+L ++DPV+A N P
Sbjct: 130 ADAQAFGWQALHDQLAVVDPVSAARIHPNDPQRLIRALEVYRVSGMSMTAHREQQTAQST 189
Query: 188 ---------------------SNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLN 226
++R +LH+RI+ RF++MLDQ L +EV +R + +L+
Sbjct: 190 EAAASGRQQLPYTVANLAIAPADRKVLHQRIALRFEQMLDQGFL-DEVLALRSRGDLHSG 248
Query: 227 LPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNC 286
LPS++ +GYRQ W+++DG + R+ ++E+ IIATRQLAK+Q TWLR+ ++ +D L +
Sbjct: 249 LPSIRAVGYRQVWDHLDGKLTRDEMQERGIIATRQLAKRQFTWLRSWDDLHWLDSLASDN 308
Query: 287 VQKILNLIKDI 297
+ + L + +
Sbjct: 309 LSRALKYLGSV 319
>sp|Q1H1I4|MIAA_METFK tRNA dimethylallyltransferase OS=Methylobacillus flagellatus
(strain KT / ATCC 51484 / DSM 6875) GN=miaA PE=3 SV=1
Length = 315
Score = 235 bits (599), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 175/300 (58%), Gaps = 47/300 (15%)
Query: 33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREIT 92
L+ + + ++GPTASGK+ +A+++ + +P EIIS+DSALVY DMDIGT KP +
Sbjct: 2 LISQPPAIFLMGPTASGKTGLAVELVQAMPLEIISVDSALVYQDMDIGTAKPGQEVLQRA 61
Query: 93 PHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPA 152
PHHLID+I+P + YS QF EDAL + +I + K PLLVGGTMLYF+ L G+ LP A
Sbjct: 62 PHHLIDVIDPMQVYSAAQFREDALRLMADITARGKAPLLVGGTMLYFRTLEQGLGGLPEA 121
Query: 153 NLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN--------------------------- 185
+ ++R + + + K G ++ KL +DP TA
Sbjct: 122 DAQVRAELDREAAKIGWPGMHAKLAAIDPETAARLQPADSQRIQRALEVYRLTGKSMTAL 181
Query: 186 ------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKW-NLNLN 226
QPS+R +LH RI++RF M+ LL EV+ + KK+ L+ +
Sbjct: 182 HRQQAAEILPYRLLKIALQPSDRSVLHARIAERFVAMMKGGLL-EEVQGLLKKYPGLHPD 240
Query: 227 LPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNC 286
+ SM+C+GYRQT EY+ G ID K + I ATRQLAK+QLTWLR M++ + +DCLE++
Sbjct: 241 MTSMRCVGYRQTLEYLAGNIDDEAWKAQGIAATRQLAKRQLTWLRGMDDTLVLDCLEQDV 300
>sp|Q5WTA1|MIAA_LEGPL tRNA dimethylallyltransferase OS=Legionella pneumophila (strain
Lens) GN=miaA PE=3 SV=1
Length = 313
Score = 235 bits (599), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 170/301 (56%), Gaps = 45/301 (14%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
++GPTASGK+ +A ++ + P EIIS+DSA++Y DM+IGT KPSI E + PH+LIDI +
Sbjct: 8 LMGPTASGKTGLACELLTHFPFEIISVDSAMIYRDMNIGTAKPSIHELQSAPHYLIDIKD 67
Query: 102 PTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
P +SYS QFC DAL I+K+ +PLLVGGTM+YF AL+ G+ LP A+ +R +
Sbjct: 68 PVESYSAAQFCTDALSLCAAIIKRGNIPLLVGGTMMYFNALQKGLATLPEADEAVRKRLE 127
Query: 162 IDINKYGISFLYDKLKLLDPVTANQ----------------------------------- 186
+ G FLY KL LDPVTA +
Sbjct: 128 EEALSQGWDFLYQKLSQLDPVTAARIHAHDTQRIQRALEVYYLTGSTLSTYLTGPHEQPD 187
Query: 187 ---------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQ 237
P R LH+RI+ RF ML + I EV++++ KW + +NLPSM+C+GYRQ
Sbjct: 188 YCFVNLALFPEQRSWLHERIAQRFDAMLSEG-FIEEVQQLQAKWPIQINLPSMRCVGYRQ 246
Query: 238 TWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIKDI 297
EY+ G D T++EK I ATRQLAK+QLTWLR+ + D I+ I++I
Sbjct: 247 ILEYLAGHYDYETMREKGIAATRQLAKRQLTWLRHWEGALFYDSQNVGFNTDIIAKIREI 306
Query: 298 F 298
Sbjct: 307 L 307
>sp|Q5X1J2|MIAA_LEGPA tRNA dimethylallyltransferase OS=Legionella pneumophila (strain
Paris) GN=miaA PE=3 SV=1
Length = 313
Score = 235 bits (599), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 121/283 (42%), Positives = 164/283 (57%), Gaps = 45/283 (15%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
++GPTASGK+ +A ++ + P EIIS+DSA++Y DM+IGT KPSI E + PH+LIDI +
Sbjct: 8 LMGPTASGKTGLACELLTHFPFEIISVDSAMIYRDMNIGTAKPSIHELQRAPHYLIDIKD 67
Query: 102 PTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
P +SYS QFC DAL I+K+ +PLLVGGTM+YF AL+ G+ LP A+ +R +
Sbjct: 68 PVESYSAAQFCTDALSLCAEIIKRGNIPLLVGGTMMYFNALQKGLATLPEADEAVRKRLE 127
Query: 162 IDINKYGISFLYDKLKLLDPVTANQ----------------------------------- 186
+ G FLY KL LDPVTA +
Sbjct: 128 EEALSQGWDFLYQKLSQLDPVTAARIHAHDTQRIQRALEVYYLTGSTLSTYLTGPHVQPD 187
Query: 187 ---------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQ 237
P R LH+RI+ RF ML + I EV++++ KW + +NLPSM+C+GYRQ
Sbjct: 188 YYFVNLALFPEQRSWLHERIAQRFDAMLSEG-FIEEVQQLQAKWPIQINLPSMRCVGYRQ 246
Query: 238 TWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITID 280
EY+ G D T++EK I ATRQLAK+QLTWLR+ + D
Sbjct: 247 ILEYLAGHYDYETMREKGIAATRQLAKRQLTWLRHWEGALFYD 289
>sp|Q48P03|MIAA_PSE14 tRNA dimethylallyltransferase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=miaA PE=3 SV=1
Length = 323
Score = 234 bits (597), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 180/311 (57%), Gaps = 56/311 (18%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
++GPTA+GK+ +A+++S+ +PCE+IS+DSALVY MDIGT KPS + PH LIDI++
Sbjct: 10 LMGPTAAGKTDLAIELSKVLPCELISVDSALVYRGMDIGTAKPSKAQLAEYPHRLIDILD 69
Query: 102 PTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
P +SYS F DAL ++ I + +PLLVGGTMLYFKAL G+ +P A+ ++R +
Sbjct: 70 PAQSYSAADFRSDALAAMAEITARGNIPLLVGGTMLYFKALLHGLADMPAADAQVRAQLE 129
Query: 162 IDINKYGISFLYDKLKLLDPVTA-----NQP----------------------------- 187
D YG L+D+L ++DPV+A N P
Sbjct: 130 ADAQAYGWQSLHDQLAVVDPVSAARIHPNDPQRLIRALEVYRVSGMSMTAHREQQTAQST 189
Query: 188 ---------------------SNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLN 226
++R +LH+RI+ RF++MLDQ L +EV +R + +L+
Sbjct: 190 EAAASGRQQLPYTVANLAIAPADRKVLHQRIALRFEQMLDQGFL-DEVLALRSRGDLHSG 248
Query: 227 LPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNC 286
LPS++ +GYRQ W+++DG + R+ ++E+ IIATRQLAK+Q TWLR+ + +D L +
Sbjct: 249 LPSIRAVGYRQVWDHLDGKLTRDEMQERGIIATRQLAKRQFTWLRSWEDLHWLDSLASDN 308
Query: 287 VQKILNLIKDI 297
+ + L + +
Sbjct: 309 LSRALKYLGSV 319
>sp|A5IAM8|MIAA_LEGPC tRNA dimethylallyltransferase OS=Legionella pneumophila (strain
Corby) GN=miaA PE=3 SV=1
Length = 313
Score = 234 bits (597), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 170/301 (56%), Gaps = 45/301 (14%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
++GPTASGK+ +A ++ + P EIIS+DSA++Y DM+IGT KPSI E + PH+LIDI +
Sbjct: 8 LMGPTASGKTGLACELLTHFPFEIISVDSAMIYRDMNIGTAKPSIHELQRAPHYLIDIKD 67
Query: 102 PTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
P +SYS QFC DAL I+K+ +PLLVGGTM+YF AL+ G+ LP A+ +R +
Sbjct: 68 PVESYSAAQFCTDALSLCAEIIKRGNIPLLVGGTMMYFNALQKGLATLPEADEAVRKRLE 127
Query: 162 IDINKYGISFLYDKLKLLDPVTANQ----------------------------------- 186
+ G FLY KL LDPVTA +
Sbjct: 128 EEALSQGWDFLYQKLSQLDPVTAARIHAHDTQRIQRALEVYYLTGSTLSTYLTGPHEQPD 187
Query: 187 ---------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQ 237
P R LH+RI+ RF ML + I EV++++ KW + +NLP+M+C+GYRQ
Sbjct: 188 YYFVNLALFPEQRSWLHERIAQRFDAMLSEG-FIEEVQQLQAKWPIQINLPAMRCVGYRQ 246
Query: 238 TWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIKDI 297
EY+ G D T++EK I ATRQLAK+QLTWLR+ + D I+ I++I
Sbjct: 247 ILEYLAGHYDYETMREKGIAATRQLAKRQLTWLRHWEGALFYDSQNVGFNTDIIAKIREI 306
Query: 298 F 298
Sbjct: 307 L 307
>sp|B3R6B8|MIAA_CUPTR tRNA dimethylallyltransferase OS=Cupriavidus taiwanensis (strain R1
/ LMG 19424) GN=miaA PE=3 SV=1
Length = 322
Score = 233 bits (595), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 126/304 (41%), Positives = 172/304 (56%), Gaps = 51/304 (16%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
V +LGPTASGK++ AL ++ P EIIS+DSALVY +MDIGT KP+ E + PHHLIDI
Sbjct: 15 VCLLGPTASGKTAAALALAADAPVEIISLDSALVYREMDIGTAKPTREELAVAPHHLIDI 74
Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
I+P SYS QF DA I I + +PL+VGGTMLY+KAL G+N LP A+ LR +
Sbjct: 75 IDPADSYSAAQFVADAERLIGEIHARGHVPLIVGGTMLYYKALTQGLNDLPQADAALRAE 134
Query: 160 FNIDINKYGISFLYDKLKLLDPVTAN---------------------------------- 185
+ + G L+ L +DPVTA
Sbjct: 135 LDQLAAERGWPALHAMLAEVDPVTAARLAPNDAQRIQRALEIHRLSGQPMSALLARQAEG 194
Query: 186 ----------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPS 229
+PS+R LH RI+ R+ ML Q I+EV+++R + +L+ LPS
Sbjct: 195 RTFAGAADQRYRVIALEPSDRLALHHRIARRYDAMLAQG-FIDEVERLRARGDLHPGLPS 253
Query: 230 MKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQK 289
++C+GYRQ WEY+DG D T++E+ I ATRQL K+QLTWLR+ E+ +DCL + V +
Sbjct: 254 IRCVGYRQVWEYLDGEADFATMRERGIAATRQLCKRQLTWLRSTPERRVVDCLATDYVDQ 313
Query: 290 ILNL 293
+ L
Sbjct: 314 VRRL 317
>sp|B4RL47|MIAA_NEIG2 tRNA dimethylallyltransferase OS=Neisseria gonorrhoeae (strain
NCCP11945) GN=miaA PE=3 SV=1
Length = 313
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/287 (43%), Positives = 164/287 (57%), Gaps = 51/287 (17%)
Query: 42 ILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE 101
+LGPTA GK+++ALKI+E +P EIIS+DSAL+Y MDIGT KPS ER PHHLIDII
Sbjct: 9 LLGPTACGKTALALKIAETLPVEIISLDSALLYTGMDIGTAKPSASERAFVPHHLIDIIT 68
Query: 102 PTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFN 161
P ++YS +F ED I + K PL+VGGTM+YF+AL G+N LP A+ LR +
Sbjct: 69 PVQTYSAARFVEDCTRLTGEITARGKCPLIVGGTMMYFRALTQGLNDLPEADACLRADLD 128
Query: 162 IDINKYGISFLYDKLKLLDPVTANQ----------------------------------- 186
YG+ FLY L+ +DP TA +
Sbjct: 129 EQKQMYGLDFLYRTLQKVDPETACRLKPNDSQRIGRALEVYYLTGRPMSAHLNGQPEHTL 188
Query: 187 ----------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKW-NLNLNLPSMKCIGY 235
P NR LH+ I+ RF ML+Q I EV+ +R+++ L + P+++C+GY
Sbjct: 189 PFELYTAALIPENRARLHENIALRFHLMLEQG-FIGEVENLRRRYPGLTADSPAIRCVGY 247
Query: 236 RQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCL 282
RQ WE++DG DR T EK I ATRQLAK+QLTWLR K +DC+
Sbjct: 248 RQAWEHLDGATDRQTFIEKGIAATRQLAKRQLTWLR----KTPLDCV 290
>sp|A9M4D3|MIAA_NEIM0 tRNA dimethylallyltransferase OS=Neisseria meningitidis serogroup C
(strain 053442) GN=miaA PE=3 SV=2
Length = 313
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/288 (43%), Positives = 164/288 (56%), Gaps = 51/288 (17%)
Query: 41 AILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDII 100
A+LGPTA GK+++ALKI+E +P EIIS+DSALVY MDIGT KPS ER PHHLIDII
Sbjct: 8 ALLGPTACGKTALALKIAETLPVEIISLDSALVYTGMDIGTAKPSASERAFVPHHLIDII 67
Query: 101 EPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKF 160
P ++YS +F ED I I + K PL+VGGTM+YF+AL G+N LP A+ LR
Sbjct: 68 TPVQTYSAARFVEDCTRLIGEITARGKCPLIVGGTMMYFRALTQGLNDLPEADACLRADL 127
Query: 161 NIDINKYGISFLYDKLKLLDPVTANQ---------------------------------- 186
+ YG+ FLY L+ +DP TA +
Sbjct: 128 DEQKQMYGLDFLYRTLQKVDPETACRLKPNDSQRIERALEVYYLTGKPMSEHLGRQSPHT 187
Query: 187 -----------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKW-NLNLNLPSMKCIG 234
P NR LH+ I+ RF ML+Q I EV+ +R+++ L + P+++C+G
Sbjct: 188 LPFDLHTAALIPENRARLHENIALRFHLMLEQG-FIGEVENLRRRYPGLTADSPAIRCVG 246
Query: 235 YRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCL 282
YRQ WEY+DG D EK I ATRQLAK+QLTWLR K +DC+
Sbjct: 247 YRQAWEYLDGKTDFPAFVEKGIAATRQLAKRQLTWLR----KTPLDCV 290
>sp|Q15NR1|MIAA_PSEA6 tRNA dimethylallyltransferase OS=Pseudoalteromonas atlantica
(strain T6c / ATCC BAA-1087) GN=miaA PE=3 SV=1
Length = 315
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 181/298 (60%), Gaps = 45/298 (15%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
+ ++GPTASGK+++A+++ + +PCEIIS+DSAL+Y MDIGT KP+ E PH LIDI
Sbjct: 14 ILLMGPTASGKTALAIELCQALPCEIISVDSALIYKGMDIGTAKPTAEELAQAPHRLIDI 73
Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
++P +SYSV +F DAL ++++I ++ ++PLLVGGTM+Y+KAL DG++ LP A+ +R +
Sbjct: 74 LDPVQSYSVAEFRRDALAAMQDITQRGRIPLLVGGTMMYYKALTDGLSTLPQADPLVRAE 133
Query: 160 FNIDINKYGISFLYDKLKLLDPVTANQ--------------------------------- 186
K G L+ +L+ +DPV+A +
Sbjct: 134 IEKQAEKNGWQALHQELQGIDPVSAQRIHPNDPQRLSRALEIYRISGKSMTELSLNKQPS 193
Query: 187 -----------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGY 235
PS+RHILH RI+ RF ML+ +EV +++ + +L+L+LPSM+C+GY
Sbjct: 194 APYQFSQFAIAPSDRHILHDRIAQRFDIMLNSGFE-DEVIELKSRADLHLDLPSMRCVGY 252
Query: 236 RQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNL 293
RQ W+Y+DG ++EK + ATRQLAK+QLTWLR+ +D K+ + ++ L
Sbjct: 253 RQMWQYLDGENIYQEMREKGLAATRQLAKRQLTWLRSWQNLHWLDTFSKDNLTNVMKL 310
>sp|B9MCW1|MIAA_ACIET tRNA dimethylallyltransferase OS=Acidovorax ebreus (strain TPSY)
GN=miaA PE=3 SV=1
Length = 323
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 174/309 (56%), Gaps = 53/309 (17%)
Query: 39 KVAILGPTASGKSSVALKISEY----IPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
+A+ GPTASGK++ A I++ +P EIIS+DSALVY MDIGT KP+ E+ PH
Sbjct: 8 ALALAGPTASGKTAAAFAIADALAPRLPVEIISVDSALVYSGMDIGTAKPTPAEQARVPH 67
Query: 95 HLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANL 154
HLIDI +P ++YS +F +DA I I + LPLLVGGTMLYFKAL DGI+ +PPA+
Sbjct: 68 HLIDIRDPLQAYSAAEFVQDATRLIGEIRARGALPLLVGGTMLYFKALFDGIDDMPPADA 127
Query: 155 KLRTKFNIDINKYGISFLYDKLKLLDPVTAN----------------------------- 185
+R + G S ++ +L +DP TA
Sbjct: 128 AVRARLEAQAAAIGWSGMHAELARVDPPTAARLAPGDSQRIQRALEVWHVSGRPLSSFHT 187
Query: 186 -------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLN 226
+P +R LH RI++RF ML L +EV ++R + +L+ +
Sbjct: 188 TKTVAASARPMSAASLFSLEPHDRAWLHGRIAERFHAMLAAGFL-DEVLRLRARGDLHAD 246
Query: 227 LPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNC 286
LPSM+C+GYRQ WE +DGL ++L E+ I ATRQLAK+Q+TWLR+M E+ +I C +
Sbjct: 247 LPSMRCVGYRQAWESLDGLYPMSSLPERGIAATRQLAKRQITWLRSMPERHSIACDAPDA 306
Query: 287 VQKILNLIK 295
+++ ++
Sbjct: 307 TAQLVQAVR 315
>sp|A1KA92|MIAA_AZOSB tRNA dimethylallyltransferase OS=Azoarcus sp. (strain BH72) GN=miaA
PE=3 SV=1
Length = 320
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 170/296 (57%), Gaps = 50/296 (16%)
Query: 44 GPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPT 103
GPTASGK++ AL ++ +P EIIS+DSALVY DMDIGT KPS E+ + PHHLID++ P
Sbjct: 16 GPTASGKTASALALAATLPVEIISVDSALVYRDMDIGTAKPSAAEQAVCPHHLIDVVSPE 75
Query: 104 KSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNID 163
++YS +FC +A +++I + ++PLL GGTMLYFKALRDG++ LPPA+ LR
Sbjct: 76 EAYSAARFCAEASVLMRDISARGRIPLLAGGTMLYFKALRDGLSDLPPADPVLRRAIEER 135
Query: 164 INKYGISFLYDKLKLLDPVTANQ------------------------------------- 186
G L+ +L LDP A +
Sbjct: 136 AAAAGWPALHAELARLDPDAAARLEPTDAQRIQRALEIVTLSGAPLAASYARREDAPLPC 195
Query: 187 --------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQT 238
PS+R +LH RI RF +ML L++EV +R+++ L + SM+C+GYRQ
Sbjct: 196 RLLPIALAPSDRAVLHARIEQRFDQMLAAG-LVDEVAALRERYVLQPQMASMRCVGYRQA 254
Query: 239 WEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEK----ITIDCLEKNCVQKI 290
WE++DG IDR TL+ K I ATRQLAK+QLTW R ++ + +DCL + Q +
Sbjct: 255 WEFLDGEIDRATLRFKGIAATRQLAKRQLTWQRQFRDQWPELVELDCLAPDLPQHV 310
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,713,804
Number of Sequences: 539616
Number of extensions: 4418432
Number of successful extensions: 18658
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 16585
Number of HSP's gapped (non-prelim): 1572
length of query: 298
length of database: 191,569,459
effective HSP length: 117
effective length of query: 181
effective length of database: 128,434,387
effective search space: 23246624047
effective search space used: 23246624047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)