Query psy8556
Match_columns 298
No_of_seqs 311 out of 3337
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 21:52:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14729 miaA tRNA delta(2)-is 100.0 7E-70 1.5E-74 502.0 27.5 245 36-283 3-289 (300)
2 COG0324 MiaA tRNA delta(2)-iso 100.0 1.8E-68 4E-73 490.9 26.7 248 36-285 2-293 (308)
3 TIGR00174 miaA tRNA isopenteny 100.0 4.9E-67 1.1E-71 480.7 25.7 243 39-283 1-286 (287)
4 PRK00091 miaA tRNA delta(2)-is 100.0 2.9E-65 6.2E-70 474.3 29.0 258 36-295 3-302 (307)
5 PLN02840 tRNA dimethylallyltra 100.0 1.7E-62 3.6E-67 468.7 28.6 257 35-296 19-357 (421)
6 PLN02748 tRNA dimethylallyltra 100.0 9.8E-61 2.1E-65 463.3 27.4 251 32-284 17-370 (468)
7 PF01715 IPPT: IPP transferase 100.0 2.9E-58 6.2E-63 417.6 20.4 209 71-281 1-252 (253)
8 PLN02165 adenylate isopentenyl 100.0 1.2E-54 2.6E-59 403.8 22.9 237 33-283 39-296 (334)
9 KOG1384|consensus 100.0 2.3E-44 4.9E-49 328.7 19.0 224 36-274 6-243 (348)
10 PF01745 IPT: Isopentenyl tran 99.9 4.5E-24 9.6E-29 186.1 12.1 205 38-274 2-226 (233)
11 COG0572 Udk Uridine kinase [Nu 99.3 1.7E-12 3.8E-17 114.5 5.8 148 35-185 6-174 (218)
12 COG3839 MalK ABC-type sugar tr 99.1 1.2E-10 2.6E-15 109.5 8.0 145 10-166 8-178 (338)
13 COG1136 SalX ABC-type antimicr 99.1 3E-10 6.5E-15 101.2 10.0 145 10-163 6-184 (226)
14 PRK00300 gmk guanylate kinase; 99.1 4.6E-11 9.9E-16 104.6 2.5 118 34-160 2-134 (205)
15 TIGR03263 guanyl_kin guanylate 99.1 9.5E-11 2.1E-15 100.4 4.1 116 37-161 1-131 (180)
16 COG3842 PotA ABC-type spermidi 99.0 6.1E-10 1.3E-14 105.3 8.4 145 10-166 10-181 (352)
17 PTZ00301 uridine kinase; Provi 99.0 3E-10 6.4E-15 100.7 5.6 147 36-185 2-173 (210)
18 COG2884 FtsE Predicted ATPase 99.0 2.8E-09 6.1E-14 92.1 10.9 147 9-165 5-181 (223)
19 COG1126 GlnQ ABC-type polar am 98.9 8E-09 1.7E-13 90.9 11.0 140 11-162 8-177 (240)
20 COG1131 CcmA ABC-type multidru 98.9 5.7E-09 1.2E-13 97.0 10.3 142 9-164 8-179 (293)
21 COG1120 FepC ABC-type cobalami 98.9 1E-09 2.2E-14 99.7 4.0 54 18-81 14-68 (258)
22 COG0410 LivF ABC-type branched 98.9 4.2E-09 9.2E-14 93.4 7.8 72 13-94 10-82 (237)
23 COG1116 TauB ABC-type nitrate/ 98.9 3.1E-09 6.8E-14 95.3 6.9 141 10-164 8-173 (248)
24 cd03292 ABC_FtsE_transporter F 98.9 1.1E-08 2.4E-13 90.0 9.8 62 11-82 6-68 (214)
25 cd03259 ABC_Carb_Solutes_like 98.9 5.8E-09 1.3E-13 91.9 7.8 60 11-81 6-66 (213)
26 COG0194 Gmk Guanylate kinase [ 98.9 2.2E-09 4.7E-14 92.4 4.7 116 36-161 3-133 (191)
27 cd03256 ABC_PhnC_transporter A 98.8 1.6E-08 3.4E-13 90.7 9.6 61 11-81 6-67 (241)
28 cd03215 ABC_Carb_Monos_II This 98.8 2.3E-08 5E-13 86.2 10.2 43 35-82 24-67 (182)
29 COG1124 DppF ABC-type dipeptid 98.8 2.2E-08 4.8E-13 89.5 10.2 181 11-213 9-223 (252)
30 PRK15453 phosphoribulokinase; 98.8 2.7E-09 6E-14 97.9 4.5 151 33-185 1-192 (290)
31 PRK11650 ugpC glycerol-3-phosp 98.8 4.8E-09 1E-13 100.0 6.3 146 10-165 8-178 (356)
32 TIGR02315 ABC_phnC phosphonate 98.8 1.7E-08 3.7E-13 90.7 9.4 61 11-81 7-68 (243)
33 PRK05480 uridine/cytidine kina 98.8 3.7E-09 7.9E-14 93.1 4.9 38 33-70 2-42 (209)
34 cd03229 ABC_Class3 This class 98.8 1.6E-08 3.5E-13 86.9 8.5 59 12-81 7-66 (178)
35 COG1121 ZnuC ABC-type Mn/Zn tr 98.8 2.7E-08 5.8E-13 90.1 10.1 131 20-163 18-181 (254)
36 TIGR00960 3a0501s02 Type II (G 98.8 1.8E-08 3.9E-13 89.0 8.7 60 11-80 7-68 (216)
37 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.8 2.2E-08 4.7E-13 88.5 9.1 61 11-81 6-70 (218)
38 PRK10851 sulfate/thiosulfate t 98.8 8.1E-09 1.8E-13 98.4 6.7 60 11-81 8-68 (353)
39 TIGR02673 FtsE cell division A 98.8 3.5E-08 7.6E-13 86.9 10.2 61 11-81 7-68 (214)
40 COG4559 ABC-type hemin transpo 98.8 9.5E-09 2.1E-13 90.3 6.0 60 16-85 11-71 (259)
41 cd03230 ABC_DR_subfamily_A Thi 98.8 3.8E-08 8.3E-13 84.1 9.5 58 12-80 7-65 (173)
42 TIGR03265 PhnT2 putative 2-ami 98.8 3.6E-08 7.8E-13 94.0 10.1 146 10-166 9-179 (353)
43 PRK14737 gmk guanylate kinase; 98.8 6.1E-09 1.3E-13 90.6 4.3 88 36-132 3-100 (186)
44 cd03262 ABC_HisP_GlnQ_permease 98.8 7.5E-08 1.6E-12 84.6 11.1 59 11-80 6-65 (213)
45 cd03258 ABC_MetN_methionine_tr 98.8 5E-08 1.1E-12 87.1 10.0 61 11-81 7-71 (233)
46 PRK11432 fbpC ferric transport 98.8 2.8E-08 6E-13 94.7 8.7 146 10-166 11-181 (351)
47 PLN02348 phosphoribulokinase 98.7 3.7E-09 8.1E-14 101.1 2.6 146 35-182 47-225 (395)
48 cd03225 ABC_cobalt_CbiO_domain 98.7 3E-08 6.5E-13 87.2 8.2 61 10-80 4-66 (211)
49 cd03261 ABC_Org_Solvent_Resist 98.7 8.6E-08 1.9E-12 85.8 11.2 60 11-81 6-66 (235)
50 cd03228 ABCC_MRP_Like The MRP 98.7 4.3E-08 9.4E-13 83.6 8.8 60 11-80 6-67 (171)
51 COG3840 ThiQ ABC-type thiamine 98.7 5.2E-08 1.1E-12 83.9 9.0 124 35-164 23-172 (231)
52 PRK13536 nodulation factor exp 98.7 4.1E-08 8.8E-13 93.1 9.3 61 10-81 46-107 (340)
53 cd03265 ABC_DrrA DrrA is the A 98.7 5.4E-08 1.2E-12 86.2 9.5 59 11-80 6-65 (220)
54 PLN02318 phosphoribulokinase/u 98.7 1E-08 2.2E-13 102.3 5.1 145 36-181 64-219 (656)
55 TIGR02211 LolD_lipo_ex lipopro 98.7 2.6E-08 5.7E-13 88.1 7.3 62 11-82 7-72 (221)
56 TIGR01188 drrA daunorubicin re 98.7 9.8E-08 2.1E-12 88.9 11.4 51 20-80 7-58 (302)
57 cd03246 ABCC_Protease_Secretio 98.7 6.6E-08 1.4E-12 82.7 9.2 60 11-80 6-67 (173)
58 cd00071 GMPK Guanosine monopho 98.7 3.7E-09 8E-14 87.4 1.4 87 39-133 1-97 (137)
59 PRK04220 2-phosphoglycerate ki 98.7 1.1E-08 2.5E-13 94.8 4.7 92 35-137 90-200 (301)
60 COG4619 ABC-type uncharacteriz 98.7 1.4E-08 3.1E-13 86.3 4.9 58 19-86 16-74 (223)
61 cd03218 ABC_YhbG The ABC trans 98.7 7.8E-08 1.7E-12 85.8 9.7 60 11-81 6-66 (232)
62 PRK11000 maltose/maltodextrin 98.7 4.3E-08 9.2E-13 94.0 8.5 61 10-81 8-69 (369)
63 cd03295 ABC_OpuCA_Osmoprotecti 98.7 9.3E-08 2E-12 86.0 10.2 60 11-80 6-66 (242)
64 PRK11629 lolD lipoprotein tran 98.7 3.2E-08 7E-13 88.5 6.9 62 10-81 10-75 (233)
65 cd03301 ABC_MalK_N The N-termi 98.7 9.9E-08 2.1E-12 84.0 9.7 58 12-80 7-65 (213)
66 TIGR00235 udk uridine kinase. 98.7 1.9E-08 4.1E-13 88.6 4.9 38 33-70 2-42 (207)
67 cd03293 ABC_NrtD_SsuB_transpor 98.7 4.8E-08 1E-12 86.5 7.6 60 11-80 6-69 (220)
68 COG3638 ABC-type phosphate/pho 98.7 1.1E-08 2.3E-13 91.2 3.2 63 9-82 7-71 (258)
69 TIGR02314 ABC_MetN D-methionin 98.7 5.2E-08 1.1E-12 92.5 8.1 64 10-83 6-73 (343)
70 PRK09452 potA putrescine/sperm 98.7 5.1E-08 1.1E-12 93.6 8.1 144 11-165 20-188 (375)
71 COG1125 OpuBA ABC-type proline 98.7 1.2E-07 2.6E-12 85.5 9.8 145 9-166 5-180 (309)
72 COG0396 sufC Cysteine desulfur 98.7 5.7E-08 1.2E-12 86.3 7.6 78 35-118 28-108 (251)
73 cd03219 ABC_Mj1267_LivG_branch 98.7 1.9E-07 4E-12 83.5 11.1 60 11-81 6-66 (236)
74 cd03266 ABC_NatA_sodium_export 98.7 1.9E-07 4.1E-12 82.4 10.9 60 11-80 7-70 (218)
75 TIGR03258 PhnT 2-aminoethylpho 98.7 7.5E-08 1.6E-12 92.1 8.8 145 10-165 10-181 (362)
76 PRK13537 nodulation ABC transp 98.7 7.9E-08 1.7E-12 89.8 8.7 62 9-81 11-73 (306)
77 cd02029 PRK_like Phosphoribulo 98.7 9.7E-09 2.1E-13 93.7 2.5 146 39-185 1-186 (277)
78 cd03216 ABC_Carb_Monos_I This 98.7 8.3E-08 1.8E-12 81.4 8.0 60 10-80 5-65 (163)
79 cd03268 ABC_BcrA_bacitracin_re 98.7 2.1E-07 4.7E-12 81.6 10.7 59 11-80 6-65 (208)
80 TIGR01288 nodI ATP-binding ABC 98.7 1.2E-07 2.6E-12 88.4 9.6 59 11-80 10-69 (303)
81 PRK11153 metN DL-methionine tr 98.6 1.2E-07 2.7E-12 89.9 9.7 62 10-81 6-71 (343)
82 PRK13644 cbiO cobalt transport 98.6 1.5E-07 3.2E-12 86.5 9.9 61 11-81 7-68 (274)
83 cd03213 ABCG_EPDR ABCG transpo 98.6 1.3E-07 2.9E-12 82.4 9.1 60 11-80 9-76 (194)
84 cd03269 ABC_putative_ATPase Th 98.6 1.9E-07 4.2E-12 82.0 10.2 58 11-79 6-64 (210)
85 COG1118 CysA ABC-type sulfate/ 98.6 8.6E-08 1.9E-12 88.4 8.1 55 11-77 8-64 (345)
86 cd03298 ABC_ThiQ_thiamine_tran 98.6 2.1E-07 4.6E-12 81.8 10.4 42 34-80 21-63 (211)
87 TIGR02868 CydC thiol reductant 98.6 3.2E-08 7E-13 98.8 5.7 42 35-81 359-401 (529)
88 TIGR03411 urea_trans_UrtD urea 98.6 3E-07 6.5E-12 82.5 11.4 60 11-81 8-68 (242)
89 PRK09493 glnQ glutamine ABC tr 98.6 2.6E-07 5.7E-12 82.9 11.0 58 12-80 8-66 (240)
90 TIGR01186 proV glycine betaine 98.6 2.6E-07 5.6E-12 88.4 11.4 51 21-81 8-59 (363)
91 COG0411 LivG ABC-type branched 98.6 1.6E-08 3.5E-13 90.4 2.8 73 35-113 28-101 (250)
92 cd03233 ABC_PDR_domain1 The pl 98.6 1.5E-07 3.3E-12 82.5 9.0 140 11-164 9-161 (202)
93 PRK11607 potG putrescine trans 98.6 1E-07 2.2E-12 91.7 8.4 144 10-164 24-192 (377)
94 cd03222 ABC_RNaseL_inhibitor T 98.6 5.7E-08 1.2E-12 83.9 6.0 38 35-77 23-61 (177)
95 PRK07429 phosphoribulokinase; 98.6 2.1E-08 4.5E-13 94.6 3.3 38 33-70 4-44 (327)
96 cd03297 ABC_ModC_molybdenum_tr 98.6 2.6E-07 5.5E-12 81.5 10.0 58 9-80 4-62 (214)
97 COG2274 SunT ABC-type bacterio 98.6 7E-08 1.5E-12 99.3 7.3 125 35-164 497-652 (709)
98 TIGR01166 cbiO cobalt transpor 98.6 3.6E-08 7.8E-13 85.4 4.2 56 15-80 1-57 (190)
99 cd02028 UMPK_like Uridine mono 98.6 2.3E-08 5E-13 86.4 2.9 129 39-170 1-147 (179)
100 TIGR03864 PQQ_ABC_ATP ABC tran 98.6 3.8E-07 8.2E-12 81.7 10.8 59 11-80 7-66 (236)
101 TIGR02142 modC_ABC molybdenum 98.6 3.4E-07 7.3E-12 87.3 11.0 41 35-80 21-62 (354)
102 TIGR03522 GldA_ABC_ATP gliding 98.6 4.1E-07 9E-12 84.7 11.3 60 11-81 8-68 (301)
103 cd03226 ABC_cobalt_CbiO_domain 98.6 3.1E-08 6.8E-13 86.8 3.5 59 11-79 5-64 (205)
104 PRK11144 modC molybdate transp 98.6 2.6E-07 5.6E-12 88.1 9.9 41 35-80 22-63 (352)
105 PF00485 PRK: Phosphoribulokin 98.6 1.3E-08 2.8E-13 88.7 0.9 24 39-62 1-24 (194)
106 PRK11300 livG leucine/isoleuci 98.6 4.4E-07 9.5E-12 82.1 10.9 60 11-81 11-71 (255)
107 cd03247 ABCC_cytochrome_bd The 98.6 9.2E-08 2E-12 82.1 6.1 59 11-79 6-66 (178)
108 cd03237 ABC_RNaseL_inhibitor_d 98.6 5.5E-08 1.2E-12 88.2 4.9 56 14-74 2-57 (246)
109 PRK10575 iron-hydroxamate tran 98.6 3.8E-07 8.2E-12 83.3 10.3 59 11-80 17-76 (265)
110 cd03264 ABC_drug_resistance_li 98.6 4.6E-07 1E-11 79.7 10.5 58 11-80 6-64 (211)
111 COG4987 CydC ABC-type transpor 98.6 1.7E-07 3.6E-12 92.0 8.0 64 11-84 342-407 (573)
112 cd03232 ABC_PDR_domain2 The pl 98.5 2.6E-07 5.7E-12 80.3 8.2 130 11-164 9-151 (192)
113 PRK13540 cytochrome c biogenes 98.5 8.3E-07 1.8E-11 77.6 11.4 59 11-80 7-66 (200)
114 PRK11124 artP arginine transpo 98.5 6.2E-07 1.3E-11 80.6 10.8 58 11-79 8-66 (242)
115 PRK11831 putative ABC transpor 98.5 7E-07 1.5E-11 81.7 11.2 60 11-81 13-73 (269)
116 cd03263 ABC_subfamily_A The AB 98.5 4.6E-08 9.9E-13 86.6 3.2 60 11-80 6-67 (220)
117 PRK14263 phosphate ABC transpo 98.5 5E-07 1.1E-11 82.5 10.1 59 17-80 19-78 (261)
118 cd03236 ABC_RNaseL_inhibitor_d 98.5 6.4E-08 1.4E-12 88.2 4.2 55 9-74 4-58 (255)
119 PRK10908 cell division protein 98.5 4.2E-08 9.1E-13 87.1 2.8 60 11-80 7-67 (222)
120 cd03294 ABC_Pro_Gly_Bertaine T 98.5 7E-07 1.5E-11 81.8 10.9 41 35-80 48-89 (269)
121 PRK11231 fecE iron-dicitrate t 98.5 5E-07 1.1E-11 81.9 9.8 59 11-80 8-67 (255)
122 cd02025 PanK Pantothenate kina 98.5 1.9E-08 4.1E-13 89.7 0.3 32 39-70 1-39 (220)
123 COG4988 CydD ABC-type transpor 98.5 2.3E-07 5E-12 91.8 7.9 74 12-95 327-403 (559)
124 PLN02772 guanylate kinase 98.5 1.6E-07 3.5E-12 89.9 6.6 142 11-160 108-265 (398)
125 TIGR00968 3a0106s01 sulfate AB 98.5 3.7E-07 8.1E-12 81.9 8.6 58 12-80 7-65 (237)
126 cd03235 ABC_Metallic_Cations A 98.5 5.5E-08 1.2E-12 85.7 3.2 59 10-79 4-63 (213)
127 TIGR03797 NHPM_micro_ABC2 NHPM 98.5 2.7E-07 5.9E-12 95.1 8.4 43 35-82 477-520 (686)
128 cd02026 PRK Phosphoribulokinas 98.5 1E-07 2.2E-12 87.8 4.5 32 39-70 1-35 (273)
129 cd03296 ABC_CysA_sulfate_impor 98.5 1.5E-07 3.2E-12 84.5 5.5 60 11-81 8-68 (239)
130 cd03267 ABC_NatA_like Similar 98.5 8.9E-07 1.9E-11 79.5 10.4 40 35-79 45-85 (236)
131 PRK10070 glycine betaine trans 98.5 4.3E-07 9.3E-12 88.0 8.9 42 35-81 52-94 (400)
132 cd03257 ABC_NikE_OppD_transpor 98.5 7.4E-08 1.6E-12 85.5 3.3 61 11-81 7-71 (228)
133 PF00625 Guanylate_kin: Guanyl 98.5 3.3E-08 7.2E-13 85.3 1.0 91 36-134 1-101 (183)
134 PRK11176 lipid transporter ATP 98.5 3.9E-07 8.5E-12 92.0 8.7 42 35-81 367-409 (582)
135 PRK15079 oligopeptide ABC tran 98.5 5.1E-07 1.1E-11 85.4 8.9 42 35-81 45-87 (331)
136 TIGR01193 bacteriocin_ABC ABC- 98.5 2.7E-07 5.9E-12 95.4 7.6 42 35-81 498-540 (708)
137 PRK10790 putative multidrug tr 98.5 3E-07 6.5E-12 93.1 7.7 41 35-80 365-406 (592)
138 PRK15056 manganese/iron transp 98.5 8.2E-08 1.8E-12 88.1 3.3 60 10-79 11-71 (272)
139 PRK09536 btuD corrinoid ABC tr 98.5 1.2E-06 2.6E-11 84.9 11.5 60 11-81 9-69 (402)
140 PRK13647 cbiO cobalt transport 98.5 7.5E-08 1.6E-12 88.5 2.9 61 10-80 9-70 (274)
141 PRK14242 phosphate transporter 98.5 1.5E-06 3.2E-11 78.6 11.4 64 11-80 12-76 (253)
142 TIGR03796 NHPM_micro_ABC1 NHPM 98.5 1.7E-07 3.8E-12 96.8 5.9 42 35-81 503-545 (710)
143 cd03217 ABC_FeS_Assembly ABC-t 98.5 7E-07 1.5E-11 78.2 8.7 63 11-82 6-69 (200)
144 TIGR03608 L_ocin_972_ABC putat 98.5 9.2E-08 2E-12 83.7 3.1 59 11-80 4-63 (206)
145 PRK10418 nikD nickel transport 98.5 1.1E-06 2.3E-11 79.8 10.2 62 11-80 10-72 (254)
146 PRK14247 phosphate ABC transpo 98.5 1.8E-06 3.8E-11 78.0 11.5 64 11-80 9-73 (250)
147 PRK13633 cobalt transporter AT 98.5 9.7E-07 2.1E-11 81.3 10.0 61 10-80 9-75 (280)
148 PRK09700 D-allose transporter 98.5 5.5E-07 1.2E-11 89.7 8.9 61 10-81 10-71 (510)
149 PRK11248 tauB taurine transpor 98.5 8.5E-08 1.8E-12 87.2 2.8 59 11-80 7-66 (255)
150 COG1132 MdlB ABC-type multidru 98.5 3.7E-07 8E-12 92.0 7.6 61 13-83 336-397 (567)
151 PRK14268 phosphate ABC transpo 98.5 1.6E-06 3.4E-11 78.9 11.0 64 11-80 18-82 (258)
152 cd03299 ABC_ModC_like Archeal 98.5 7.7E-07 1.7E-11 79.8 8.9 59 11-81 6-65 (235)
153 PRK15439 autoinducer 2 ABC tra 98.4 8.7E-07 1.9E-11 88.4 10.0 60 11-81 17-77 (510)
154 COG1127 Ttg2A ABC-type transpo 98.4 2E-07 4.3E-12 83.3 4.9 59 12-81 15-74 (263)
155 PRK10619 histidine/lysine/argi 98.4 1.7E-06 3.6E-11 78.6 11.0 59 11-80 11-70 (257)
156 cd03224 ABC_TM1139_LivF_branch 98.4 4.3E-07 9.3E-12 80.3 6.9 60 11-81 6-66 (222)
157 PRK13548 hmuV hemin importer A 98.4 2.3E-07 4.9E-12 84.5 5.1 59 11-80 8-67 (258)
158 PRK13652 cbiO cobalt transport 98.4 1.1E-07 2.5E-12 87.4 3.0 61 10-80 8-69 (277)
159 PRK10895 lipopolysaccharide AB 98.4 1.4E-07 3.1E-12 84.6 3.6 61 10-81 8-69 (241)
160 TIGR02857 CydD thiol reductant 98.4 3.9E-07 8.6E-12 91.0 7.0 42 35-81 346-388 (529)
161 PRK09580 sufC cysteine desulfu 98.4 1.7E-06 3.7E-11 77.9 10.4 61 11-80 7-68 (248)
162 TIGR00554 panK_bact pantothena 98.4 7.3E-08 1.6E-12 89.4 1.5 37 34-70 59-102 (290)
163 cd03223 ABCD_peroxisomal_ALDP 98.4 1.3E-07 2.8E-12 80.5 2.9 55 10-74 5-59 (166)
164 cd03253 ABCC_ATM1_transporter 98.4 1.7E-07 3.6E-12 83.8 3.8 60 11-80 6-66 (236)
165 PRK14259 phosphate ABC transpo 98.4 2.1E-06 4.6E-11 78.6 11.1 63 12-80 20-83 (269)
166 cd02024 NRK1 Nicotinamide ribo 98.4 6E-07 1.3E-11 78.2 7.0 35 39-75 1-36 (187)
167 COG1117 PstB ABC-type phosphat 98.4 6.5E-07 1.4E-11 78.9 7.2 74 12-91 13-88 (253)
168 PRK10584 putative ABC transpor 98.4 2.3E-07 4.9E-12 82.6 4.4 62 11-82 12-77 (228)
169 PRK13639 cbiO cobalt transport 98.4 1.3E-07 2.7E-12 87.0 2.8 61 10-80 6-67 (275)
170 cd03254 ABCC_Glucan_exporter_l 98.4 2E-07 4.2E-12 83.0 4.0 60 11-80 8-68 (229)
171 cd02023 UMPK Uridine monophosp 98.4 1.9E-07 4.2E-12 81.3 3.8 32 39-70 1-35 (198)
172 PRK14738 gmk guanylate kinase; 98.4 4.4E-07 9.6E-12 80.0 6.1 118 35-162 11-144 (206)
173 PRK14254 phosphate ABC transpo 98.4 1.5E-06 3.2E-11 80.5 9.7 64 11-80 45-109 (285)
174 COG0488 Uup ATPase components 98.4 9E-07 1.9E-11 88.4 8.8 56 10-76 326-382 (530)
175 PRK09700 D-allose transporter 98.4 7.3E-07 1.6E-11 88.8 8.2 41 35-80 287-328 (510)
176 PRK13649 cbiO cobalt transport 98.4 1.5E-07 3.3E-12 86.6 3.1 62 10-81 7-73 (280)
177 PRK13549 xylose transporter AT 98.4 8.8E-07 1.9E-11 88.2 8.7 62 10-80 10-72 (506)
178 COG3845 ABC-type uncharacteriz 98.4 1.2E-06 2.6E-11 85.2 9.3 113 35-152 28-169 (501)
179 PRK13657 cyclic beta-1,2-gluca 98.4 4.7E-07 1E-11 91.7 6.8 42 35-81 359-401 (588)
180 PRK10982 galactose/methyl gala 98.4 8.5E-07 1.8E-11 87.9 8.5 59 11-80 4-63 (491)
181 PRK11288 araG L-arabinose tran 98.4 1.1E-06 2.3E-11 87.5 9.2 59 11-80 10-69 (501)
182 PRK13636 cbiO cobalt transport 98.4 2E-07 4.4E-12 86.0 3.8 61 10-80 10-71 (283)
183 PRK09473 oppD oligopeptide tra 98.4 1.6E-06 3.4E-11 82.0 9.9 45 35-81 40-85 (330)
184 TIGR01277 thiQ thiamine ABC tr 98.4 3.9E-07 8.5E-12 80.4 5.3 43 33-80 20-63 (213)
185 PRK13632 cbiO cobalt transport 98.4 2.6E-07 5.6E-12 84.7 4.3 60 11-80 13-74 (271)
186 PRK15093 antimicrobial peptide 98.4 1.7E-06 3.6E-11 81.8 9.8 65 11-81 9-77 (330)
187 PRK10762 D-ribose transporter 98.4 2.1E-06 4.5E-11 85.4 10.9 42 35-81 276-318 (501)
188 PRK11614 livF leucine/isoleuci 98.4 2E-07 4.4E-12 83.5 3.4 60 11-81 11-71 (237)
189 PRK08233 hypothetical protein; 98.4 2.5E-06 5.4E-11 72.7 9.9 35 36-70 2-37 (182)
190 COG4555 NatA ABC-type Na+ tran 98.4 5.1E-07 1.1E-11 78.9 5.7 60 11-80 7-67 (245)
191 COG4152 ABC-type uncharacteriz 98.4 8.3E-07 1.8E-11 79.7 7.1 63 8-81 5-68 (300)
192 PRK10253 iron-enterobactin tra 98.4 3E-07 6.6E-12 83.9 4.4 59 11-80 13-72 (265)
193 PRK10771 thiQ thiamine transpo 98.4 4.5E-07 9.8E-12 81.0 5.5 41 35-80 23-64 (232)
194 COG4175 ProV ABC-type proline/ 98.4 2.6E-06 5.6E-11 79.1 10.4 125 35-166 52-209 (386)
195 PRK14245 phosphate ABC transpo 98.4 3.2E-06 7E-11 76.4 11.1 63 11-81 9-74 (250)
196 TIGR03410 urea_trans_UrtE urea 98.4 8.9E-07 1.9E-11 78.9 7.3 60 11-81 6-66 (230)
197 cd03260 ABC_PstB_phosphate_tra 98.4 4.5E-07 9.7E-12 80.6 5.3 64 11-80 6-70 (227)
198 PRK11160 cysteine/glutathione 98.4 4.1E-07 8.9E-12 92.0 5.7 42 35-81 364-406 (574)
199 TIGR01184 ntrCD nitrate transp 98.4 3.6E-07 7.8E-12 81.7 4.7 42 35-81 9-51 (230)
200 PRK13637 cbiO cobalt transport 98.4 3.8E-07 8.2E-12 84.4 5.0 62 10-81 7-73 (287)
201 PRK13635 cbiO cobalt transport 98.4 3E-07 6.4E-12 84.8 4.2 63 9-81 9-73 (279)
202 TIGR02769 nickel_nikE nickel i 98.4 1.9E-07 4.1E-12 85.3 2.9 53 19-81 24-77 (265)
203 PRK11701 phnK phosphonate C-P 98.4 2.5E-07 5.4E-12 84.1 3.5 58 10-78 11-69 (258)
204 PRK13638 cbiO cobalt transport 98.4 2.9E-07 6.2E-12 84.4 3.9 59 11-80 7-66 (271)
205 PRK13541 cytochrome c biogenes 98.4 3.8E-07 8.3E-12 79.4 4.5 41 35-80 24-65 (195)
206 PRK11174 cysteine/glutathione 98.4 8.9E-07 1.9E-11 89.6 7.8 41 35-81 374-415 (588)
207 cd03290 ABCC_SUR1_N The SUR do 98.4 2.6E-07 5.7E-12 81.7 3.5 59 12-80 7-66 (218)
208 PRK13646 cbiO cobalt transport 98.4 2.8E-07 6E-12 85.3 3.8 60 11-80 8-72 (286)
209 PRK10078 ribose 1,5-bisphospho 98.4 2.2E-06 4.7E-11 74.2 9.2 30 37-66 2-31 (186)
210 cd03244 ABCC_MRP_domain2 Domai 98.4 3.2E-07 7E-12 81.1 4.0 60 11-80 8-69 (221)
211 PLN03232 ABC transporter C fam 98.4 8.3E-07 1.8E-11 98.7 8.0 126 35-165 1260-1415(1495)
212 PRK13648 cbiO cobalt transport 98.4 2.4E-07 5.1E-12 84.8 3.2 61 10-80 12-74 (269)
213 TIGR03375 type_I_sec_LssB type 98.4 1.3E-06 2.9E-11 90.1 9.0 42 35-81 489-531 (694)
214 TIGR01978 sufC FeS assembly AT 98.4 2.3E-07 5E-12 83.2 3.0 62 10-80 5-67 (243)
215 PRK15112 antimicrobial peptide 98.4 2.6E-07 5.5E-12 84.6 3.3 51 20-80 27-78 (267)
216 PRK10247 putative ABC transpor 98.4 4.2E-07 9.2E-12 80.9 4.6 60 11-81 13-73 (225)
217 PRK13645 cbiO cobalt transport 98.3 3.1E-07 6.7E-12 85.0 3.8 60 11-80 12-76 (289)
218 PRK13538 cytochrome c biogenes 98.3 4.2E-07 9E-12 79.7 4.4 59 11-80 7-66 (204)
219 cd03245 ABCC_bacteriocin_expor 98.3 3.7E-07 8.1E-12 80.7 4.1 60 11-80 8-69 (220)
220 COG1135 AbcC ABC-type metal io 98.3 3E-07 6.5E-12 84.9 3.5 64 9-82 5-73 (339)
221 PRK13641 cbiO cobalt transport 98.3 2.7E-07 5.8E-12 85.4 3.2 61 10-80 7-72 (287)
222 cd03214 ABC_Iron-Siderophores_ 98.3 4.6E-07 9.9E-12 78.0 4.4 59 11-80 5-64 (180)
223 cd03250 ABCC_MRP_domain1 Domai 98.3 3E-07 6.5E-12 80.5 3.3 57 10-76 5-66 (204)
224 PF13207 AAA_17: AAA domain; P 98.3 2.8E-07 6E-12 73.5 2.8 32 39-70 1-32 (121)
225 PF00005 ABC_tran: ABC transpo 98.3 2.1E-07 4.6E-12 75.8 2.2 42 35-81 9-51 (137)
226 TIGR00972 3a0107s01c2 phosphat 98.3 8.8E-07 1.9E-11 79.9 6.4 59 11-80 7-71 (247)
227 TIGR01842 type_I_sec_PrtD type 98.3 8.2E-07 1.8E-11 89.1 6.8 42 35-81 342-384 (544)
228 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.3 3.6E-07 7.8E-12 81.4 3.8 40 35-79 46-86 (224)
229 PRK10419 nikE nickel transport 98.3 3E-07 6.4E-12 84.2 3.2 62 10-81 8-78 (268)
230 PRK13634 cbiO cobalt transport 98.3 3.6E-07 7.9E-12 84.7 3.8 60 11-80 8-72 (290)
231 PRK14250 phosphate ABC transpo 98.3 4.4E-07 9.5E-12 81.7 4.2 59 11-80 9-68 (241)
232 TIGR00958 3a01208 Conjugate Tr 98.3 1.3E-06 2.9E-11 90.4 8.3 42 35-81 505-547 (711)
233 PRK14258 phosphate ABC transpo 98.3 5.1E-06 1.1E-10 75.7 11.1 61 11-79 13-76 (261)
234 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.3 4.6E-07 9.9E-12 81.2 4.1 60 11-80 6-68 (238)
235 TIGR01189 ccmA heme ABC export 98.3 5.3E-07 1.1E-11 78.6 4.3 58 12-80 7-65 (198)
236 KOG3354|consensus 98.3 2.4E-06 5.2E-11 71.7 7.9 137 35-220 10-157 (191)
237 PRK11288 araG L-arabinose tran 98.3 3.5E-06 7.6E-11 83.8 10.7 41 35-80 277-318 (501)
238 smart00072 GuKc Guanylate kina 98.3 7.4E-07 1.6E-11 77.0 5.1 90 37-134 2-101 (184)
239 PRK14260 phosphate ABC transpo 98.3 6.7E-06 1.5E-10 74.8 11.6 64 11-80 13-77 (259)
240 PRK13539 cytochrome c biogenes 98.3 5.5E-07 1.2E-11 79.2 4.3 58 11-79 8-66 (207)
241 TIGR03415 ABC_choXWV_ATP choli 98.3 4.5E-06 9.7E-11 80.4 10.9 38 35-77 48-86 (382)
242 COG4133 CcmA ABC-type transpor 98.3 1.1E-06 2.5E-11 75.9 6.0 55 17-81 13-68 (209)
243 PRK13643 cbiO cobalt transport 98.3 4.7E-07 1E-11 83.8 3.9 60 11-80 7-71 (288)
244 PRK14241 phosphate transporter 98.3 1.5E-06 3.3E-11 78.9 7.2 64 11-80 10-74 (258)
245 cd03252 ABCC_Hemolysin The ABC 98.3 5.7E-07 1.2E-11 80.5 4.2 60 11-80 6-67 (237)
246 PRK14265 phosphate ABC transpo 98.3 6.1E-06 1.3E-10 75.8 11.1 46 35-80 44-90 (274)
247 TIGR01194 cyc_pep_trnsptr cycl 98.3 1.3E-06 2.7E-11 88.1 7.0 42 35-81 366-408 (555)
248 COG4604 CeuD ABC-type enteroch 98.3 7.4E-07 1.6E-11 77.8 4.5 62 9-81 5-67 (252)
249 cd03300 ABC_PotA_N PotA is an 98.3 9.8E-07 2.1E-11 78.9 5.5 59 12-81 7-66 (232)
250 PRK10762 D-ribose transporter 98.3 5.3E-07 1.2E-11 89.6 4.2 60 10-80 9-69 (501)
251 PRK13543 cytochrome c biogenes 98.3 6.6E-07 1.4E-11 79.1 4.3 60 10-80 16-76 (214)
252 PRK14267 phosphate ABC transpo 98.3 1.5E-06 3.2E-11 78.6 6.7 64 11-80 10-74 (253)
253 PRK11264 putative amino-acid A 98.3 6.5E-07 1.4E-11 80.8 4.2 59 11-80 9-68 (250)
254 TIGR03771 anch_rpt_ABC anchore 98.3 7.4E-07 1.6E-11 79.3 4.5 40 35-79 4-44 (223)
255 PRK14270 phosphate ABC transpo 98.3 1.6E-06 3.4E-11 78.4 6.7 65 11-81 10-75 (251)
256 TIGR02770 nickel_nikD nickel i 98.3 6.6E-07 1.4E-11 79.9 4.2 45 35-80 10-55 (230)
257 PRK14269 phosphate ABC transpo 98.3 4.7E-07 1E-11 81.7 3.3 64 10-81 7-71 (246)
258 TIGR02204 MsbA_rel ABC transpo 98.3 1.5E-06 3.3E-11 87.6 7.1 41 35-80 364-405 (576)
259 COG4181 Predicted ABC-type tra 98.3 9E-07 2E-11 75.7 4.6 64 10-80 11-75 (228)
260 PRK14256 phosphate ABC transpo 98.3 1.7E-06 3.7E-11 78.2 6.7 64 11-80 10-74 (252)
261 TIGR03005 ectoine_ehuA ectoine 98.3 6.9E-07 1.5E-11 80.8 4.2 59 11-80 6-65 (252)
262 TIGR00957 MRP_assoc_pro multi 98.3 2.1E-06 4.5E-11 95.7 8.7 43 35-82 1310-1353(1522)
263 TIGR03873 F420-0_ABC_ATP propo 98.3 1.5E-06 3.3E-11 78.8 6.4 59 11-80 7-66 (256)
264 PRK14273 phosphate ABC transpo 98.3 1E-06 2.2E-11 79.8 5.2 64 11-80 13-77 (254)
265 PRK13651 cobalt transporter AT 98.3 6.1E-07 1.3E-11 83.9 3.8 58 11-78 8-70 (305)
266 cd03248 ABCC_TAP TAP, the Tran 98.3 8.3E-07 1.8E-11 78.9 4.5 60 11-80 17-79 (226)
267 cd03251 ABCC_MsbA MsbA is an e 98.3 7.4E-07 1.6E-11 79.5 4.2 59 12-80 7-67 (234)
268 PRK10261 glutathione transport 98.3 6E-06 1.3E-10 84.4 11.3 42 35-81 348-390 (623)
269 TIGR02982 heterocyst_DevA ABC 98.3 6E-07 1.3E-11 79.6 3.5 60 11-80 7-70 (220)
270 TIGR03269 met_CoM_red_A2 methy 98.3 4.3E-06 9.3E-11 83.5 9.9 45 20-74 298-342 (520)
271 COG4608 AppF ABC-type oligopep 98.3 7.8E-07 1.7E-11 80.9 4.1 46 31-81 33-79 (268)
272 PTZ00243 ABC transporter; Prov 98.3 2E-06 4.3E-11 95.9 8.2 43 35-82 1334-1377(1560)
273 PRK13549 xylose transporter AT 98.3 1.1E-06 2.4E-11 87.5 5.6 61 11-80 265-328 (506)
274 PRK05057 aroK shikimate kinase 98.3 1.5E-06 3.3E-11 74.5 5.7 34 37-70 4-37 (172)
275 PLN03130 ABC transporter C fam 98.3 2E-06 4.4E-11 96.1 8.1 42 35-81 1263-1305(1622)
276 PRK15177 Vi polysaccharide exp 98.3 7.5E-07 1.6E-11 78.9 3.9 35 35-74 11-45 (213)
277 PRK11022 dppD dipeptide transp 98.2 5.6E-07 1.2E-11 84.9 3.1 66 10-81 8-77 (326)
278 PRK14262 phosphate ABC transpo 98.2 1.7E-06 3.7E-11 78.1 5.9 64 11-80 9-73 (250)
279 cd03231 ABC_CcmA_heme_exporter 98.2 9.9E-07 2.2E-11 77.2 4.2 59 11-80 6-65 (201)
280 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.2 9.7E-07 2.1E-11 73.4 4.0 52 12-74 7-58 (144)
281 PRK10522 multidrug transporter 98.2 5.7E-07 1.2E-11 90.3 2.9 42 35-81 347-389 (547)
282 PRK13650 cbiO cobalt transport 98.2 1E-06 2.3E-11 81.1 4.4 61 10-80 9-72 (279)
283 TIGR01257 rim_protein retinal- 98.2 3.5E-06 7.6E-11 95.2 9.3 141 11-165 1943-2114(2272)
284 TIGR01187 potA spermidine/putr 98.2 2.1E-06 4.5E-11 81.0 6.5 34 42-80 1-35 (325)
285 TIGR03740 galliderm_ABC gallid 98.2 1.1E-06 2.3E-11 78.1 4.3 58 11-79 6-64 (223)
286 COG0444 DppD ABC-type dipeptid 98.2 1.9E-06 4.1E-11 80.1 6.1 50 34-83 28-78 (316)
287 PRK15134 microcin C ABC transp 98.2 3.4E-06 7.4E-11 84.4 8.4 41 35-81 310-351 (529)
288 PRK11247 ssuB aliphatic sulfon 98.2 9.3E-07 2E-11 80.6 4.0 53 11-74 18-70 (257)
289 PRK13547 hmuV hemin importer A 98.2 2.1E-06 4.6E-11 78.9 6.3 58 12-80 8-74 (272)
290 cd03369 ABCC_NFT1 Domain 2 of 98.2 1.1E-06 2.4E-11 77.0 4.2 60 11-80 12-73 (207)
291 PRK14235 phosphate transporter 98.2 2.7E-06 5.8E-11 77.8 6.9 64 11-80 25-89 (267)
292 PRK10744 pstB phosphate transp 98.2 2.4E-06 5.1E-11 77.8 6.4 64 11-80 19-83 (260)
293 PRK14264 phosphate ABC transpo 98.2 1.1E-05 2.5E-10 75.3 11.1 46 35-80 69-115 (305)
294 PRK10938 putative molybdenum t 98.2 7.6E-07 1.6E-11 88.2 3.3 60 10-80 8-68 (490)
295 TIGR02203 MsbA_lipidA lipid A 98.2 3.1E-06 6.7E-11 85.2 7.6 41 35-80 356-397 (571)
296 TIGR02323 CP_lyasePhnK phospho 98.2 1.3E-06 2.7E-11 79.1 4.3 57 11-78 9-66 (253)
297 PRK13631 cbiO cobalt transport 98.2 1.3E-06 2.7E-11 82.3 4.4 61 11-81 27-92 (320)
298 PLN03211 ABC transporter G-25; 98.2 3.6E-06 7.7E-11 86.5 8.1 59 12-79 75-134 (659)
299 PRK14274 phosphate ABC transpo 98.2 3E-06 6.6E-11 77.0 6.8 64 11-80 18-82 (259)
300 TIGR02324 CP_lyasePhnL phospho 98.2 1.3E-06 2.8E-11 77.6 4.2 45 20-74 22-66 (224)
301 PRK13409 putative ATPase RIL; 98.2 7.3E-07 1.6E-11 90.5 3.0 53 10-73 78-130 (590)
302 PRK14240 phosphate transporter 98.2 2.8E-06 6.1E-11 76.7 6.5 65 10-80 8-73 (250)
303 KOG0057|consensus 98.2 5.5E-06 1.2E-10 81.6 8.7 73 11-94 357-432 (591)
304 PRK14248 phosphate ABC transpo 98.2 3E-06 6.5E-11 77.4 6.6 65 11-81 27-92 (268)
305 PRK11819 putative ABC transpor 98.2 8.4E-07 1.8E-11 89.4 3.1 55 10-74 11-65 (556)
306 PRK05439 pantothenate kinase; 98.2 3.7E-07 8E-12 85.4 0.5 38 33-70 82-126 (311)
307 KOG0055|consensus 98.2 3.2E-06 6.9E-11 90.2 7.4 43 35-82 377-420 (1228)
308 PRK14272 phosphate ABC transpo 98.2 4.3E-06 9.4E-11 75.5 7.3 64 11-80 10-74 (252)
309 PRK14731 coaE dephospho-CoA ki 98.2 4.2E-06 9.1E-11 73.9 7.1 34 35-69 3-36 (208)
310 PRK14253 phosphate ABC transpo 98.2 1.4E-06 3.1E-11 78.6 4.0 65 10-80 8-73 (249)
311 TIGR01257 rim_protein retinal- 98.2 5.3E-06 1.2E-10 93.8 9.3 122 35-166 954-1106(2272)
312 TIGR01846 type_I_sec_HlyB type 98.2 4.2E-06 9.2E-11 86.4 8.0 42 35-81 481-523 (694)
313 PRK14255 phosphate ABC transpo 98.2 2.5E-06 5.5E-11 77.1 5.6 65 10-80 10-75 (252)
314 PRK14244 phosphate ABC transpo 98.2 7.2E-07 1.6E-11 80.6 2.1 66 9-80 9-75 (251)
315 PRK14236 phosphate transporter 98.2 3.7E-06 8.1E-11 77.1 6.7 64 11-80 31-95 (272)
316 PRK11308 dppF dipeptide transp 98.2 1.7E-06 3.7E-11 81.7 4.5 42 35-81 39-81 (327)
317 TIGR03719 ABC_ABC_ChvD ATP-bin 98.2 1E-06 2.3E-11 88.6 3.2 55 10-74 9-63 (552)
318 PRK14271 phosphate ABC transpo 98.2 1.2E-06 2.6E-11 80.7 3.2 66 9-80 25-91 (276)
319 PRK14237 phosphate transporter 98.2 3.9E-06 8.4E-11 76.8 6.6 63 12-80 27-90 (267)
320 PRK00131 aroK shikimate kinase 98.2 3.5E-06 7.6E-11 71.0 5.8 35 36-70 3-37 (175)
321 PRK13642 cbiO cobalt transport 98.2 2E-06 4.3E-11 79.2 4.6 60 11-80 10-72 (277)
322 COG4618 ArpD ABC-type protease 98.2 1.1E-05 2.3E-10 79.1 9.7 121 20-152 350-501 (580)
323 PRK09544 znuC high-affinity zi 98.2 1.8E-06 3.8E-11 78.5 4.1 53 11-74 10-62 (251)
324 PRK03695 vitamin B12-transport 98.2 3.8E-06 8.1E-11 76.0 6.3 40 35-80 20-60 (248)
325 PRK10636 putative ABC transpor 98.2 9.8E-07 2.1E-11 90.4 2.7 54 10-74 6-59 (638)
326 KOG0058|consensus 98.1 1.9E-06 4.1E-11 87.3 4.6 61 13-83 473-536 (716)
327 PRK06547 hypothetical protein; 98.1 2.5E-06 5.4E-11 73.3 4.7 40 35-76 13-52 (172)
328 CHL00131 ycf16 sulfate ABC tra 98.1 1.9E-06 4.2E-11 77.7 4.2 60 12-80 14-74 (252)
329 PRK15134 microcin C ABC transp 98.1 1.2E-06 2.5E-11 87.8 3.0 67 10-81 10-80 (529)
330 PRK14239 phosphate transporter 98.1 4.1E-06 8.8E-11 75.6 6.3 64 11-80 11-75 (252)
331 cd00267 ABC_ATPase ABC (ATP-bi 98.1 2.2E-06 4.9E-11 71.8 4.3 41 35-80 23-64 (157)
332 TIGR02633 xylG D-xylose ABC tr 98.1 1.7E-06 3.7E-11 85.9 4.1 61 11-80 7-68 (500)
333 PRK14261 phosphate ABC transpo 98.1 4.2E-06 9.1E-11 75.7 6.2 65 11-81 12-77 (253)
334 COG1122 CbiO ABC-type cobalt t 98.1 2.6E-06 5.7E-11 76.8 4.8 57 14-80 12-69 (235)
335 TIGR02633 xylG D-xylose ABC tr 98.1 2.7E-06 5.9E-11 84.5 5.4 41 35-80 284-326 (500)
336 cd03288 ABCC_SUR2 The SUR doma 98.1 2.2E-06 4.7E-11 77.9 4.3 59 12-80 26-86 (257)
337 PRK13546 teichoic acids export 98.1 2.1E-06 4.6E-11 78.6 4.2 47 17-73 35-81 (264)
338 COG1137 YhbG ABC-type (unclass 98.1 1E-06 2.2E-11 77.0 1.9 90 12-113 11-101 (243)
339 PRK13640 cbiO cobalt transport 98.1 2.5E-06 5.5E-11 78.7 4.6 62 10-81 10-76 (282)
340 PTZ00265 multidrug resistance 98.1 4E-06 8.6E-11 93.0 6.8 29 35-63 1192-1220(1466)
341 PRK14238 phosphate transporter 98.1 5.1E-06 1.1E-10 76.2 6.5 63 12-80 31-94 (271)
342 COG1134 TagH ABC-type polysacc 98.1 2.1E-06 4.6E-11 77.0 3.8 38 33-75 49-86 (249)
343 PRK14251 phosphate ABC transpo 98.1 6.7E-06 1.4E-10 74.3 7.1 64 11-80 10-74 (251)
344 PRK14249 phosphate ABC transpo 98.1 5.8E-06 1.3E-10 74.7 6.5 59 11-80 10-74 (251)
345 PRK11147 ABC transporter ATPas 98.1 1.5E-06 3.2E-11 89.0 2.8 54 10-74 8-61 (635)
346 COG4615 PvdE ABC-type sideroph 98.1 3.6E-06 7.8E-11 80.2 5.1 42 34-80 346-388 (546)
347 PRK14266 phosphate ABC transpo 98.1 6.2E-06 1.4E-10 74.4 6.5 64 11-80 9-73 (250)
348 PRK09984 phosphonate/organopho 98.1 2.9E-06 6.2E-11 77.3 4.2 59 11-80 10-72 (262)
349 COG1123 ATPase components of v 98.1 1.7E-05 3.8E-10 78.7 9.8 135 21-165 24-198 (539)
350 PLN03073 ABC transporter F fam 98.1 1.7E-06 3.6E-11 89.7 2.9 36 35-75 533-568 (718)
351 PRK15064 ABC transporter ATP-b 98.1 1.7E-06 3.7E-11 86.6 2.8 53 11-74 7-59 (530)
352 PRK14243 phosphate transporter 98.1 6.8E-06 1.5E-10 75.1 6.4 64 11-80 16-80 (264)
353 TIGR01192 chvA glucan exporter 98.1 1.9E-06 4.1E-11 87.4 3.0 41 35-80 359-400 (585)
354 PRK07261 topology modulation p 98.1 4E-06 8.6E-11 71.8 4.5 32 39-70 2-33 (171)
355 PRK14257 phosphate ABC transpo 98.1 2.6E-06 5.6E-11 80.5 3.6 47 35-81 106-153 (329)
356 cd03289 ABCC_CFTR2 The CFTR su 98.1 3.1E-06 6.6E-11 78.1 3.8 59 11-80 8-68 (275)
357 COG3265 GntK Gluconate kinase 98.1 3.2E-06 6.9E-11 70.4 3.3 129 43-221 1-131 (161)
358 cd03291 ABCC_CFTR1 The CFTR su 98.1 3.8E-06 8.2E-11 77.7 4.2 35 35-74 61-95 (282)
359 COG4167 SapF ABC-type antimicr 98.0 4.7E-06 1E-10 72.1 4.2 44 30-78 32-76 (267)
360 COG1129 MglA ABC-type sugar tr 98.0 5E-06 1.1E-10 81.9 5.0 72 10-92 13-85 (500)
361 PRK10938 putative molybdenum t 98.0 3.5E-06 7.5E-11 83.5 3.9 40 35-79 284-325 (490)
362 PRK10261 glutathione transport 98.0 2.5E-06 5.5E-11 87.1 2.9 59 9-77 16-78 (623)
363 PRK11147 ABC transporter ATPas 98.0 2.7E-06 5.8E-11 87.1 3.0 37 35-76 343-379 (635)
364 COG1101 PhnK ABC-type uncharac 98.0 8.5E-06 1.8E-10 72.1 5.6 59 12-80 12-71 (263)
365 PRK08118 topology modulation p 98.0 4.2E-06 9.2E-11 71.4 3.7 32 39-70 3-34 (167)
366 PRK10636 putative ABC transpor 98.0 2.7E-06 5.8E-11 87.2 2.9 36 35-75 336-371 (638)
367 TIGR03269 met_CoM_red_A2 methy 98.0 3.4E-06 7.4E-11 84.2 3.6 55 11-74 6-60 (520)
368 PRK14275 phosphate ABC transpo 98.0 9.8E-06 2.1E-10 75.0 6.3 64 11-80 45-109 (286)
369 PRK14246 phosphate ABC transpo 98.0 3.4E-06 7.4E-11 76.8 3.1 47 10-62 15-61 (257)
370 PRK10535 macrolide transporter 98.0 4.1E-05 8.8E-10 78.7 11.2 62 11-82 10-75 (648)
371 cd03234 ABCG_White The White s 98.0 4.8E-06 1E-10 74.1 3.8 61 12-79 10-74 (226)
372 PRK10982 galactose/methyl gala 98.0 5.1E-06 1.1E-10 82.4 4.3 42 35-81 272-314 (491)
373 COG1123 ATPase components of v 98.0 6.4E-06 1.4E-10 81.8 4.9 41 33-78 313-354 (539)
374 COG4107 PhnK ABC-type phosphon 98.0 5.9E-06 1.3E-10 71.0 4.0 56 10-76 11-67 (258)
375 PRK15064 ABC transporter ATP-b 98.0 3.2E-06 7E-11 84.6 2.9 35 35-74 343-377 (530)
376 PRK14252 phosphate ABC transpo 98.0 6.2E-06 1.3E-10 75.2 4.4 64 10-79 21-85 (265)
377 PRK15439 autoinducer 2 ABC tra 98.0 5.2E-06 1.1E-10 82.8 4.0 41 35-80 287-328 (510)
378 TIGR03719 ABC_ABC_ChvD ATP-bin 98.0 3.4E-06 7.3E-11 85.0 2.6 37 35-76 346-382 (552)
379 KOG0054|consensus 98.0 1.1E-05 2.5E-10 87.6 6.7 118 16-145 1150-1293(1381)
380 PRK11819 putative ABC transpor 98.0 3.6E-06 7.8E-11 84.8 2.6 37 35-76 348-384 (556)
381 PF13671 AAA_33: AAA domain; P 98.0 5E-06 1.1E-10 68.0 2.9 32 39-70 1-32 (143)
382 TIGR01271 CFTR_protein cystic 98.0 1.7E-05 3.6E-10 88.4 7.9 41 35-81 1243-1284(1490)
383 COG4136 ABC-type uncharacteriz 98.0 5.9E-05 1.3E-09 63.4 9.2 44 35-80 26-70 (213)
384 PRK13948 shikimate kinase; Pro 98.0 1.1E-05 2.3E-10 70.1 5.0 37 34-70 7-43 (182)
385 PLN02796 D-glycerate 3-kinase 98.0 8.4E-06 1.8E-10 77.1 4.7 64 7-70 66-138 (347)
386 COG0488 Uup ATPase components 98.0 8E-06 1.7E-10 81.7 4.8 54 10-74 8-61 (530)
387 COG4172 ABC-type uncharacteriz 97.9 5.4E-05 1.2E-09 72.6 9.7 128 31-164 307-469 (534)
388 TIGR01313 therm_gnt_kin carboh 97.9 7.4E-06 1.6E-10 69.0 3.6 31 40-70 1-31 (163)
389 TIGR00954 3a01203 Peroxysomal 97.9 5E-06 1.1E-10 85.5 3.0 53 12-74 458-510 (659)
390 PRK10789 putative multidrug tr 97.9 7.3E-06 1.6E-10 82.8 4.1 41 35-80 339-380 (569)
391 PRK09825 idnK D-gluconate kina 97.9 1.1E-05 2.3E-10 69.6 4.5 31 36-66 2-32 (176)
392 PRK06217 hypothetical protein; 97.9 9.8E-06 2.1E-10 69.9 4.3 32 39-70 3-34 (183)
393 PRK13949 shikimate kinase; Pro 97.9 8.8E-06 1.9E-10 69.6 3.9 32 39-70 3-34 (169)
394 PRK11545 gntK gluconate kinase 97.9 1.4E-05 3E-10 67.9 4.7 28 43-70 1-28 (163)
395 PRK14527 adenylate kinase; Pro 97.9 1.1E-05 2.4E-10 70.0 3.9 37 34-70 3-39 (191)
396 COG0703 AroK Shikimate kinase 97.9 4.2E-05 9.2E-10 65.5 7.4 80 39-137 4-83 (172)
397 TIGR01663 PNK-3'Pase polynucle 97.9 3E-05 6.5E-10 77.5 7.4 105 33-201 365-469 (526)
398 PRK13477 bifunctional pantoate 97.9 1.2E-05 2.6E-10 80.0 4.5 40 36-77 283-322 (512)
399 PRK13545 tagH teichoic acids e 97.9 1.2E-05 2.5E-10 80.2 4.2 38 35-77 48-86 (549)
400 PRK06696 uridine kinase; Valid 97.9 1.6E-05 3.4E-10 70.9 4.6 40 34-75 19-63 (223)
401 cd02020 CMPK Cytidine monophos 97.9 1.2E-05 2.5E-10 65.9 3.5 31 39-69 1-31 (147)
402 KOG0055|consensus 97.9 3.2E-05 6.8E-10 82.8 7.4 106 35-145 1014-1144(1228)
403 TIGR01360 aden_kin_iso1 adenyl 97.9 1.2E-05 2.6E-10 68.9 3.6 33 37-69 3-35 (188)
404 PRK07667 uridine kinase; Provi 97.9 6.1E-06 1.3E-10 72.0 1.7 36 35-70 15-55 (193)
405 PRK13946 shikimate kinase; Pro 97.8 1.3E-05 2.9E-10 69.2 3.8 34 37-70 10-43 (184)
406 COG1119 ModF ABC-type molybden 97.8 1.9E-05 4.1E-10 71.0 4.5 55 16-81 41-97 (257)
407 COG4525 TauB ABC-type taurine 97.8 1.9E-05 4E-10 69.1 4.3 59 12-80 10-70 (259)
408 KOG3308|consensus 97.8 3.6E-05 7.8E-10 67.2 6.0 40 35-76 2-42 (225)
409 cd02021 GntK Gluconate kinase 97.8 1.8E-05 3.8E-10 65.7 3.8 32 39-70 1-32 (150)
410 TIGR00017 cmk cytidylate kinas 97.8 1.5E-05 3.3E-10 71.0 3.4 38 38-77 3-40 (217)
411 COG0283 Cmk Cytidylate kinase 97.8 1.4E-05 3.1E-10 70.5 2.9 38 38-77 5-42 (222)
412 COG1245 Predicted ATPase, RNas 97.8 0.00011 2.4E-09 71.4 9.2 54 14-72 344-397 (591)
413 PRK13409 putative ATPase RIL; 97.8 1.8E-05 3.9E-10 80.4 4.1 36 35-75 363-398 (590)
414 PRK09270 nucleoside triphospha 97.8 1.8E-05 4E-10 70.7 3.7 29 34-62 30-58 (229)
415 PRK14530 adenylate kinase; Pro 97.8 2.5E-05 5.4E-10 69.1 4.4 34 37-70 3-36 (215)
416 PRK06762 hypothetical protein; 97.8 1.9E-05 4.1E-10 66.7 3.5 33 37-69 2-36 (166)
417 TIGR02322 phosphon_PhnN phosph 97.8 1.9E-05 4.1E-10 67.5 3.5 26 37-62 1-26 (179)
418 COG4674 Uncharacterized ABC-ty 97.8 1.4E-05 3E-10 69.8 2.5 76 34-115 28-105 (249)
419 PRK12338 hypothetical protein; 97.8 5.1E-05 1.1E-09 71.2 6.5 34 36-69 3-37 (319)
420 TIGR01359 UMP_CMP_kin_fam UMP- 97.8 2.2E-05 4.7E-10 67.2 3.7 32 39-70 1-32 (183)
421 cd01130 VirB11-like_ATPase Typ 97.8 2.8E-05 6E-10 67.3 4.4 34 35-73 23-56 (186)
422 PLN03140 ABC transporter G fam 97.8 2.8E-05 6.2E-10 86.2 5.5 41 35-80 189-233 (1470)
423 cd03238 ABC_UvrA The excision 97.8 1.9E-05 4.2E-10 68.1 3.2 24 35-58 19-42 (176)
424 COG4138 BtuD ABC-type cobalami 97.7 2.7E-05 5.8E-10 67.0 3.8 40 35-80 23-63 (248)
425 PRK03839 putative kinase; Prov 97.7 2.7E-05 5.8E-10 66.8 3.8 32 39-70 2-33 (180)
426 COG4586 ABC-type uncharacteriz 97.7 2.4E-05 5.3E-10 71.4 3.7 40 34-78 47-87 (325)
427 PRK12337 2-phosphoglycerate ki 97.7 5.6E-05 1.2E-09 74.1 6.4 43 35-77 253-297 (475)
428 cd00820 PEPCK_HprK Phosphoenol 97.7 2.9E-05 6.3E-10 61.6 3.2 24 35-58 13-36 (107)
429 PRK05800 cobU adenosylcobinami 97.7 6.8E-05 1.5E-09 64.3 5.7 91 39-144 3-94 (170)
430 PTZ00265 multidrug resistance 97.7 3E-05 6.4E-10 86.2 4.3 41 35-80 409-451 (1466)
431 KOG0056|consensus 97.7 3.1E-05 6.7E-10 75.7 3.9 58 13-80 545-603 (790)
432 TIGR03238 dnd_assoc_3 dnd syst 97.7 3.5E-05 7.5E-10 75.7 4.2 47 35-90 30-78 (504)
433 COG4778 PhnL ABC-type phosphon 97.7 4.4E-05 9.5E-10 65.4 4.2 35 35-74 35-69 (235)
434 PRK05541 adenylylsulfate kinas 97.7 3.2E-05 6.9E-10 66.1 3.4 30 33-62 3-32 (176)
435 cd00464 SK Shikimate kinase (S 97.7 3.7E-05 8E-10 63.6 3.6 31 40-70 2-32 (154)
436 COG0563 Adk Adenylate kinase a 97.7 3.3E-05 7.1E-10 66.8 3.4 36 39-76 2-37 (178)
437 cd00227 CPT Chloramphenicol (C 97.7 4E-05 8.8E-10 65.5 3.8 30 36-65 1-30 (175)
438 PRK11860 bifunctional 3-phosph 97.7 2.7E-05 5.9E-10 80.1 3.1 64 9-78 418-481 (661)
439 COG4161 ArtP ABC-type arginine 97.6 0.00059 1.3E-08 58.2 10.5 157 35-208 26-217 (242)
440 PF13555 AAA_29: P-loop contai 97.6 5E-05 1.1E-09 54.2 3.3 26 36-61 22-47 (62)
441 COG1102 Cmk Cytidylate kinase 97.6 4.1E-05 9E-10 64.8 3.3 37 39-77 2-38 (179)
442 smart00382 AAA ATPases associa 97.6 6.3E-05 1.4E-09 59.4 4.3 27 37-63 2-28 (148)
443 PF00448 SRP54: SRP54-type pro 97.6 3.5E-05 7.7E-10 67.6 2.9 34 37-70 1-39 (196)
444 PRK13947 shikimate kinase; Pro 97.6 5.7E-05 1.2E-09 63.9 3.8 31 40-70 4-34 (171)
445 PF00004 AAA: ATPase family as 97.6 4.9E-05 1.1E-09 60.8 3.2 34 40-73 1-34 (132)
446 PLN03073 ABC transporter F fam 97.6 2.4E-05 5.3E-10 81.1 1.7 60 10-77 182-242 (718)
447 PLN02200 adenylate kinase fami 97.6 6.8E-05 1.5E-09 67.6 4.4 36 35-70 41-76 (234)
448 PLN03130 ABC transporter C fam 97.6 0.00018 3.8E-09 80.9 8.5 35 35-74 641-676 (1622)
449 TIGR02173 cyt_kin_arch cytidyl 97.6 5.5E-05 1.2E-09 63.7 3.6 31 39-69 2-32 (171)
450 cd03272 ABC_SMC3_euk Eukaryoti 97.6 5.3E-05 1.1E-09 67.9 3.6 25 37-61 23-47 (243)
451 TIGR00955 3a01204 The Eye Pigm 97.6 6.5E-05 1.4E-09 76.8 4.6 54 19-79 38-92 (617)
452 PRK14730 coaE dephospho-CoA ki 97.6 6.6E-05 1.4E-09 65.7 4.0 33 38-70 2-34 (195)
453 PRK14532 adenylate kinase; Pro 97.6 6.7E-05 1.4E-09 64.7 4.0 31 40-70 3-33 (188)
454 cd03273 ABC_SMC2_euk Eukaryoti 97.6 5.8E-05 1.3E-09 68.3 3.8 27 36-62 24-50 (251)
455 cd02019 NK Nucleoside/nucleoti 97.6 7.7E-05 1.7E-09 54.2 3.5 23 39-61 1-23 (69)
456 cd03274 ABC_SMC4_euk Eukaryoti 97.6 5.2E-05 1.1E-09 67.2 3.1 25 38-62 26-50 (212)
457 KOG0059|consensus 97.6 0.00034 7.4E-09 74.4 9.6 122 34-164 588-741 (885)
458 cd01428 ADK Adenylate kinase ( 97.5 8E-05 1.7E-09 64.1 4.0 31 40-70 2-32 (194)
459 PRK00889 adenylylsulfate kinas 97.5 7.5E-05 1.6E-09 63.7 3.7 28 35-62 2-29 (175)
460 PRK04182 cytidylate kinase; Pr 97.5 7.1E-05 1.5E-09 63.5 3.4 31 39-69 2-32 (180)
461 PRK00081 coaE dephospho-CoA ki 97.5 0.0001 2.2E-09 64.4 4.4 32 38-70 3-34 (194)
462 PLN03046 D-glycerate 3-kinase; 97.5 9.7E-05 2.1E-09 71.6 4.5 37 34-70 209-250 (460)
463 PTZ00088 adenylate kinase 1; P 97.5 0.00011 2.4E-09 66.1 4.6 34 37-70 6-39 (229)
464 PRK14531 adenylate kinase; Pro 97.5 9.6E-05 2.1E-09 63.7 4.1 31 39-69 4-34 (183)
465 PHA02530 pseT polynucleotide k 97.5 9.7E-05 2.1E-09 68.3 4.3 34 37-70 2-36 (300)
466 PLN03232 ABC transporter C fam 97.5 0.00029 6.4E-09 78.7 8.7 28 35-62 641-668 (1495)
467 KOG0061|consensus 97.5 0.00019 4.2E-09 73.3 6.5 41 34-76 53-94 (613)
468 PRK08154 anaerobic benzoate ca 97.5 0.00015 3.2E-09 68.0 5.2 42 28-69 124-165 (309)
469 cd03283 ABC_MutS-like MutS-lik 97.5 8.6E-05 1.9E-09 65.2 3.4 24 37-60 25-48 (199)
470 PRK03731 aroL shikimate kinase 97.5 0.00011 2.4E-09 62.3 3.9 32 39-70 4-35 (171)
471 cd03278 ABC_SMC_barmotin Barmo 97.5 8.5E-05 1.8E-09 65.1 3.3 27 35-62 21-47 (197)
472 TIGR00750 lao LAO/AO transport 97.5 0.00039 8.5E-09 64.8 7.9 61 5-70 7-72 (300)
473 COG4172 ABC-type uncharacteriz 97.5 0.0002 4.3E-09 68.8 5.9 62 35-98 34-96 (534)
474 cd02022 DPCK Dephospho-coenzym 97.5 0.0001 2.2E-09 63.4 3.7 31 39-70 1-31 (179)
475 PRK03846 adenylylsulfate kinas 97.4 0.00012 2.6E-09 63.9 4.0 32 30-61 17-48 (198)
476 PRK01184 hypothetical protein; 97.4 0.00012 2.7E-09 62.8 3.9 31 38-69 2-32 (184)
477 COG1419 FlhF Flagellar GTP-bin 97.4 8.9E-05 1.9E-09 71.2 3.2 36 35-70 201-243 (407)
478 TIGR01351 adk adenylate kinase 97.4 0.00011 2.3E-09 64.8 3.5 31 40-70 2-32 (210)
479 COG0645 Predicted kinase [Gene 97.4 0.0011 2.5E-08 56.4 9.5 33 38-70 2-34 (170)
480 TIGR00956 3a01205 Pleiotropic 97.4 9.6E-05 2.1E-09 81.9 3.8 45 35-80 85-130 (1394)
481 PLN02199 shikimate kinase 97.4 0.00017 3.7E-09 67.0 4.6 35 36-70 101-135 (303)
482 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00016 3.5E-09 59.5 4.1 30 34-63 19-48 (133)
483 PF13238 AAA_18: AAA domain; P 97.4 8.2E-05 1.8E-09 59.2 2.2 22 40-61 1-22 (129)
484 PRK04040 adenylate kinase; Pro 97.4 0.00016 3.5E-09 62.9 4.2 34 37-70 2-37 (188)
485 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00011 2.4E-09 70.0 3.2 40 34-74 75-114 (361)
486 PRK14528 adenylate kinase; Pro 97.4 0.00016 3.4E-09 62.7 3.9 32 39-70 3-34 (186)
487 PRK00625 shikimate kinase; Pro 97.4 0.00014 3E-09 62.6 3.6 32 39-70 2-33 (173)
488 COG4598 HisP ABC-type histidin 97.4 0.00017 3.8E-09 62.4 4.1 52 11-73 12-63 (256)
489 PRK02496 adk adenylate kinase; 97.4 0.00015 3.3E-09 62.3 3.6 32 39-70 3-34 (184)
490 PRK08356 hypothetical protein; 97.4 0.00024 5.2E-09 61.9 4.9 33 37-70 5-37 (195)
491 PRK14021 bifunctional shikimat 97.4 0.0012 2.5E-08 66.7 10.4 35 36-70 5-39 (542)
492 PRK14733 coaE dephospho-CoA ki 97.4 0.0002 4.4E-09 63.2 4.3 34 37-70 6-39 (204)
493 cd03279 ABC_sbcCD SbcCD and ot 97.3 0.00012 2.6E-09 64.6 2.7 24 37-60 28-51 (213)
494 PRK14721 flhF flagellar biosyn 97.3 0.00022 4.8E-09 69.4 4.7 26 35-60 189-214 (420)
495 TIGR00390 hslU ATP-dependent p 97.3 0.00028 6E-09 68.6 5.2 71 3-73 2-83 (441)
496 KOG0064|consensus 97.3 0.00012 2.5E-09 72.3 2.7 41 16-62 492-533 (728)
497 PRK10751 molybdopterin-guanine 97.3 0.00019 4.1E-09 61.7 3.7 27 36-62 5-31 (173)
498 PRK00279 adk adenylate kinase; 97.3 0.00023 4.9E-09 63.0 4.2 32 39-70 2-33 (215)
499 cd03243 ABC_MutS_homologs The 97.3 0.00017 3.7E-09 63.1 3.2 25 35-59 27-51 (202)
500 PRK00023 cmk cytidylate kinase 97.3 0.00017 3.8E-09 64.5 3.3 38 37-76 4-41 (225)
No 1
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=100.00 E-value=7e-70 Score=501.98 Aligned_cols=245 Identities=32% Similarity=0.485 Sum_probs=233.7
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHH
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDA 115 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~ 115 (298)
.+++|+|+||||||||.|+..||+. +++|||+||+|||+|++|+|+||+.+|+.+++|||++++++.+.||+++|.+.+
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a 81 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEA 81 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHH
Confidence 4569999999999999999999999 689999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC----------
Q psy8556 116 LFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN---------- 185 (298)
Q Consensus 116 ~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~---------- 185 (298)
.+.|++++.+|++||+||||++|++++++|+...|+.++++|.++.+.+...|...||+.|+++||++|+
T Consensus 82 ~~~i~~i~~~gk~PilvGGTglYi~all~gl~~~p~~~~~~r~~~~~~~~~~g~~~l~~~L~~~DP~~A~~i~pnd~~Ri 161 (300)
T PRK14729 82 LKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPSTPPVSSKIRIYVNNLFTLKGKSYLLEELKRVDFIRYESINKNDIYRI 161 (300)
T ss_pred HHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhCCcCCHHHH
Confidence 9999999999999999999999999999999888888999999999999999999999999999999988
Q ss_pred -------------------------------CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCcccccC
Q psy8556 186 -------------------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIG 234 (298)
Q Consensus 186 -------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~~~IG 234 (298)
+.+||++|++||++||+.|+++| |++||+.|++. +++.+.++|++||
T Consensus 162 ~RALEv~~~tG~~~s~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~Rv~~Ml~~G-lieEv~~l~~~-~~~~~~~~~~aIG 239 (300)
T PRK14729 162 KRSLEVYYQTGIPISQFLKKQNMFKNILAIGLKRPMEEMKSRIISRVNNMIDCG-LLSEIKSLLGK-GYNENTPAFKGIG 239 (300)
T ss_pred HHHHHHHHHhCCChHhhhhccCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhc-CCCCCCCcceeEc
Confidence 33589999999999999999999 99999999987 6777899999999
Q ss_pred hhhHHHHH-cCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCC
Q psy8556 235 YRQTWEYI-DGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLE 283 (298)
Q Consensus 235 yke~~~~l-~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~ 283 (298)
|||+++|| .|+++++++++.++++||||||||+||||++++++|++.++
T Consensus 240 YkE~~~yl~~g~~~l~e~~e~i~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~ 289 (300)
T PRK14729 240 YREFLLWKSRPCYMLNDIINLIVKNSFLYVKRQMTFFAKIPNVLWFHPDD 289 (300)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeecCCC
Confidence 99999999 89999999999999999999999999999999999998753
No 2
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-68 Score=490.86 Aligned_cols=248 Identities=44% Similarity=0.687 Sum_probs=239.6
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHH
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDA 115 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~ 115 (298)
++.+++|+||||||||.|+..||+.++++|||.||+|||+|++|+|+||+.+|+.++|||++|++++.+.||+.+|.+++
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a 81 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDA 81 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC----------
Q psy8556 116 LFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN---------- 185 (298)
Q Consensus 116 ~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~---------- 185 (298)
.+.+.++..+|++||+||||++|++++++|+++.|+.++.++++++..+.+.|+.+||+.|+.+||.+|.
T Consensus 82 ~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~~~~g~~~L~~~L~~~Dp~~a~~i~pnD~~Ri 161 (308)
T COG0324 82 LAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAELAELGNDALHAELKKIDPEAAAKIHPNDPQRI 161 (308)
T ss_pred HHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHHhcCCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ----------------------------------CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCccc
Q psy8556 186 ----------------------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMK 231 (298)
Q Consensus 186 ----------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~~ 231 (298)
+.++|+.|++||+.|++.|+++| |++||+.|+.. |+..+.+++|
T Consensus 162 ~RALEv~~~tGk~~s~~~~~~~~~~~~~~~~~~~l~~~r~~L~~rI~~R~d~Ml~~G-li~EV~~L~~~-g~~~~~~~~~ 239 (308)
T COG0324 162 IRALEVYYLTGKPISELQKRSRPILEPYDILIIALAADREVLYERINRRVDAMLEQG-LIEEVKALYAR-GLHLDLPAMQ 239 (308)
T ss_pred HHHHHHHHHHCCCHHHHhhcccCCCCCcceEEEEEeCCHHHHHHHHHHHHHHHHHcc-HHHHHHHHHhc-cCCccchHHH
Confidence 33689999999999999999999 99999999999 5889999999
Q ss_pred ccChhhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCCch
Q psy8556 232 CIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKN 285 (298)
Q Consensus 232 ~IGyke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~~~ 285 (298)
+|||||+++||.|+++++|+++.++.+||||||||+||||++..++|++...+.
T Consensus 240 ~iGy~e~~~yl~g~~~~~ea~~~~~~~TRqyAKRQ~TWfr~~~~~~w~~~~~~~ 293 (308)
T COG0324 240 AIGYKEILAYLDGGISLEEAIERIKTATRQYAKRQLTWFRNQLGVHWLDSESPD 293 (308)
T ss_pred hcCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccCcccceeccCCcc
Confidence 999999999999999999999999999999999999999999999999987653
No 3
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=100.00 E-value=4.9e-67 Score=480.71 Aligned_cols=243 Identities=43% Similarity=0.697 Sum_probs=233.2
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHHHHh
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFS 118 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~~ 118 (298)
+|+|+||||||||+|+..|++.+++++||+||+|||++++|+|++|++.|+.+++|||++++++.+.|++++|...+.+.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~ 80 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNA 80 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC-------------
Q psy8556 119 IKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN------------- 185 (298)
Q Consensus 119 i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~------------- 185 (298)
+.++.++|++||+||||++|++++++|+...|+.++++|..+++.+...|++++|+.|+++||++|+
T Consensus 81 i~~~~~~g~~pi~vGGTg~Yi~all~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~Ri~RA 160 (287)
T TIGR00174 81 IADITARGKIPLLVGGTGLYLKALLEGLSPTPSADKLIREQLEILAEEQGWDFLYNELKKVDPVAAAKIHPNDTRRVQRA 160 (287)
T ss_pred HHHHHhCCCCEEEEcCcHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHhcCCccHHHHHHH
Confidence 9999999999999999999999999999888888999999999999999999999999999999987
Q ss_pred ------------------------------CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCcccccCh
Q psy8556 186 ------------------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGY 235 (298)
Q Consensus 186 ------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~~~IGy 235 (298)
+.+||++|++||++||+.|+++| |++||+.|++. ++..+.+++++|||
T Consensus 161 LEi~~~tG~~~s~~~~~~~~~~~~~~~~i~l~~dr~~L~~rI~~Rv~~Mi~~G-l~eEv~~l~~~-~~~~~~~~~~aIGY 238 (287)
T TIGR00174 161 LEVFYATGKPPSELFKEQKIELFYDAVQIGLASSREPLHQRIEQRVHDMLESG-LLAEVKALYAQ-YDLCDLPSIQAIGY 238 (287)
T ss_pred HHHHHHHCCChHHHhhccCCCCCCCeEEEEECCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhc-cCCcCCchhhhccH
Confidence 33589999999999999999999 99999999987 56668999999999
Q ss_pred hhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCC
Q psy8556 236 RQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLE 283 (298)
Q Consensus 236 ke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~ 283 (298)
||+++||+|+++++++++.++++||||||||+||||++++++|+|+++
T Consensus 239 kE~~~~l~g~~~~~e~ie~i~~~Tr~yAKRQ~TWfR~~~~~~~~~~~~ 286 (287)
T TIGR00174 239 KEFLLYLEGTVSLEDAIERIKCNTRQYAKRQLTWFRKWSDVLWLDSTD 286 (287)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEeCCCC
Confidence 999999999999999999999999999999999999999999999765
No 4
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=100.00 E-value=2.9e-65 Score=474.32 Aligned_cols=258 Identities=43% Similarity=0.672 Sum_probs=243.0
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHH
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDA 115 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~ 115 (298)
++.+|+|+||||||||+|+..||+.+++++||+||+|||++++|+|++|+..|+.+++|||++..++.+.|++.+|.+.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a 82 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA 82 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC----------
Q psy8556 116 LFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN---------- 185 (298)
Q Consensus 116 ~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~---------- 185 (298)
.+.+.++..+|++||+||||++|+++++.++...|+.++.+|.++.....+.|+..+|+.|+++||.+|+
T Consensus 83 ~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~~d~~Ri 162 (307)
T PRK00091 83 LAAIADILARGKLPILVGGTGLYIKALLEGLSPLPPADPELRAELEALAAEEGWEALHAELAEIDPEAAARIHPNDPQRI 162 (307)
T ss_pred HHHHHHHHhCCCCEEEECcHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhcCCCCCchh
Confidence 9999999999999999999999999999998888999999999999999999999999999999999876
Q ss_pred --------------------------------CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCccccc
Q psy8556 186 --------------------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCI 233 (298)
Q Consensus 186 --------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~~~I 233 (298)
+.+||++|++||++||+.|+++| |++||+.|++. ++..+.+++++|
T Consensus 163 ~RAlEi~~~tG~~~s~~~~~~~~~~~~~~~~~l~~dr~~L~~rI~~Rv~~Ml~~G-l~eEv~~l~~~-~~~~~~~~~~aI 240 (307)
T PRK00091 163 IRALEVYELTGKPLSELQKRGKPPPYRVLIIGLDPDREELYERINQRVDQMLEQG-LLEEVRALLAR-GYLPDLPAMRAI 240 (307)
T ss_pred HHHHHHHHHHCCChhhhhhccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHc-CCCCCCccceee
Confidence 33589999999999999999999 99999999987 566789999999
Q ss_pred ChhhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCCchHHHHHHHHHH
Q psy8556 234 GYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIK 295 (298)
Q Consensus 234 Gyke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~~~~~~~~~~~~~ 295 (298)
||||+++||+|+++++++++.++.+||||||||+||||++.+++|++....+..+.+++.|.
T Consensus 241 GykE~~~yl~g~~s~~e~~e~i~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~~~~~~i~~~i~ 302 (307)
T PRK00091 241 GYKELLAYLDGEISLEEAIEKIKQATRQYAKRQLTWFRRQPDIHWLDLSPEEALEEILRLLE 302 (307)
T ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeecCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999665555667766554
No 5
>PLN02840 tRNA dimethylallyltransferase
Probab=100.00 E-value=1.7e-62 Score=468.70 Aligned_cols=257 Identities=33% Similarity=0.502 Sum_probs=232.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCED 114 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~ 114 (298)
+++.+|+|+||||||||||+..|++.+++++|++|++|+|++++|+|++|+.+|+.+++|||+++++|.+.|++++|.++
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~~ 98 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFDD 98 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHHH
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHh----hCHHHHHHHH-hcCCccccC----
Q psy8556 115 ALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINK----YGISFLYDKL-KLLDPVTAN---- 185 (298)
Q Consensus 115 ~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~----~g~~~l~~~L-~~~Dp~~a~---- 185 (298)
+.+.+.++..+|++||+||||++|++++++|+...|+.+++++.+++..+.+ .|++++++.| +.+|| +|+
T Consensus 99 A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~~~p~~~~~~r~~l~~~l~~~~~~~g~~~l~~~Ll~~~DP-~A~~i~p 177 (421)
T PLN02840 99 ARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPEITSEVWSELVDFQKNGDWDAAVELVVNAGDP-KARSLPR 177 (421)
T ss_pred HHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhccccCHHHHHHHHHhccCc-HHHhcCC
Confidence 9999999999999999999999999999999988898899999988887776 3588889985 55688 555
Q ss_pred ----------------------C---------------------------------------CCChHHHHHHHHHHHHHH
Q psy8556 186 ----------------------Q---------------------------------------PSNRHILHKRISDRFKKM 204 (298)
Q Consensus 186 ----------------------~---------------------------------------~~~r~~L~~ri~~Rv~~M 204 (298)
. ..||++||+||+.||++|
T Consensus 178 nD~~Ri~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~L~~dR~~Ly~RI~~Rvd~M 257 (421)
T PLN02840 178 NDWYRLRRSLEIIKSSGSPPSAFSLPYDSFREQLVTEDTDSSLEDGSSAETELDYDFLCFFLSSPRLDLYRSIDLRCEEM 257 (421)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHhhccccchhhccccccccccccccccccCCCCCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 1 127999999999999999
Q ss_pred Hh--ccchHHHHHHHHHhcCCCCC-CCcccccChhhHHHHHc------CCCCHHHHH---HHHHHHHHHHHhHHHHHhcC
Q psy8556 205 LD--QDLLINEVKKIRKKWNLNLN-LPSMKCIGYRQTWEYID------GLIDRNTLK---EKSIIATRQLAKQQLTWLRN 272 (298)
Q Consensus 205 ~~--~G~l~~Ev~~l~~~~~~~~~-~~~~~~IGyke~~~~l~------g~~~~~~~~---~~~~~~tr~yakrQ~twfr~ 272 (298)
++ +| |++||+.|++. ++.++ .+++++|||||+++||+ |++++++++ +.++++||||||||+||||+
T Consensus 258 l~~~~G-LleEV~~Ll~~-g~~~~~~~a~~aIGYkE~~~yL~~~~~~~G~~s~ee~~~~~e~i~~~TRqYAKRQ~TWFR~ 335 (421)
T PLN02840 258 LAGTNG-ILSEASWLLDL-GLLPNSNSATRAIGYRQAMEYLLQCRQNGGESSPQEFLAFLSKFQTASRNFAKRQMTWFRN 335 (421)
T ss_pred HHcccC-HHHHHHHHHHc-CCCccccchHHHhcHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99 99 99999999998 56655 69999999999999999 999999776 99999999999999999999
Q ss_pred CCCceeecCCCchHHHHHHHHHHh
Q psy8556 273 MNEKITIDCLEKNCVQKILNLIKD 296 (298)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~ 296 (298)
+++++|++.+++ .++++++|.+
T Consensus 336 ~~~~~w~~~~~~--~~~i~~~i~~ 357 (421)
T PLN02840 336 EPIYHWLDASQP--LEKILQFIYD 357 (421)
T ss_pred CCCCeEecCCCC--HHHHHHHHHH
Confidence 999999987542 4455555543
No 6
>PLN02748 tRNA dimethylallyltransferase
Probab=100.00 E-value=9.8e-61 Score=463.33 Aligned_cols=251 Identities=29% Similarity=0.448 Sum_probs=225.5
Q ss_pred cccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHH
Q psy8556 32 KLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQF 111 (298)
Q Consensus 32 ~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f 111 (298)
.+..++.+|+|+||||||||+|+..||+.++++|||+|++|||+|++|+|+||+.+|+.++||||++++++.+.|++.+|
T Consensus 17 ~~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F 96 (468)
T PLN02748 17 KQKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDF 96 (468)
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHH
Confidence 45577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCC--CCC--------CCHHHHHHH--HHHHHhhCHHHHHHHHhcC
Q psy8556 112 CEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINK--LPP--------ANLKLRTKF--NIDINKYGISFLYDKLKLL 179 (298)
Q Consensus 112 ~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~--~p~--------~d~~lr~~l--~~~~~~~g~~~l~~~L~~~ 179 (298)
.+.|.+.|.+++.+|++|||||||++|+++|++++.. .|+ .++.+|.++ ...+...|..++|+.|+++
T Consensus 97 ~~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~~~~~~~~~r~~l~~~~~~~~~g~~~l~~~L~~v 176 (468)
T PLN02748 97 RDHAVPLIEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVASVLDEHMDVESGLGNDDEDHGYELLKEL 176 (468)
T ss_pred HHHHHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcccccCCccccccccccCHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 9999999999999999999999999999999998642 232 236678887 4677788999999999999
Q ss_pred CccccC--------------------------------------------------CCCChHHHHHHHHHHHHHHHhccc
Q psy8556 180 DPVTAN--------------------------------------------------QPSNRHILHKRISDRFKKMLDQDL 209 (298)
Q Consensus 180 Dp~~a~--------------------------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~ 209 (298)
||.+|+ +.+||++|++||++||+.|+++|
T Consensus 177 DP~~A~rihpnD~rRI~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~RI~~Rvd~Mle~G- 255 (468)
T PLN02748 177 DPVAANRIHPNNHRKINRYLELYATTGVLPSKLYQGKAAENWGRISNSRFDCCFICVDADTAVLDRYVNQRVDCMIDAG- 255 (468)
T ss_pred CHHHHhhcCCccHHHHHHHHHHHHHHCcCHHHHhhhccccccccccCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHCC-
Confidence 998765 12389999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCcccccChhhHHHHHc--------CC----------------------------CCHHHHHH
Q psy8556 210 LINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYID--------GL----------------------------IDRNTLKE 253 (298)
Q Consensus 210 l~~Ev~~l~~~~~~~~~~~~~~~IGyke~~~~l~--------g~----------------------------~~~~~~~~ 253 (298)
|++||+.|+.. +.....+++|+||||||++||+ |+ .+++++++
T Consensus 256 lleEv~~l~~~-~~~~~~~~~qaIGykE~~~yL~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eaie 334 (468)
T PLN02748 256 LLDEVYDIYDP-GADYTRGLRQAIGVREFEDFLRLYLSRNENGELTSSSNNDKVMKENSRKILNFPHDDKLKILLDEAID 334 (468)
T ss_pred HHHHHHHHHhc-CCCCCcccceeEcHHHHHHHHHhcccccccccccccccccchhhhhhhccccccchhhhhhhHHHHHH
Confidence 99999999987 3444667899999999999998 65 37899999
Q ss_pred HHHHHHHHHHhHHHHHhcCC-----CCceeecCCCc
Q psy8556 254 KSIIATRQLAKQQLTWLRNM-----NEKITIDCLEK 284 (298)
Q Consensus 254 ~~~~~tr~yakrQ~twfr~~-----~~~~~~~~~~~ 284 (298)
.++.+||||||||+||||+. .+++|+|.++.
T Consensus 335 ~ik~~Tr~yAKRQ~tw~~rl~~~~~~~i~~lD~t~~ 370 (468)
T PLN02748 335 QVKLNTRRLVRRQKRRLHRLNTVFGWNIHYIDATEA 370 (468)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCeeEeechhh
Confidence 99999999999999999985 47899997754
No 7
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=100.00 E-value=2.9e-58 Score=417.61 Aligned_cols=209 Identities=41% Similarity=0.662 Sum_probs=187.8
Q ss_pred ceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCC
Q psy8556 71 ALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLP 150 (298)
Q Consensus 71 ~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p 150 (298)
+|||+|++|+|+||+.+|+.++||||++++++.+.||+++|.+.|.+.|.++.++|++||+||||++|++|+++|+.++|
T Consensus 1 mQvYr~ldIgTaKps~~e~~~vpHhlid~~~p~e~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~~~p 80 (253)
T PF01715_consen 1 MQVYRGLDIGTAKPSPEERAGVPHHLIDILDPDEEYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLADIP 80 (253)
T ss_dssp STTBTT-CTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS--TS
T ss_pred CCccCCCceeeCCCCHHHHcCCCEeeeeeecccCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChhhhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC-------------------------------------------CC
Q psy8556 151 PANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN-------------------------------------------QP 187 (298)
Q Consensus 151 ~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~-------------------------------------------~~ 187 (298)
+.|+.+|..++..+...|..+||+.|+++||.+|+ +.
T Consensus 81 ~~~~~~r~~~~~~~~~~~~~~l~~~L~~~DP~~A~~i~~nd~~Ri~RALei~~~tG~~~s~~~~~~~~~~~~~~~~i~L~ 160 (253)
T PF01715_consen 81 EVDPELRAELRAELEEEGNEELYEELKEVDPEAAAKIHPNDRRRIIRALEIYELTGKPPSEWQKKQKPPPRYDFLVIGLD 160 (253)
T ss_dssp SSHHHHHHHHHHHHHHSCHHHHHHHHHHC-HHHHCTS-TT-HHHHHHHHHHHHHHSS-HHHHHHCHHHCBSSEEEEEEEE
T ss_pred cccHHHHHHHHHHHHhccHHHHHHHHHhhCcHhhhcCCCCcHHHHHHHHHHHHhcCCChhHhhhcccccccCCeEEEEeC
Confidence 99999999999999999999999999999999987 44
Q ss_pred CChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCcccccChhhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHH
Q psy8556 188 SNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQL 267 (298)
Q Consensus 188 ~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~~~IGyke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~ 267 (298)
+||+.|++||++||++|+++| |++||+.|++. ++..+.+++++|||||+++||+|+++++++++.++.+||||||||+
T Consensus 161 ~~r~~L~~RI~~Rvd~Ml~~G-lleEv~~L~~~-~~~~~~~~~~aIGYkE~~~~l~g~~~~~e~~e~i~~~TrqyAKRQ~ 238 (253)
T PF01715_consen 161 RDREELYERINKRVDEMLEQG-LLEEVRALLER-GLPPDLPAMQAIGYKEFIDYLEGEISLEEAIERIKTNTRQYAKRQR 238 (253)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT-TGGTTSCGGGSTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHc-CCCCcchhceeeehHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999 99999999999 5778899999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceeecC
Q psy8556 268 TWLRNMNEKITIDC 281 (298)
Q Consensus 268 twfr~~~~~~~~~~ 281 (298)
||||++.+++|+|+
T Consensus 239 TWfr~~~~~~w~d~ 252 (253)
T PF01715_consen 239 TWFRNQPNIHWIDI 252 (253)
T ss_dssp HHHHTTSSEEEEET
T ss_pred HHhCCCCCCeeeeC
Confidence 99999999999985
No 8
>PLN02165 adenylate isopentenyltransferase
Probab=100.00 E-value=1.2e-54 Score=403.82 Aligned_cols=237 Identities=26% Similarity=0.340 Sum_probs=199.0
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCc-cchHHHH
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTK-SYSVIQF 111 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e-~~s~~~f 111 (298)
++.++++++|+||||||||||+..||+.++++||++|++|||+|++|+|++|+..++.+++||+++.+++.+ .|++.+|
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F 118 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEF 118 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHH
Confidence 567888999999999999999999999999999999999999999999999999999999999999999986 8999999
Q ss_pred HHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccCCCCChH
Q psy8556 112 CEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRH 191 (298)
Q Consensus 112 ~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~~~~r~ 191 (298)
.+.+...+.++..++++||+||||++|+++++.++.+ |..++. . -|...+-..+ ..++..--+..||+
T Consensus 119 ~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~d-pe~~p~--------~--tg~~~~s~~~-~~~~~~i~l~~dr~ 186 (334)
T PLN02165 119 RSLASLSISEITSRQKLPIVAGGSNSFIHALLADRFD-PEIYPF--------S--SGSSLISSDL-RYDCCFIWVDVSEP 186 (334)
T ss_pred HHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCC-CccChh--------h--cCCCcccccc-CCCeEEEEECCCHH
Confidence 9999999999999999999999999999999998643 222220 0 1111000000 11111111445999
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCC--CCCcccccChhhHHHHHc--------CCC------CHHHHHHHH
Q psy8556 192 ILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNL--NLPSMKCIGYRQTWEYID--------GLI------DRNTLKEKS 255 (298)
Q Consensus 192 ~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~--~~~~~~~IGyke~~~~l~--------g~~------~~~~~~~~~ 255 (298)
+|++||++||+.|+++| |++||+.|++. ++.. ..+++|+|||||+++||+ |++ +++++++.+
T Consensus 187 ~L~~RI~~Rvd~Ml~~G-lldEv~~L~~~-~~~~~~~~~~~qaIGYkE~~~yL~~~~~~~~~g~~~~~~~~~l~e~ie~i 264 (334)
T PLN02165 187 VLFEYLSKRVDEMMDSG-MFEELAEFYDP-VKSGSEPLGIRKAIGVPEFDRYFKKYPPENKMGKWDQARKAAYEEAVREI 264 (334)
T ss_pred HHHHHHHHHHHHHHHCC-HHHHHHHHHHc-cCCcccCCCceeEEcHHHHHHHHHhccccccCCccchhhhhhHHHHHHHH
Confidence 99999999999999999 99999999987 4544 458999999999999998 655 599999999
Q ss_pred HHHHHHHHhHHHHHhcCCCC----ceeecCCC
Q psy8556 256 IIATRQLAKQQLTWLRNMNE----KITIDCLE 283 (298)
Q Consensus 256 ~~~tr~yakrQ~twfr~~~~----~~~~~~~~ 283 (298)
+.+||||||||+||||++++ ++|+|.++
T Consensus 265 k~~TrqYAKRQ~TWfR~~~~~~~~~~~lD~t~ 296 (334)
T PLN02165 265 KENTCQLAKRQIEKIMKLKSAGWDIKRVDATA 296 (334)
T ss_pred HHHHHHHHHHHHHHhcCCcccCCcEEEEechh
Confidence 99999999999999999854 56788653
No 9
>KOG1384|consensus
Probab=100.00 E-value=2.3e-44 Score=328.66 Aligned_cols=224 Identities=29% Similarity=0.373 Sum_probs=185.1
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHH
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDA 115 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~ 115 (298)
|-++++|+|+||||||.|+..||..++++||+.|++|||+|++|+|++++..|..++||||++.+.+..+|++.+|...+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a 85 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA 85 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCH--HHHHHHHhcCCccccCCCCChHHH
Q psy8556 116 LFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGI--SFLYDKLKLLDPVTANQPSNRHIL 193 (298)
Q Consensus 116 ~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~--~~l~~~L~~~Dp~~a~~~~~r~~L 193 (298)
...+++++.+|++||++|||++|+++++.+-.+. ..|+-... .|. ..+ +-|+-.-=+..+..+|
T Consensus 86 ~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~-~~dp~~~~--------~g~~pS~l-----ryd~c~lWlda~~~VL 151 (348)
T KOG1384|consen 86 SRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDP-KIDPFSSN--------TGSIPSEL-----RYDCCFLWLDADQAVL 151 (348)
T ss_pred HHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCc-ccCccccc--------CCCCCccc-----ccceEEEEEecchHHH
Confidence 9999999999999999999999999999774332 11111000 000 000 1111000034589999
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCcccccChhhHHHHHcCC------C------CHHHHHHHHHHHHHH
Q psy8556 194 HKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYIDGL------I------DRNTLKEKSIIATRQ 261 (298)
Q Consensus 194 ~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~~~IGyke~~~~l~g~------~------~~~~~~~~~~~~tr~ 261 (298)
++++++|||+|++.| |+||++.++....-+...+.-++||+.|+..|++-. + .++++++.|+.+||+
T Consensus 152 ~~~l~~RVD~Ml~~G-l~eE~~~f~~~~~s~~~~~i~~~iGv~e~d~f~~~~~~~~~k~d~~~~~~l~~aie~iK~nT~~ 230 (348)
T KOG1384|consen 152 FERLDKRVDDMLESG-LLEELRDFYDPYNSSYRSGIRKAIGVPEFDGFKEFYPWLTDKWDLARKELLEKAIEAIKENTRR 230 (348)
T ss_pred HHHHHHHHHHHHHcc-hHHHHHHHhhhhhcCccccchhccCcHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999874333345567888888888887632 1 278999999999999
Q ss_pred HHhHHHHHhcCCC
Q psy8556 262 LAKQQLTWLRNMN 274 (298)
Q Consensus 262 yakrQ~twfr~~~ 274 (298)
|||||.+|+.+..
T Consensus 231 lakrQ~~~I~~l~ 243 (348)
T KOG1384|consen 231 LAKRQKRKIEKLF 243 (348)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999863
No 10
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=99.91 E-value=4.5e-24 Score=186.06 Aligned_cols=205 Identities=19% Similarity=0.255 Sum_probs=147.4
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcC-ccchHHHHHHHHH
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPT-KSYSVIQFCEDAL 116 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~-e~~s~~~f~~~~~ 116 (298)
++++|+||||+|||.++..||+.+++++|+.|+.|+|.+++++|++|++.++.++++.+++..... ..+++.+..+...
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~Li 81 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHERLI 81 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999877766554 3688888888777
Q ss_pred HhhHHHhhcCCceEEEchhHHHHHHHHccCCC-CCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccCCCCChHHHHH
Q psy8556 117 FSIKNILKKKKLPLLVGGTMLYFKALRDGINK-LPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHK 195 (298)
Q Consensus 117 ~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~-~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~~~~r~~L~~ 195 (298)
..+..+.. ++.+|+.|||-..++.+..+... .|..-. + .+++ ++ +++....
T Consensus 82 ~~v~~~~~-~~~~IlEGGSISLl~~m~~~~~w~~~f~w~-i-----------------~rl~--------l~-d~~~f~~ 133 (233)
T PF01745_consen 82 SEVNSYSA-HGGLILEGGSISLLNCMAQDPYWSLDFRWH-I-----------------RRLR--------LP-DEEVFMA 133 (233)
T ss_dssp HHHHTTTT-SSEEEEEE--HHHHHHHHH-TTTSSSSEEE-E-----------------EE--------------HHHHHH
T ss_pred HHHHhccc-cCceEEeCchHHHHHHHHhcccccCCCeEE-E-----------------EEEE--------CC-ChHHHHH
Confidence 77777766 78899999999999998865322 221100 0 0010 34 8999999
Q ss_pred HHHHHHHHHHhc-----cchHHHHHHHHHhcCCCCCCCccccc-ChhhHHHHHcCC-C-----------CHHHHHHHHHH
Q psy8556 196 RISDRFKKMLDQ-----DLLINEVKKIRKKWNLNLNLPSMKCI-GYRQTWEYIDGL-I-----------DRNTLKEKSII 257 (298)
Q Consensus 196 ri~~Rv~~M~~~-----G~l~~Ev~~l~~~~~~~~~~~~~~~I-Gyke~~~~l~g~-~-----------~~~~~~~~~~~ 257 (298)
|+.+||.+|+.- + +++|+..+++. +...++++.| ||+.++.|.+.. + ..+++++.|..
T Consensus 134 ra~~Rv~~ML~p~~~~~S-ll~EL~~lW~~---p~~r~~ledIdGyr~~i~~a~~~~v~~~~l~~~~~~~~~~Li~~ia~ 209 (233)
T PF01745_consen 134 RAKRRVRQMLRPDSSGPS-LLEELVALWND---PALRPILEDIDGYRYIIRFARKHQVTPDQLLSIDLDMLQELIEGIAE 209 (233)
T ss_dssp HHHHHHHHHHS--SSS---HHHHHHHHHTS---TTHHHHHTTSTTHHHHHHHHHHTT--GGGCCG-THHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCc-HHHHHHHHHhC---ccccchHhhhccHHHHHHHHHHhCCCHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999974 5 99999999976 4568899999 999999998632 1 25688999999
Q ss_pred HHHHHHhHHHHHhcCCC
Q psy8556 258 ATRQLAKQQLTWLRNMN 274 (298)
Q Consensus 258 ~tr~yakrQ~twfr~~~ 274 (298)
....||..|.+=|=..+
T Consensus 210 eY~~ha~~QEq~F~~~~ 226 (233)
T PF01745_consen 210 EYLEHAQWQEQEFPQVP 226 (233)
T ss_dssp HHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHhccCCc
Confidence 99999999999887653
No 11
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.32 E-value=1.7e-12 Score=114.54 Aligned_cols=148 Identities=21% Similarity=0.332 Sum_probs=101.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCe---EeecCCceEeccccCCC---------CCCCHHHHcccccccccccCc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCE---IISIDSALVYCDMDIGT---------NKPSIIEREITPHHLIDIIEP 102 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~---iis~Ds~qvy~g~~i~t---------~kp~~~e~~~v~~~l~~~~~~ 102 (298)
+++.+|+|.|+|||||||+++.|+..++++ +|+.|+ +|++....+ ..|.+.+...+..||..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~--YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g 83 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDD--YYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQG 83 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccc--cccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcC
Confidence 345899999999999999999999999865 888898 676554432 345566666666566555443
Q ss_pred Cc-cchHHHHHHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCC-----CCCCHHHHHHHHHHHHhhCHH---HHH
Q psy8556 103 TK-SYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKL-----PPANLKLRTKFNIDINKYGIS---FLY 173 (298)
Q Consensus 103 ~e-~~s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~-----p~~d~~lr~~l~~~~~~~g~~---~l~ 173 (298)
.. .....+|...-+.. ..+.-.+.-+|++.|...+...-+.++.++ .+.|..+-|++.+++.++|.+ .+-
T Consensus 84 ~~v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~ 162 (218)
T COG0572 84 KPVDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIE 162 (218)
T ss_pred CcccccccchhcccccC-CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHH
Confidence 32 23334444432222 233344566788888888777666665554 467888999999999988865 666
Q ss_pred HHHhcCCccccC
Q psy8556 174 DKLKLLDPVTAN 185 (298)
Q Consensus 174 ~~L~~~Dp~~a~ 185 (298)
+++..+-|.+..
T Consensus 163 qy~~~vkp~~~~ 174 (218)
T COG0572 163 QYVKTVRPMYEQ 174 (218)
T ss_pred HHHHhhChhhhh
Confidence 777777776655
No 12
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.13 E-value=1.2e-10 Score=109.53 Aligned_cols=145 Identities=18% Similarity=0.155 Sum_probs=92.6
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCCCCHHH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNKPSIIE 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~kp~~~e 88 (298)
..++.|+... .+++++. .-++|++++|+||||||||||++.||++.. +++|+|+ .|.++....|....
T Consensus 8 ~v~K~yg~~~-~l~~i~l-----~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-----~~~G~I~i~g~~vt~l~P~~R~ 76 (338)
T COG3839 8 NVRKSFGSFE-VLKDVNL-----DIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-----PTSGEILIDGRDVTDLPPEKRG 76 (338)
T ss_pred eeEEEcCCce-eeecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCCCChhHCC
Confidence 4567777665 5555555 224577899999999999999999999887 9999994 77787766666655
Q ss_pred Hcccccc--cccccCcCccchHHHH---------HH---HHHH--hhHHHhhcCCceEEEchhH---HHHHHHHcc----
Q psy8556 89 REITPHH--LIDIIEPTKSYSVIQF---------CE---DALF--SIKNILKKKKLPLLVGGTM---LYFKALRDG---- 145 (298)
Q Consensus 89 ~~~v~~~--l~~~~~~~e~~s~~~f---------~~---~~~~--~i~~i~~~~~~~IlvGGt~---~y~~~ll~~---- 145 (298)
+..+.+. |+..++..+++...-- .+ .+.+ .+.+++++ ++--++||.. ...+|++..
T Consensus 77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r-~P~~LSGGQrQRVAlaRAlVr~P~v~ 155 (338)
T COG3839 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR-KPLQLSGGQRQRVALARALVRKPKVF 155 (338)
T ss_pred EEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhc-CcccCChhhHHHHHHHHHHhcCCCEE
Confidence 5555542 2222333333222111 11 1111 12233333 3446899988 678999987
Q ss_pred CCCCCCC--CHHHHHHHHHHHHh
Q psy8556 146 INKLPPA--NLKLRTKFNIDINK 166 (298)
Q Consensus 146 ~~~~p~~--d~~lr~~l~~~~~~ 166 (298)
+.|.|-+ |..+|..++.++.+
T Consensus 156 L~DEPlSnLDa~lR~~mr~ei~~ 178 (338)
T COG3839 156 LLDEPLSNLDAKLRVLMRSEIKK 178 (338)
T ss_pred EecCchhHhhHHHHHHHHHHHHH
Confidence 6677754 77788777766553
No 13
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.13 E-value=3e-10 Score=101.20 Aligned_cols=145 Identities=19% Similarity=0.142 Sum_probs=83.5
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e 88 (298)
...++|..+.....-++.++-.- ++|++++|+||||||||||++.|++... +++|.| +.|.++... +..+
T Consensus 6 ~v~k~y~~~~~~~~~L~~v~l~i--~~Ge~vaI~GpSGSGKSTLLniig~ld~-----pt~G~v~i~g~d~~~l--~~~~ 76 (226)
T COG1136 6 NVSKIYGLGGEKVEALKDVNLEI--EAGEFVAIVGPSGSGKSTLLNLLGGLDK-----PTSGEVLINGKDLTKL--SEKE 76 (226)
T ss_pred eeEEEeccCCcceEecccceEEE--cCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEEcCcC--CHHH
Confidence 35677876654333344433332 6688999999999999999999977665 899997 688777643 3333
Q ss_pred Hccccccccccc----CcCccchHHHHHHH-----------HHHhhHHHhh--------cCCce-EEEchhH---HHHHH
Q psy8556 89 REITPHHLIDII----EPTKSYSVIQFCED-----------ALFSIKNILK--------KKKLP-LLVGGTM---LYFKA 141 (298)
Q Consensus 89 ~~~v~~~l~~~~----~~~e~~s~~~f~~~-----------~~~~i~~i~~--------~~~~~-IlvGGt~---~y~~~ 141 (298)
+..++..-++++ ..-+.+|+.+.... ..+.+.++.. ..+.| -++||-. ...+|
T Consensus 77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARA 156 (226)
T COG1136 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARA 156 (226)
T ss_pred HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHH
Confidence 333333222222 22234444444331 1112222211 11334 6899976 57799
Q ss_pred HHcc----CCCCCCC--CHHHHHHHHHH
Q psy8556 142 LRDG----INKLPPA--NLKLRTKFNID 163 (298)
Q Consensus 142 ll~~----~~~~p~~--d~~lr~~l~~~ 163 (298)
++.+ +.|.|+. |.+-...+.+.
T Consensus 157 L~~~P~iilADEPTgnLD~~t~~~V~~l 184 (226)
T COG1136 157 LINNPKIILADEPTGNLDSKTAKEVLEL 184 (226)
T ss_pred HhcCCCeEEeeCccccCChHHHHHHHHH
Confidence 9876 3456653 55544444433
No 14
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.08 E-value=4.6e-11 Score=104.57 Aligned_cols=118 Identities=21% Similarity=0.220 Sum_probs=70.9
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccc-------
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSY------- 106 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~------- 106 (298)
.++|++|+|+||||||||||++.|++.++. +|...+++|.+|...+..+..+++++.......+
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~~---------~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDPN---------LQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLE 72 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCcc---------ceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEE
Confidence 467899999999999999999999987641 4555666777777766666666554322111100
Q ss_pred --hH-HHHHHHHHHhhHHHhhcCCceEE---EchhHHHHHHHHcc--CCCCCCCCHHHHHHH
Q psy8556 107 --SV-IQFCEDALFSIKNILKKKKLPLL---VGGTMLYFKALRDG--INKLPPANLKLRTKF 160 (298)
Q Consensus 107 --s~-~~f~~~~~~~i~~i~~~~~~~Il---vGGt~~y~~~ll~~--~~~~p~~d~~lr~~l 160 (298)
++ ...+......+......|..+|+ .+|...+.+.+... +...|++...+++|+
T Consensus 73 ~~~~~~~~y~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl 134 (205)
T PRK00300 73 WAEVFGNYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRL 134 (205)
T ss_pred EEEECCccccCcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHH
Confidence 00 11111224456777788888776 45655555555433 222344445555554
No 15
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.07 E-value=9.5e-11 Score=100.40 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=67.6
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHH-------
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVI------- 109 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~------- 109 (298)
|++|+|+||||||||||++.|++.++...+ ...++|.+|...+..+..+++++...+...+..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~---------~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKF---------SISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAE 71 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccc---------cccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEE
Confidence 568999999999999999999987653222 1233455555555555555544322111111111
Q ss_pred ---HHHHHHHHhhHHHhhcCCceEE---EchhHHHHHHHHc--cCCCCCCCCHHHHHHHH
Q psy8556 110 ---QFCEDALFSIKNILKKKKLPLL---VGGTMLYFKALRD--GINKLPPANLKLRTKFN 161 (298)
Q Consensus 110 ---~f~~~~~~~i~~i~~~~~~~Il---vGGt~~y~~~ll~--~~~~~p~~d~~lr~~l~ 161 (298)
.++......+...+..|+.+|+ .+|...+.+++.. .+...|++++.+++++.
T Consensus 72 ~~~~~y~~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~ 131 (180)
T TIGR03263 72 VHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLR 131 (180)
T ss_pred ECCeeeCCcHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH
Confidence 1122224556777888999888 5666666666533 23334665666666553
No 16
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.04 E-value=6.1e-10 Score=105.28 Aligned_cols=145 Identities=18% Similarity=0.205 Sum_probs=87.5
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e 88 (298)
.++|.|+ ....++|++. .-++|++++|+|||||||||++++||+... +|+|+| +.|.++..-.|....
T Consensus 10 ~v~k~yg-~~~av~~isl-----~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-----p~~G~I~l~G~~i~~lpp~kR~ 78 (352)
T COG3842 10 NVSKSFG-DFTAVDDISL-----DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-----PSSGEILLDGEDITDVPPEKRP 78 (352)
T ss_pred eeeeecC-CeeEEeccee-----eecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCCCChhhcc
Confidence 4678888 4455556555 124567899999999999999999998876 999999 588888865555544
Q ss_pred Hcccccc--cccccCcCccchHH----------H---HHHHHHHhh--HHHhhcCCceEEEchhH---HHHHHHHcc---
Q psy8556 89 REITPHH--LIDIIEPTKSYSVI----------Q---FCEDALFSI--KNILKKKKLPLLVGGTM---LYFKALRDG--- 145 (298)
Q Consensus 89 ~~~v~~~--l~~~~~~~e~~s~~----------~---f~~~~~~~i--~~i~~~~~~~IlvGGt~---~y~~~ll~~--- 145 (298)
...+.+. |+..+++.++.-.+ + -...+.+.+ .+ ...-++.=++||-. -..+||...
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-~~~R~p~qLSGGQqQRVALARAL~~~P~v 157 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-FADRKPHQLSGGQQQRVALARALVPEPKV 157 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-hhhhChhhhChHHHHHHHHHHHhhcCcch
Confidence 4444332 22223333321110 0 111111111 11 11223335788877 467887765
Q ss_pred -CCCCC--CCCHHHHHHHHHHHHh
Q psy8556 146 -INKLP--PANLKLRTKFNIDINK 166 (298)
Q Consensus 146 -~~~~p--~~d~~lr~~l~~~~~~ 166 (298)
+.|.| .-|..+|..++.++.+
T Consensus 158 LLLDEPlSaLD~kLR~~mr~Elk~ 181 (352)
T COG3842 158 LLLDEPLSALDAKLREQMRKELKE 181 (352)
T ss_pred hhhcCcccchhHHHHHHHHHHHHH
Confidence 44556 3478888888777654
No 17
>PTZ00301 uridine kinase; Provisional
Probab=99.03 E-value=3e-10 Score=100.70 Aligned_cols=147 Identities=19% Similarity=0.234 Sum_probs=78.0
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhC----C---CeEeecCCceEeccccCCC---------CCCCHHHHcccccccccc
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYI----P---CEIISIDSALVYCDMDIGT---------NKPSIIEREITPHHLIDI 99 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l----~---~~iis~Ds~qvy~g~~i~t---------~kp~~~e~~~v~~~l~~~ 99 (298)
+..+|+|.||||||||||+..|++.+ + ..+++.|. +|+...... ..|...+...+.+++..+
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~--yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L 79 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDF--YYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLREL 79 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCC--CccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHH
Confidence 34789999999999999999887655 2 23667776 555432110 112222222222222222
Q ss_pred cCcCc-cchHHHHHHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCC-----CCCCHHHHHHHHHHHHhhCHH---
Q psy8556 100 IEPTK-SYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKL-----PPANLKLRTKFNIDINKYGIS--- 170 (298)
Q Consensus 100 ~~~~e-~~s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~-----p~~d~~lr~~l~~~~~~~g~~--- 170 (298)
..... .+...+|...... -..+.-.....|++.|...|...-+.++.++ .+.+..+.|++.|+..++|..
T Consensus 80 ~~g~~i~~P~yd~~~~~~~-~~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~ 158 (210)
T PTZ00301 80 KSGKTVQIPQYDYVHHTRS-DTAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFES 158 (210)
T ss_pred HcCCcccCCCcccccCCcC-CceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHH
Confidence 21110 0111112111000 0001112334577888887643333333332 456788888999998877654
Q ss_pred HHHHHHhcCCccccC
Q psy8556 171 FLYDKLKLLDPVTAN 185 (298)
Q Consensus 171 ~l~~~L~~~Dp~~a~ 185 (298)
.+.++...++|..+.
T Consensus 159 v~~~~~~~v~~~~~~ 173 (210)
T PTZ00301 159 VIEQYEATVRPMYYA 173 (210)
T ss_pred HHHHHHHhhcccHHH
Confidence 566677777876654
No 18
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.02 E-value=2.8e-09 Score=92.07 Aligned_cols=147 Identities=14% Similarity=0.070 Sum_probs=90.5
Q ss_pred hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCC--
Q psy8556 9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPS-- 85 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~-- 85 (298)
.+++|.||.+..-+.++++ +-++|+++.|+||||||||||++.|.+... +++|+| +.|.++...+-.
T Consensus 5 ~~V~k~Y~~g~~aL~~vs~-----~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-----pt~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 5 ENVSKAYPGGREALRDVSF-----HIPKGEFVFLTGPSGAGKSTLLKLIYGEER-----PTRGKILVNGHDLSRLKGREI 74 (223)
T ss_pred hhhhhhcCCCchhhhCceE-----eecCceEEEEECCCCCCHHHHHHHHHhhhc-----CCCceEEECCeeccccccccc
Confidence 4689999999767788777 234567899999999999999999988776 889998 688888754321
Q ss_pred HHHHccc---c--cccccccCcCccc---------hHHHHHHHHHHhhHHHh----hcCCceEEEchhH---HHHHHHHc
Q psy8556 86 IIEREIT---P--HHLIDIIEPTKSY---------SVIQFCEDALFSIKNIL----KKKKLPLLVGGTM---LYFKALRD 144 (298)
Q Consensus 86 ~~e~~~v---~--~~l~~~~~~~e~~---------s~~~f~~~~~~~i~~i~----~~~~~~IlvGGt~---~y~~~ll~ 144 (298)
+.-++.+ . |.|+...+..++. +-.++.+.+.+.++-.- .+.-++.++||-. ...+|+++
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~ 154 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN 154 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc
Confidence 1111221 1 1233333333322 12233333333332211 1222447899977 56788887
Q ss_pred c----CCCCCC--CCHHHHHHHHHHHH
Q psy8556 145 G----INKLPP--ANLKLRTKFNIDIN 165 (298)
Q Consensus 145 ~----~~~~p~--~d~~lr~~l~~~~~ 165 (298)
. +.|.|+ .|+++.+++.+.+.
T Consensus 155 ~P~vLlADEPTGNLDp~~s~~im~lfe 181 (223)
T COG2884 155 QPAVLLADEPTGNLDPDLSWEIMRLFE 181 (223)
T ss_pred CCCeEeecCCCCCCChHHHHHHHHHHH
Confidence 6 446675 37877777655443
No 19
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.94 E-value=8e-09 Score=90.93 Aligned_cols=140 Identities=18% Similarity=0.212 Sum_probs=78.3
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHH
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIER 89 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~ 89 (298)
.+|.|+ +.+.+++++. .-.+|++++|+||||||||||+++|.++-. +|+|+| +.|.++.... ....+
T Consensus 8 l~K~fg-~~~VLkgi~l-----~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-----~~~G~I~i~g~~~~~~~-~~~~~ 75 (240)
T COG1126 8 LSKSFG-DKEVLKGISL-----SVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-----PDSGSITVDGEDVGDKK-DILKL 75 (240)
T ss_pred eeEEeC-CeEEecCcce-----eEcCCCEEEEECCCCCCHHHHHHHHHCCcC-----CCCceEEECCEeccchh-hHHHH
Confidence 456665 4455555555 225678999999999999999999987665 899999 4776654332 11111
Q ss_pred ----cccccc--cccccCcCccchHHHH------HHHHHHhhHHHhh-------cCCce-EEEchhH---HHHHHHHcc-
Q psy8556 90 ----EITPHH--LIDIIEPTKSYSVIQF------CEDALFSIKNILK-------KKKLP-LLVGGTM---LYFKALRDG- 145 (298)
Q Consensus 90 ----~~v~~~--l~~~~~~~e~~s~~~f------~~~~~~~i~~i~~-------~~~~~-IlvGGt~---~y~~~ll~~- 145 (298)
.-+.++ |+..++..++.+.+.- ...|.+...++++ ....| -++||-. -..+||.-.
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 122222 2222333333322211 1122222222221 12334 5789977 466777643
Q ss_pred ---CCCCCCC--CHHHHHHHHH
Q psy8556 146 ---INKLPPA--NLKLRTKFNI 162 (298)
Q Consensus 146 ---~~~~p~~--d~~lr~~l~~ 162 (298)
++|.|++ ||++...+..
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~ 177 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLD 177 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHH
Confidence 5677754 8988776644
No 20
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.93 E-value=5.7e-09 Score=96.99 Aligned_cols=142 Identities=16% Similarity=0.103 Sum_probs=83.7
Q ss_pred hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCC-H
Q psy8556 9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPS-I 86 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~-~ 86 (298)
...++.|+.+...++++++ .-++|++++|+||||||||||+++|++... +++|.| +.|.+....... .
T Consensus 8 ~~l~k~~~~~~~~l~~vs~-----~i~~Gei~gllG~NGAGKTTllk~l~gl~~-----p~~G~i~i~G~~~~~~~~~~~ 77 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSF-----EVEPGEIFGLLGPNGAGKTTLLKILAGLLK-----PTSGEILVLGYDVVKEPAKVR 77 (293)
T ss_pred cceEEEeCCCCEEEeceeE-----EEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEEcCEeCccCHHHHH
Confidence 3467788766677777776 224466899999999999999999988776 899999 688776643111 1
Q ss_pred HHHcccccccccccCcCccchHHHHHHHH-----------HHhhHHHhhc--------CCceEEEchhH---HHHHHHHc
Q psy8556 87 IEREITPHHLIDIIEPTKSYSVIQFCEDA-----------LFSIKNILKK--------KKLPLLVGGTM---LYFKALRD 144 (298)
Q Consensus 87 ~e~~~v~~~l~~~~~~~e~~s~~~f~~~~-----------~~~i~~i~~~--------~~~~IlvGGt~---~y~~~ll~ 144 (298)
..+..+++. ....+.+|+.++.... .+.+.++++. .++--+++|.. ....+++.
T Consensus 78 ~~igy~~~~----~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~ 153 (293)
T COG1131 78 RRIGYVPQE----PSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH 153 (293)
T ss_pred hheEEEccC----CCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc
Confidence 222333332 2233444544433321 1122222211 11233677766 46677776
Q ss_pred c----CCCCCCC--CHHHHHHHHHHH
Q psy8556 145 G----INKLPPA--NLKLRTKFNIDI 164 (298)
Q Consensus 145 ~----~~~~p~~--d~~lr~~l~~~~ 164 (298)
+ +.|.|.+ |+..+..+.+.+
T Consensus 154 ~P~lliLDEPt~GLDp~~~~~~~~~l 179 (293)
T COG1131 154 DPELLILDEPTSGLDPESRREIWELL 179 (293)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHH
Confidence 5 3456653 676666655443
No 21
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.90 E-value=1e-09 Score=99.67 Aligned_cols=54 Identities=24% Similarity=0.311 Sum_probs=44.3
Q ss_pred hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 18 QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
+..++.|+++ .-++|++++|+||||||||||+++|++.++ +.+|+| ..|.++.+
T Consensus 14 ~~~il~~ls~-----~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-----p~~G~V~l~g~~i~~ 68 (258)
T COG1120 14 GKPILDDLSF-----SIPKGEITGILGPNGSGKSTLLKCLAGLLK-----PKSGEVLLDGKDIAS 68 (258)
T ss_pred CeeEEecceE-----EecCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCCchhh
Confidence 6677777776 224567999999999999999999998887 899999 48877765
No 22
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.90 E-value=4.2e-09 Score=93.40 Aligned_cols=72 Identities=19% Similarity=0.124 Sum_probs=56.0
Q ss_pred ccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHcc
Q psy8556 13 ETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREI 91 (298)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~ 91 (298)
++|++..+.+.+.++ .-++|++++|+||||+|||||++.|++..+ +.+|+| |.|.+++..+|...-..+
T Consensus 10 ~~~YG~~~~L~gvsl-----~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-----~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 10 SAGYGKIQALRGVSL-----EVERGEIVALLGRNGAGKTTLLKTIMGLVR-----PRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred eecccceeEEeeeee-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeeEEECCeecCCCCHHHHHhCC
Confidence 456666887777776 224577999999999999999999998877 778998 799999876666655555
Q ss_pred ccc
Q psy8556 92 TPH 94 (298)
Q Consensus 92 v~~ 94 (298)
+.+
T Consensus 80 i~~ 82 (237)
T COG0410 80 IAY 82 (237)
T ss_pred eEe
Confidence 543
No 23
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.89 E-value=3.1e-09 Score=95.33 Aligned_cols=141 Identities=18% Similarity=0.143 Sum_probs=79.6
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e 88 (298)
.++++|++ ...+.|+++ .. .+|++++|+||||||||||++.+|++.. +++|+| ..|..+. .|.+ +
T Consensus 8 ~v~~~f~~-~~vl~~i~L---~v--~~GEfvsilGpSGcGKSTLLriiAGL~~-----p~~G~V~~~g~~v~--~p~~-~ 73 (248)
T COG1116 8 GVSKSFGG-VEVLEDINL---SV--EKGEFVAILGPSGCGKSTLLRLIAGLEK-----PTSGEVLLDGRPVT--GPGP-D 73 (248)
T ss_pred eeEEEeCc-eEEecccee---EE--CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCcccC--CCCC-C
Confidence 45667776 333333333 22 5688999999999999999999999887 889988 4666652 2221 2
Q ss_pred Hccccc--ccccccCcCccchHH---------HHHHHHHHhhHHH---hhcCCce-EEEchhH---HHHHHHHcc----C
Q psy8556 89 REITPH--HLIDIIEPTKSYSVI---------QFCEDALFSIKNI---LKKKKLP-LLVGGTM---LYFKALRDG----I 146 (298)
Q Consensus 89 ~~~v~~--~l~~~~~~~e~~s~~---------~f~~~~~~~i~~i---~~~~~~~-IlvGGt~---~y~~~ll~~----~ 146 (298)
+..+.+ .|+...+..+|..+. +-...+.+.++.. -..++.| -++||.. ...+++... +
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLL 153 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLL 153 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEE
Confidence 233322 222223333332211 1111222222211 0123444 5899987 577888865 4
Q ss_pred CCCCCC--CHHHHHHHHHHH
Q psy8556 147 NKLPPA--NLKLRTKFNIDI 164 (298)
Q Consensus 147 ~~~p~~--d~~lr~~l~~~~ 164 (298)
.|.|.+ |.-.|..+.+++
T Consensus 154 lDEPFgALDalTR~~lq~~l 173 (248)
T COG1116 154 LDEPFGALDALTREELQDEL 173 (248)
T ss_pred EcCCcchhhHHHHHHHHHHH
Confidence 466643 666666665544
No 24
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.88 E-value=1.1e-08 Score=90.04 Aligned_cols=62 Identities=19% Similarity=0.154 Sum_probs=47.0
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
.+..|+++...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.+.
T Consensus 6 l~~~~~~~~~~l~~~sl-----~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~ 68 (214)
T cd03292 6 VTKTYPNGTAALDGINI-----SISAGEFVFLVGPSGAGKSTLLKLIYKEEL-----PTSGTIRVNGQDVSDL 68 (214)
T ss_pred EEEEeCCCceeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcccC
Confidence 45667655556666655 224577899999999999999999998876 789998 677776543
No 25
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=5.8e-09 Score=91.92 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=44.6
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 6 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~ 66 (213)
T cd03259 6 LSKTYGS-VRALDDLSL-----TVEPGEFLALLGPSGCGKTTLLRLIAGLER-----PDSGEILIDGRDVTG 66 (213)
T ss_pred eEEEeCC-eeeecceeE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcCc
Confidence 4556654 345555554 224577899999999999999999998776 789998 57766643
No 26
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.87 E-value=2.2e-09 Score=92.44 Aligned_cols=116 Identities=18% Similarity=0.140 Sum_probs=78.6
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchH-------
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSV------- 108 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~------- 108 (298)
+|.+++|+||||+|||||.+.|.... .+.-.++.+|.+|.+.|..++.+|+++...+.....-
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~----------~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a 72 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD----------KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWA 72 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc----------CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEE
Confidence 68899999999999999999997654 2444456789999999999999998875443322221
Q ss_pred ---HHHHHHHHHhhHHHhhcCCceEEE-chhH-HHHHHHHcc---CCCCCCCCHHHHHHHH
Q psy8556 109 ---IQFCEDALFSIKNILKKKKLPLLV-GGTM-LYFKALRDG---INKLPPANLKLRTKFN 161 (298)
Q Consensus 109 ---~~f~~~~~~~i~~i~~~~~~~Ilv-GGt~-~y~~~ll~~---~~~~p~~d~~lr~~l~ 161 (298)
+.|+......+...+..|+.+|+. ..-+ ..++.-+-+ ++..||+-.++++|+.
T Consensus 73 ~~~gnyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~ 133 (191)
T COG0194 73 EYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLK 133 (191)
T ss_pred EEcCCcccCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHH
Confidence 234444566777888888888763 3222 233333322 3455887676666653
No 27
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=1.6e-08 Score=90.71 Aligned_cols=61 Identities=23% Similarity=0.281 Sum_probs=45.3
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|+++...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 6 l~~~~~~~~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~ 67 (241)
T cd03256 6 LSKTYPNGKKALKDVSL-----SINPGEFVALIGPSGAGKSTLLRCLNGLVE-----PTSGSVLIDGTDINK 67 (241)
T ss_pred EEEecCCccEEEecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEeccc
Confidence 45667653445566554 224577899999999999999999998876 788998 57766653
No 28
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.84 E-value=2.3e-08 Score=86.22 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=36.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
++|++++|+||||||||||++.|++.++ +++|+| +.|.++...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 67 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKPVTRR 67 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCcc
Confidence 5678999999999999999999998876 889998 577666543
No 29
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.84 E-value=2.2e-08 Score=89.52 Aligned_cols=181 Identities=15% Similarity=0.142 Sum_probs=98.4
Q ss_pred hcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH
Q psy8556 11 DTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI 86 (298)
Q Consensus 11 ~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~ 86 (298)
.+.+|+.+. ..++++++ .-.+|++++|+|+||||||||++.|++... +++|+| +.|......++..
T Consensus 9 l~~~y~~~~~~~~~l~~VS~-----~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-----p~~G~I~~~G~~~~~~~~~~ 78 (252)
T COG1124 9 LSIVYGGGKFAFHALNNVSL-----EIERGETLGIVGESGSGKSTLARLLAGLEK-----PSSGSILLDGKPLAPKKRAK 78 (252)
T ss_pred eEEEecCCcchhhhhcceeE-----EecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCcccCccccch
Confidence 456787777 45555555 224577899999999999999999998877 899999 5776655433333
Q ss_pred ---HHHcccccccccccCcCccchHHHHHHHHHH---------hhHHHhh---------cCCceEEEchhH---HHHHHH
Q psy8556 87 ---IEREITPHHLIDIIEPTKSYSVIQFCEDALF---------SIKNILK---------KKKLPLLVGGTM---LYFKAL 142 (298)
Q Consensus 87 ---~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~---------~i~~i~~---------~~~~~IlvGGt~---~y~~~l 142 (298)
...+.+.++-..-+.|. .++.+-...+.. .+.+++. .-.+.=++||-- -..+|+
T Consensus 79 ~~~~~VQmVFQDp~~SLnP~--~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL 156 (252)
T COG1124 79 AFYRPVQMVFQDPYSSLNPR--RTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARAL 156 (252)
T ss_pred hhccceeEEecCCccccCcc--hhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHh
Confidence 23333444433333332 233222221111 1222221 223334788866 466777
Q ss_pred Hcc----CCCCCCC--CHHHHHHHHHHHHhhCHHHHHHHHhcCCccccCCCCChHHHHHHHHHHHHHHHhccchHHH
Q psy8556 143 RDG----INKLPPA--NLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINE 213 (298)
Q Consensus 143 l~~----~~~~p~~--d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~~~~r~~L~~ri~~Rv~~M~~~G~l~~E 213 (298)
.-. +.|.|.+ |..++..+.+.+.+.... .+-.+--+. .--.+-.+++.||--| ++|.++|+
T Consensus 157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~--------~~lt~l~Is-Hdl~~v~~~cdRi~Vm-~~G~ivE~ 223 (252)
T COG1124 157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKE--------RGLTYLFIS-HDLALVEHMCDRIAVM-DNGQIVEI 223 (252)
T ss_pred ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh--------cCceEEEEe-CcHHHHHHHhhheeee-eCCeEEEe
Confidence 744 3455543 677777765554332111 000000011 2335566788888554 45524443
No 30
>PRK15453 phosphoribulokinase; Provisional
Probab=98.83 E-value=2.7e-09 Score=97.91 Aligned_cols=151 Identities=17% Similarity=0.126 Sum_probs=80.6
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCCceEec--cc------------cCCCCCCCHHHHcccc
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDSALVYC--DM------------DIGTNKPSIIEREITP 93 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds~qvy~--g~------------~i~t~kp~~~e~~~v~ 93 (298)
|++++.+|+|+|+|||||||+++.|+..++ ..+++.|+..-|. ++ ++..-.|.+.+...+.
T Consensus 1 Ms~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 1 MSAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 467889999999999999999999998764 4578888844331 11 1111113333333222
Q ss_pred cccccccCcC----ccchHHHHHH---H--HHHhh--HHHhhcCCceEEEchhHHH-HH--HHHccCCCC-----CCCCH
Q psy8556 94 HHLIDIIEPT----KSYSVIQFCE---D--ALFSI--KNILKKKKLPLLVGGTMLY-FK--ALRDGINKL-----PPANL 154 (298)
Q Consensus 94 ~~l~~~~~~~----e~~s~~~f~~---~--~~~~i--~~i~~~~~~~IlvGGt~~y-~~--~ll~~~~~~-----p~~d~ 154 (298)
.++....... ..|. .+|.+ . ..... .+....+.-.|+++|.+.+ .. .-+..+.|+ |+.+.
T Consensus 81 ~~l~~l~~~~~g~~~~Y~-h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dl 159 (290)
T PRK15453 81 QLFREYGETGTGKTRKYL-HTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNL 159 (290)
T ss_pred HHHHHHhcCCCcceeecc-ccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhH
Confidence 2222211100 0010 00100 0 00000 0112234556777887643 21 123333343 67778
Q ss_pred HHHHHHHHHHHhhCHH---HHHHHHhcCCccccC
Q psy8556 155 KLRTKFNIDINKYGIS---FLYDKLKLLDPVTAN 185 (298)
Q Consensus 155 ~lr~~l~~~~~~~g~~---~l~~~L~~~Dp~~a~ 185 (298)
++.+++.|+..++|+. .+.+.+++. |.+..
T Consensus 160 r~irRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~ 192 (290)
T PRK15453 160 EWIQKIHRDTSERGYSREAVMDTILRRM-PDYIN 192 (290)
T ss_pred HHHHHHHhhhHhhCCCHHHHHHHHHHhC-ChHhh
Confidence 8888999999999975 555666654 65544
No 31
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=4.8e-09 Score=100.05 Aligned_cols=146 Identities=15% Similarity=0.164 Sum_probs=81.3
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e 88 (298)
..++.|+++...++++++ .-.+|++++|+||||||||||++.|++... +++|+| +.|.++....|....
T Consensus 8 ~l~~~~~~~~~~l~~vsl-----~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~~~~~~r~ 77 (356)
T PRK11650 8 AVRKSYDGKTQVIKGIDL-----DVADGEFIVLVGPSGCGKSTLLRMVAGLER-----ITSGEIWIGGRVVNELEPADRD 77 (356)
T ss_pred eEEEEeCCCCEEEeeeeE-----EEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECCCCCHHHCC
Confidence 456777544455555555 224577999999999999999999999877 899999 678777543332222
Q ss_pred Hcccccc--cccccCcCccchHH---------HHHHHHHHhhHH--H--hhcCCceEEEchhH---HHHHHHHcc----C
Q psy8556 89 REITPHH--LIDIIEPTKSYSVI---------QFCEDALFSIKN--I--LKKKKLPLLVGGTM---LYFKALRDG----I 146 (298)
Q Consensus 89 ~~~v~~~--l~~~~~~~e~~s~~---------~f~~~~~~~i~~--i--~~~~~~~IlvGGt~---~y~~~ll~~----~ 146 (298)
...+++. ++...+..+++... +....+.+.++. + .....+--++||.. ...++++.. +
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llL 157 (356)
T PRK11650 78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFL 157 (356)
T ss_pred EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2223332 11112222222111 011111111111 0 01112234788876 466888865 3
Q ss_pred CCCCC--CCHHHHHHHHHHHH
Q psy8556 147 NKLPP--ANLKLRTKFNIDIN 165 (298)
Q Consensus 147 ~~~p~--~d~~lr~~l~~~~~ 165 (298)
.|.|. .|...+..+.+.+.
T Consensus 158 LDEP~s~LD~~~r~~l~~~l~ 178 (356)
T PRK11650 158 FDEPLSNLDAKLRVQMRLEIQ 178 (356)
T ss_pred EeCCcccCCHHHHHHHHHHHH
Confidence 45564 37777777766554
No 32
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.83 E-value=1.7e-08 Score=90.65 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=45.2
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|+.+...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 7 l~~~~~~~~~il~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~ 68 (243)
T TIGR02315 7 LSKVYPNGKQALKNINL-----NINPGEFVAIIGPSGAGKSTLLRCINRLVE-----PSSGSILLEGTDITK 68 (243)
T ss_pred eeeecCCCcceeecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCccEEEECCEEhhh
Confidence 45667633445666655 224577899999999999999999998776 789998 57766543
No 33
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.82 E-value=3.7e-09 Score=93.07 Aligned_cols=38 Identities=32% Similarity=0.435 Sum_probs=32.8
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCC---CeEeecCC
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIP---CEIISIDS 70 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~---~~iis~Ds 70 (298)
|+.++.+|+|+|+||||||||++.|++.++ ..+++.|.
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~ 42 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDS 42 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCc
Confidence 567899999999999999999999999984 34577776
No 34
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.82 E-value=1.6e-08 Score=86.91 Aligned_cols=59 Identities=25% Similarity=0.260 Sum_probs=42.7
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
+..|+. ...+.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 7 ~~~~~~-~~~l~~i~~-----~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 66 (178)
T cd03229 7 SKRYGQ-KTVLNDVSL-----NIEAGEIVALLGPSGSGKSTLLRCIAGLEE-----PDSGSILIDGEDLTD 66 (178)
T ss_pred EEEECC-eEEEeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc
Confidence 445543 234444443 335678999999999999999999998876 789998 57766643
No 35
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.81 E-value=2.7e-08 Score=90.10 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=75.9
Q ss_pred hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCCCCHHHHccccccccc
Q psy8556 20 QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNKPSIIEREITPHHLID 98 (298)
Q Consensus 20 ~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~kp~~~e~~~v~~~l~~ 98 (298)
..+.|+++ .-++|++++|+||||||||||++.+.+.+. +.+|.|+ .|.++...+ .....+.+|++.
T Consensus 18 ~vl~~i~l-----~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-----p~~G~i~~~g~~~~~~~-~~~~IgYVPQ~~-- 84 (254)
T COG1121 18 PVLEDISL-----SVEKGEITALIGPNGAGKSTLLKAILGLLK-----PSSGEIKIFGKPVRKRR-KRLRIGYVPQKS-- 84 (254)
T ss_pred eeeeccEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCcceEEEccccccccc-cCCeEEEcCccc--
Confidence 46777666 123456899999999999999999998776 7888884 554433221 123456677754
Q ss_pred ccCcCccchHHHHHHHH---------------HHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----CCC
Q psy8556 99 IIEPTKSYSVIQFCEDA---------------LFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----INK 148 (298)
Q Consensus 99 ~~~~~e~~s~~~f~~~~---------------~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----~~~ 148 (298)
.++..-..++.+++... .+.+.+.++ ...+--++||-. +..+||..+ +.|
T Consensus 85 ~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD 164 (254)
T COG1121 85 SVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD 164 (254)
T ss_pred ccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec
Confidence 12222223333333221 112222221 223335789976 677888866 446
Q ss_pred CCC--CCHHHHHHHHHH
Q psy8556 149 LPP--ANLKLRTKFNID 163 (298)
Q Consensus 149 ~p~--~d~~lr~~l~~~ 163 (298)
.|. .|+.-+..+-+.
T Consensus 165 EP~~gvD~~~~~~i~~l 181 (254)
T COG1121 165 EPFTGVDVAGQKEIYDL 181 (254)
T ss_pred CCcccCCHHHHHHHHHH
Confidence 664 466555554443
No 36
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.80 E-value=1.8e-08 Score=88.96 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=45.1
Q ss_pred hcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 7 l~~~~~~~~~~il~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 7 VSKAYPGGHQPALDNLNF-----HITKGEMVFLVGHSGAGKSTFLKLILGIEK-----PTRGKIRFNGQDLT 68 (216)
T ss_pred EEEEecCCCeeEEEeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEehh
Confidence 45667654 345666655 224577899999999999999999998876 789998 5776654
No 37
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.80 E-value=2.2e-08 Score=88.47 Aligned_cols=61 Identities=25% Similarity=0.151 Sum_probs=45.9
Q ss_pred hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|+++ ...+.++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++..
T Consensus 6 l~~~~~~~~~~~~il~~~s~-----~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~ 70 (218)
T cd03255 6 LSKTYGGGGEKVQALKGVSL-----SIEKGEFVAIVGPSGSGKSTLLNILGGLDR-----PTSGEVRVDGTDISK 70 (218)
T ss_pred eEEEecCCCcceeEEeeeEE-----EEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-----CCceeEEECCEehhh
Confidence 45677653 345666555 224577899999999999999999998876 789998 67776653
No 38
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.80 E-value=8.1e-09 Score=98.40 Aligned_cols=60 Identities=22% Similarity=0.261 Sum_probs=45.7
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.++.|++ ...++++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 8 l~~~~~~-~~~l~~isl-----~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~ 68 (353)
T PRK10851 8 IKKSFGR-TQVLNDISL-----DIPSGQMVALLGPSGSGKTTLLRIIAGLEH-----QTSGHIRFHGTDVSR 68 (353)
T ss_pred EEEEeCC-eEEEEEeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 4566764 345555555 223577999999999999999999998876 899999 67877754
No 39
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.79 E-value=3.5e-08 Score=86.91 Aligned_cols=61 Identities=13% Similarity=0.167 Sum_probs=44.9
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|+++...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 7 l~~~~~~~~~il~~is~-----~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~ 68 (214)
T TIGR02673 7 VSKAYPGGVAALHDVSL-----HIRKGEFLFLTGPSGAGKTTLLKLLYGALT-----PSRGQVRIAGEDVNR 68 (214)
T ss_pred eeEEeCCCceeecceeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccc
Confidence 34566533456666655 224567899999999999999999998876 789998 57766643
No 40
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.78 E-value=9.5e-09 Score=90.27 Aligned_cols=60 Identities=27% Similarity=0.299 Sum_probs=49.3
Q ss_pred chhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCC
Q psy8556 16 PQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPS 85 (298)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~ 85 (298)
-+|+.+++++++ ...+|++.+|+||||+|||||++.|++.+. +++|.+ |.|.+..+..|.
T Consensus 11 ~~Gr~ll~~vsl-----~~~pGev~ailGPNGAGKSTlLk~LsGel~-----p~~G~v~~~g~~l~~~~~~ 71 (259)
T COG4559 11 LAGRRLLDGVSL-----DLRPGEVLAILGPNGAGKSTLLKALSGELS-----PDSGEVTLNGVPLNSWPPE 71 (259)
T ss_pred eecceeccCcce-----eccCCcEEEEECCCCccHHHHHHHhhCccC-----CCCCeEeeCCcChhhCCHH
Confidence 678888888887 234566899999999999999999998887 899999 888887655543
No 41
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=3.8e-08 Score=84.14 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=42.1
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+..|+.. .++.+++. .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 7 ~~~~~~~-~~l~~~~~-----~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~ 65 (173)
T cd03230 7 SKRYGKK-TALDDISL-----TVEKGEIYGLLGPNGAGKTTLIKIILGLLK-----PDSGEIKVLGKDIK 65 (173)
T ss_pred EEEECCe-eeeeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcc
Confidence 4455432 34444444 234577899999999999999999998876 788998 5676654
No 42
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.77 E-value=3.6e-08 Score=93.97 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=81.7
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e 88 (298)
..++.|+. ...+.++++ .-++|++++|+||||||||||++.|++... +|+|+| +.|.++....|....
T Consensus 9 ~l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~~~~~r~ 77 (353)
T TIGR03265 9 NIRKRFGA-FTALKDISL-----SVKKGEFVCLLGPSGCGKTTLLRIIAGLER-----QTAGTIYQGGRDITRLPPQKRD 77 (353)
T ss_pred EEEEEeCC-eEEEEeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCCCCHHHCC
Confidence 34667764 334455444 224577999999999999999999998876 899999 677777543332222
Q ss_pred Hcccccc--cccccCcCccchHHHHH-----HHHHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----C
Q psy8556 89 REITPHH--LIDIIEPTKSYSVIQFC-----EDALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----I 146 (298)
Q Consensus 89 ~~~v~~~--l~~~~~~~e~~s~~~f~-----~~~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----~ 146 (298)
...++++ ++..++..+++...... ....+.+.++.+ ...+--++||.. ...++++.+ +
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llL 157 (353)
T TIGR03265 78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLL 157 (353)
T ss_pred EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2333332 11112222322211000 001111222221 122234788876 466888865 4
Q ss_pred CCCCC--CCHHHHHHHHHHHHh
Q psy8556 147 NKLPP--ANLKLRTKFNIDINK 166 (298)
Q Consensus 147 ~~~p~--~d~~lr~~l~~~~~~ 166 (298)
.|.|. .|...|+.+...+.+
T Consensus 158 LDEP~s~LD~~~r~~l~~~L~~ 179 (353)
T TIGR03265 158 LDEPLSALDARVREHLRTEIRQ 179 (353)
T ss_pred EcCCcccCCHHHHHHHHHHHHH
Confidence 46664 478888877766543
No 43
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.76 E-value=6.1e-09 Score=90.58 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=63.0
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchH-------
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSV------- 108 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~------- 108 (298)
+|.+|+|+||||||||||++.|....+. ++.-.+.+|.+|.+.|..++.||+++.-.+......
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~---------~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~ 73 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPD---------FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWA 73 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCc---------cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEE
Confidence 5789999999999999999999876531 233357789999999999999988765433221111
Q ss_pred ---HHHHHHHHHhhHHHhhcCCceEEE
Q psy8556 109 ---IQFCEDALFSIKNILKKKKLPLLV 132 (298)
Q Consensus 109 ---~~f~~~~~~~i~~i~~~~~~~Ilv 132 (298)
+.++....+.+...+..|+.+|+.
T Consensus 74 ~~~g~~YGt~~~~i~~~~~~g~~~i~d 100 (186)
T PRK14737 74 EVHDNYYGTPKAFIEDAFKEGRSAIMD 100 (186)
T ss_pred EECCeeecCcHHHHHHHHHcCCeEEEE
Confidence 223333455677888889998875
No 44
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.76 E-value=7.5e-08 Score=84.65 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=44.0
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+. ...+.++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 6 l~~~~~~-~~~l~~~s~-----~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 65 (213)
T cd03262 6 LHKSFGD-FHVLKGIDL-----TVKKGEVVVIIGPSGSGKSTLLRCINLLEE-----PDSGTIIIDGLKLT 65 (213)
T ss_pred EEEEECC-eEeecCceE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECC
Confidence 4556654 345555554 224678999999999999999999998876 789998 5776664
No 45
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=5e-08 Score=87.14 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=45.5
Q ss_pred hcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++.. ..+.++++ .-.+|++++|+||||||||||++.|++.++ +++|.| +.|.++..
T Consensus 7 l~~~~~~~~~~~~il~~~s~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 71 (233)
T cd03258 7 VSKVFGDTGGKVTALKDVSL-----SVPKGEIFGIIGRSGAGKSTLIRCINGLER-----PTSGSVLVDGTDLTL 71 (233)
T ss_pred ceEEccCCCCceeeeecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccc
Confidence 456676431 45555554 234577899999999999999999998876 788998 57777654
No 46
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=2.8e-08 Score=94.68 Aligned_cols=146 Identities=15% Similarity=0.139 Sum_probs=82.0
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e 88 (298)
..++.|++ ...+.++++ .-.+|++++|+||||||||||++.|++... +++|+| +.|.++....+....
T Consensus 11 ~l~~~~~~-~~~l~~isl-----~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~~~~~~~r~ 79 (351)
T PRK11432 11 NITKRFGS-NTVIDNLNL-----TIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-----PTEGQIFIDGEDVTHRSIQQRD 79 (351)
T ss_pred eEEEEECC-eEEEeeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECCCCCHHHCC
Confidence 35667754 334455444 224577999999999999999999998887 899999 677777543222222
Q ss_pred Hcccccc--cccccCcCccchHHHH-----HHHHHHhhHHHh--------hcCCceEEEchhH---HHHHHHHcc----C
Q psy8556 89 REITPHH--LIDIIEPTKSYSVIQF-----CEDALFSIKNIL--------KKKKLPLLVGGTM---LYFKALRDG----I 146 (298)
Q Consensus 89 ~~~v~~~--l~~~~~~~e~~s~~~f-----~~~~~~~i~~i~--------~~~~~~IlvGGt~---~y~~~ll~~----~ 146 (298)
...+++. ++..++..+++...-- .....+.+.++. ....+--++||.. ...++++.. +
T Consensus 80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL 159 (351)
T PRK11432 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLL 159 (351)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2233332 1111222233221100 001111112211 1223335788877 466888865 4
Q ss_pred CCCCCC--CHHHHHHHHHHHHh
Q psy8556 147 NKLPPA--NLKLRTKFNIDINK 166 (298)
Q Consensus 147 ~~~p~~--d~~lr~~l~~~~~~ 166 (298)
.|.|.+ |+..|..+.+.+.+
T Consensus 160 LDEP~s~LD~~~r~~l~~~l~~ 181 (351)
T PRK11432 160 FDEPLSNLDANLRRSMREKIRE 181 (351)
T ss_pred EcCCcccCCHHHHHHHHHHHHH
Confidence 466654 88888887766543
No 47
>PLN02348 phosphoribulokinase
Probab=98.75 E-value=3.7e-09 Score=101.06 Aligned_cols=146 Identities=11% Similarity=0.141 Sum_probs=74.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCC--------------------eEeecCCceEeccc-----cCCCCCCCHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPC--------------------EIISIDSALVYCDM-----DIGTNKPSIIER 89 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~--------------------~iis~Ds~qvy~g~-----~i~t~kp~~~e~ 89 (298)
+++.+|+|.|++|||||||++.|+..++. .+|+.|....+.-. .+....|...+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~df 126 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNF 126 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccccH
Confidence 56789999999999999999999998852 36777764332100 111112222222
Q ss_pred cccccccccccCcCc-cchHHHHHHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCC-----CCCCHHHHHHHHHH
Q psy8556 90 EITPHHLIDIIEPTK-SYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKL-----PPANLKLRTKFNID 163 (298)
Q Consensus 90 ~~v~~~l~~~~~~~e-~~s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~-----p~~d~~lr~~l~~~ 163 (298)
..+.+++..+..... .....+|........ +... +...||++|.+.+....+..+.++ ++.+..+.+++.|+
T Consensus 127 Dll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~-e~I~-p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RRI~RD 204 (395)
T PLN02348 127 DLMYEQVKALKEGKAVEKPIYNHVTGLLDPP-ELIE-PPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKIQRD 204 (395)
T ss_pred HHHHHHHHHHHCCCcEEeeccccCCCCcCCc-EEcC-CCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHHHHhh
Confidence 222222222111110 001111110000000 1112 234567788876554444443332 33445567888898
Q ss_pred HHhhCHH--HHHHHHhcCCcc
Q psy8556 164 INKYGIS--FLYDKLKLLDPV 182 (298)
Q Consensus 164 ~~~~g~~--~l~~~L~~~Dp~ 182 (298)
+.++|.. ...+.+..+.|.
T Consensus 205 ~~eRG~S~EeV~~~i~ar~pd 225 (395)
T PLN02348 205 MAERGHSLESIKASIEARKPD 225 (395)
T ss_pred HhhcCCCHHHHHHHHHhcCcc
Confidence 8877743 555556666665
No 48
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.75 E-value=3e-08 Score=87.17 Aligned_cols=61 Identities=23% Similarity=0.233 Sum_probs=45.1
Q ss_pred hhcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|+++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 4 ~l~~~~~~~~~~il~~vs~-----~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 66 (211)
T cd03225 4 NLSFSYPDGARPALDDISL-----TIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-----PTSGEVLVDGKDLT 66 (211)
T ss_pred eEEEecCCCCeeeecceEE-----EEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcc
Confidence 346667642 345566555 223577899999999999999999998876 789998 5776654
No 49
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=8.6e-08 Score=85.77 Aligned_cols=60 Identities=28% Similarity=0.243 Sum_probs=44.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++..
T Consensus 6 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~ 66 (235)
T cd03261 6 LTKSFGG-RTVLKGVDL-----DVRRGEILAIIGPSGSGKSTLLRLIVGLLR-----PDSGEVLIDGEDISG 66 (235)
T ss_pred EEEEECC-EEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc
Confidence 3556653 345566555 224577899999999999999999998876 788998 57766643
No 50
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=4.3e-08 Score=83.65 Aligned_cols=60 Identities=23% Similarity=0.260 Sum_probs=44.1
Q ss_pred hcccCchhh-hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQR-QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~-~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++++ ..+.++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 6 l~~~~~~~~~~~l~~i~~-----~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-----~~~G~i~~~g~~~~ 67 (171)
T cd03228 6 VSFSYPGRPKPVLKDVSL-----TIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-----PTSGEILIDGVDLR 67 (171)
T ss_pred EEEEcCCCCcccccceEE-----EEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhh
Confidence 355666542 45555554 224577899999999999999999999877 789998 5666553
No 51
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.74 E-value=5.2e-08 Score=83.89 Aligned_cols=124 Identities=20% Similarity=0.202 Sum_probs=75.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHcccc--cccccccCcCcc------
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREITP--HHLIDIIEPTKS------ 105 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~v~--~~l~~~~~~~e~------ 105 (298)
..+++++|+||||||||||++.+|+..- +.+|.| ..|.+.+...|...-...+. +.++..+++.++
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~-----P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~ 97 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFET-----PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS 97 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccC-----CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC
Confidence 4578999999999999999999998876 889998 58888876666544333332 233333433332
Q ss_pred ----chHHHHHH--HHHH--hhHHHhhcCCceEEEchhH---HHHHHHHcc----CCCCC--CCCHHHHHHHHHHH
Q psy8556 106 ----YSVIQFCE--DALF--SIKNILKKKKLPLLVGGTM---LYFKALRDG----INKLP--PANLKLRTKFNIDI 164 (298)
Q Consensus 106 ----~s~~~f~~--~~~~--~i~~i~~~~~~~IlvGGt~---~y~~~ll~~----~~~~p--~~d~~lr~~l~~~~ 164 (298)
+++.+-.+ .+.. -+....+ --+.-++||-. -..+++++. +.|.| .-|+.+|..+...+
T Consensus 98 P~LkL~a~~r~~v~~aa~~vGl~~~~~-RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv 172 (231)
T COG3840 98 PGLKLNAEQREKVEAAAAQVGLAGFLK-RLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALV 172 (231)
T ss_pred cccccCHHHHHHHHHHHHHhChhhHhh-hCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHH
Confidence 22222111 1111 1111111 12336888866 467888876 33555 34898988876544
No 52
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.74 E-value=4.1e-08 Score=93.14 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=46.1
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
..++.|++. ..++++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 46 nl~k~y~~~-~~l~~is~-----~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-----p~~G~i~i~G~~~~~ 107 (340)
T PRK13536 46 GVSKSYGDK-AVVNGLSF-----TVASGECFGLLGPNGAGKSTIARMILGMTS-----PDAGKITVLGVPVPA 107 (340)
T ss_pred EEEEEECCE-EEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCceEEEECCEECCc
Confidence 356667542 45556555 224577999999999999999999998876 899999 58877653
No 53
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=5.4e-08 Score=86.21 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=43.7
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.++.|++ ..+++++++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++.
T Consensus 6 ~~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~ 65 (220)
T cd03265 6 LVKKYGD-FEAVRGVSF-----RVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-----PTSGRATVAGHDVV 65 (220)
T ss_pred EEEEECC-EEeeeceeE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEecC
Confidence 4556654 345555554 224577899999999999999999998776 889998 5676654
No 54
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.73 E-value=1e-08 Score=102.34 Aligned_cols=145 Identities=16% Similarity=0.256 Sum_probs=76.5
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCC-CeEeecCCceEec-cccCCCCCCCHHHHcccccccccccCcCc-cchHHHHH
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIP-CEIISIDSALVYC-DMDIGTNKPSIIEREITPHHLIDIIEPTK-SYSVIQFC 112 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~-~~iis~Ds~qvy~-g~~i~t~kp~~~e~~~v~~~l~~~~~~~e-~~s~~~f~ 112 (298)
...+|+|.||||||||||++.|++.++ ..+|+.|...-.. ..+.....|...+...+.+++..+..... .+...+|.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~ 143 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFK 143 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCccccc
Confidence 457999999999999999999999885 4678888732110 01111112222222222222222111111 12222332
Q ss_pred HHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCC-----CCCCHHHHHHHHHHHHhhCHH---HHHHHHhcCCc
Q psy8556 113 EDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKL-----PPANLKLRTKFNIDINKYGIS---FLYDKLKLLDP 181 (298)
Q Consensus 113 ~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~-----p~~d~~lr~~l~~~~~~~g~~---~l~~~L~~~Dp 181 (298)
......-..+......+||++|...+...+. ++.|+ .+.+..+.+|+.++..++|.. .+.++...+-|
T Consensus 144 t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr-~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP 219 (656)
T PLN02318 144 SSSRVGYRTLEVPSSRIVIIEGIYALSEKLR-PLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYP 219 (656)
T ss_pred cCcccCCceeecCCCcEEEEechhhccHhHH-hhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcc
Confidence 2111000011122344678889888765443 33343 456788889999998888754 34444444444
No 55
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.73 E-value=2.6e-08 Score=88.13 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=46.3
Q ss_pred hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
.+..|+++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.+.
T Consensus 7 v~~~~~~~~~~~~~l~~isl-----~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~ 72 (221)
T TIGR02211 7 LGKRYQEGKLDTRVLKGVSL-----SIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-----PTSGEVLFNGQSLSKL 72 (221)
T ss_pred eeEEccCCCcceEeEeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhhc
Confidence 46677653 245555554 224577999999999999999999998876 889999 577766543
No 56
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.73 E-value=9.8e-08 Score=88.93 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=40.2
Q ss_pred hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 20 QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 20 ~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 7 ~~l~~vs~-----~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 58 (302)
T TIGR01188 7 KAVDGVNF-----KVREGEVFGFLGPNGAGKTTTIRMLTTLLR-----PTSGTARVAGYDVV 58 (302)
T ss_pred eEEeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcc
Confidence 44555554 224577999999999999999999998876 899999 5777664
No 57
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.72 E-value=6.6e-08 Score=82.67 Aligned_cols=60 Identities=25% Similarity=0.248 Sum_probs=43.8
Q ss_pred hcccCchhh-hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQR-QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~-~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++++ ..+.+++. .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 6 l~~~~~~~~~~~l~~~~~-----~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~ 67 (173)
T cd03246 6 VSFRYPGAEPPVLRNVSF-----SIEPGESLAIIGPSGSGKSTLARLILGLLR-----PTSGRVRLDGADIS 67 (173)
T ss_pred EEEEcCCCCCcceeeeEE-----EECCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEEcc
Confidence 355666432 34555444 224577899999999999999999998876 889998 5666654
No 58
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.72 E-value=3.7e-09 Score=87.41 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=58.9
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHH--------
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQ-------- 110 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~-------- 110 (298)
+++|+||||||||||++.|++.++... ..-...+|.+|...+..+..|++++...+...+..+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~--------~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~ 72 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF--------GFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFH 72 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc--------eecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEc
Confidence 478999999999999999998875221 1123346778887788888888877544332222222
Q ss_pred --HHHHHHHhhHHHhhcCCceEEEc
Q psy8556 111 --FCEDALFSIKNILKKKKLPLLVG 133 (298)
Q Consensus 111 --f~~~~~~~i~~i~~~~~~~IlvG 133 (298)
++......+.++...|++||+..
T Consensus 73 ~~~yg~~~~~i~~~~~~g~~~il~~ 97 (137)
T cd00071 73 GNYYGTSKAAVEEALAEGKIVILEI 97 (137)
T ss_pred CEEecCcHHHHHHHHhCCCeEEEEe
Confidence 22234566778888999888754
No 59
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.72 E-value=1.1e-08 Score=94.79 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=62.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCe-EeecCCce------------------EeccccCCCCCCCHHHHcccccc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCE-IISIDSAL------------------VYCDMDIGTNKPSIIEREITPHH 95 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~-iis~Ds~q------------------vy~g~~i~t~kp~~~e~~~v~~~ 95 (298)
++|.+|+|.|+|||||||++..||..++.. +|+.|+.+ .|..+.+.++.|+..+ |+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~-----~~ 164 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEP-----PV 164 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCch-----hh
Confidence 357899999999999999999999999875 78888766 5666666555555433 45
Q ss_pred cccccCcCccchHHHHHHHHHHhhHHHhhcCCceEEEchhHH
Q psy8556 96 LIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTML 137 (298)
Q Consensus 96 l~~~~~~~e~~s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~~ 137 (298)
+.++..+.+.++.+ +...+.....+|.. ++++|.++
T Consensus 165 l~g~~~~~~~v~~g-----i~~~I~~~~~~g~s-~IiEGvhl 200 (301)
T PRK04220 165 IYGFERHVEPVSVG-----VEAVIERALKEGIS-VIIEGVHI 200 (301)
T ss_pred hhhHHHHHHHHHHH-----HHHHHHHHHHhCCc-EEEecCCC
Confidence 55555444443332 34456666666654 55566665
No 60
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.72 E-value=1.4e-08 Score=86.28 Aligned_cols=58 Identities=24% Similarity=0.335 Sum_probs=45.9
Q ss_pred hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH
Q psy8556 19 RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI 86 (298)
Q Consensus 19 ~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~ 86 (298)
.-+++++++ .-.+|+.++|+||||||||||.+.+|.+ ||+|+|.+ |+|.++.+.+|..
T Consensus 16 a~il~~isl-----~v~~Ge~iaitGPSG~GKStllk~va~L-----isp~~G~l~f~Ge~vs~~~pea 74 (223)
T COG4619 16 AKILNNISL-----SVRAGEFIAITGPSGCGKSTLLKIVASL-----ISPTSGTLLFEGEDVSTLKPEA 74 (223)
T ss_pred Ceeecceee-----eecCCceEEEeCCCCccHHHHHHHHHhc-----cCCCCceEEEcCccccccChHH
Confidence 355666665 2345678999999999999999999754 55999999 6999998877654
No 61
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.71 E-value=7.8e-08 Score=85.75 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=44.6
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 6 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 66 (232)
T cd03218 6 LSKRYGK-RKVVNGVSL-----SVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-----PDSGKILLDGQDITK 66 (232)
T ss_pred EEEEeCC-EEeecccee-----EecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEeccc
Confidence 4566754 345556554 224577899999999999999999998876 889998 57766543
No 62
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.71 E-value=4.3e-08 Score=94.00 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=45.4
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
..++.|++ ...++++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 8 ~l~~~~~~-~~vl~~vsl-----~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-----p~~G~I~~~g~~i~~ 69 (369)
T PRK11000 8 NVTKAYGD-VVISKDINL-----DIHEGEFVVFVGPSGCGKSTLLRMIAGLED-----ITSGDLFIGEKRMND 69 (369)
T ss_pred EEEEEeCC-eEEEeeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 34566754 345555555 223577899999999999999999998876 889998 57777653
No 63
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=9.3e-08 Score=85.99 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=44.2
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++....+.++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 6 l~~~~~~~~~~l~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 66 (242)
T cd03295 6 VTKRYGGGKKAVNNLNL-----EIAKGEFLVLIGPSGSGKTTTMKMINRLIE-----PTSGEIFIDGEDIR 66 (242)
T ss_pred EEEEeCCcceEeeeeEE-----EECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCeEcC
Confidence 45566642334555544 224677899999999999999999998876 788998 6776654
No 64
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=3.2e-08 Score=88.47 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=46.0
Q ss_pred hhcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 10 RDTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 10 ~~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
..+..|+.+ ...+.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 10 ~l~~~~~~~~~~~~il~~isl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~~ 75 (233)
T PRK11629 10 NLCKRYQEGSVQTDVLHNVSF-----SIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-----PTSGDVIFNGQPMSK 75 (233)
T ss_pred eEEEEcCCCCcceeeEEeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc
Confidence 346677653 245556555 224577899999999999999999998876 889999 57777653
No 65
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.69 E-value=9.9e-08 Score=83.97 Aligned_cols=58 Identities=19% Similarity=0.168 Sum_probs=42.9
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+..|+. ..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 7 ~~~~~~-~~~l~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~v~~~g~~~~ 65 (213)
T cd03301 7 TKRFGN-VTALDDLNL-----DIADGEFVVLLGPSGCGKTTTLRMIAGLEE-----PTSGRIYIGGRDVT 65 (213)
T ss_pred EEEECC-eeeeeceEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence 445544 345555554 224577899999999999999999998876 788988 5776664
No 66
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.68 E-value=1.9e-08 Score=88.58 Aligned_cols=38 Identities=37% Similarity=0.327 Sum_probs=32.1
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCC---CeEeecCC
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIP---CEIISIDS 70 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~---~~iis~Ds 70 (298)
-+++|.+|+|+||||||||||++.|++.++ ..+++.|.
T Consensus 2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~ 42 (207)
T TIGR00235 2 DKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDN 42 (207)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccc
Confidence 357889999999999999999999999876 35666665
No 67
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=4.8e-08 Score=86.53 Aligned_cols=60 Identities=20% Similarity=0.110 Sum_probs=43.9
Q ss_pred hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++. ..++.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 6 l~~~~~~~~~~~~il~~vs~-----~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 69 (220)
T cd03293 6 VSKTYGGGGGAVTALEDISL-----SVEEGEFVALVGPSGCGKSTLLRIIAGLER-----PTSGEVLVDGEPVT 69 (220)
T ss_pred EEEEcCCCCcceEEEeceeE-----EEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECc
Confidence 45667642 345566555 224567899999999999999999998776 788888 5676654
No 68
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=1.1e-08 Score=91.17 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=51.1
Q ss_pred hhhcccCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 9 DRDTETDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
...+++||.+..-+.++++ ++. |++++|+||||||||||+++|.+..+ +.+|+| ..|.++...
T Consensus 7 ~nl~k~yp~~~~aL~~Vnl~I~~------GE~VaiIG~SGaGKSTLLR~lngl~d-----~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 7 KNLSKTYPGGHQALKDVNLEINQ------GEMVAIIGPSGAGKSTLLRSLNGLVD-----PTSGEILFNGVQITKL 71 (258)
T ss_pred eeeeeecCCCceeeeeEeEEeCC------CcEEEEECCCCCcHHHHHHHHhcccC-----CCcceEEecccchhcc
Confidence 3568999999998888887 444 55799999999999999999988655 888888 577776643
No 69
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.68 E-value=5.2e-08 Score=92.54 Aligned_cols=64 Identities=17% Similarity=0.058 Sum_probs=48.0
Q ss_pred hhcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCC
Q psy8556 10 RDTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNK 83 (298)
Q Consensus 10 ~~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~k 83 (298)
..++.|+++ ...+.++++ .-.+|++++|+||||||||||+++|++... +++|+| +.|.++....
T Consensus 6 ~lsk~y~~~~~~~~~L~~vsl-----~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-----p~~G~I~i~G~~i~~~~ 73 (343)
T TIGR02314 6 NITKVFHQGTKTIQALNNVSL-----HVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTSGSVIVDGQDLTTLS 73 (343)
T ss_pred EEEEEECCCCcceEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcCC
Confidence 356778642 245666555 224577899999999999999999998776 899999 6888876443
No 70
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.68 E-value=5.1e-08 Score=93.64 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=78.3
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHH
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIER 89 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~ 89 (298)
.++.|++ ...+.++++ .-.+|++++|+||||||||||+++|++... +++|+| +.|.++....|.....
T Consensus 20 l~~~~~~-~~~l~~vsl-----~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 20 ISKSFDG-KEVISNLDL-----TINNGEFLTLLGPSGCGKTTVLRLIAGFET-----PDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred EEEEECC-eEEEeeeEE-----EEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCCCCHHHCCE
Confidence 3455643 233444443 225678999999999999999999998876 899999 6887775433322222
Q ss_pred cccccc--cccccCcCccchHHHHH-----HHHHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----CC
Q psy8556 90 EITPHH--LIDIIEPTKSYSVIQFC-----EDALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----IN 147 (298)
Q Consensus 90 ~~v~~~--l~~~~~~~e~~s~~~f~-----~~~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----~~ 147 (298)
..+++. ++..++..+++...-.. ....+.+.++.+ ...+--++||.. ...++++.. +.
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLL 168 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL 168 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 222222 11112222222211000 000111122111 112234788876 467888865 34
Q ss_pred CCCC--CCHHHHHHHHHHHH
Q psy8556 148 KLPP--ANLKLRTKFNIDIN 165 (298)
Q Consensus 148 ~~p~--~d~~lr~~l~~~~~ 165 (298)
|.|. .|...|..+...+.
T Consensus 169 DEP~s~LD~~~r~~l~~~L~ 188 (375)
T PRK09452 169 DESLSALDYKLRKQMQNELK 188 (375)
T ss_pred eCCCCcCCHHHHHHHHHHHH
Confidence 5564 37887877766654
No 71
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.68 E-value=1.2e-07 Score=85.50 Aligned_cols=145 Identities=17% Similarity=0.238 Sum_probs=81.9
Q ss_pred hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCCCCHH
Q psy8556 9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNKPSII 87 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~kp~~~ 87 (298)
..++|.|. +...++++++ .-++|++++++|||||||||+++++.+++. +++|.|+ .|.++.+..+ .
T Consensus 5 ~nvsk~y~-~~~av~~v~l-----~I~~gef~vliGpSGsGKTTtLkMINrLie-----pt~G~I~i~g~~i~~~d~--~ 71 (309)
T COG1125 5 ENVSKRYG-NKKAVDDVNL-----TIEEGEFLVLIGPSGSGKTTTLKMINRLIE-----PTSGEILIDGEDISDLDP--V 71 (309)
T ss_pred eeeehhcC-CceeeeeeeE-----EecCCeEEEEECCCCCcHHHHHHHHhcccC-----CCCceEEECCeecccCCH--H
Confidence 35678887 3344555554 224577899999999999999999977666 9999995 8888775433 2
Q ss_pred HHccccccccc------ccCcCccchH----HHHHHH-HHHhhHHHhh---------cCCce-EEEchhH---HHHHHHH
Q psy8556 88 EREITPHHLID------IIEPTKSYSV----IQFCED-ALFSIKNILK---------KKKLP-LLVGGTM---LYFKALR 143 (298)
Q Consensus 88 e~~~v~~~l~~------~~~~~e~~s~----~~f~~~-~~~~i~~i~~---------~~~~~-IlvGGt~---~y~~~ll 143 (298)
+++.--.+.+. .+...++... ..|.+. ..+.+.++.. ..+.| =++||-. -.++|+.
T Consensus 72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 22221111111 1222222211 111111 1112222221 12334 4788876 4678888
Q ss_pred cc----CCCCC--CCCHHHHHHHHHHHHh
Q psy8556 144 DG----INKLP--PANLKLRTKFNIDINK 166 (298)
Q Consensus 144 ~~----~~~~p--~~d~~lr~~l~~~~~~ 166 (298)
.+ +.|.| ..|+-.|..+.+++.+
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~ 180 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKE 180 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHH
Confidence 65 34556 4577777777666543
No 72
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.7e-08 Score=86.27 Aligned_cols=78 Identities=23% Similarity=0.207 Sum_probs=57.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHcccccccccccCcC--ccchHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREITPHHLIDIIEPT--KSYSVIQF 111 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~v~~~l~~~~~~~--e~~s~~~f 111 (298)
++|++.+|+||||||||||+..|++.-+.++ .+|+| |+|.+|....|+.....++.- .+-.|. +-.+..+|
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~V---t~G~I~~~GedI~~l~~~ERAr~GifL---afQ~P~ei~GV~~~~f 101 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV---TEGEILFDGEDILELSPDERARAGIFL---AFQYPVEIPGVTNSDF 101 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCceE---ecceEEECCcccccCCHhHHHhcCCEE---eecCCccCCCeeHHHH
Confidence 5678999999999999999999999876555 46777 899999977776655555432 222332 35677888
Q ss_pred HHHHHHh
Q psy8556 112 CEDALFS 118 (298)
Q Consensus 112 ~~~~~~~ 118 (298)
.+.+...
T Consensus 102 Lr~a~n~ 108 (251)
T COG0396 102 LRAAMNA 108 (251)
T ss_pred HHHHHHh
Confidence 8766554
No 73
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.67 E-value=1.9e-07 Score=83.52 Aligned_cols=60 Identities=20% Similarity=0.155 Sum_probs=43.6
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++..
T Consensus 6 l~~~~~~-~~~l~~vsl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~ 66 (236)
T cd03219 6 LTKRFGG-LVALDDVSF-----SVRPGEIHGLIGPNGAGKTTLFNLISGFLR-----PTSGSVLFDGEDITG 66 (236)
T ss_pred eEEEECC-EEEecCceE-----EecCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEECCC
Confidence 3455653 234555444 224677899999999999999999998776 788998 57766653
No 74
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.67 E-value=1.9e-07 Score=82.44 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=44.5
Q ss_pred hcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++.. .++.++++ .-.+|++++|+||||||||||++.|++.++ +++|.| +.|.++.
T Consensus 7 v~~~~~~~~~~~~il~~~sl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 70 (218)
T cd03266 7 LTKRFRDVKKTVQAVDGVSF-----TVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-----PDAGFATVDGFDVV 70 (218)
T ss_pred EEEecCCCCccceeecceEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEEcc
Confidence 456676532 35555554 224577899999999999999999998776 788988 5776664
No 75
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.67 E-value=7.5e-08 Score=92.10 Aligned_cols=145 Identities=14% Similarity=0.161 Sum_probs=80.2
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC--ceE-eccccCCCCCCCH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS--ALV-YCDMDIGTNKPSI 86 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds--~qv-y~g~~i~t~kp~~ 86 (298)
..++.|+. ...++++++ .-.+|++++|+||||||||||++.|++... +++ |+| +.|.++....+..
T Consensus 10 ~l~~~~~~-~~~l~~vsl-----~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~~~G~i~~~g~~~~~~~~~~ 78 (362)
T TIGR03258 10 HLRVAYGA-NTVLDDLSL-----EIEAGELLALIGKSGCGKTTLLRAIAGFVK-----AAGLTGRIAIADRDLTHAPPHK 78 (362)
T ss_pred EEEEEECC-eEEEeeeEE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCEEEEECCEECCCCCHHH
Confidence 34667764 345555555 123567899999999999999999998876 888 999 6777764322211
Q ss_pred HHHcccccc--cccccCcCccchHHHHH-----HHHHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc---
Q psy8556 87 IEREITPHH--LIDIIEPTKSYSVIQFC-----EDALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG--- 145 (298)
Q Consensus 87 ~e~~~v~~~--l~~~~~~~e~~s~~~f~-----~~~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~--- 145 (298)
.....+.+. ++..++..+++...-.. ....+.+.++.+ ...+--++||.. ...++++..
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l 158 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 112222222 11112222222211000 001111222221 112234788876 467888865
Q ss_pred -CCCCCC--CCHHHHHHHHHHHH
Q psy8556 146 -INKLPP--ANLKLRTKFNIDIN 165 (298)
Q Consensus 146 -~~~~p~--~d~~lr~~l~~~~~ 165 (298)
+.|.|. .|+..+..+.+.+.
T Consensus 159 lLLDEP~s~LD~~~r~~l~~~l~ 181 (362)
T TIGR03258 159 LLLDEPLSALDANIRANMREEIA 181 (362)
T ss_pred EEEcCccccCCHHHHHHHHHHHH
Confidence 446664 47888887776654
No 76
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.66 E-value=7.9e-08 Score=89.84 Aligned_cols=62 Identities=13% Similarity=0.219 Sum_probs=46.8
Q ss_pred hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
...++.|++ ...++++++ .-++|++++|+||||||||||++.|++.+. +++|.| +.|.++..
T Consensus 11 ~~l~k~~~~-~~~l~~vsl-----~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-----p~~G~v~i~G~~~~~ 73 (306)
T PRK13537 11 RNVEKRYGD-KLVVDGLSF-----HVQRGECFGLLGPNGAGKTTTLRMLLGLTH-----PDAGSISLCGEPVPS 73 (306)
T ss_pred EeEEEEECC-eEEEecceE-----EEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEeccc
Confidence 345677864 345556555 224577999999999999999999998876 899999 57777653
No 77
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.66 E-value=9.7e-09 Score=93.67 Aligned_cols=146 Identities=18% Similarity=0.155 Sum_probs=79.1
Q ss_pred EEEEECCCchhHHHHHHHHHhhCC-----CeEeecCCceEeccccC--------------CCCCCCHHHHcccccccccc
Q psy8556 39 KVAILGPTASGKSSVALKISEYIP-----CEIISIDSALVYCDMDI--------------GTNKPSIIEREITPHHLIDI 99 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds~qvy~g~~i--------------~t~kp~~~e~~~v~~~l~~~ 99 (298)
+|+|+|+|||||||+++.|+..++ ..+|+.|+..-|..... ..-.|.+.+...+..++...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999999987664 46788998433321110 00014443333333333322
Q ss_pred cCcC----ccc--hH---HHHHHHHHH-hhHHHhhcCCceEEEchhH-HHH--HHHHccCCCC-----CCCCHHHHHHHH
Q psy8556 100 IEPT----KSY--SV---IQFCEDALF-SIKNILKKKKLPLLVGGTM-LYF--KALRDGINKL-----PPANLKLRTKFN 161 (298)
Q Consensus 100 ~~~~----e~~--s~---~~f~~~~~~-~i~~i~~~~~~~IlvGGt~-~y~--~~ll~~~~~~-----p~~d~~lr~~l~ 161 (298)
.... ..| +. ..+...... .-.+....+...|+++|.+ +|. ..-+..+.|+ |+.+.++.+++.
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI~ 160 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKIH 160 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHHH
Confidence 2211 011 10 000000000 0001122456667888876 222 1233333333 677788888999
Q ss_pred HHHHhhCHH---HHHHHHhcCCccccC
Q psy8556 162 IDINKYGIS---FLYDKLKLLDPVTAN 185 (298)
Q Consensus 162 ~~~~~~g~~---~l~~~L~~~Dp~~a~ 185 (298)
|+..++|++ .+.+.++++ |.+..
T Consensus 161 RD~~ERGrs~EsVi~qilrrm-pdy~~ 186 (277)
T cd02029 161 RDTAERGYSAEAVMDTILRRM-PDYIN 186 (277)
T ss_pred hhhHhhCCCHHHHHHHHHHhC-chHHh
Confidence 999999976 666777776 66655
No 78
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.66 E-value=8.3e-08 Score=81.42 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=44.2
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|++. ..+.++++ .-++|++++|+||||||||||++.|++..+ +++|+| +.|.++.
T Consensus 5 ~l~~~~~~~-~vl~~i~~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~ 65 (163)
T cd03216 5 GITKRFGGV-KALDGVSL-----SVRRGEVHALLGENGAGKSTLMKILSGLYK-----PDSGEILVDGKEVS 65 (163)
T ss_pred EEEEEECCe-EEEeeeEE-----EEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECC
Confidence 345667643 34555444 235677999999999999999999998876 889998 4666554
No 79
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.65 E-value=2.1e-07 Score=81.60 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=43.7
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 6 l~~~~~~-~~~l~~~~~-----~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 65 (208)
T cd03268 6 LTKTYGK-KRVLDDISL-----HVKKGEIYGFLGPNGAGKTTTMKIILGLIK-----PDSGEITFDGKSYQ 65 (208)
T ss_pred EEEEECC-eEeEeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCCccc
Confidence 4556643 345555554 224577899999999999999999998776 889998 5676654
No 80
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.65 E-value=1.2e-07 Score=88.35 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=44.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.++.|++ ...+.++++ .-++|++++|+||||||||||++.|++.+. +++|.| +.|.++.
T Consensus 10 l~~~~~~-~~~l~~vsl-----~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 69 (303)
T TIGR01288 10 VSKSYGD-KVVVNDLSF-----TIARGECFGLLGPNGAGKSTIARMLLGMIS-----PDRGKITVLGEPVP 69 (303)
T ss_pred EEEEeCC-eEEEcceeE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECc
Confidence 4566754 345566555 224577899999999999999999998776 889998 5776664
No 81
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=1.2e-07 Score=89.93 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=46.4
Q ss_pred hhcccCch---hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 10 RDTETDPQ---QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 10 ~~~~~~~~---~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
..++.|+. ....+.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 6 ~l~~~y~~~~~~~~il~~vsl-----~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-----p~~G~I~~~g~~i~~ 71 (343)
T PRK11153 6 NISKVFPQGGRTIHALNNVSL-----HIPAGEIFGVIGASGAGKSTLIRCINLLER-----PTSGRVLVDGQDLTA 71 (343)
T ss_pred eEEEEeCCCCCceEEEEeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCc
Confidence 34667762 2345566555 224577899999999999999999998876 889999 67877654
No 82
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=1.5e-07 Score=86.55 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=46.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|+++...+.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 7 l~~~~~~~~~~l~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 68 (274)
T PRK13644 7 VSYSYPDGTPALENINL-----VIKKGEYIGIIGKNGSGKSTLALHLNGLLR-----PQKGKVLVSGIDTGD 68 (274)
T ss_pred EEEEcCCCCceeeeeEE-----EEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEECCc
Confidence 46677654446666655 224577899999999999999999998876 889999 57776653
No 83
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.65 E-value=1.3e-07 Score=82.41 Aligned_cols=60 Identities=22% Similarity=0.117 Sum_probs=45.0
Q ss_pred hcccCch-----hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhC--CCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQ-----QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYI--PCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~-----~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l--~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+. +...+.+++. .-.+|++++|+||||||||||++.|++.+ + +++|+| +.|.++.
T Consensus 9 ls~~~~~~~~~~~~~~l~~~~~-----~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-----~~~G~i~~~g~~~~ 76 (194)
T cd03213 9 LTVTVKSSPSKSGKQLLKNVSG-----KAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-----GVSGEVLINGRPLD 76 (194)
T ss_pred eEEEEecCCCcccccceecceE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEeCc
Confidence 4566764 2456666555 22457789999999999999999999887 5 788998 6776654
No 84
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=1.9e-07 Score=82.00 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=42.5
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++
T Consensus 6 l~~~~~~-~~~l~~v~~-----~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~ 64 (210)
T cd03269 6 VTKRFGR-VTALDDISF-----SVEKGEIFGLLGPNGAGKTTTIRMILGIIL-----PDSGEVLFDGKPL 64 (210)
T ss_pred EEEEECC-EEEEeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCCch
Confidence 3455653 345555544 224577899999999999999999998876 789998 566555
No 85
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.64 E-value=8.6e-08 Score=88.37 Aligned_cols=55 Identities=24% Similarity=0.250 Sum_probs=40.7
Q ss_pred hcccCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556 11 DTETDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM 77 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~ 77 (298)
+++.|+.-..+ +|++. ++ .|+++++.||||||||||+++||++.. +|+|.| +.|.
T Consensus 8 ~~~~~~~~~a~-~di~l~i~------~Ge~vaLlGpSGaGKsTlLRiIAGLe~-----p~~G~I~~~~~ 64 (345)
T COG1118 8 VKKRFGAFGAL-DDISLDIK------SGELVALLGPSGAGKSTLLRIIAGLET-----PDAGRIRLNGR 64 (345)
T ss_pred hhhhccccccc-ccceeeec------CCcEEEEECCCCCcHHHHHHHHhCcCC-----CCCceEEECCE
Confidence 34444444332 35555 44 467899999999999999999999877 999999 4555
No 86
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=2.1e-07 Score=81.79 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=35.7
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~ 63 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFET-----PQSGRVLINGVDVT 63 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcC
Confidence 35688999999999999999999998876 889998 5676654
No 87
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.64 E-value=3.2e-08 Score=98.79 Aligned_cols=42 Identities=26% Similarity=0.383 Sum_probs=37.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|+.++|+||||||||||++.|++.+. +++|.| +.|.++..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~i~g~~i~~ 401 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD-----PLQGEVTLDGVSVSS 401 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhh
Confidence 6788999999999999999999999887 899999 57777763
No 88
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.64 E-value=3e-07 Score=82.54 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=44.8
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ...+.+.++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++..
T Consensus 8 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~ 68 (242)
T TIGR03411 8 LSVSFDG-FKALNDLSL-----YVDPGELRVIIGPNGAGKTTMMDVITGKTR-----PDEGSVLFGGTDLTG 68 (242)
T ss_pred eEEEcCC-eEEeeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCeecCC
Confidence 4566764 345555554 224678999999999999999999998876 889998 57766643
No 89
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.64 E-value=2.6e-07 Score=82.91 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=43.1
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++.
T Consensus 8 ~~~~~~-~~il~~~s~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 66 (240)
T PRK09493 8 SKHFGP-TQVLHNIDL-----NIDQGEVVVIIGPSGSGKSTLLRCINKLEE-----ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEECC-eEEeeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence 455653 344555554 224678999999999999999999998775 889998 5776654
No 90
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.63 E-value=2.6e-07 Score=88.43 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=40.9
Q ss_pred hhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 21 LTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 21 ~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+.++++ .-++|++++|+||||||||||+++|++... +++|+| +.|.++..
T Consensus 8 ~l~~vs~-----~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-----p~~G~I~i~G~~i~~ 59 (363)
T TIGR01186 8 GVNDADL-----AIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-----PTAGQIFIDGENIMK 59 (363)
T ss_pred eEEeeEE-----EEcCCCEEEEECCCCChHHHHHHHHhCCCC-----CCceEEEECCEECCc
Confidence 4455554 224678999999999999999999998877 899999 58877764
No 91
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.63 E-value=1.6e-08 Score=90.41 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=58.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHcccccccccccCcCccchHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCE 113 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~ 113 (298)
.+|++++|+|||||||||+.+.|.+.+. +|+|.| |+|.+|+..+|...-..++...| +...+...+|+.+...
T Consensus 28 ~~Gei~~LIGPNGAGKTTlfNlitG~~~-----P~~G~v~~~G~~it~l~p~~iar~Gi~RTF-Q~~rlF~~lTVlENv~ 101 (250)
T COG0411 28 RPGEIVGLIGPNGAGKTTLFNLITGFYK-----PSSGTVIFRGRDITGLPPHRIARLGIARTF-QITRLFPGLTVLENVA 101 (250)
T ss_pred cCCeEEEEECCCCCCceeeeeeeccccc-----CCCceEEECCcccCCCCHHHHHhccceeec-ccccccCCCcHHHHHH
Confidence 5688999999999999999999988887 999999 79999987777766666666543 3345666777766654
No 92
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=1.5e-07 Score=82.52 Aligned_cols=140 Identities=14% Similarity=-0.006 Sum_probs=75.2
Q ss_pred hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH
Q psy8556 11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI 86 (298)
Q Consensus 11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~ 86 (298)
.+..||.+ ...+.++++ .-.+|++++|+||||||||||++.|++.+... .+++|+| +.|.++.... .
T Consensus 9 ~~~~~~~~~~~~~il~~~s~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~~~~G~i~i~g~~~~~~~--~ 79 (202)
T cd03233 9 ISFTTGKGRSKIPILKDFSG-----VVKPGEMVLVLGRPGSGCSTLLKALANRTEGN--VSVEGDIHYNGIPYKEFA--E 79 (202)
T ss_pred cEEEeccCCCCceeeeeEEE-----EECCCcEEEEECCCCCCHHHHHHHhcccCCCC--CCcceEEEECCEECccch--h
Confidence 46677653 344555544 22457789999999999999999998875411 1578888 5776665321 1
Q ss_pred HHHcccccccccccCcCccchHHHHHHHHHHhhHHHhhcCCceEEEchhH---HHHHHHHcc----CCCCCCC--CHHHH
Q psy8556 87 IEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTM---LYFKALRDG----INKLPPA--NLKLR 157 (298)
Q Consensus 87 ~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~---~y~~~ll~~----~~~~p~~--d~~lr 157 (298)
.....+. +..+.......+++.++....... . ....+--++||.. ...++++.+ +.|.|.. |+..+
T Consensus 80 ~~~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~-~---~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~ 154 (202)
T cd03233 80 KYPGEII-YVSEEDVHFPTLTVRETLDFALRC-K---GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTA 154 (202)
T ss_pred hhcceEE-EEecccccCCCCcHHHHHhhhhhh-c---cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHH
Confidence 1111111 111111222345666655432211 0 1122223677766 355777755 3455543 66656
Q ss_pred HHHHHHH
Q psy8556 158 TKFNIDI 164 (298)
Q Consensus 158 ~~l~~~~ 164 (298)
+.+.+.+
T Consensus 155 ~~~~~~l 161 (202)
T cd03233 155 LEILKCI 161 (202)
T ss_pred HHHHHHH
Confidence 5554443
No 93
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=1e-07 Score=91.67 Aligned_cols=144 Identities=15% Similarity=0.214 Sum_probs=77.7
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e 88 (298)
..++.|++ ...+.++++ .-.+|++++|+||||||||||++.||+... +++|+| +.|.++....|....
T Consensus 24 ~v~~~~~~-~~~l~~vsl-----~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~~~~~~r~ 92 (377)
T PRK11607 24 NLTKSFDG-QHAVDDVSL-----TIYKGEIFALLGASGCGKSTLLRMLAGFEQ-----PTAGQIMLDGVDLSHVPPYQRP 92 (377)
T ss_pred eEEEEECC-EEEEeeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCCCCHHHCC
Confidence 34556643 234444443 224578999999999999999999998876 899999 577766533222222
Q ss_pred Hcccccc--cccccCcCccchHHHHH-----HHHHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----C
Q psy8556 89 REITPHH--LIDIIEPTKSYSVIQFC-----EDALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----I 146 (298)
Q Consensus 89 ~~~v~~~--l~~~~~~~e~~s~~~f~-----~~~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----~ 146 (298)
...+++. ++..++..+++...... ....+.+.++.+ ...+--++||.. ...++++.+ +
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2223322 22222222332211000 001111222221 112224788876 466888865 4
Q ss_pred CCCCC--CCHHHHHHHHHHH
Q psy8556 147 NKLPP--ANLKLRTKFNIDI 164 (298)
Q Consensus 147 ~~~p~--~d~~lr~~l~~~~ 164 (298)
.|.|. .|...+..+...+
T Consensus 173 LDEP~s~LD~~~r~~l~~~l 192 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEV 192 (377)
T ss_pred EeCCcccCCHHHHHHHHHHH
Confidence 45664 3777777776544
No 94
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.62 E-value=5.7e-08 Score=83.90 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=33.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM 77 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~ 77 (298)
++|++++|+||||||||||++.|++.+. +++|.| +.|.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~ 61 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI-----PNGDNDEWDGI 61 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCcEEEECCE
Confidence 6688999999999999999999998876 889998 4553
No 95
>PRK07429 phosphoribulokinase; Provisional
Probab=98.62 E-value=2.1e-08 Score=94.60 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=32.1
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCC---CeEeecCC
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIP---CEIISIDS 70 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~---~~iis~Ds 70 (298)
++.++.+|+|+|+|||||||+++.|++.++ +.+++.|.
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd 44 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDD 44 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecc
Confidence 346678999999999999999999999987 45677775
No 96
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.61 E-value=2.6e-07 Score=81.54 Aligned_cols=58 Identities=16% Similarity=0.069 Sum_probs=43.4
Q ss_pred hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+..++.|++.. + |+++ .-.+ ++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 4 ~~l~~~~~~~~--~-~vsl-----~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 62 (214)
T cd03297 4 VDIEKRLPDFT--L-KIDF-----DLNE-EVTGIFGASGAGKSTLLRCIAGLEK-----PDGGTIVLNGTVLF 62 (214)
T ss_pred eeeeEecCCee--e-CceE-----EEcc-eeEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEecc
Confidence 35678887642 2 4443 2245 7899999999999999999998876 788988 5666553
No 97
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.61 E-value=7e-08 Score=99.31 Aligned_cols=125 Identities=15% Similarity=0.073 Sum_probs=76.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH--HHHcccccccccc-cCcCc------
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI--IEREITPHHLIDI-IEPTK------ 104 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~--~e~~~v~~~l~~~-~~~~e------ 104 (298)
++|+.++|+|+||||||||++.|.+.+. +.+|+| +.|.|+..-.+.. ..+..+++.-.-+ -+..+
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~-----p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~ 571 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYK-----PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGN 571 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCC
Confidence 5677899999999999999999999988 899999 6888876433322 1223333321100 01111
Q ss_pred -cchHHHHHH-----HHHHhhHHHhhcCCceEEEchhH---------HHHHHHHcc----CCCCCCC--CHHHHHHHHHH
Q psy8556 105 -SYSVIQFCE-----DALFSIKNILKKKKLPLLVGGTM---------LYFKALRDG----INKLPPA--NLKLRTKFNID 163 (298)
Q Consensus 105 -~~s~~~f~~-----~~~~~i~~i~~~~~~~IlvGGt~---------~y~~~ll~~----~~~~p~~--d~~lr~~l~~~ 163 (298)
..+..+..+ .+.+.|......-+.+|-.||.+ ...++++.+ +.|.|.+ |++..+++.+.
T Consensus 572 p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~ 651 (709)
T COG2274 572 PEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651 (709)
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH
Confidence 222222222 23455666666677788666655 467888876 3455543 66666555444
Q ss_pred H
Q psy8556 164 I 164 (298)
Q Consensus 164 ~ 164 (298)
+
T Consensus 652 L 652 (709)
T COG2274 652 L 652 (709)
T ss_pred H
Confidence 3
No 98
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.60 E-value=3.6e-08 Score=85.38 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=42.1
Q ss_pred CchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 15 DPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
|+++...++++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 1 ~~~~~~il~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~ 57 (190)
T TIGR01166 1 YPGGPEVLKGLNF-----AAERGEVLALLGANGAGKSTLLLHLNGLLR-----PQSGAVLIDGEPLD 57 (190)
T ss_pred CCCccceecceeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEECCEEcc
Confidence 3444455666655 224567899999999999999999998776 789998 5776653
No 99
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.60 E-value=2.3e-08 Score=86.35 Aligned_cols=129 Identities=21% Similarity=0.294 Sum_probs=64.9
Q ss_pred EEEEECCCchhHHHHHHHHHhhC-----CCeEeecCCceEeccccCC------CCCCCHHHHcccccccccccCcCc-cc
Q psy8556 39 KVAILGPTASGKSSVALKISEYI-----PCEIISIDSALVYCDMDIG------TNKPSIIEREITPHHLIDIIEPTK-SY 106 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l-----~~~iis~Ds~qvy~g~~i~------t~kp~~~e~~~v~~~l~~~~~~~e-~~ 106 (298)
+|+|.|++|||||||+..|+..+ +..+|+.|+ +|+...-. .+.+...+...+..++........ .+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Dd--f~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~ 78 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDD--YYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVEL 78 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhh--cccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeec
Confidence 58999999999999999999986 356788887 55422000 000100111111111111110000 00
Q ss_pred hHHHHHHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCC-----CCCCH-HHHHHHHHHHHhhCHH
Q psy8556 107 SVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKL-----PPANL-KLRTKFNIDINKYGIS 170 (298)
Q Consensus 107 s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~-----p~~d~-~lr~~l~~~~~~~g~~ 170 (298)
...+|.......-..+...+...|++.|...+...+ ..+.++ ++.+. .+.+++.++..++|..
T Consensus 79 p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l-~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~ 147 (179)
T cd02028 79 PIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNERL-RSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYS 147 (179)
T ss_pred ccceeECCccCCCceEEeCCCCEEEEecHHhcCHhH-HhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCC
Confidence 011111100000001112234467888988765543 333333 45555 7788999998888865
No 100
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.59 E-value=3.8e-07 Score=81.73 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=43.6
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 7 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 7 LSFAYGA-RRALDDVSF-----TVRPGEFVALLGPNGAGKSTLFSLLTRLYV-----AQEGQISVAGHDLR 66 (236)
T ss_pred eEEEECC-EEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcc
Confidence 3455653 345555554 224577899999999999999999998776 889998 5776664
No 101
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.59 E-value=3.4e-07 Score=87.31 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=35.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~i~ 62 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTR-----PDEGEIVLNGRTLF 62 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECc
Confidence 5678999999999999999999998876 889998 5776664
No 102
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.59 E-value=4.1e-07 Score=84.72 Aligned_cols=60 Identities=27% Similarity=0.336 Sum_probs=45.3
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.++.|++ ...++|+++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++..
T Consensus 8 l~~~~~~-~~~l~~is~-----~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-----~~~G~i~i~g~~~~~ 68 (301)
T TIGR03522 8 LTKLYGT-QNALDEVSF-----EAQKGRIVGFLGPNGAGKSTTMKIITGYLP-----PDSGSVQVCGEDVLQ 68 (301)
T ss_pred EEEEECC-EEEEEEeEE-----EEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc
Confidence 4566754 345566555 224577999999999999999999998776 899999 57776653
No 103
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.59 E-value=3.1e-08 Score=86.81 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=44.2
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
.++.|+++...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++
T Consensus 5 l~~~~~~~~~~l~~v~~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~ 64 (205)
T cd03226 5 ISFSYKKGTEILDDLSL-----DLYAGEIIALTGKNGAGKTTLAKILAGLIK-----ESSGSILLNGKPI 64 (205)
T ss_pred EEEEeCCcCceeeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEh
Confidence 45667653445555554 224577899999999999999999998776 889998 567655
No 104
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.59 E-value=2.6e-07 Score=88.06 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=35.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~~~ 63 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLTR-----PQKGRIVLNGRVLF 63 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcc
Confidence 5678999999999999999999998876 889998 5676654
No 105
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.58 E-value=1.3e-08 Score=88.72 Aligned_cols=24 Identities=29% Similarity=0.654 Sum_probs=22.8
Q ss_pred EEEEECCCchhHHHHHHHHHhhCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+|+|.||+|||||||++.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999999886
No 106
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=4.4e-07 Score=82.13 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=44.0
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.++ +++|.| +.|.++..
T Consensus 11 l~~~~~~-~~~l~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~ 71 (255)
T PRK11300 11 LMMRFGG-LLAVNNVNL-----EVREQEIVSLIGPNGAGKTTVFNCLTGFYK-----PTGGTILLRGQHIEG 71 (255)
T ss_pred EEEEECC-EEEEEeeee-----EEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCcceEEECCEECCC
Confidence 4556653 344555544 224678999999999999999999998876 888988 57766653
No 107
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.58 E-value=9.2e-08 Score=82.11 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=43.6
Q ss_pred hcccCchhh-hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 11 DTETDPQQR-QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 11 ~~~~~~~~~-~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
.+.+|++.. ..+.++++ .-.+|++++|+||||||||||++.|++..+ +++|+| +.|.++
T Consensus 6 ~~~~~~~~~~~~l~~i~~-----~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~ 66 (178)
T cd03247 6 VSFSYPEQEQQVLKNLSL-----ELKQGEKIALLGRSGSGKSTLLQLLTGDLK-----PQQGEITLDGVPV 66 (178)
T ss_pred EEEEeCCCCccceEEEEE-----EEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCEEH
Confidence 456676542 45555554 224577899999999999999999998876 788988 566554
No 108
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.58 E-value=5.5e-08 Score=88.17 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=45.5
Q ss_pred cCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 14 TDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
+||..+..+++++.......-.+|++++|+||||||||||++.|++.+. +++|+|+
T Consensus 2 ~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-----p~~G~i~ 57 (246)
T cd03237 2 TYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-----PDEGDIE 57 (246)
T ss_pred CCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEE
Confidence 5777777888888844444446799999999999999999999998876 7788884
No 109
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=3.8e-07 Score=83.32 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=43.6
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.++ +++|.| +.|.++.
T Consensus 17 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 76 (265)
T PRK10575 17 VSFRVPG-RTLLHPLSL-----TFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-----PSEGEILLDAQPLE 76 (265)
T ss_pred EEEEECC-EEEEeeeee-----EEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEehh
Confidence 3456653 345555554 224577899999999999999999998776 788998 5776654
No 110
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=4.6e-07 Score=79.66 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=42.1
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..+++++++ .-.+| +++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 6 ~~~~~~~-~~~l~~vs~-----~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 64 (211)
T cd03264 6 LTKRYGK-KRALDGVSL-----TLGPG-MYGLLGPNGAGKTTLMRILATLTP-----PSSGTIRIDGQDVL 64 (211)
T ss_pred EEEEECC-EEEEcceeE-----EEcCC-cEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCCccc
Confidence 3455643 245555554 11236 799999999999999999998876 889999 5776654
No 111
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.7e-07 Score=91.98 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=49.4
Q ss_pred hcccCchhh-hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCC
Q psy8556 11 DTETDPQQR-QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKP 84 (298)
Q Consensus 11 ~~~~~~~~~-~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp 84 (298)
++=+||+++ ..++|+++ .-..|+-|+|+|+|||||||++..|++.+. +++|+| ..|.++...++
T Consensus 342 vsF~y~~~~~~~L~~~~l-----~l~~GEkvAIlG~SGsGKSTllqLl~~~~~-----~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 342 VSFTYPGQQTKALKNFNL-----TLAQGEKVAILGRSGSGKSTLLQLLAGAWD-----PQQGSITLNGVEIASLDE 407 (573)
T ss_pred ceeecCCCccchhhccce-----eecCCCeEEEECCCCCCHHHHHHHHHhccC-----CCCCeeeECCcChhhCCh
Confidence 344566666 66666666 224455699999999999999999999988 899999 78888775554
No 112
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=2.6e-07 Score=80.34 Aligned_cols=130 Identities=12% Similarity=0.031 Sum_probs=70.4
Q ss_pred hcccCch---hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH
Q psy8556 11 DTETDPQ---QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI 86 (298)
Q Consensus 11 ~~~~~~~---~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~ 86 (298)
.+..|+. +..++.++++ .-.+|++++|+||||||||||++.|++... ..+++|+| +.|.++. ....
T Consensus 9 l~~~~~~~~~~~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~G~i~~~g~~~~--~~~~ 78 (192)
T cd03232 9 LNYTVPVKGGKRQLLNNISG-----YVKPGTLTALMGESGAGKTTLLDVLAGRKT---AGVITGEILINGRPLD--KNFQ 78 (192)
T ss_pred eEEEecCCCCceEeEEccEE-----EEeCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCcceEEEECCEehH--HHhh
Confidence 4556754 1345555554 224577899999999999999999997542 12678888 5665542 0000
Q ss_pred HHHcccccccccccCcCccchHHHHHHHHHHhhHHHhhcCCceEEEchhH---HHHHHHHcc----CCCCCCC--CHHHH
Q psy8556 87 IEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTM---LYFKALRDG----INKLPPA--NLKLR 157 (298)
Q Consensus 87 ~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~~i~~i~~~~~~~IlvGGt~---~y~~~ll~~----~~~~p~~--d~~lr 157 (298)
.....+++. ......+++.++...... + . -++||.. ...++++.+ +.|.|.. |+.-+
T Consensus 79 ~~i~~~~q~----~~~~~~~tv~~~l~~~~~-~----~-----~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~ 144 (192)
T cd03232 79 RSTGYVEQQ----DVHSPNLTVREALRFSAL-L----R-----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA 144 (192)
T ss_pred hceEEeccc----CccccCCcHHHHHHHHHH-H----h-----cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHH
Confidence 011111111 111223455555432211 1 0 4777766 355777765 3455643 66666
Q ss_pred HHHHHHH
Q psy8556 158 TKFNIDI 164 (298)
Q Consensus 158 ~~l~~~~ 164 (298)
..+.+.+
T Consensus 145 ~~l~~~l 151 (192)
T cd03232 145 YNIVRFL 151 (192)
T ss_pred HHHHHHH
Confidence 6555443
No 113
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.55 E-value=8.3e-07 Score=77.57 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=43.9
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..++.+++. .-.+|++++|+||||||||||++.|++..+ +++|+| +.|.++.
T Consensus 7 l~~~~~~-~~il~~~s~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~ 66 (200)
T PRK13540 7 LDFDYHD-QPLLQQISF-----HLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-----PEKGEILFERQSIK 66 (200)
T ss_pred EEEEeCC-eeEEeeeeE-----EECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeeEEECCCccc
Confidence 3556654 345555555 224677999999999999999999998876 889998 5666654
No 114
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=6.2e-07 Score=80.59 Aligned_cols=58 Identities=17% Similarity=0.071 Sum_probs=43.3
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++... +++|+| +.|.++
T Consensus 8 l~~~~~~-~~il~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~ 66 (242)
T PRK11124 8 INCFYGA-HQALFDITL-----DCPQGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHF 66 (242)
T ss_pred eEEEECC-eeeEeeeee-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEec
Confidence 3556653 345555554 224678999999999999999999998776 789998 577665
No 115
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.54 E-value=7e-07 Score=81.74 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=43.8
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 13 l~~~~~~-~~il~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 73 (269)
T PRK11831 13 VSFTRGN-RCIFDNISL-----TVPRGKITAIMGPSGIGKTTLLRLIGGQIA-----PDHGEILFDGENIPA 73 (269)
T ss_pred eEEEECC-EEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccc
Confidence 3455643 345555554 224577899999999999999999998876 789998 57766643
No 116
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.54 E-value=4.6e-08 Score=86.55 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=45.0
Q ss_pred hcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+++ ...+.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 6 l~~~~~~~~~~il~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 67 (220)
T cd03263 6 LTKTYKKGTKPAVDDLSL-----NVYKGEIFGLLGHNGAGKTTTLKMLTGELR-----PTSGTAYINGYSIR 67 (220)
T ss_pred eEEEeCCCCceeecceEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecc
Confidence 45667653 455666555 224577899999999999999999998876 789998 5676654
No 117
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=5e-07 Score=82.47 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=41.4
Q ss_pred hhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 17 QQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+....++++++ .-++|++++|+||||||||||++.|++.++..--.+++|+| +.|.++.
T Consensus 19 ~~~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 19 GNFMAVRDSHV-----PIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred CCEEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence 33445566555 22467799999999999999999999887510000378888 6777664
No 118
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.54 E-value=6.4e-08 Score=88.21 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=43.6
Q ss_pred hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
++.++.|+.+...+++++. -.+|++++|+||||||||||++.|++.+. +++|+|+
T Consensus 4 ~~~~~~y~~~~~~l~~i~~------i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-----p~~G~I~ 58 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV------PREGQVLGLVGPNGIGKSTALKILAGKLK-----PNLGKFD 58 (255)
T ss_pred cCcceeecCcchhhhcCCC------CCCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEe
Confidence 4678889766555666542 35577899999999999999999999887 7888883
No 119
>PRK10908 cell division protein FtsE; Provisional
Probab=98.53 E-value=4.2e-08 Score=87.06 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=45.5
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+++...++++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 7 l~~~~~~~~~~l~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~ 67 (222)
T PRK10908 7 VSKAYLGGRQALQGVTF-----HMRPGEMAFLTGHSGAGKSTLLKLICGIER-----PSAGKIWFSGHDIT 67 (222)
T ss_pred eEEEecCCCeEEeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcc
Confidence 45667544556666655 224577899999999999999999998876 889998 5776664
No 120
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=7e-07 Score=81.80 Aligned_cols=41 Identities=29% Similarity=0.271 Sum_probs=35.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~i~g~~~~ 89 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIE-----PTSGKVLIDGQDIA 89 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcc
Confidence 5678999999999999999999998876 788988 5676654
No 121
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=5e-07 Score=81.92 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=43.3
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 8 l~~~~~~-~~il~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 67 (255)
T PRK11231 8 LTVGYGT-KRILNDLSL-----SLPTGKITALIGPNGCGKSTLLKCFARLLT-----PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEECC-EEEEeeeee-----EEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCcEEEECCEEhH
Confidence 4556654 345555554 224577899999999999999999998776 788888 5665543
No 122
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.52 E-value=1.9e-08 Score=89.73 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=27.2
Q ss_pred EEEEECCCchhHHHHHHHHHhhCC-------CeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIP-------CEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~-------~~iis~Ds 70 (298)
+|+|+||||||||||++.|++.+. ..+++.|.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~ 39 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDG 39 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCc
Confidence 589999999999999999999873 34677777
No 123
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.3e-07 Score=91.79 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=53.2
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH--HH
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI--IE 88 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~--~e 88 (298)
+-.||+|...+.+++. +-++|+.++|+|+||||||||+..|++.+. +++|.| .+|.+....++.. ..
T Consensus 327 ~~~y~~g~~~l~~l~~-----t~~~g~~talvG~SGaGKSTLl~lL~G~~~-----~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 327 SFRYPDGKPALSDLNL-----TIKAGQLTALVGASGAGKSTLLNLLLGFLA-----PTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred EEecCCCCcccCCcee-----EecCCcEEEEECCCCCCHHHHHHHHhCcCC-----CCCceEEECCccccccCHHHHHhH
Confidence 4456666555555444 336677899999999999999999999887 788888 6888776555433 34
Q ss_pred Hcccccc
Q psy8556 89 REITPHH 95 (298)
Q Consensus 89 ~~~v~~~ 95 (298)
+..++|+
T Consensus 397 i~~v~Q~ 403 (559)
T COG4988 397 ISWVSQN 403 (559)
T ss_pred eeeeCCC
Confidence 4556654
No 124
>PLN02772 guanylate kinase
Probab=98.52 E-value=1.6e-07 Score=89.94 Aligned_cols=142 Identities=17% Similarity=0.172 Sum_probs=85.6
Q ss_pred hcccCchhhhhhcc-ccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHH
Q psy8556 11 DTETDPQQRQLTAD-FRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIER 89 (298)
Q Consensus 11 ~~~~~~~~~~~~~~-~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~ 89 (298)
+|..-.+|+.+++. ....+.+......++++|+||||||||||++.|...++.. +......+|.+|.+.|.
T Consensus 108 ~t~~~~~~~~~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~--------~~~~vshTTR~pR~gE~ 179 (398)
T PLN02772 108 DTPFVREQKKLLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPREMEK 179 (398)
T ss_pred CCHHHHhhcccccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhcccc--------ccccccccCCCCccccc
Confidence 34444566554443 3335555555567899999999999999999998765411 12234567888888888
Q ss_pred cccccccccccCcCccchH----------HHHHHHHHHhhHHHhhcCCceEE---EchhHHHHHHHHccC--CCCCCCCH
Q psy8556 90 EITPHHLIDIIEPTKSYSV----------IQFCEDALFSIKNILKKKKLPLL---VGGTMLYFKALRDGI--NKLPPANL 154 (298)
Q Consensus 90 ~~v~~~l~~~~~~~e~~s~----------~~f~~~~~~~i~~i~~~~~~~Il---vGGt~~y~~~ll~~~--~~~p~~d~ 154 (298)
.+..+|+.+...+...... +.++....+.+..+.+.|+.+|+ +.|...+.+..+..+ +..|++..
T Consensus 180 dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlE 259 (398)
T PLN02772 180 DGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSME 259 (398)
T ss_pred CCceEeeCCHHHHHHHHHhCccceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHH
Confidence 8876776653222111111 22333446677788888998886 345544444444332 22366656
Q ss_pred HHHHHH
Q psy8556 155 KLRTKF 160 (298)
Q Consensus 155 ~lr~~l 160 (298)
++++|+
T Consensus 260 eLe~RL 265 (398)
T PLN02772 260 ELEKRL 265 (398)
T ss_pred HHHHHH
Confidence 666554
No 125
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.52 E-value=3.7e-07 Score=81.93 Aligned_cols=58 Identities=26% Similarity=0.217 Sum_probs=43.1
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+..|+. ..++.+++. .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 7 ~~~~~~-~~il~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~i~g~~~~ 65 (237)
T TIGR00968 7 SKRFGS-FQALDDVNL-----EVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-----PDSGRIRLNGQDAT 65 (237)
T ss_pred EEEECC-eeeeeeEEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcC
Confidence 455653 345666655 224577899999999999999999998775 788888 5776654
No 126
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.52 E-value=5.5e-08 Score=85.66 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=43.4
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
..+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++
T Consensus 4 ~l~~~~~~-~~~l~~isl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~ 63 (213)
T cd03235 4 DLTVSYGG-HPVLEDVSF-----EVKPGEFLAIVGPNGAGKSTLLKAILGLLK-----PTSGSIRVFGKPL 63 (213)
T ss_pred cceeEECC-EEeeeccee-----EEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCccH
Confidence 34566754 345555554 224577899999999999999999998776 788988 566544
No 127
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.51 E-value=2.7e-07 Score=95.09 Aligned_cols=43 Identities=30% Similarity=0.347 Sum_probs=37.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
++|+.++|+||||||||||++.|++.+. +++|+| +.|.++..-
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~~~ 520 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFET-----PESGSVFYDGQDLAGL 520 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEcCcC
Confidence 6788999999999999999999999887 899999 688887643
No 128
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.50 E-value=1e-07 Score=87.77 Aligned_cols=32 Identities=19% Similarity=0.452 Sum_probs=26.9
Q ss_pred EEEEECCCchhHHHHHHHHHhhCC---CeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIP---CEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~---~~iis~Ds 70 (298)
+++|+|+||||||||++.|++.++ +.+++.|.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd 35 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDD 35 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcc
Confidence 589999999999999999999875 44666664
No 129
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=1.5e-07 Score=84.49 Aligned_cols=60 Identities=22% Similarity=0.181 Sum_probs=44.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 8 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~ 68 (239)
T cd03296 8 VSKRFGD-FVALDDVSL-----DIPSGELVALLGPSGSGKTTLLRLIAGLER-----PDSGTILFGGEDATD 68 (239)
T ss_pred EEEEECC-EEeeeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc
Confidence 4556654 345555544 224577999999999999999999998876 789998 57766543
No 130
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.50 E-value=8.9e-07 Score=79.47 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=33.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
.+|++++|+||||||||||++.|++.+. +++|+| +.|.++
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~ 85 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQ-----PTSGEVRVAGLVP 85 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEc
Confidence 4577899999999999999999998776 788988 455544
No 131
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=4.3e-07 Score=87.96 Aligned_cols=42 Identities=24% Similarity=0.270 Sum_probs=36.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~~-----p~sG~I~i~G~~i~~ 94 (400)
T PRK10070 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIE-----PTRGQVLIDGVDIAK 94 (400)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCCEEEECCEECCc
Confidence 5688999999999999999999998876 889999 57777754
No 132
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.49 E-value=7.4e-08 Score=85.51 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=45.1
Q ss_pred hcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++..|++.. ..+.+++. .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 7 v~~~~~~~~~~~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 71 (228)
T cd03257 7 LSVSFPTGGGSVKALDDVSF-----SIKKGETLGLVGESGSGKSTLARAILGLLK-----PTSGSIIFDGKDLLK 71 (228)
T ss_pred eeEeccCCCcceeeecCcee-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccc
Confidence 456676542 45555554 224577899999999999999999998776 889998 57766653
No 133
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.49 E-value=3.3e-08 Score=85.29 Aligned_cols=91 Identities=20% Similarity=0.240 Sum_probs=55.8
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHH----
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQF---- 111 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f---- 111 (298)
++++++|+||+|||||||+..|...++.. +......+|.+|...|..+..+|+++-..+......++|
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--------~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~ 72 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDK--------FGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYG 72 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTT--------EEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccc--------cccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEe
Confidence 46789999999999999999999887622 222334467788888888888877654322211111111
Q ss_pred ------HHHHHHhhHHHhhcCCceEEEch
Q psy8556 112 ------CEDALFSIKNILKKKKLPLLVGG 134 (298)
Q Consensus 112 ------~~~~~~~i~~i~~~~~~~IlvGG 134 (298)
+......+..+...|+.+|+...
T Consensus 73 ~~~g~~YGt~~~~i~~~~~~gk~~il~~~ 101 (183)
T PF00625_consen 73 EYDGNYYGTSKSAIDKVLEEGKHCILDVD 101 (183)
T ss_dssp EETTEEEEEEHHHHHHHHHTTTEEEEEET
T ss_pred eecchhhhhccchhhHhhhcCCcEEEEcc
Confidence 11123456677778888877543
No 134
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.48 E-value=3.9e-07 Score=92.01 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=37.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|+.++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~ 409 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYD-----IDEGEILLDGHDLRD 409 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCceEEECCEEhhh
Confidence 6788999999999999999999999887 899999 57777654
No 135
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.48 E-value=5.1e-07 Score=85.35 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=36.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+|++++|+|+||||||||++.|++.+. +++|+| |.|.++..
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-----p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLVK-----ATDGEVAWLGKDLLG 87 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCCcEEEECCEECCc
Confidence 5678999999999999999999998876 789999 68877654
No 136
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.48 E-value=2.7e-07 Score=95.40 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=36.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|+.++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~~ 540 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQ-----ARSGEILLNGFSLKD 540 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCcEEEECCEEHHH
Confidence 6678899999999999999999999887 899999 57877653
No 137
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.48 E-value=3e-07 Score=93.10 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=36.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
++|+.++|+|+||||||||++.|++.+. +++|+| +.|.++.
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~idg~~i~ 406 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYP-----LTEGEIRLDGRPLS 406 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEEhh
Confidence 6788999999999999999999999887 889998 5777765
No 138
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.48 E-value=8.2e-08 Score=88.07 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=44.9
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
..+..|+++...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++
T Consensus 11 ~l~~~~~~~~~il~~vsl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i 71 (272)
T PRK15056 11 DVTVTWRNGHTALRDASF-----TVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKISILGQPT 71 (272)
T ss_pred eEEEEecCCcEEEEeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEh
Confidence 346677755556666655 223577899999999999999999998776 788888 566554
No 139
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.48 E-value=1.2e-06 Score=84.86 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=45.5
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ...+.++++ .-++|++++|+||||||||||++.|++.+. +++|.| +.|.++..
T Consensus 9 ls~~y~~-~~vL~~vs~-----~i~~Geiv~liGpNGaGKSTLLk~LaGll~-----p~sG~I~l~G~~i~~ 69 (402)
T PRK09536 9 LSVEFGD-TTVLDGVDL-----SVREGSLVGLVGPNGAGKTTLLRAINGTLT-----PTAGTVLVAGDDVEA 69 (402)
T ss_pred EEEEECC-EEEEEeeEE-----EECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEEcCc
Confidence 4566764 455666665 224677999999999999999999998876 889998 57766653
No 140
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=7.5e-08 Score=88.51 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=46.6
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|+++...+.|+++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 9 ~l~~~~~~~~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 70 (274)
T PRK13647 9 DLHFRYKDGTKALKGLSL-----SIPEGSKTALLGPNGAGKSTLLLHLNGIYL-----PQRGRVKVMGREVN 70 (274)
T ss_pred EEEEEeCCCCeeeeeEEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence 456677654456666665 224577899999999999999999998876 889999 6777664
No 141
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.47 E-value=1.5e-06 Score=78.61 Aligned_cols=64 Identities=14% Similarity=-0.008 Sum_probs=43.6
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++..+..-..+++|+| +.|.++.
T Consensus 12 l~~~~~~-~~il~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 76 (253)
T PRK14242 12 LSFFYGD-FQALHDISL-----EFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76 (253)
T ss_pred eEEEECC-eeeecceeE-----EEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence 4556653 345556555 22457789999999999999999999875311111478888 5776664
No 142
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.47 E-value=1.7e-07 Score=96.84 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=37.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|+.++|+||||||||||++.|++.+. +++|.| +.|.++..
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~~ 545 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQ-----PWSGEILFDGIPREE 545 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEeHHH
Confidence 6788999999999999999999999887 889998 67877653
No 143
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.46 E-value=7e-07 Score=78.16 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=44.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++... ..+++|+| +.|.++...
T Consensus 6 l~~~~~~-~~~l~~is~-----~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~p~~G~i~~~g~~~~~~ 69 (200)
T cd03217 6 LHVSVGG-KEILKGVNL-----TIKKGEVHALMGPNGSGKSTLAKTIMGHPK---YEVTEGEILFKGEDITDL 69 (200)
T ss_pred EEEEeCC-EEeeeccce-----EECCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCccEEEECCEECCcC
Confidence 4556653 345555554 224577899999999999999999998731 22788988 577766543
No 144
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.46 E-value=9.2e-08 Score=83.66 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=44.0
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 4 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 63 (206)
T TIGR03608 4 ISKKFGD-KIILDDLNL-----TIEKGKMYAIIGESGSGKSTLLNIIGLLEK-----FDSGQVYLNGKETP 63 (206)
T ss_pred eEEEECC-EEEEeceEE-----EEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcc
Confidence 4566764 345666655 223577899999999999999999998876 889998 5666643
No 145
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.46 E-value=1.1e-06 Score=79.77 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=42.3
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..| +...+.++++ .-.+|++++|+||||||||||++.|++...... .+++|+| +.|.++.
T Consensus 10 l~~~~--~~~il~~vsl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-~~~~G~i~~~g~~i~ 72 (254)
T PRK10418 10 IALQA--AQPLVHGVSL-----TLQRGRVLALVGGSGSGKSLTCAAALGILPAGV-RQTAGRVLLDGKPVA 72 (254)
T ss_pred eEEEe--ccceecceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCcCCEEEECCeecc
Confidence 34556 2344555554 224577899999999999999999998876110 0188998 5676653
No 146
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.8e-06 Score=78.02 Aligned_cols=64 Identities=22% Similarity=0.101 Sum_probs=43.0
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-++|++++|+||||||||||++.|++.+...--.+++|+| +.|.++.
T Consensus 9 l~~~~~~-~~~l~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 9 LKVSFGQ-VEVLDGVNL-----EIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred eEEEECC-eeeeeccee-----EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECC
Confidence 4556654 334555544 22467799999999999999999999876410000368888 5777664
No 147
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=9.7e-07 Score=81.33 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=45.8
Q ss_pred hhcccCchh-----hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQ-----RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|+++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++.
T Consensus 9 ~l~~~~~~~~~~~~~~vl~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~i~ 75 (280)
T PRK13633 9 NVSYKYESNEESTEKLALDDVNL-----EVKKGEFLVILGRNGSGKSTIAKHMNALLI-----PSEGKVYVDGLDTS 75 (280)
T ss_pred eeEEEcCCCCCCCCcceeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEecc
Confidence 356677643 346666665 223577899999999999999999998876 889998 5776664
No 148
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.46 E-value=5.5e-07 Score=89.70 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=45.7
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
..++.|++ ..+++++++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++..
T Consensus 10 ~l~~~~~~-~~il~~vs~-----~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~ 71 (510)
T PRK09700 10 GIGKSFGP-VHALKSVNL-----TVYPGEIHALLGENGAGKSTLMKVLSGIHE-----PTKGTITINNINYNK 71 (510)
T ss_pred eeEEEcCC-eEEeeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHcCCcC-----CCccEEEECCEECCC
Confidence 34566753 345666666 223577899999999999999999998776 789998 57777653
No 149
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=8.5e-08 Score=87.24 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=44.1
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 7 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 66 (255)
T PRK11248 7 LYADYGG-KPALEDINL-----TLESGELLVVLGPSGCGKTTLLNLIAGFVP-----YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEeCC-eeeEeeeeE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECC
Confidence 3556654 345566555 224577899999999999999999998876 789998 5776654
No 150
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.45 E-value=3.7e-07 Score=92.04 Aligned_cols=61 Identities=25% Similarity=0.278 Sum_probs=46.0
Q ss_pred ccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCC
Q psy8556 13 ETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNK 83 (298)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~k 83 (298)
=.||.+...++|+++ .-++|+.++|+|||||||||+++.|++.++ +++|+|+ +|.++..-.
T Consensus 336 f~y~~~~~vl~~is~-----~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~-----~~~G~I~idg~dI~~i~ 397 (567)
T COG1132 336 FSYPGKKPVLKDISF-----SIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-----PTSGEILIDGIDIRDIS 397 (567)
T ss_pred EEcCCCCccccCceE-----EEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCEehhhcC
Confidence 345544555555555 235677899999999999999999999988 7889985 688876433
No 151
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.6e-06 Score=78.85 Aligned_cols=64 Identities=16% Similarity=0.052 Sum_probs=42.7
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++......-.+++|+| +.|.++.
T Consensus 18 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 18 LNLWYGE-KQALKNVSM-----QIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred eEEEeCC-eeeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 3455653 345555554 22457789999999999999999999876410000268888 5676654
No 152
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=7.7e-07 Score=79.77 Aligned_cols=59 Identities=27% Similarity=0.255 Sum_probs=43.3
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++. .+.+++. .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++..
T Consensus 6 l~~~~~~~--~l~~is~-----~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-----p~~G~v~i~g~~~~~ 65 (235)
T cd03299 6 LSKDWKEF--KLKNVSL-----EVERGDYFVILGPTGSGKSVLLETIAGFIK-----PDSGKILLNGKDITN 65 (235)
T ss_pred EEEEeCCc--eeeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcCc
Confidence 34556542 3444444 224678999999999999999999998876 888998 57776654
No 153
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.45 E-value=8.7e-07 Score=88.38 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=44.8
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.++.|++ ...++++++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++..
T Consensus 17 l~~~~~~-~~il~~vsl-----~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 77 (510)
T PRK15439 17 ISKQYSG-VEVLKGIDF-----TLHAGEVHALLGGNGAGKSTLMKIIAGIVP-----PDSGTLEIGGNPCAR 77 (510)
T ss_pred EEEEeCC-ceeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 4556653 345666665 124577899999999999999999998876 889998 57766643
No 154
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.45 E-value=2e-07 Score=83.35 Aligned_cols=59 Identities=25% Similarity=0.209 Sum_probs=44.5
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++.| +.+..++++.+ .=++|++++|+||||||||||++.+.+++. +|+|.| ..|.++..
T Consensus 15 ~~~f-G~~~Ild~v~l-----~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-----P~~GeI~i~G~~i~~ 74 (263)
T COG1127 15 TKSF-GDRVILDGVDL-----DVPRGEILAILGGSGSGKSTLLRLILGLLR-----PDKGEILIDGEDIPQ 74 (263)
T ss_pred eeec-CCEEEecCcee-----eecCCcEEEEECCCCcCHHHHHHHHhccCC-----CCCCeEEEcCcchhc
Confidence 3344 33445555554 225688999999999999999999998887 999999 58877653
No 155
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.45 E-value=1.7e-06 Score=78.62 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=43.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 11 l~~~~~~-~~~l~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~ 70 (257)
T PRK10619 11 LHKRYGE-HEVLKGVSL-----QANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGSIVVNGQTIN 70 (257)
T ss_pred eEEEECC-EEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcc
Confidence 3555653 345555554 224677899999999999999999998876 788988 5776553
No 156
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.44 E-value=4.3e-07 Score=80.35 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=44.2
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 6 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~ 66 (222)
T cd03224 6 LNAGYGK-SQILFGVSL-----TVPEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRFDGRDITG 66 (222)
T ss_pred EEeecCC-eeEeeeeeE-----EEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCC
Confidence 4556754 245555544 224578999999999999999999998876 789998 57766543
No 157
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.44 E-value=2.3e-07 Score=84.50 Aligned_cols=59 Identities=29% Similarity=0.255 Sum_probs=44.0
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 8 l~~~~~~-~~il~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~G~i~~~g~~~~ 67 (258)
T PRK13548 8 LSVRLGG-RTLLDDVSL-----TLRPGEVVAILGPNGAGKSTLLRALSGELS-----PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeCC-eeeeeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEcc
Confidence 4556764 345666655 224577899999999999999999998776 789998 5666553
No 158
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=1.1e-07 Score=87.39 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=46.9
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..++.|+++...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++.
T Consensus 8 ~l~~~~~~~~~~l~~vsl-----~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 69 (277)
T PRK13652 8 DLCYSYSGSKEALNNINF-----IAPRNSRIAVIGPNGAGKSTLFRHFNGILK-----PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEeCCCCceeeEeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence 456778755556666665 223577899999999999999999998876 889998 5777664
No 159
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=1.4e-07 Score=84.65 Aligned_cols=61 Identities=21% Similarity=0.311 Sum_probs=45.2
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
..+..|++ ..++.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 8 ~l~~~~~~-~~~l~~~sl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 69 (241)
T PRK10895 8 NLAKAYKG-RRVVEDVSL-----TVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-----RDAGNIIIDDEDISL 69 (241)
T ss_pred CcEEEeCC-EEEEeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 34566754 345555555 224577899999999999999999998876 889998 57766643
No 160
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.43 E-value=3.9e-07 Score=90.98 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=36.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|+.++|+||||||||||++.|++.++ +++|+| +.|.++..
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~I~~~g~~i~~ 388 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVD-----PTEGSIAVNGVPLAD 388 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEehhh
Confidence 5778999999999999999999999887 889999 57777654
No 161
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.43 E-value=1.7e-06 Score=77.90 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=42.7
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.+++. .-++|++++|+||||||||||++.|++... ..+++|.| +.|.++.
T Consensus 7 l~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 7 LHVSVED-KAILRGLNL-----EVRPGEVHAIMGPNGSGKSTLSATLAGRED---YEVTGGTVEFKGKDLL 68 (248)
T ss_pred EEEEeCC-eeeeeccee-----EEcCCCEEEEECCCCCCHHHHHHHHcCCcc---CCCCceEEEECCCccc
Confidence 3556664 345555554 224577899999999999999999998731 12778888 4666654
No 162
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.43 E-value=7.3e-08 Score=89.37 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=30.1
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC-------CeEeecCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP-------CEIISIDS 70 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~-------~~iis~Ds 70 (298)
.+.+.+|+|+|||||||||+++.|.+.+. ..+++.|.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 35688999999999999999999987763 34567776
No 163
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.42 E-value=1.3e-07 Score=80.51 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=41.5
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
..+..|+++..++.+++. .-.+|++++|+||||||||||++.|++.+. +++|+|+
T Consensus 5 ~~~~~~~~~~~~l~~i~l-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~ 59 (166)
T cd03223 5 NLSLATPDGRVLLKDLSF-----EIKPGDRLLITGPSGTGKSSLFRALAGLWP-----WGSGRIG 59 (166)
T ss_pred EEEEEcCCCCeeeecCeE-----EECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEE
Confidence 345677655555555554 224577899999999999999999998876 7888884
No 164
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=1.7e-07 Score=83.82 Aligned_cols=60 Identities=27% Similarity=0.292 Sum_probs=44.5
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+++...+.++++ .-.+|++++|+||||||||||++.|++..+ +++|.| +.|.++.
T Consensus 6 l~~~~~~~~~~l~~i~~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~v~~~g~~~~ 66 (236)
T cd03253 6 VTFAYDPGRPVLKDVSF-----TIPAGKKVAIVGPSGSGKSTILRLLFRFYD-----VSSGSILIDGQDIR 66 (236)
T ss_pred EEEEeCCCCceeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEEhh
Confidence 35567655556666655 123567899999999999999999998776 888988 5666554
No 165
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=2.1e-06 Score=78.62 Aligned_cols=63 Identities=17% Similarity=0.085 Sum_probs=41.9
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+....-.+++|.| +.|.++.
T Consensus 20 ~~~~~~-~~il~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 20 TISYGT-FEAVKNVFC-----DIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred EEEECC-EEEEcceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 445543 334555544 22457789999999999999999999875411011478888 5666653
No 166
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.42 E-value=6e-07 Score=78.19 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=30.9
Q ss_pred EEEEECCCchhHHHHHHHHHhhC-CCeEeecCCceEec
Q psy8556 39 KVAILGPTASGKSSVALKISEYI-PCEIISIDSALVYC 75 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l-~~~iis~Ds~qvy~ 75 (298)
+|+|.|++||||||+++.|+..+ +..+|+.|+ +|.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Dd--f~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDD--FFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEcccc--ccC
Confidence 58999999999999999999998 578899997 554
No 167
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.42 E-value=6.5e-07 Score=78.91 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=48.1
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCC-eEeecCCceE-eccccCCCCCCCHHHH
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPC-EIISIDSALV-YCDMDIGTNKPSIIER 89 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~-~iis~Ds~qv-y~g~~i~t~kp~~~e~ 89 (298)
-..|++..+.+.+++. .- ++.++.+|+||||||||||++++-+.... +-... .|.| |.|.+|-..+.+..++
T Consensus 13 l~~yYg~~~aL~~i~l---~i--~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~-~G~v~~~g~ni~~~~~d~~~l 86 (253)
T COG1117 13 LNLYYGDKHALKDINL---DI--PKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV-EGEVLLDGKNIYDPKVDVVEL 86 (253)
T ss_pred eeEEECchhhhccCce---ec--cCCceEEEECCCCcCHHHHHHHHHhhcccCcCceE-EEEEEECCeeccCCCCCHHHH
Confidence 3455666666666554 11 44568999999999999999999765431 11111 3566 7888887666555555
Q ss_pred cc
Q psy8556 90 EI 91 (298)
Q Consensus 90 ~~ 91 (298)
+.
T Consensus 87 Rr 88 (253)
T COG1117 87 RR 88 (253)
T ss_pred HH
Confidence 43
No 168
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.41 E-value=2.3e-07 Score=82.59 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=45.7
Q ss_pred hcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 11 DTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 11 ~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
.+..|+.+. ..+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++...
T Consensus 12 l~~~~~~~~~~~~~l~~~s~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~~~ 77 (228)
T PRK10584 12 LKKSVGQGEHELSILTGVEL-----VVKRGETIALIGESGSGKSTLLAILAGLDD-----GSSGEVSLVGQPLHQM 77 (228)
T ss_pred eEEEccCCCcceEEEeccEE-----EEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeeEEECCEEcccC
Confidence 456676532 24555554 224678999999999999999999998876 889998 577766543
No 169
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=1.3e-07 Score=87.01 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=45.8
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|+++...+.++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 6 ~l~~~~~~~~~~l~~vsl-----~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~ 67 (275)
T PRK13639 6 DLKYSYPDGTEALKGINF-----KAEKGEMVALLGPNGAGKSTLFLHFNGILK-----PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEeCCCCeeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEECc
Confidence 345667644445666655 224577899999999999999999998776 889999 6777663
No 170
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=2e-07 Score=83.00 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=44.0
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+.+..++.++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 8 l~~~~~~~~~~l~~isl-----~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 68 (229)
T cd03254 8 VNFSYDEKKPVLKDINF-----SIKPGETVAIVGPTGAGKTTLINLLMRFYD-----PQKGQILIDGIDIR 68 (229)
T ss_pred EEEecCCCCccccceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEeHH
Confidence 35567644446666665 224567899999999999999999998876 788988 4555543
No 171
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.41 E-value=1.9e-07 Score=81.34 Aligned_cols=32 Identities=44% Similarity=0.512 Sum_probs=27.6
Q ss_pred EEEEECCCchhHHHHHHHHHhhCC---CeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIP---CEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~---~~iis~Ds 70 (298)
+|+|+||||||||||++.|++.++ ..+++.|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 589999999999999999999873 45777775
No 172
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.41 E-value=4.4e-07 Score=80.01 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=63.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccc--------
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSY-------- 106 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~-------- 106 (298)
.++.+++|+||+|||||||+..|..... . +..-...+|..+...+..+..+|+++...+....
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~--------~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~ 81 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERKL-P--------FHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEW 81 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcCC-c--------ccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEE
Confidence 4578999999999999999999975421 1 1122233455555566666666655432211100
Q ss_pred -h-HHHHHHHHHHhhHHHhhcCCceEEEchhHHHHHHHHcc------CCCCCCCCHHHHHHHHH
Q psy8556 107 -S-VIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDG------INKLPPANLKLRTKFNI 162 (298)
Q Consensus 107 -s-~~~f~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~------~~~~p~~d~~lr~~l~~ 162 (298)
. .+.++......+......|+.+|+.. +.-+...+-.. +...|++...+++|+..
T Consensus 82 ~~~~g~~YGt~~~~i~~~~~~g~~vi~~~-~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~ 144 (206)
T PRK14738 82 AEVYGNYYGVPKAPVRQALASGRDVIVKV-DVQGAASIKRLVPEAVFIFLAPPSMDELTRRLEL 144 (206)
T ss_pred EEEcCceecCCHHHHHHHHHcCCcEEEEc-CHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHH
Confidence 0 01122222345667778888877743 33233333221 12335555566666643
No 173
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1.5e-06 Score=80.48 Aligned_cols=64 Identities=14% Similarity=0.050 Sum_probs=42.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+......+++|+| +.|.++.
T Consensus 45 l~~~~~~-~~il~~is~-----~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 45 LNVFYGD-EQALDDVSM-----DIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred EEEEECC-EeeEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 3445543 234555444 22457799999999999999999999876411111478888 5676654
No 174
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.40 E-value=9e-07 Score=88.44 Aligned_cols=56 Identities=23% Similarity=0.255 Sum_probs=42.7
Q ss_pred hhcccCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556 10 RDTETDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD 76 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g 76 (298)
..+++|+++..++.++++ +.. |..|+|+||||+|||||++.|++..+ +++|.|-.|
T Consensus 326 ~~~~~y~~~~~l~~~~s~~i~~------g~riaiiG~NG~GKSTLlk~l~g~~~-----~~~G~v~~g 382 (530)
T COG0488 326 NVSKGYDGGRLLLKDLSFRIDR------GDRIAIVGPNGAGKSTLLKLLAGELG-----PLSGTVKVG 382 (530)
T ss_pred ccccccCCCceeecCceEEecC------CCEEEEECCCCCCHHHHHHHHhhhcc-----cCCceEEeC
Confidence 457788777777777777 333 45699999999999999999988876 456666433
No 175
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.40 E-value=7.3e-07 Score=88.81 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=35.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 287 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~g~~~~ 328 (510)
T PRK09700 287 CRGEILGFAGLVGSGRTELMNCLFGVDK-----RAGGEIRLNGKDIS 328 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCEECC
Confidence 6688999999999999999999998776 889999 5776664
No 176
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=1.5e-07 Score=86.56 Aligned_cols=62 Identities=19% Similarity=0.094 Sum_probs=45.7
Q ss_pred hhcccCchhh----hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 10 RDTETDPQQR----QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 10 ~~~~~~~~~~----~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
..+..|+++. ..+.++++ .-++|++++|+||||||||||++.|++.+. +++|.| +.|.++..
T Consensus 7 ~l~~~~~~~~~~~~~~l~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~ 73 (280)
T PRK13649 7 NVSYTYQAGTPFEGRALFDVNL-----TIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-----PTQGSVRVDDTLITS 73 (280)
T ss_pred EEEEEcCCCCccccceeeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc
Confidence 3566776532 35555554 224577899999999999999999998876 889998 57766653
No 177
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=8.8e-07 Score=88.18 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=45.2
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..++.|++ ..+++++++ .-.+|++++|+||||||||||++.|++.++. .+++|.| +.|.++.
T Consensus 10 nl~~~~~~-~~il~~isl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 10 NITKTFGG-VKALDNVSL-----KVRAGEIVSLCGENGAGKSTLMKVLSGVYPH---GTYEGEIIFEGEELQ 72 (506)
T ss_pred eeEEEeCC-eEeecceeE-----EEeCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCCCeEEEECCEECC
Confidence 34667754 356666666 1235778999999999999999999987651 1278998 5777764
No 178
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.40 E-value=1.2e-06 Score=85.25 Aligned_cols=113 Identities=21% Similarity=0.194 Sum_probs=72.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCCCCHHHHccc---cccc--ccccCcCccchH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNKPSIIEREIT---PHHL--IDIIEPTKSYSV 108 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~kp~~~e~~~v---~~~l--~~~~~~~e~~s~ 108 (298)
++|++.+|+|.||+|||||++.|.+.+. +|+|+|| +|..+.-..|...-..++ .+|+ ++.++..|++-+
T Consensus 28 ~~GeIHaLLGENGAGKSTLm~iL~G~~~-----P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiL 102 (501)
T COG3845 28 KKGEIHALLGENGAGKSTLMKILFGLYQ-----PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIIL 102 (501)
T ss_pred cCCcEEEEeccCCCCHHHHHHHHhCccc-----CCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhh
Confidence 5688999999999999999999988877 9999995 888777777766555443 4453 333444444322
Q ss_pred HH--------HHHHHHHhhHHHhhcCCceE----EEch----hH---HHHHHHHcc----CCCCCCC
Q psy8556 109 IQ--------FCEDALFSIKNILKKKKLPL----LVGG----TM---LYFKALRDG----INKLPPA 152 (298)
Q Consensus 109 ~~--------f~~~~~~~i~~i~~~~~~~I----lvGG----t~---~y~~~ll~~----~~~~p~~ 152 (298)
+. -.+.+.+.+.++..+-..++ .|+. .. -.+++|+.+ +.|.|++
T Consensus 103 g~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTa 169 (501)
T COG3845 103 GLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTA 169 (501)
T ss_pred cCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcc
Confidence 11 12345556666655544433 2222 22 267888887 4566753
No 179
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.40 E-value=4.7e-07 Score=91.69 Aligned_cols=42 Identities=31% Similarity=0.354 Sum_probs=36.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|+.++|+|+||||||||++.|++.+. +++|+| +.|.++..
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~-----p~~G~I~i~g~~i~~ 401 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFD-----PQSGRILIDGTDIRT 401 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEEhhh
Confidence 6788999999999999999999999887 888998 57776653
No 180
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.40 E-value=8.5e-07 Score=87.94 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=44.5
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.++.|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++.
T Consensus 4 l~~~~~~-~~il~~vs~-----~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 63 (491)
T PRK10982 4 ISKSFPG-VKALDNVNL-----KVRPHSIHALMGENGAGKSTLLKCLFGIYQ-----KDSGSILFQGKEID 63 (491)
T ss_pred eEEEeCC-EEeeeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCEECC
Confidence 4566754 345666655 224577899999999999999999998876 789998 5777664
No 181
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.40 E-value=1.1e-06 Score=87.51 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=44.1
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.++.|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++.
T Consensus 10 l~~~~~~-~~il~~isl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~ 69 (501)
T PRK11288 10 IGKTFPG-VKALDDISF-----DCRAGQVHALMGENGAGKSTLLKILSGNYQ-----PDAGSILIDGQEMR 69 (501)
T ss_pred eEEEECC-EEEEeeeeE-----EEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECC
Confidence 4556653 345666655 224577899999999999999999998876 789998 5776664
No 182
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=2e-07 Score=86.04 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=46.3
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|+.+...+.++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 10 ~l~~~~~~~~~~l~~vs~-----~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-----p~~G~i~i~g~~~~ 71 (283)
T PRK13636 10 ELNYNYSDGTHALKGINI-----NIKKGEVTAILGGNGAGKSTLFQNLNGILK-----PSSGRILFDGKPID 71 (283)
T ss_pred eEEEEeCCCCeeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCEECC
Confidence 356677644456666665 223567899999999999999999998876 889998 6777764
No 183
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.39 E-value=1.6e-06 Score=81.97 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=35.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+|++++|+|+||||||||++.|++.+...- ..+|+| |.|.++..
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~--~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLAANG--RIGGSATFNGREILN 85 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCC--CCCeEEEECCEECCc
Confidence 4678999999999999999999999886210 138888 68887764
No 184
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.39 E-value=3.9e-07 Score=80.36 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=36.1
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 63 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIE-----PASGSIKVNDQSHT 63 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcc
Confidence 335688999999999999999999998876 889998 5676654
No 185
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=2.6e-07 Score=84.71 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=45.3
Q ss_pred hcccCch-hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQ-QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~-~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+. +...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 13 l~~~~~~~~~~il~~isl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~ 74 (271)
T PRK13632 13 VSFSYPNSENNALKNVSF-----EINEGEYVAILGHNGSGKSTISKILTGLLK-----PQSGEIKIDGITIS 74 (271)
T ss_pred EEEEcCCCCccceeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecC
Confidence 4567763 3456666555 224577899999999999999999998876 789998 5776664
No 186
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=1.7e-06 Score=81.79 Aligned_cols=65 Identities=17% Similarity=0.118 Sum_probs=45.1
Q ss_pred hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|+.+ ...+.++++ .-.+|++++|+|+||||||||++.|++.+..+ -.+++|+| |.|.++..
T Consensus 9 l~~~y~~~~~~~~~l~~vsl-----~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-~~~~~G~i~~~g~~i~~ 77 (330)
T PRK15093 9 LTIEFKTSDGWVKAVDRVSM-----TLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDIDLLR 77 (330)
T ss_pred eEEEEeCCCCCEEEEeeeEE-----EECCCCEEEEECCCCCCHHHHHHHHHccCCCC-CCCcceEEEECCEECCc
Confidence 45667532 234555554 22467789999999999999999999886411 12578888 68877754
No 187
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.39 E-value=2.1e-06 Score=85.39 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=36.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 276 ~~Ge~~~liG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~g~~i~~ 318 (501)
T PRK10762 276 RKGEILGVSGLMGAGRTELMKVLYGALP-----RTSGYVTLDGHEVVT 318 (501)
T ss_pred cCCcEEEEecCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 6788999999999999999999998776 889999 67777654
No 188
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=2e-07 Score=83.45 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=44.5
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|+. ...+.++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++..
T Consensus 11 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~ 71 (237)
T PRK11614 11 VSAHYGK-IQALHEVSL-----HINQGEIVTLIGANGAGKTTLLGTLCGDPR-----ATSGRIVFDGKDITD 71 (237)
T ss_pred EEEeeCC-ceeeeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEecCC
Confidence 4556653 445666655 223577899999999999999999998876 788988 67766543
No 189
>PRK08233 hypothetical protein; Provisional
Probab=98.38 E-value=2.5e-06 Score=72.71 Aligned_cols=35 Identities=11% Similarity=0.337 Sum_probs=28.8
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCC-CeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIP-CEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~-~~iis~Ds 70 (298)
++.+|+|.|++|||||||+..|++.++ ..++..|.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 468999999999999999999999986 34554554
No 190
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.38 E-value=5.1e-07 Score=78.92 Aligned_cols=60 Identities=20% Similarity=0.124 Sum_probs=45.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~ 80 (298)
.+|.||.--+-+.|.++ .-++|++++|.||||+||||+++.||.++. +|+|.|+ .|.+..
T Consensus 7 l~K~y~~~v~AvrdVSF-----~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-----P~~G~v~idg~d~~ 67 (245)
T COG4555 7 LTKSYGSKVQAVRDVSF-----EAEEGEITGLLGENGAGKTTLLRMIATLLI-----PDSGKVTIDGVDTV 67 (245)
T ss_pred hhhhccCHHhhhhheeE-----EeccceEEEEEcCCCCCchhHHHHHHHhcc-----CCCceEEEeecccc
Confidence 46778762222333333 446789999999999999999999998776 9999996 777765
No 191
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.38 E-value=8.3e-07 Score=79.69 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=48.6
Q ss_pred HhhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 8 LDRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++-+||+|+.... ++|+++ .-++|++++++||||+||||+.+.|.+.+. +++|.| ++|.++..
T Consensus 5 ie~vtK~Fg~k~a-v~~isf-----~v~~G~i~GllG~NGAGKTTtfRmILglle-----~~~G~I~~~g~~~~~ 68 (300)
T COG4152 5 IEGVTKSFGDKKA-VDNISF-----EVPPGEIFGLLGPNGAGKTTTFRMILGLLE-----PTEGEITWNGGPLSQ 68 (300)
T ss_pred EecchhccCceee-ecceee-----eecCCeEEEeecCCCCCccchHHHHhccCC-----ccCceEEEcCcchhh
Confidence 3457788876543 555555 235577899999999999999999987766 999999 88877654
No 192
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.38 E-value=3e-07 Score=83.94 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=44.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.++ +++|.| +.|.++.
T Consensus 13 l~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~ 72 (265)
T PRK10253 13 LTLGYGK-YTVAENLTV-----EIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-----PAHGHVWLDGEHIQ 72 (265)
T ss_pred EEEEECC-EEEeeecce-----EECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEEhh
Confidence 4566764 345666655 224577899999999999999999998876 788888 5776654
No 193
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=4.5e-07 Score=81.00 Aligned_cols=41 Identities=32% Similarity=0.431 Sum_probs=35.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+|++++|+||||||||||++.|++.+. +++|.| +.|.++.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 64 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFLT-----PASGSLTLNGQDHT 64 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCeecC
Confidence 5688999999999999999999998876 788988 5776654
No 194
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.38 E-value=2.6e-06 Score=79.11 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=77.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHccccccccccc----------CcC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREITPHHLIDII----------EPT 103 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~v~~~l~~~~----------~~~ 103 (298)
..|++++|+|-||||||||.+++.++.. +++|+| +.|.++.. .+..++..++.+-+..+ +..
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrLie-----pt~G~ilv~g~di~~--~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl 124 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRLIE-----PTRGEILVDGKDIAK--LSAAELRELRRKKISMVFQSFALLPHRTVL 124 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhccCC-----CCCceEEECCcchhc--CCHHHHHHHHhhhhhhhhhhhccccchhHh
Confidence 7789999999999999999999976655 999999 78888874 34445544443322211 111
Q ss_pred c---------cchHHHHHHHHHHhhHHH----hhcCCceEEEchhH---HHHHHHHcc----CCCCC--CCCHHHHHHHH
Q psy8556 104 K---------SYSVIQFCEDALFSIKNI----LKKKKLPLLVGGTM---LYFKALRDG----INKLP--PANLKLRTKFN 161 (298)
Q Consensus 104 e---------~~s~~~f~~~~~~~i~~i----~~~~~~~IlvGGt~---~y~~~ll~~----~~~~p--~~d~~lr~~l~ 161 (298)
+ ..+..+-.+.+.+.++.. ++...+-=++||.. -..+|+..+ +.|.| .-||-+|.++.
T Consensus 125 ~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQ 204 (386)
T COG4175 125 ENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQ 204 (386)
T ss_pred hhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHH
Confidence 1 111222223333333221 12223335889987 367888866 23444 45888888887
Q ss_pred HHHHh
Q psy8556 162 IDINK 166 (298)
Q Consensus 162 ~~~~~ 166 (298)
+++-+
T Consensus 205 deLl~ 209 (386)
T COG4175 205 DELLE 209 (386)
T ss_pred HHHHH
Confidence 77654
No 195
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=3.2e-06 Score=76.35 Aligned_cols=63 Identities=16% Similarity=0.072 Sum_probs=42.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeec--CCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISI--DSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~--Ds~qv-y~g~~i~t 81 (298)
.+..|++ ..+++++++ .-.+|++++|+||||||||||++.|++..+ .+.+ ++|+| +.|.++..
T Consensus 9 ~~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 9 VNFWYGD-FHALKGISM-----EIEEKSVVAFIGPSGCGKSTFLRLFNRMND--LIPATRLEGEIRIDGRNIYD 74 (250)
T ss_pred EEEEECC-EeEEeeeeE-----EEeCCCEEEEECCCCCCHHHHHHHHhhhhc--ccCCCCCceEEEECCEeccc
Confidence 3455654 345555554 224577899999999999999999998632 1112 57888 67776643
No 196
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.38 E-value=8.9e-07 Score=78.89 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=44.7
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++..
T Consensus 6 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 6 LNVYYGQ-SHILRGVSL-----EVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIRLDGEDITK 66 (230)
T ss_pred EEEEeCC-eEEecceee-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCC
Confidence 4556764 345555555 224577899999999999999999998876 889998 57766543
No 197
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.38 E-value=4.5e-07 Score=80.64 Aligned_cols=64 Identities=17% Similarity=0.086 Sum_probs=43.9
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+....-.+++|+| +.|.++.
T Consensus 6 l~~~~~~-~~~l~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 70 (227)
T cd03260 6 LNVYYGD-KHALKDISL-----DIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY 70 (227)
T ss_pred EEEEcCC-ceeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhh
Confidence 3556654 345555554 22457789999999999999999999987100001788988 5776654
No 198
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.38 E-value=4.1e-07 Score=91.96 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=36.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|+.++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~-----p~~G~I~i~g~~i~~ 406 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWD-----PQQGEILLNGQPIAD 406 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEhhh
Confidence 5678899999999999999999999887 899999 57777654
No 199
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.37 E-value=3.6e-07 Score=81.71 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=35.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 51 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQ-----PTSGGVILEGKQITE 51 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence 5688999999999999999999998876 889998 57766643
No 200
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=3.8e-07 Score=84.42 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=46.2
Q ss_pred hhcccCchh----hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 10 RDTETDPQQ----RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 10 ~~~~~~~~~----~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
..+..|+.+ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.+
T Consensus 7 ~l~~~y~~~~~~~~~~l~~vs~-----~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (287)
T PRK13637 7 NLTHIYMEGTPFEKKALDNVNI-----EIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-----PTSGKIIIDGVDITD 73 (287)
T ss_pred EEEEECCCCCccccceeeeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEECCEECCC
Confidence 346677653 245555555 224577899999999999999999998876 889999 67877754
No 201
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=3e-07 Score=84.80 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=47.7
Q ss_pred hhhcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 9 DRDTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 9 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
...+..|++. ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++.+
T Consensus 9 ~~l~~~~~~~~~~~l~~vsl-----~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-----p~~G~i~~~g~~i~~ 73 (279)
T PRK13635 9 EHISFRYPDAATYALKDVSF-----SVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-----PEAGTITVGGMVLSE 73 (279)
T ss_pred EEEEEEeCCCCccceeeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence 3456677643 346666665 224577899999999999999999998876 889999 68877754
No 202
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.37 E-value=1.9e-07 Score=85.26 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=41.1
Q ss_pred hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 19 RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 19 ~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
...++++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 24 ~~il~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 77 (265)
T TIGR02769 24 APVLTNVSL-----SIEEGETVGLLGRSGCGKSTLARLLLGLEK-----PAQGTVSFRGQDLYQ 77 (265)
T ss_pred eEEeeCcee-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEccc
Confidence 345555555 224577899999999999999999998876 889999 67766653
No 203
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.37 E-value=2.5e-07 Score=84.08 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=43.7
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecccc
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMD 78 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~ 78 (298)
..+..|++ ..++.++++ .-++|++++|+||||||||||++.|++.+. +++|+| |.|.+
T Consensus 11 ~l~~~~~~-~~il~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~ 69 (258)
T PRK11701 11 GLTKLYGP-RKGCRDVSF-----DLYPGEVLGIVGESGSGKTTLLNALSARLA-----PDAGEVHYRMRD 69 (258)
T ss_pred eeEEEcCC-ceeeeeeeE-----EEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCcc
Confidence 34556654 345555554 224677999999999999999999998876 889998 67765
No 204
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=2.9e-07 Score=84.37 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=44.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++.
T Consensus 7 l~~~~~~-~~il~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~ 66 (271)
T PRK13638 7 LWFRYQD-EPVLKGLNL-----DFSLSPVTGLVGANGCGKSTLFMNLSGLLR-----PQKGAVLWQGKPLD 66 (271)
T ss_pred EEEEcCC-cccccceEE-----EEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCccEEEECCEEcc
Confidence 4566754 346666665 223467899999999999999999998876 889988 5776653
No 205
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.37 E-value=3.8e-07 Score=79.40 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=35.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
++|++++|+||||||||||++.|++.+. +++|.| +.|.++.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~ 65 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQ-----PSSGNIYYKNCNIN 65 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCcccC
Confidence 5688999999999999999999998876 788988 5676653
No 206
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.36 E-value=8.9e-07 Score=89.58 Aligned_cols=41 Identities=15% Similarity=0.348 Sum_probs=34.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|+.++|+||||||||||++.|++.+ +++|+| +.|.++..
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~------p~~G~I~i~g~~i~~ 415 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL------PYQGSLKINGIELRE 415 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC------CCCcEEEECCEeccc
Confidence 678899999999999999999998765 357888 57777753
No 207
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.36 E-value=2.6e-07 Score=81.71 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=44.1
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+..||.+..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 7 ~~~~~~~~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~ 66 (218)
T cd03290 7 YFSWGSGLATLSNINI-----RIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-----TLEGKVHWSNKNES 66 (218)
T ss_pred EEecCCCCcceeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCcccc
Confidence 4456655566666665 223467899999999999999999998876 788988 4565543
No 208
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=2.8e-07 Score=85.26 Aligned_cols=60 Identities=25% Similarity=0.235 Sum_probs=45.1
Q ss_pred hcccCchh----hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQ----RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~----~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+++ ...++++++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++.
T Consensus 8 l~~~y~~~~~~~~~~l~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~i~ 72 (286)
T PRK13646 8 VSYTYQKGTPYEHQAIHDVNT-----EFEQGKYYAIVGQTGSGKSTLIQNINALLK-----PTTGTVTVDDITIT 72 (286)
T ss_pred EEEEECCCCccccCceeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECc
Confidence 45667543 246666665 223567899999999999999999998776 888998 5777664
No 209
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.36 E-value=2.2e-06 Score=74.16 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=25.9
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEII 66 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~ii 66 (298)
|.+++|+||||||||||++.|++.++..++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 578999999999999999999998765443
No 210
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.36 E-value=3.2e-07 Score=81.14 Aligned_cols=60 Identities=23% Similarity=0.255 Sum_probs=44.5
Q ss_pred hcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+.+ ...+.++++ .-++|++++|+||||||||||++.|++... +++|+| +.|.++.
T Consensus 8 l~~~~~~~~~~~l~~i~~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 69 (221)
T cd03244 8 VSLRYRPNLPPVLKNISF-----SIKPGEKVGIVGRTGSGKSSLLLALFRLVE-----LSSGSILIDGVDIS 69 (221)
T ss_pred EEEecCCCCcccccceEE-----EECCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhH
Confidence 45667654 356666665 224567899999999999999999998876 788888 5665543
No 211
>PLN03232 ABC transporter C family member; Provisional
Probab=98.36 E-value=8.3e-07 Score=98.66 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=72.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH--HHHcccccc--cc-----cccCcCc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI--IEREITPHH--LI-----DIIEPTK 104 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~--~e~~~v~~~--l~-----~~~~~~e 104 (298)
++|+.++|+|+||||||||++.|.+.+. +++|+| ..|.++.+-.+.. ..+..+|+. ++ +.+++..
T Consensus 1260 ~~GekvaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~ 1334 (1495)
T PLN03232 1260 SPSEKVGVVGRTGAGKSSMLNALFRIVE-----LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS 1334 (1495)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC
Confidence 5778899999999999999999998877 899999 5888886433211 223344543 11 1123333
Q ss_pred cchHHHHHHHHH-----HhhHHHhhcCCceEEEchhH---------HHHHHHHcc----CCCCCC--CCHHHHHHHHHHH
Q psy8556 105 SYSVIQFCEDAL-----FSIKNILKKKKLPLLVGGTM---------LYFKALRDG----INKLPP--ANLKLRTKFNIDI 164 (298)
Q Consensus 105 ~~s~~~f~~~~~-----~~i~~i~~~~~~~IlvGGt~---------~y~~~ll~~----~~~~p~--~d~~lr~~l~~~~ 164 (298)
.++-.+..+.+. +.+......-+.+|-.+|.. ...++++.+ +.|.|+ .|.+..+.+.+.+
T Consensus 1335 ~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L 1414 (1495)
T PLN03232 1335 EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTI 1414 (1495)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 344333222221 12333222334455444443 356888876 345554 3666555554444
Q ss_pred H
Q psy8556 165 N 165 (298)
Q Consensus 165 ~ 165 (298)
.
T Consensus 1415 ~ 1415 (1495)
T PLN03232 1415 R 1415 (1495)
T ss_pred H
Confidence 3
No 212
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=2.4e-07 Score=84.82 Aligned_cols=61 Identities=18% Similarity=0.141 Sum_probs=45.1
Q ss_pred hhcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|++. ...+.+++. .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 12 ~l~~~~~~~~~~~l~~isl-----~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~ 74 (269)
T PRK13648 12 NVSFQYQSDASFTLKDVSF-----NIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-----VKSGEIFYNNQAIT 74 (269)
T ss_pred EEEEEcCCCCCcceeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence 345667653 235555554 224577899999999999999999998876 789999 5776654
No 213
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.36 E-value=1.3e-06 Score=90.14 Aligned_cols=42 Identities=29% Similarity=0.262 Sum_probs=37.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|+.++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQ-----PTEGSVLLDGVDIRQ 531 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEhhh
Confidence 6788999999999999999999999887 889999 57777653
No 214
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.35 E-value=2.3e-07 Score=83.20 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=43.7
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|++ ...+.++++ .-++|++++|+||||||||||++.|++.+. ..+++|+| +.|.++.
T Consensus 5 ~l~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 5 DLHVSVED-KEILKGVNL-----TVKKGEIHAIMGPNGSGKSTLSKTIAGHPS---YEVTSGTILFKGQDLL 67 (243)
T ss_pred eEEEEECC-EEEEeccce-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCcceEEECCEecC
Confidence 34566764 345555554 224577899999999999999999998741 12688888 5666654
No 215
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.35 E-value=2.6e-07 Score=84.57 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=40.1
Q ss_pred hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 20 QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 20 ~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 27 ~~l~~vsl-----~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 78 (267)
T PRK15112 27 EAVKPLSF-----TLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGELLIDDHPLH 78 (267)
T ss_pred ceeeeeeE-----EecCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECC
Confidence 45566555 224577899999999999999999998876 889998 6776654
No 216
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.35 E-value=4.2e-07 Score=80.94 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=44.0
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ..++.++++ .-++|++++|+||||||||||++.|++... +++|+| +.|.++..
T Consensus 13 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 73 (225)
T PRK10247 13 VGYLAGD-AKILNNISF-----SLRAGEFKLITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDIST 73 (225)
T ss_pred cEEeeCC-ceeeeccEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEcCc
Confidence 3455653 345555555 224677999999999999999999998766 889999 56666543
No 217
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=3.1e-07 Score=84.96 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=44.5
Q ss_pred hcccCchhh----hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQR----QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~----~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+... ..+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 12 l~~~~~~~~~~~~~il~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~ 76 (289)
T PRK13645 12 VSYTYAKKTPFEFKALNNTSL-----TFKKNKVTCVIGTTGSGKSTMIQLTNGLII-----SETGQTIVGDYAIP 76 (289)
T ss_pred EEEEeCCCCccccceeeeeEE-----EEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcc
Confidence 456676542 35666555 224577899999999999999999998876 788998 5676653
No 218
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.35 E-value=4.2e-07 Score=79.72 Aligned_cols=59 Identities=22% Similarity=0.186 Sum_probs=43.6
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.++.|++ ...+.++++ .-++|++++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 7 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~v~~~g~~~~ 66 (204)
T PRK13538 7 LACERDE-RILFSGLSF-----TLNAGELVQIEGPNGAGKTSLLRILAGLAR-----PDAGEVLWQGEPIR 66 (204)
T ss_pred EEEEECC-EEEEecceE-----EECCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcc
Confidence 3455653 345555544 224677999999999999999999998877 889998 5676654
No 219
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.35 E-value=3.7e-07 Score=80.68 Aligned_cols=60 Identities=25% Similarity=0.206 Sum_probs=44.0
Q ss_pred hcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+.+ ..++.++++ .-.+|++++|+||||||||||++.|++..+ +++|+| +.|.++.
T Consensus 8 l~~~~~~~~~~~l~~i~~-----~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~ 69 (220)
T cd03245 8 VSFSYPNQEIPALDNVSL-----TIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-----PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEcCCCCcccccceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCeEEECCEEhH
Confidence 45567543 345666555 224577899999999999999999998765 788888 5666553
No 220
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.34 E-value=3e-07 Score=84.95 Aligned_cols=64 Identities=19% Similarity=0.114 Sum_probs=47.9
Q ss_pred hhhcccCchh-h---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 9 DRDTETDPQQ-R---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 9 ~~~~~~~~~~-~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
..++|+|++. . ..+++.++ . =++|++++|+|.||+|||||.+++..+-. +++|+| +.|.++...
T Consensus 5 ~~vsK~~~~~~~~~~~al~~vsL---~--I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-----PtsG~v~v~G~di~~l 73 (339)
T COG1135 5 ENVSKTFGQTGTGTVTALDDVSL---E--IPKGEIFGIIGYSGAGKSTLLRLINLLER-----PTSGSVFVDGQDLTAL 73 (339)
T ss_pred EeeeeeeccCCCCceeeeccceE---E--EcCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEEcCEecccC
Confidence 3567889874 2 33444444 2 25677999999999999999999976655 999999 788887753
No 221
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=2.7e-07 Score=85.39 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=46.3
Q ss_pred hhcccCchh----hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQ----RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~----~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..++.|+.+ ...+.++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 7 ~l~~~~~~~~~~~~~~l~~vsl-----~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 72 (287)
T PRK13641 7 NVDYIYSPGTPMEKKGLDNISF-----ELEEGSFVALVGHTGSGKSTLMQHFNALLK-----PSSGTITIAGYHIT 72 (287)
T ss_pred EEEEEcCCCCCccccceeeeEE-----EEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECc
Confidence 456778642 346666665 224577899999999999999999998876 899999 5777664
No 222
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.34 E-value=4.6e-07 Score=77.98 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=43.6
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+. ..++.+++. .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 5 l~~~~~~-~~~l~~~~~-----~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-----~~~G~v~~~g~~~~ 64 (180)
T cd03214 5 LSVGYGG-RTVLDDLSL-----SIEAGEIVGILGPNGAGKSTLLKTLAGLLK-----PSSGEILLDGKDLA 64 (180)
T ss_pred EEEEECC-eeeEeeeEE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECC
Confidence 3556654 334555444 224678999999999999999999998776 889999 5776664
No 223
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.34 E-value=3e-07 Score=80.49 Aligned_cols=57 Identities=25% Similarity=0.115 Sum_probs=42.4
Q ss_pred hhcccCchhh----hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-cc
Q psy8556 10 RDTETDPQQR----QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CD 76 (298)
Q Consensus 10 ~~~~~~~~~~----~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g 76 (298)
..+..|+.+. .++.++++ .-++|++++|+||||||||||++.|++..+ +++|+|+ .|
T Consensus 5 ~l~~~~~~~~~~~~~il~~~s~-----~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-----~~~G~i~~~g 66 (204)
T cd03250 5 DASFTWDSGEQETSFTLKDINL-----EVPKGELVAIVGPVGSGKSSLLSALLGELE-----KLSGSVSVPG 66 (204)
T ss_pred EEEEecCCCCccccceeeeeeE-----EECCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCCeEEEcC
Confidence 3456676542 46666555 224567899999999999999999998876 7888884 44
No 224
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.34 E-value=2.8e-07 Score=73.53 Aligned_cols=32 Identities=38% Similarity=0.614 Sum_probs=29.7
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+|+|+||+||||||+++.|++.++..+++.|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 58999999999999999999999988888886
No 225
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.34 E-value=2.1e-07 Score=75.83 Aligned_cols=42 Identities=33% Similarity=0.459 Sum_probs=35.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|++++|+||||||||||++.|++... +++|.| +.+.++..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~-----~~~G~i~~~~~~~~~ 51 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLP-----PDSGSILINGKDISD 51 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSH-----ESEEEEEETTEEGTT
T ss_pred cCCCEEEEEccCCCccccceeeeccccc-----ccccccccccccccc
Confidence 5678999999999999999999998876 688888 57777654
No 226
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.34 E-value=8.8e-07 Score=79.89 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=43.1
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC-----CceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID-----SALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D-----s~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-++|++++|+||||||||||++.|++.+. ++ +|+| +.|.++.
T Consensus 7 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 7 LNLFYGE-KEALKNINL-----DIPKNQVTALIGPSGCGKSTLLRSLNRMND-----LVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred EEEEECC-eeeecceeE-----EECCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceEEEECCEEcc
Confidence 3456654 234555544 224578999999999999999999998876 66 8888 5777664
No 227
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.34 E-value=8.2e-07 Score=89.12 Aligned_cols=42 Identities=33% Similarity=0.393 Sum_probs=36.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|+.++|+||||||||||++.|++.++ +++|+| +.|.++..
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGIWP-----PTSGSVRLDGADLKQ 384 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEehhh
Confidence 5788999999999999999999999887 888988 57777653
No 228
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.34 E-value=3.6e-07 Score=81.43 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=33.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
.+|++++|+||||||||||++.|++.+. +++|.| +.|.++
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~ 86 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIYP-----PDSGTVTVRGRVS 86 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEc
Confidence 5677999999999999999999998765 788888 455443
No 229
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.33 E-value=3e-07 Score=84.22 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=45.5
Q ss_pred hhcccCch--------hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQ--------QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.++..|+. +..++.|+++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 8 nl~~~~~~~~~~~~~~~~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~sG~i~~~g~~~~ 77 (268)
T PRK10419 8 GLSHHYAHGGLSGKHQHQTVLNNVSL-----SLKSGETVALLGRSGCGKSTLARLLVGLES-----PSQGNVSWRGEPLA 77 (268)
T ss_pred ceEEEecCCccccccCceeeEeceeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecc
Confidence 34566763 2445555555 224577899999999999999999998766 789998 5776654
Q ss_pred C
Q psy8556 81 T 81 (298)
Q Consensus 81 t 81 (298)
.
T Consensus 78 ~ 78 (268)
T PRK10419 78 K 78 (268)
T ss_pred c
Confidence 3
No 230
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.33 E-value=3.6e-07 Score=84.66 Aligned_cols=60 Identities=23% Similarity=0.202 Sum_probs=45.9
Q ss_pred hcccCchh----hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQ----RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~----~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+.+ ...+.|+++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++.
T Consensus 8 l~~~y~~~~~~~~~~L~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~ 72 (290)
T PRK13634 8 VEHRYQYKTPFERRALYDVNV-----SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-----PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEECCCCcccccceeeEEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECc
Confidence 45677643 346666665 224567899999999999999999998876 889998 6777764
No 231
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=4.4e-07 Score=81.67 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=44.1
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 9 l~~~~~~-~~~l~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~ 68 (241)
T PRK14250 9 VSYSSFG-KEILKDISV-----KFEGGAIYTIVGPSGAGKSTLIKLINRLID-----PTEGSILIDGVDIK 68 (241)
T ss_pred EEEEeCC-eeeeeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhh
Confidence 4556654 345566555 224577899999999999999999998776 789998 6776664
No 232
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.33 E-value=1.3e-06 Score=90.43 Aligned_cols=42 Identities=26% Similarity=0.329 Sum_probs=37.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|+.++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~idg~~i~~ 547 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQ-----PTGGQVLLDGVPLVQ 547 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCEEEECCEEHHh
Confidence 6788999999999999999999999887 889999 57777653
No 233
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=5.1e-06 Score=75.67 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=41.5
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCC--eEeecCCceE-eccccC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPC--EIISIDSALV-YCDMDI 79 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~--~iis~Ds~qv-y~g~~i 79 (298)
.+..|++ ...+.|+++ .-++|++++|+||||||||||++.|++.++. ++ ..+|+| +.|.++
T Consensus 13 l~~~~~~-~~il~~is~-----~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i--~~~G~i~~~g~~i 76 (261)
T PRK14258 13 LSFYYDT-QKILEGVSM-----EIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEV--RVEGRVEFFNQNI 76 (261)
T ss_pred EEEEeCC-eeEeeceEE-----EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCc--cccceEEECCEEh
Confidence 3455643 234555544 3356789999999999999999999988751 11 136777 566655
No 234
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.32 E-value=4.6e-07 Score=81.17 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=44.2
Q ss_pred hcccCchh--hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQ--RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~--~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+.+ ...+.++++ .-++|++++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 6 l~~~~~~~~~~~~l~~i~~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~ 68 (238)
T cd03249 6 VSFRYPSRPDVPILKGLSL-----TIPPGKTVALVGSSGCGKSTVVSLLERFYD-----PTSGEILLDGVDIR 68 (238)
T ss_pred EEEecCCCCCccceeceEE-----EecCCCEEEEEeCCCCCHHHHHHHHhccCC-----CCCCEEEECCEehh
Confidence 45567542 235555554 224678999999999999999999998876 889998 5776554
No 235
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.32 E-value=5.3e-07 Score=78.63 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=42.5
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+..|++ ...++++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 7 ~~~~~~-~~~l~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 65 (198)
T TIGR01189 7 ACSRGE-RMLFEGLSF-----TLNAGEALQVTGPNGIGKTTLLRILAGLLR-----PDSGEVRWNGTALA 65 (198)
T ss_pred EEEECC-EEEEeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEcc
Confidence 445543 345555554 224577899999999999999999998876 788988 5666654
No 236
>KOG3354|consensus
Probab=98.32 E-value=2.4e-06 Score=71.67 Aligned_cols=137 Identities=18% Similarity=0.246 Sum_probs=79.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCH---HHHcccccccccccCcCccchHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSI---IEREITPHHLIDIIEPTKSYSVIQF 111 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~---~e~~~v~~~l~~~~~~~e~~s~~~f 111 (298)
+-+.+++|+|++||||||+++.|+..++...+..|.. +|.+ .-.+++| ++-.+.+ .|
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~-----------Hp~~NveKM~~Gip------LnD~DR~---pW 69 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDL-----------HPPANVEKMTQGIP------LNDDDRW---PW 69 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccC-----------CCHHHHHHHhcCCC------CCccccc---HH
Confidence 3455899999999999999999999999777766651 1211 1122232 1112223 25
Q ss_pred HHHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC------
Q psy8556 112 CEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN------ 185 (298)
Q Consensus 112 ~~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~------ 185 (298)
.......+..-...++..|+. ++.+ +++.++.+.. -|+.-.|....
T Consensus 70 L~~i~~~~~~~l~~~q~vVlA-CSaL-------------------Kk~YRdILr~--------sl~~gk~~~~~~~~l~f 121 (191)
T KOG3354|consen 70 LKKIAVELRKALASGQGVVLA-CSAL-------------------KKKYRDILRH--------SLKDGKPGKCPESQLHF 121 (191)
T ss_pred HHHHHHHHHHHhhcCCeEEEE-hHHH-------------------HHHHHHHHHh--------hcccCCccCCccceEEE
Confidence 544433333333456665553 2222 2222222111 11111111100
Q ss_pred --CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Q psy8556 186 --QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKK 220 (298)
Q Consensus 186 --~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~ 220 (298)
+..+++++-+|+..|-.+.+..- |++---+.++.
T Consensus 122 i~l~~s~evi~~Rl~~R~gHFMp~~-lleSQf~~LE~ 157 (191)
T KOG3354|consen 122 ILLSASFEVILKRLKKRKGHFMPAD-LLESQFATLEA 157 (191)
T ss_pred eeeeccHHHHHHHHhhcccccCCHH-HHHHHHHhccC
Confidence 45689999999999999999998 88888777766
No 237
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.32 E-value=3.5e-06 Score=83.78 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=35.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+|++++|+||||||||||++.|++.++ +++|+| |.|.++.
T Consensus 277 ~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~g~~~~ 318 (501)
T PRK11288 277 RAGEIVGLFGLVGAGRSELMKLLYGATR-----RTAGQVYLDGKPID 318 (501)
T ss_pred eCCcEEEEEcCCCCCHHHHHHHHcCCCc-----CCCceEEECCEECC
Confidence 6788999999999999999999998876 789998 5676654
No 238
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.31 E-value=7.4e-07 Score=77.04 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=57.6
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccch---------
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYS--------- 107 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s--------- 107 (298)
+.+++|+||+||||+|++..|....+ +. +..-...+|..|.+.|..+..+++++...+.....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~------~~--~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~ 73 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIP------DA--FERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGE 73 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCC------cc--eEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEE
Confidence 56899999999999999999988764 11 33334556777777787787777655322111000
Q ss_pred -HHHHHHHHHHhhHHHhhcCCceEEEch
Q psy8556 108 -VIQFCEDALFSIKNILKKKKLPLLVGG 134 (298)
Q Consensus 108 -~~~f~~~~~~~i~~i~~~~~~~IlvGG 134 (298)
.+.++......+.+....++.+|+.+.
T Consensus 74 ~~g~~YGt~~~~i~~~~~~~~~~ild~~ 101 (184)
T smart00072 74 YSGNYYGTSKETIRQVAEQGKHCLLDID 101 (184)
T ss_pred EcCcCcccCHHHHHHHHHcCCeEEEEEC
Confidence 122333344556677777888877654
No 239
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.31 E-value=6.7e-06 Score=74.77 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=42.1
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+. ...+.+++. .-.+|++++|+|+||||||||++.|++.++..--..++|+| +.|.++.
T Consensus 13 l~~~~~~-~~il~~isl-----~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 13 LSFYYNT-SKAIEGISM-----DIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred EEEEECC-eEeecceEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecc
Confidence 3455643 234455444 22467899999999999999999999976521000157888 5666653
No 240
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.31 E-value=5.5e-07 Score=79.19 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=42.9
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
.++.|++ ...+.++++ .-++|++++|+||||||||||++.|++... +++|+| |.|.++
T Consensus 8 l~~~~~~-~~~l~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~ 66 (207)
T PRK13539 8 LACVRGG-RVLFSGLSF-----TLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGDI 66 (207)
T ss_pred EEEEECC-eEEEeceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEeC
Confidence 4556654 345555554 224577899999999999999999998876 788988 566554
No 241
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.31 E-value=4.5e-06 Score=80.44 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=33.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM 77 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~ 77 (298)
++|++++|+||||||||||+++|++.+. +++|+| +.|.
T Consensus 48 ~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-----p~~G~I~idG~ 86 (382)
T TIGR03415 48 EEGEICVLMGLSGSGKSSLLRAVNGLNP-----VSRGSVLVKDG 86 (382)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCE
Confidence 5688999999999999999999998876 889999 4553
No 242
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.1e-06 Score=75.90 Aligned_cols=55 Identities=24% Similarity=0.331 Sum_probs=41.4
Q ss_pred hhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCC
Q psy8556 17 QQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGT 81 (298)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t 81 (298)
+++.+..++++ +-..|+.+.|.||||||||||++.||+++. +++|+|| ++..+.+
T Consensus 13 ~e~~lf~~L~f-----~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-----p~~G~v~~~~~~i~~ 68 (209)
T COG4133 13 GERTLFSDLSF-----TLNAGEALQITGPNGAGKTTLLRILAGLLR-----PDAGEVYWQGEPIQN 68 (209)
T ss_pred CcceeecceeE-----EEcCCCEEEEECCCCCcHHHHHHHHHcccC-----CCCCeEEecCCCCcc
Confidence 34444444544 334466899999999999999999999888 9999994 6666553
No 243
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=4.7e-07 Score=83.84 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=44.7
Q ss_pred hcccCchhh----hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQR----QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~----~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+.+. ..+.++++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++.
T Consensus 7 v~~~y~~~~~~~~~~l~~vsl-----~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~ 71 (288)
T PRK13643 7 VNYTYQPNSPFASRALFDIDL-----EVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-----PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEeCCCCcccccceeeeEE-----EEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEECc
Confidence 456676432 35555555 224577899999999999999999998876 889999 5777764
No 244
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.30 E-value=1.5e-06 Score=78.88 Aligned_cols=64 Identities=16% Similarity=0.044 Sum_probs=43.2
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+....-.+++|+| +.|.++.
T Consensus 10 v~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~ 74 (258)
T PRK14241 10 LNIYYGS-FHAVEDVNL-----NIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLY 74 (258)
T ss_pred EEEEECC-EeeeeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecc
Confidence 4556654 345555554 22457799999999999999999999876410001368888 5776653
No 245
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.30 E-value=5.7e-07 Score=80.51 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=44.0
Q ss_pred hcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+.+ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 6 l~~~~~~~~~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 67 (237)
T cd03252 6 VRFRYKPDGPVILDNISL-----RIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-----PENGRVLVDGHDLA 67 (237)
T ss_pred EEEecCCCCccceeceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCeehH
Confidence 35566542 345555544 224677999999999999999999998876 788988 5776554
No 246
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=6.1e-06 Score=75.83 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=34.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+|++++|+||||||||||++.|++.++...-.+++|+| +.|.++.
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 567899999999999999999999876411101257888 5776664
No 247
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.29 E-value=1.3e-06 Score=88.10 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=36.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 366 ~~G~~~aivG~sGsGKSTl~~ll~g~~~-----p~~G~i~~~g~~i~~ 408 (555)
T TIGR01194 366 AQGDIVFIVGENGCGKSTLAKLFCGLYI-----PQEGEILLDGAAVSA 408 (555)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 6788999999999999999999998887 899999 57777653
No 248
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.29 E-value=7.4e-07 Score=77.77 Aligned_cols=62 Identities=16% Similarity=0.282 Sum_probs=46.8
Q ss_pred hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
..++|.|..+- .+++.+. . -++|.+..|+||||+|||||+..++++++ .|+|.| ++|.++++
T Consensus 5 ~nv~K~y~~~~-vl~~isl---~--i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-----~d~G~i~i~g~~~~~ 67 (252)
T COG4604 5 ENVSKSYGTKV-VLDDVSL---D--IPKGGITSIIGPNGAGKSTLLSMMSRLLK-----KDSGEITIDGLELTS 67 (252)
T ss_pred hhhhHhhCCEE-eecccee---e--ecCCceeEEECCCCccHHHHHHHHHHhcc-----ccCceEEEeeeeccc
Confidence 34566675543 2333333 2 25677999999999999999999999888 999999 58888864
No 249
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.29 E-value=9.8e-07 Score=78.90 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=43.1
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
+..|++ ..++.+++. .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++..
T Consensus 7 ~~~~~~-~~il~~i~~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~ 66 (232)
T cd03300 7 SKFYGG-FVALDGVSL-----DIKEGEFFTLLGPSGCGKTTLLRLIAGFET-----PTSGEILLDGKDITN 66 (232)
T ss_pred EEEeCC-eeeeccceE-----EECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc
Confidence 445553 245555544 224678999999999999999999998876 788888 56766643
No 250
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.29 E-value=5.3e-07 Score=89.62 Aligned_cols=60 Identities=13% Similarity=0.204 Sum_probs=45.2
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..++.|++ ...++++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 9 ~l~~~~~~-~~~l~~is~-----~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~ 69 (501)
T PRK10762 9 GIDKAFPG-VKALSGAAL-----NVYPGRVMALVGENGAGKSTMMKVLTGIYT-----RDAGSILYLGKEVT 69 (501)
T ss_pred eeEEEeCC-eEEeeeeeE-----EEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECC
Confidence 34566754 346666665 123577899999999999999999998876 889998 5776664
No 251
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.29 E-value=6.6e-07 Score=79.07 Aligned_cols=60 Identities=7% Similarity=0.073 Sum_probs=44.4
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 16 ~l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~i~ 76 (214)
T PRK13543 16 ALAFSRNE-EPVFGPLDF-----HVDAGEALLVQGDNGAGKTTLLRVLAGLLH-----VESGQIQIDGKTAT 76 (214)
T ss_pred eEEEecCC-ceeeecceE-----EECCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCeeEEECCEEcc
Confidence 34555654 335555554 224677899999999999999999998876 888998 6776664
No 252
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=1.5e-06 Score=78.65 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=43.6
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+...-..+++|+| +.|.++.
T Consensus 10 l~~~~~~-~~~l~~is~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 10 LRVYYGS-NHVIKGVDL-----KIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred EEEEeCC-eeeeecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 4556654 345555554 22457789999999999999999999876510001258988 5777664
No 253
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.28 E-value=6.5e-07 Score=80.77 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=43.9
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++.
T Consensus 9 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 68 (250)
T PRK11264 9 LVKKFHG-QTVLHGIDL-----EVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-----PEAGTIRVGDITID 68 (250)
T ss_pred eEEEECC-eeeeccceE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcc
Confidence 3556654 345666555 224577899999999999999999998776 788988 5666654
No 254
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.28 E-value=7.4e-07 Score=79.34 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=34.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
++|++++|+||||||||||++.|++.+. +++|+| +.|.++
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~ 44 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIP-----PAKGTVKVAGASP 44 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCccc
Confidence 4688999999999999999999998776 788888 566543
No 255
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.28 E-value=1.6e-06 Score=78.45 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=43.3
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ...++++++ .-.+|++++|+||||||||||++.|++........+++|+| +.|.++..
T Consensus 10 l~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 10 LNLWYGE-KQALNDINL-----PIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred eEEEECC-eeeeeceeE-----EEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 3455653 345555554 22467899999999999999999999876410000267888 57776643
No 256
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.28 E-value=6.6e-07 Score=79.92 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=35.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
++|++++|+||||||||||++.|++.+... ..+++|+| +.|.++.
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~~~~~G~i~~~g~~~~ 55 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLPPG-LTQTSGEILLDGRPLL 55 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCc-cCccccEEEECCEech
Confidence 568899999999999999999999887611 11289999 5776654
No 257
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.28 E-value=4.7e-07 Score=81.69 Aligned_cols=64 Identities=17% Similarity=0.114 Sum_probs=45.1
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
..+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+.. ..+++|+| +.|.++..
T Consensus 7 ~l~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~~~~G~i~~~g~~i~~ 71 (246)
T PRK14269 7 NLNLFYGK-KQALFDINM-----QIEQNKITALIGASGCGKSTFLRCFNRMNDK--IAKIDGLVEIEGKDVKN 71 (246)
T ss_pred eeEEEECC-EeeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCCceEEEECCEeccc
Confidence 34667764 355566555 2235778999999999999999999987531 12578888 57777653
No 258
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.28 E-value=1.5e-06 Score=87.59 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=36.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
++|+.++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~-----p~~G~I~i~g~~i~ 405 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYD-----PQSGRILLDGVDLR 405 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCEEEECCEEHH
Confidence 7889999999999999999999999887 788998 5777665
No 259
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.27 E-value=9e-07 Score=75.69 Aligned_cols=64 Identities=22% Similarity=0.160 Sum_probs=46.4
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~ 80 (298)
..+++-+++...++=++-+.... ++|+.++|+||||||||||+..||++-. ++||+|+ .|.+..
T Consensus 11 ~l~ktvg~~~~~l~IL~~V~L~v--~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-----~ssGeV~l~G~~L~ 75 (228)
T COG4181 11 HLSKTVGQGEGELSILKGVELVV--KRGETVAIVGPSGSGKSTLLAVLAGLDD-----PSSGEVRLLGQPLH 75 (228)
T ss_pred hhhhhhcCCCcceeEeecceEEe--cCCceEEEEcCCCCcHHhHHHHHhcCCC-----CCCceEEEcCcchh
Confidence 34566666665444444433222 5678899999999999999999998876 8999995 666654
No 260
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=1.7e-06 Score=78.25 Aligned_cols=64 Identities=20% Similarity=0.135 Sum_probs=43.1
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+. ...+.|+++ .-.+|++++|+||||||||||++.|++.+......+++|.| +.|.++.
T Consensus 10 l~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~ 74 (252)
T PRK14256 10 LNVHFGK-NHAVKDVSM-----DFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIY 74 (252)
T ss_pred EEEEeCC-eeEEecceE-----EEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcc
Confidence 3556653 346666655 22457789999999999999999999876310001257877 5776664
No 261
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.27 E-value=6.9e-07 Score=80.81 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=43.7
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 6 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 6 VTKRFGI-LTVLDGLNF-----SVAAGEKVALIGPSGSGKSTILRILMTLEP-----IDEGQIQVEGEQLY 65 (252)
T ss_pred EEEEeCC-eeEEeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcc
Confidence 4556653 345555554 224677899999999999999999998776 789988 5776653
No 262
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.27 E-value=2.1e-06 Score=95.69 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=37.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
++|+.++|+|+||||||||++.|.+.+. +++|+| ..|.++.+-
T Consensus 1310 ~~GekiaIVGrTGsGKSTL~~lL~rl~~-----~~~G~I~IdG~dI~~i 1353 (1522)
T TIGR00957 1310 HGGEKVGIVGRTGAGKSSLTLGLFRINE-----SAEGEIIIDGLNIAKI 1353 (1522)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcc-----CCCCeEEECCEEcccc
Confidence 5678899999999999999999998877 889999 688888643
No 263
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.27 E-value=1.5e-06 Score=78.77 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=44.1
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.++ +++|.| +.|.++.
T Consensus 7 l~~~~~~-~~il~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 7 VSWSAGG-RLIVDGVDV-----TAPPGSLTGLLGPNGSGKSTLLRLLAGALR-----PDAGTVDLAGVDLH 66 (256)
T ss_pred EEEEECC-EEEEeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEEcc
Confidence 3556654 346666655 224577999999999999999999998876 788988 5676654
No 264
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=1e-06 Score=79.79 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=42.9
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..+++++++ .-.+|++++|+||||||||||++.|++.+...--.+++|+| +.|.++.
T Consensus 13 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 13 LNLFYTD-FKALNNINI-----KILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred eEEEeCC-ceeecceee-----EEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 3455653 345566555 22457789999999999999999999877511000257888 5676654
No 265
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=6.1e-07 Score=83.86 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=42.5
Q ss_pred hcccCchhh----hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecccc
Q psy8556 11 DTETDPQQR----QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMD 78 (298)
Q Consensus 11 ~~~~~~~~~----~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~ 78 (298)
.+..|+++. ..+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.+
T Consensus 8 l~~~y~~~~~~~~~~l~~vsl-----~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~ 70 (305)
T PRK13651 8 IVKIFNKKLPTELKALDNVSV-----EINQGEFIAIIGQTGSGKTTFIEHLNALLL-----PDTGTIEWIFKD 70 (305)
T ss_pred EEEEECCCCCccccceeeeEE-----EEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEEecee
Confidence 456676532 35666555 224577899999999999999999998876 788888 45443
No 266
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.27 E-value=8.3e-07 Score=78.86 Aligned_cols=60 Identities=23% Similarity=0.272 Sum_probs=43.7
Q ss_pred hcccCchh--hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQ--RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~--~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++. ...+.+++. .-++|++++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 17 l~~~~~~~~~~~~l~~is~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 79 (226)
T cd03248 17 VTFAYPTRPDTLVLQDVSF-----TLHPGEVTALVGPSGSGKSTVVALLENFYQ-----PQGGQVLLDGKPIS 79 (226)
T ss_pred EEEEeCCCCCCccccceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCCchH
Confidence 35566542 245555554 224577899999999999999999998876 788988 5665553
No 267
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.27 E-value=7.4e-07 Score=79.53 Aligned_cols=59 Identities=25% Similarity=0.335 Sum_probs=43.5
Q ss_pred cccCchhh-hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 12 TETDPQQR-QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 12 ~~~~~~~~-~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+..|++.+ ..+.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 7 ~~~~~~~~~~~l~~i~~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 67 (234)
T cd03251 7 TFRYPGDGPPVLRDISL-----DIPAGETVALVGPSGSGKSTLVNLIPRFYD-----VDSGRILIDGHDVR 67 (234)
T ss_pred EEEeCCCCccceeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccc-----CCCCEEEECCEEhh
Confidence 45565442 45556555 224577899999999999999999998876 789998 5676554
No 268
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.27 E-value=6e-06 Score=84.38 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=36.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+|++++|+||||||||||++.|++.+. +++|+| |.|.++..
T Consensus 348 ~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-----p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 348 WPGETLSLVGESGSGKSTTGRALLRLVE-----SQGGEIIFNGQRIDT 390 (623)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCcEEEECCEECCc
Confidence 5688999999999999999999998876 889999 67777653
No 269
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.27 E-value=6e-07 Score=79.57 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=44.0
Q ss_pred hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCC
Q psy8556 11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~ 80 (298)
.+..|+.+ ..++.++++ .-.+|++++|+||||||||||++.|++.++ +++|+|+ .|.++.
T Consensus 7 l~~~~~~~~~~~~il~~vs~-----~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 7 LNHYYGHGSLRKQVLFDINL-----EINPGEIVILTGPSGSGKTTLLTLIGGLRS-----VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEccCCCcceeEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEhH
Confidence 35566543 345555554 224577899999999999999999998776 8899984 666654
No 270
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.26 E-value=4.3e-06 Score=83.51 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=35.5
Q ss_pred hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 20 QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 20 ~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
..+.++++ .-.+|++++|+||||||||||++.|++.++ +++|.|+
T Consensus 298 ~il~~is~-----~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~ 342 (520)
T TIGR03269 298 KAVDNVSL-----EVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-----PTSGEVN 342 (520)
T ss_pred eEEeeEEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEE
Confidence 34555554 224577899999999999999999998876 7889985
No 271
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.26 E-value=7.8e-07 Score=80.94 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=39.4
Q ss_pred ccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 31 GKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 31 ~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
+..-++|++++|+|.|||||||+++.|.++.. +++|+| |+|.++..
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-----pt~G~i~f~g~~i~~ 79 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEE-----PTSGEILFEGKDITK 79 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-----CCCceEEEcCcchhh
Confidence 33447788999999999999999999998887 899999 68887653
No 272
>PTZ00243 ABC transporter; Provisional
Probab=98.26 E-value=2e-06 Score=95.94 Aligned_cols=43 Identities=28% Similarity=0.411 Sum_probs=37.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
++|+.|+|+|+||||||||++.|.+.+. +++|+| ..|.++.+-
T Consensus 1334 ~~GekVaIVGrTGSGKSTLl~lLlrl~~-----p~~G~I~IDG~di~~i 1377 (1560)
T PTZ00243 1334 APREKVGIVGRTGSGKSTLLLTFMRMVE-----VCGGEIRVNGREIGAY 1377 (1560)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcccC
Confidence 5778899999999999999999998887 889999 688888753
No 273
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.26 E-value=1.1e-06 Score=87.50 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=42.1
Q ss_pred hcccCch--hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQ--QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.++.|++ +...++++++ .-++|++++|+||||||||||++.|++.+. .+++|+| +.|.++.
T Consensus 265 l~~~~~~~~~~~vl~~vsl-----~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~----~~~~G~i~~~g~~~~ 328 (506)
T PRK13549 265 LTAWDPVNPHIKRVDDVSF-----SLRRGEILGIAGLVGAGRTELVQCLFGAYP----GRWEGEIFIDGKPVK 328 (506)
T ss_pred Cccccccccccccccceee-----EEcCCcEEEEeCCCCCCHHHHHHHHhCCCC----CCCCcEEEECCEECC
Confidence 3445542 2334555544 225677899999999999999999998764 0378998 5676664
No 274
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.26 E-value=1.5e-06 Score=74.49 Aligned_cols=34 Identities=24% Similarity=0.522 Sum_probs=30.4
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
...|+|+||+||||||+++.|++.++..+++.|.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4469999999999999999999999988887775
No 275
>PLN03130 ABC transporter C family member; Provisional
Probab=98.26 E-value=2e-06 Score=96.14 Aligned_cols=42 Identities=26% Similarity=0.348 Sum_probs=37.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|+.|+|+|+||||||||++.|.+.+. +++|+| ..|.++.+
T Consensus 1263 ~~GekVaIVGrSGSGKSTLl~lL~rl~~-----p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130 1263 SPSEKVGIVGRTGAGKSSMLNALFRIVE-----LERGRILIDGCDISK 1305 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCceEEECCEeccc
Confidence 6677899999999999999999998887 889999 58888864
No 276
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.26 E-value=7.5e-07 Score=78.86 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=30.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
++|++++|+||||||||||++.|++.+. +++|+|+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~sG~i~ 45 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDA-----PDEGDFI 45 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCCCEE
Confidence 5578999999999999999999998766 7888874
No 277
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=5.6e-07 Score=84.87 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=46.2
Q ss_pred hhcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 10 RDTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 10 ~~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
..+.+|+... ..+.|+++ .-.+|++++|+|+||||||||++.|++.+... -.+++|+| |.|.++..
T Consensus 8 ~l~~~~~~~~~~~~~l~~vsl-----~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 8 KLSVHFGDESAPFRAVDRISY-----SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQDLQR 77 (326)
T ss_pred CeEEEECCCCccEEEEeeeEE-----EECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCCcceEEEECCEECCc
Confidence 3456675432 35555555 23557789999999999999999999987521 11468888 78887754
No 278
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.24 E-value=1.7e-06 Score=78.12 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=42.3
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-++|++++|+||||||||||++.|++.++...-.+++|+| +.|.++.
T Consensus 9 l~~~~~~-~~~l~~i~~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 9 FSAYYGE-KKAVKNVTM-----KIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred eEEEeCC-ceeEeeeeE-----eecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcc
Confidence 3455653 344455444 22457799999999999999999999876410001378888 5666654
No 279
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.24 E-value=9.9e-07 Score=77.20 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=42.7
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..+++++++ .-++|++++|+|+||||||||++.|++.+. +++|+| +.|.++.
T Consensus 6 l~~~~~~-~~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 65 (201)
T cd03231 6 LTCERDG-RALFSGLSF-----TLAAGEALQVTGPNGSGKTTLLRILAGLSP-----PLAGRVLLNGGPLD 65 (201)
T ss_pred EEEEeCC-ceeeccceE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecc
Confidence 3455654 345555554 224577899999999999999999998876 788888 4665543
No 280
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.24 E-value=9.7e-07 Score=73.43 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=38.4
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
+..|++. ..+.++++ .-++|++++|+||||||||||++.|++.++ +++|+|+
T Consensus 7 ~~~~~~~-~~l~~~~~-----~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~ 58 (144)
T cd03221 7 SKTYGGK-LLLKDISL-----TINPGDRIGLVGRNGAGKSTLLKLIAGELE-----PDEGIVT 58 (144)
T ss_pred EEEECCc-eEEEeeEE-----EECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEE
Confidence 4455442 34444443 235678999999999999999999998876 7888884
No 281
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.23 E-value=5.7e-07 Score=90.34 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=37.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|+.++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~ 389 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVTA 389 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECCC
Confidence 6788999999999999999999999887 899999 67777653
No 282
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=1e-06 Score=81.12 Aligned_cols=61 Identities=16% Similarity=0.099 Sum_probs=45.3
Q ss_pred hhcccCchh--hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQ--RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~--~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|+.+ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 9 ~l~~~~~~~~~~~~l~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~ 72 (279)
T PRK13650 9 NLTFKYKEDQEKYTLNDVSF-----HVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-----AESGQIIIDGDLLT 72 (279)
T ss_pred eEEEEcCCCCcCeeeeeeEE-----EEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECC
Confidence 456677642 235555554 224577899999999999999999998876 889998 5777764
No 283
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.23 E-value=3.5e-06 Score=95.23 Aligned_cols=141 Identities=12% Similarity=-0.025 Sum_probs=79.7
Q ss_pred hcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCC-HH
Q psy8556 11 DTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPS-II 87 (298)
Q Consensus 11 ~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~-~~ 87 (298)
.++.|+++ ...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.+.... ..
T Consensus 1943 LsK~Y~~~~~~aL~~ISf-----~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-----ptsG~I~i~G~~i~~~~~~~r~ 2012 (2272)
T TIGR01257 1943 LTKVYSGTSSPAVDRLCV-----GVRPGECFGLLGVNGAGKTTTFKMLTGDTT-----VTSGDATVAGKSILTNISDVHQ 2012 (2272)
T ss_pred EEEEECCCCceEEEeeEE-----EEcCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECcchHHHHhh
Confidence 35566543 344555544 225578999999999999999999998876 899999 578777531100 01
Q ss_pred HHcccccccccccCcCccchHHHHHHH-----------HHHhhHHHh--------hcCCceEEEchhH---HHHHHHHcc
Q psy8556 88 EREITPHHLIDIIEPTKSYSVIQFCED-----------ALFSIKNIL--------KKKKLPLLVGGTM---LYFKALRDG 145 (298)
Q Consensus 88 e~~~v~~~l~~~~~~~e~~s~~~f~~~-----------~~~~i~~i~--------~~~~~~IlvGGt~---~y~~~ll~~ 145 (298)
.+..+++. ....+.+++.+.... ..+.+.++. ...++--++||.. ....|++.+
T Consensus 2013 ~IGy~pQ~----~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257 2013 NMGYCPQF----DAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred hEEEEecc----ccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 12223332 111223333332211 011111111 1222335788877 466888865
Q ss_pred ----CCCCCCC--CHHHHHHHHHHHH
Q psy8556 146 ----INKLPPA--NLKLRTKFNIDIN 165 (298)
Q Consensus 146 ----~~~~p~~--d~~lr~~l~~~~~ 165 (298)
+.|.|.+ |+.-|+.+.+.+.
T Consensus 2089 P~VLLLDEPTsGLDp~sr~~l~~lL~ 2114 (2272)
T TIGR01257 2089 PPLVLLDEPTTGMDPQARRMLWNTIV 2114 (2272)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 4466754 8888887766554
No 284
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.23 E-value=2.1e-06 Score=80.99 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=29.6
Q ss_pred EECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 42 ILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 42 I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~i~g~~i~ 35 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-----PDSGSIMLDGEDVT 35 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECC
Confidence 689999999999999998876 889999 5777664
No 285
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.23 E-value=1.1e-06 Score=78.08 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=42.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
.+..|+. ...+.++++ .-.+|++++|+||||||||||++.|++.++ +++|+| +.|.++
T Consensus 6 v~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~~~ 64 (223)
T TIGR03740 6 LSKRFGK-QTAVNNISL-----TVPKNSVYGLLGPNGAGKSTLLKMITGILR-----PTSGEIIFDGHPW 64 (223)
T ss_pred EEEEECC-EEEEeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEec
Confidence 4555653 345555554 224577899999999999999999998776 889988 566554
No 286
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.23 E-value=1.9e-06 Score=80.09 Aligned_cols=50 Identities=24% Similarity=0.274 Sum_probs=37.7
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNK 83 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~k 83 (298)
-++|++++|+|.||||||++++.|.++++..--...+|.| |+|.++.+..
T Consensus 28 i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~ 78 (316)
T COG0444 28 LKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78 (316)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCC
Confidence 3668899999999999999999999999721111235566 8998877443
No 287
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.23 E-value=3.4e-06 Score=84.42 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=33.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+|++++|+||||||||||++.|++.+ +++|.| +.|.++..
T Consensus 310 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~------~~~G~i~~~g~~i~~ 351 (529)
T PRK15134 310 RPGETLGLVGESGSGKSTTGLALLRLI------NSQGEIWFDGQPLHN 351 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCcC------CCCcEEEECCEEccc
Confidence 567789999999999999999999764 268888 57766643
No 288
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.23 E-value=9.3e-07 Score=80.63 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=39.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|+|+
T Consensus 18 l~~~~~~-~~il~~isl-----~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~ 70 (257)
T PRK11247 18 VSKRYGE-RTVLNQLDL-----HIPAGQFVAVVGRSGCGKSTLLRLLAGLET-----PSAGELL 70 (257)
T ss_pred EEEEECC-cceeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEE
Confidence 3455653 345555554 224577899999999999999999998876 7888884
No 289
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.23 E-value=2.1e-06 Score=78.92 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=41.7
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC--------CceE-eccccCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID--------SALV-YCDMDIG 80 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D--------s~qv-y~g~~i~ 80 (298)
+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. ++ +|+| +.|.++.
T Consensus 8 ~~~~~~-~~il~~vsl-----~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-----p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 8 HVARRH-RAILRDLSL-----RIEPGRVTALLGRNGAGKSTLLKALAGDLT-----GGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred EEEECC-EeEEecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CcccccccCCceEEEECCEEcc
Confidence 445543 345556555 223577899999999999999999998875 55 7888 5666654
No 290
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.22 E-value=1.1e-06 Score=77.05 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=43.9
Q ss_pred hcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+.+ ...+.+++. .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.++.
T Consensus 12 l~~~~~~~~~~~l~~isl-----~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 73 (207)
T cd03369 12 LSVRYAPDLPPVLKNVSF-----KVKAGEKIGIVGRTGAGKSTLILALFRFLE-----AEEGKIEIDGIDIS 73 (207)
T ss_pred EEEEeCCCCcccccCceE-----EECCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEhH
Confidence 34556643 245555554 224577899999999999999999998876 788988 5776654
No 291
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.22 E-value=2.7e-06 Score=77.82 Aligned_cols=64 Identities=19% Similarity=0.056 Sum_probs=43.0
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..++.++++ .-++|++++|+||||||||||++.|++.++..-=.+++|+| +.|.++.
T Consensus 25 l~~~~~~-~~il~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 25 VSVFYGE-KQALFDVDL-----DIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred EEEEECC-EEEEEEEEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 4555653 345555554 22457789999999999999999999876410001378888 5776664
No 292
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.22 E-value=2.4e-06 Score=77.77 Aligned_cols=64 Identities=11% Similarity=0.021 Sum_probs=43.3
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..++.++++ .-++|++++|+||||||||||++.|++.+...-..+++|.| +.|.++.
T Consensus 19 l~~~~~~-~~il~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 19 LNFYYGK-FHALKNINL-----DIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred EEEEeCC-eEEeeceeE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 4556654 345555554 22457789999999999999999999875310012478888 5666654
No 293
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1.1e-05 Score=75.25 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=34.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+|++++|+||||||||||++.|++.+....-.+++|.| +.|.++.
T Consensus 69 ~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 69 PEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 578899999999999999999999875300001468888 4666654
No 294
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.21 E-value=7.6e-07 Score=88.21 Aligned_cols=60 Identities=20% Similarity=0.067 Sum_probs=44.1
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 8 ~l~~~~~~-~~il~~vsl-----~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-----p~~G~i~~~~~~~~ 68 (490)
T PRK10938 8 QGTFRLSD-TKTLQLPSL-----TLNAGDSWAFVGANGSGKSALARALAGELP-----LLSGERQSQFSHIT 68 (490)
T ss_pred eEEEEcCC-eeecccceE-----EEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCceEEECCcccc
Confidence 35667764 345666655 224577899999999999999999998776 788988 4565543
No 295
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.21 E-value=3.1e-06 Score=85.22 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=36.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
++|+.++|+|+||||||||++.|++.+. +++|+| +.|.++.
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~-----~~~G~I~i~g~~i~ 397 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYE-----PDSGQILLDGHDLA 397 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEeHH
Confidence 6788999999999999999999999887 889999 4776654
No 296
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.21 E-value=1.3e-06 Score=79.08 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=41.5
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecccc
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMD 78 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~ 78 (298)
.+..|++. ..+.++++ .-++|++++|+||||||||||++.|++.++ +++|.| +.|.+
T Consensus 9 l~~~~~~~-~~l~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~ 66 (253)
T TIGR02323 9 LSKSYGGG-KGCRDVSF-----DLYPGEVLGIVGESGSGKSTLLGCLAGRLA-----PDHGTATYIMRS 66 (253)
T ss_pred eEEEeCCc-eEeecceE-----EEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEeccc
Confidence 35566542 34444444 224577999999999999999999998876 788988 56654
No 297
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.20 E-value=1.3e-06 Score=82.32 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=45.2
Q ss_pred hcccCchh----hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQ----RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~----~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|+++ ...+.+++. .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 27 l~~~y~~~~~~~~~~L~~vsl-----~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-----p~~G~I~i~g~~~~~ 92 (320)
T PRK13631 27 LYCVFDEKQENELVALNNISY-----TFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-----SKYGTIQVGDIYIGD 92 (320)
T ss_pred EEEEeCCCCcccccceeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCEEccc
Confidence 45567543 235666555 224577899999999999999999998876 889998 57766643
No 298
>PLN03211 ABC transporter G-25; Provisional
Probab=98.20 E-value=3.6e-06 Score=86.54 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=41.5
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
++.|++ ..++++++. .-++|++++|+||||||||||++.|++.+... ..+|+| +.|.++
T Consensus 75 ~~~~~~-~~iL~~vs~-----~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~---~~sG~I~inG~~~ 134 (659)
T PLN03211 75 TRQIQE-RTILNGVTG-----MASPGEILAVLGPSGSGKSTLLNALAGRIQGN---NFTGTILANNRKP 134 (659)
T ss_pred cccCCC-CeeeeCCEE-----EEECCEEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEEEECCEEC
Confidence 445543 456666655 22456789999999999999999999886511 137888 577655
No 299
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=3e-06 Score=76.97 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=43.1
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+...--.+++|+| +.|.++.
T Consensus 18 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 18 MNLWYGQ-HHALKNINL-----SIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred EEEEECC-eeeEEeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 4556654 345555554 22457789999999999999999999876410001257888 6776654
No 300
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.20 E-value=1.3e-06 Score=77.56 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=35.5
Q ss_pred hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 20 QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 20 ~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
..+.++++ .-.+|++++|+||||||||||++.|++.+. +++|+|+
T Consensus 22 ~il~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~ 66 (224)
T TIGR02324 22 PVLKNVSL-----TVNAGECVALSGPSGAGKSTLLKSLYANYL-----PDSGRIL 66 (224)
T ss_pred EEEecceE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEE
Confidence 34555554 224577899999999999999999998876 7889984
No 301
>PRK13409 putative ATPase RIL; Provisional
Probab=98.20 E-value=7.3e-07 Score=90.46 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=41.9
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
..+..|++..+.+.++. +.++|++++|+||||||||||++.|++.+. +|+|+|
T Consensus 78 ~~~~~yg~~~~~L~~l~------~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-----p~~G~i 130 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP------IPKEGKVTGILGPNGIGKTTAVKILSGELI-----PNLGDY 130 (590)
T ss_pred CceEEecCCceeEecCC------cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCccc
Confidence 35677865456555553 356788999999999999999999998776 788887
No 302
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.20 E-value=2.8e-06 Score=76.68 Aligned_cols=65 Identities=15% Similarity=-0.002 Sum_probs=43.2
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|++ ...+.|+++ .-.+|++++|+||||||||||++.|++......-.+++|+| +.|.++.
T Consensus 8 ~l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14240 8 DLDLFYGD-FQALKKINL-----DIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY 73 (250)
T ss_pred EEEEEECC-ceeeecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 34556654 345555555 22457789999999999999999999865310001267888 5776654
No 303
>KOG0057|consensus
Probab=98.19 E-value=5.5e-06 Score=81.60 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=50.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCCCCH--H
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNKPSI--I 87 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~kp~~--~ 87 (298)
++-+|+.++.++.+.++ .-++|+-++|+|+|||||||+++.|.+.+. ++|.|+ .|.++.+..+.. .
T Consensus 357 V~f~y~~k~~iL~gvsf-----~I~kGekVaIvG~nGsGKSTilr~LlrF~d------~sG~I~IdG~dik~~~~~SlR~ 425 (591)
T KOG0057|consen 357 VHFSYGPKRKVLKGVSF-----TIPKGEKVAIVGSNGSGKSTILRLLLRFFD------YSGSILIDGQDIKEVSLESLRQ 425 (591)
T ss_pred eEEEeCCCCceecceeE-----EecCCCEEEEECCCCCCHHHHHHHHHHHhc------cCCcEEECCeeHhhhChHHhhh
Confidence 34456666666666655 235566799999999999999999988875 678885 788876543322 2
Q ss_pred HHccccc
Q psy8556 88 EREITPH 94 (298)
Q Consensus 88 e~~~v~~ 94 (298)
-+..+|+
T Consensus 426 ~Ig~VPQ 432 (591)
T KOG0057|consen 426 SIGVVPQ 432 (591)
T ss_pred heeEeCC
Confidence 3344555
No 304
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.19 E-value=3e-06 Score=77.43 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=43.1
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ...++++++ .-.+|++++|+||||||||||++.|++.....--.+++|+| +.|.++..
T Consensus 27 l~~~~~~-~~il~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 27 LSIYYGE-KRAVNDISM-----DIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred EEEEeCC-ceeeeceEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 3455653 345555554 22457789999999999999999999864210002578888 56766643
No 305
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.19 E-value=8.4e-07 Score=89.40 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=41.7
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
..+..|+++..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|.|+
T Consensus 11 ~l~~~y~~~~~il~~vs~-----~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-----p~~G~i~ 65 (556)
T PRK11819 11 RVSKVVPPKKQILKDISL-----SFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFEGEAR 65 (556)
T ss_pred eEEEEeCCCCeeeeCceE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEE
Confidence 356778634567777766 223456899999999999999999998876 6777774
No 306
>PRK05439 pantothenate kinase; Provisional
Probab=98.19 E-value=3.7e-07 Score=85.40 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=31.8
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCC-------CeEeecCC
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIP-------CEIISIDS 70 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~-------~~iis~Ds 70 (298)
...++.+|+|.|++||||||++..|+..++ ..+|+.|+
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~Dd 126 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDG 126 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccc
Confidence 345678999999999999999999988653 45788887
No 307
>KOG0055|consensus
Probab=98.19 E-value=3.2e-06 Score=90.18 Aligned_cols=43 Identities=28% Similarity=0.338 Sum_probs=37.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTN 82 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~ 82 (298)
+.|+.++|+|||||||||+...|++.++ +++|+|+ +|.++.+-
T Consensus 377 ~~G~~valVG~SGsGKST~i~LL~Rfyd-----P~~G~V~idG~di~~~ 420 (1228)
T KOG0055|consen 377 PSGQTVALVGPSGSGKSTLIQLLARFYD-----PTSGEVLIDGEDIRNL 420 (1228)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCceEEEcCccchhc
Confidence 4566899999999999999999999998 9999995 78877653
No 308
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.18 E-value=4.3e-06 Score=75.47 Aligned_cols=64 Identities=17% Similarity=0.092 Sum_probs=42.8
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+....-..++|+| +.|.++.
T Consensus 10 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 74 (252)
T PRK14272 10 VNIYYGD-KQAVKNVNL-----DVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74 (252)
T ss_pred eEEEECC-EEeeccceE-----EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcc
Confidence 4556654 345555554 22457789999999999999999999886411000147888 5676654
No 309
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.18 E-value=4.2e-06 Score=73.94 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=30.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
+.+.+|+|+|++||||||++..|.+ ++..++++|
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D 36 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEAD 36 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEecc
Confidence 3456899999999999999999986 788898888
No 310
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.18 E-value=1.4e-06 Score=78.58 Aligned_cols=65 Identities=14% Similarity=0.013 Sum_probs=44.2
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.....--.+++|+| +.|.++.
T Consensus 8 ~l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 8 NLDLFYGE-NQALKSINL-----PIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred ccEEEECC-eeeeecceE-----EecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcc
Confidence 34566653 445555555 22457789999999999999999999876511001368888 5676653
No 311
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.18 E-value=5.3e-06 Score=93.81 Aligned_cols=122 Identities=20% Similarity=0.213 Sum_probs=71.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH--HHHcccccccccccCcCccchHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI--IEREITPHHLIDIIEPTKSYSVIQF 111 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~--~e~~~v~~~l~~~~~~~e~~s~~~f 111 (298)
.+|++++|+||||||||||++.|++.+. +++|+| +.|.++.+. +.. ..+..++++.. ....+++.+.
T Consensus 954 ~~Gei~aLLG~NGAGKSTLLkiLaGLl~-----PtsG~I~i~G~dI~~~-~~~~r~~IG~~pQ~~~----L~~~LTV~E~ 1023 (2272)
T TIGR01257 954 YENQITAFLGHNGAGKTTTLSILTGLLP-----PTSGTVLVGGKDIETN-LDAVRQSLGMCPQHNI----LFHHLTVAEH 1023 (2272)
T ss_pred cCCcEEEEECCCCChHHHHHHHHhcCCC-----CCceEEEECCEECcch-HHHHhhcEEEEecCCc----CCCCCCHHHH
Confidence 5678999999999999999999998876 899999 578777532 111 11223344311 1122233222
Q ss_pred HHH-----------HHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----CCCCCCC--CHHHHHHHHHH
Q psy8556 112 CED-----------ALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----INKLPPA--NLKLRTKFNID 163 (298)
Q Consensus 112 ~~~-----------~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----~~~~p~~--d~~lr~~l~~~ 163 (298)
... ..+.+.++.+ ...+--++||.. ....|++.+ +.|.|.+ |+.-++.+.+.
T Consensus 1024 L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~l 1103 (2272)
T TIGR01257 1024 ILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDL 1103 (2272)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 211 1111222221 112334788877 466788865 4466754 78878777666
Q ss_pred HHh
Q psy8556 164 INK 166 (298)
Q Consensus 164 ~~~ 166 (298)
+.+
T Consensus 1104 L~~ 1106 (2272)
T TIGR01257 1104 LLK 1106 (2272)
T ss_pred HHH
Confidence 544
No 312
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.18 E-value=4.2e-06 Score=86.44 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=37.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|+.++|+|+||||||||++.|++.+. +++|+| +.|.++..
T Consensus 481 ~~G~~vaivG~sGsGKSTL~~ll~g~~~-----p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 481 KPGEFIGIVGPSGSGKSTLTKLLQRLYT-----PQHGQVLVDGVDLAI 523 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEehhh
Confidence 6788999999999999999999999887 889999 68877753
No 313
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.18 E-value=2.5e-06 Score=77.07 Aligned_cols=65 Identities=12% Similarity=-0.016 Sum_probs=42.8
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++..+..-..+++|+| +.|.++.
T Consensus 10 ~l~~~~~~-~~~l~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 75 (252)
T PRK14255 10 DVHLFYGK-FEALKGIDL-----DFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY 75 (252)
T ss_pred eEEEEECC-eeEEecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcc
Confidence 34566764 345555554 22467899999999999999999999864310000247888 5676654
No 314
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.17 E-value=7.2e-07 Score=80.63 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=43.4
Q ss_pred hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
...+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++........+++|+| +.|.++.
T Consensus 9 ~~l~~~~~~-~~~l~~is~-----~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 75 (251)
T PRK14244 9 KNLNLWYGS-KQILFDINL-----DIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75 (251)
T ss_pred eeEEEEECC-eeeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehH
Confidence 344556652 345555555 22457789999999999999999999875310011467888 5666553
No 315
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.17 E-value=3.7e-06 Score=77.09 Aligned_cols=64 Identities=14% Similarity=0.023 Sum_probs=42.9
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+...-..+++|+| +.|.++.
T Consensus 31 l~~~~~~-~~il~~vs~-----~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 31 LNLFYGD-KQALFDISM-----RIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred EEEEECC-eeEeeeEEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 3445543 344555444 22467899999999999999999999876411111478888 5776664
No 316
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=1.7e-06 Score=81.69 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=36.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+|++++|+|+||||||||++.|++.+. +++|+| +.|.++..
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-----p~~G~i~~~g~~l~~ 81 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIET-----PTGGELYYQGQDLLK 81 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEEcCc
Confidence 4577999999999999999999998876 688998 68877654
No 317
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.17 E-value=1e-06 Score=88.62 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=41.4
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
..+..|+.+..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|.|+
T Consensus 9 nls~~~~~~~~il~~is~-----~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-----p~~G~i~ 63 (552)
T TIGR03719 9 RVSKVVPPKKEILKDISL-----SFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFNGEAR 63 (552)
T ss_pred eEEEecCCCCeeecCceE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEE
Confidence 356778633456677666 224466899999999999999999998775 6778774
No 318
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.16 E-value=1.2e-06 Score=80.66 Aligned_cols=66 Identities=15% Similarity=-0.001 Sum_probs=44.3
Q ss_pred hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
...+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+...-=.+++|.| +.|.++.
T Consensus 25 ~nl~~~~~~-~~il~~vs~-----~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 25 VNLTLGFAG-KTVLDQVSM-----GFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred eeEEEEECC-EEEeeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence 345666753 445555554 22467899999999999999999999876410000268888 5666654
No 319
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.16 E-value=3.9e-06 Score=76.76 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=42.6
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+..|++ ...+.|+++ .-.+|++++|+||||||||||++.|++.+....-.+++|+| +.|.++.
T Consensus 27 ~~~~~~-~~il~~vsl-----~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 27 HVYYGK-KEAIKGIDM-----QFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred EEEECC-eeeEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 445543 334555544 22467899999999999999999999876411112578888 5776664
No 320
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.16 E-value=3.5e-06 Score=71.03 Aligned_cols=35 Identities=17% Similarity=0.420 Sum_probs=30.9
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
++..|.|+|++||||||+++.||+.++..+++.|.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~ 37 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDH 37 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 46689999999999999999999999887876664
No 321
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.16 E-value=2e-06 Score=79.18 Aligned_cols=60 Identities=17% Similarity=0.036 Sum_probs=45.0
Q ss_pred hcccCchhh--hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQR--QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~--~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+.++ ..+.++++ .-.+|++++|+||||||||||++.|++.++ +++|.| +.|.++.
T Consensus 10 l~~~~~~~~~~~~l~~v~l-----~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~ 72 (277)
T PRK13642 10 LVFKYEKESDVNQLNGVSF-----SITKGEWVSIIGQNGSGKSTTARLIDGLFE-----EFEGKVKIDGELLT 72 (277)
T ss_pred EEEEcCCCCcCeeeeeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEECC
Confidence 456676432 35555555 224577899999999999999999998876 889998 5777664
No 322
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.15 E-value=1.1e-05 Score=79.09 Aligned_cols=121 Identities=19% Similarity=0.122 Sum_probs=69.7
Q ss_pred hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHccccccccc
Q psy8556 20 QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREITPHHLID 98 (298)
Q Consensus 20 ~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~v~~~l~~ 98 (298)
-++.++++ .-.+|+.++|+||||||||||++.|.+... +.+|.| .+|.++.. .+.+++...-.||.+
T Consensus 350 pil~~isF-----~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~-----p~~G~VRLDga~l~q--Wd~e~lG~hiGYLPQ 417 (580)
T COG4618 350 PILKGISF-----ALQAGEALGIIGPSGSGKSTLARLLVGIWP-----PTSGSVRLDGADLRQ--WDREQLGRHIGYLPQ 417 (580)
T ss_pred cceeccee-----EecCCceEEEECCCCccHHHHHHHHHcccc-----cCCCcEEecchhhhc--CCHHHhccccCcCcc
Confidence 44445444 445677899999999999999999987766 777777 46666542 334444333223322
Q ss_pred ccC------------cCccchHHHHHH-----HHHHhhHHHhhcCCceEEEchhHH---------HHHHHHcc----CCC
Q psy8556 99 IIE------------PTKSYSVIQFCE-----DALFSIKNILKKKKLPLLVGGTML---------YFKALRDG----INK 148 (298)
Q Consensus 99 ~~~------------~~e~~s~~~f~~-----~~~~~i~~i~~~~~~~IlvGGt~~---------y~~~ll~~----~~~ 148 (298)
-++ +.++.+...-.+ .+++.|-......+++|-.||..+ ..+++..+ +.|
T Consensus 418 dVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLD 497 (580)
T COG4618 418 DVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLD 497 (580)
T ss_pred cceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEec
Confidence 221 112222222222 234455555566677777777663 45666644 345
Q ss_pred CCCC
Q psy8556 149 LPPA 152 (298)
Q Consensus 149 ~p~~ 152 (298)
.|.+
T Consensus 498 EPNs 501 (580)
T COG4618 498 EPNS 501 (580)
T ss_pred CCCC
Confidence 5644
No 323
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.15 E-value=1.8e-06 Score=78.48 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=39.5
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. +++|+|+
T Consensus 10 l~~~~~~-~~vl~~vs~-----~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~ 62 (251)
T PRK09544 10 VSVSFGQ-RRVLSDVSL-----ELKPGKILTLLGPNGAGKSTLVRVVLGLVA-----PDEGVIK 62 (251)
T ss_pred eEEEECC-ceEEEeEEE-----EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEE
Confidence 4556654 345555555 224577899999999999999999998876 7788874
No 324
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.15 E-value=3.8e-06 Score=76.03 Aligned_cols=40 Identities=18% Similarity=0.446 Sum_probs=33.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+|++++|+||||||||||++.|++.++ ++|+| +.|.++.
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~~------~~G~i~~~g~~i~ 60 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARMAGLLP------GSGSIQFAGQPLE 60 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC------CCeEEEECCEecC
Confidence 5678999999999999999999998653 37888 5776664
No 325
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.15 E-value=9.8e-07 Score=90.37 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=41.3
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
..++.|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. +|+|+|+
T Consensus 6 nls~~~g~-~~~l~~vs~-----~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-----pd~G~I~ 59 (638)
T PRK10636 6 SLQIRRGV-RVLLDNATA-----TINPGQKVGLVGKNGCGKSTLLALLKNEIS-----ADGGSYT 59 (638)
T ss_pred EEEEEeCC-ceeecCcEE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEE
Confidence 35667754 456677666 123466899999999999999999998765 7888884
No 326
>KOG0058|consensus
Probab=98.15 E-value=1.9e-06 Score=87.28 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=47.0
Q ss_pred ccCchhh--hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCC
Q psy8556 13 ETDPQQR--QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNK 83 (298)
Q Consensus 13 ~~~~~~~--~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~k 83 (298)
=+||... .+++|+++ +-++|++++|||||||||||++..|-+.+. +.+|+| .+|.+|..-+
T Consensus 473 FaYP~Rp~~~Vlk~lsf-----ti~pGe~vALVGPSGsGKSTiasLL~rfY~-----PtsG~IllDG~~i~~~~ 536 (716)
T KOG0058|consen 473 FAYPTRPDVPVLKNLSF-----TIRPGEVVALVGPSGSGKSTIASLLLRFYD-----PTSGRILLDGVPISDIN 536 (716)
T ss_pred eecCCCCCchhhcCcee-----eeCCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCCeEEECCeehhhcC
Confidence 3565554 35566555 335567899999999999999999999998 999999 6888886533
No 327
>PRK06547 hypothetical protein; Provisional
Probab=98.15 E-value=2.5e-06 Score=73.31 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=35.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD 76 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g 76 (298)
..+.+|+|.|++||||||++..|++.++..+++.|+ +|.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~--~~~~ 52 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDD--LYPG 52 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccc--eecc
Confidence 446789999999999999999999999989999887 6654
No 328
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.14 E-value=1.9e-06 Score=77.74 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=41.8
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+..|++ ...+.++++ .-++|++++|+||||||||||++.|++... ..+++|.| +.|.++.
T Consensus 14 ~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~G~i~~~g~~~~ 74 (252)
T CHL00131 14 HASVNE-NEILKGLNL-----SINKGEIHAIMGPNGSGKSTLSKVIAGHPA---YKILEGDILFKGESIL 74 (252)
T ss_pred EEEeCC-EEeeeccee-----EEcCCcEEEEECCCCCCHHHHHHHHcCCCc---CcCCCceEEECCEEcc
Confidence 445653 345555554 224678999999999999999999998621 22678888 5666554
No 329
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.14 E-value=1.2e-06 Score=87.77 Aligned_cols=67 Identities=22% Similarity=0.250 Sum_probs=47.1
Q ss_pred hhcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 10 RDTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 10 ~~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
..+..|+++ ...+.++++ .-.+|++++|+||||||||||++.|++.++.....+++|.| +.|.++..
T Consensus 10 ~l~~~~~~~~~~~~~l~~isl-----~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 10 NLSVAFRQQQTVRTVVNDVSL-----QIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred ceEEEecCCCCceeeeeceEE-----EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence 456778642 356666666 12347789999999999999999999887621112378988 67777643
No 330
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.14 E-value=4.1e-06 Score=75.64 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=42.3
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++......-.+++|+| +.|.++.
T Consensus 11 l~~~~~~-~~~l~~~s~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~ 75 (252)
T PRK14239 11 LSVYYNK-KKALNSVSL-----DFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY 75 (252)
T ss_pred eEEEECC-eeeeeeeeE-----EEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECc
Confidence 4556653 345566555 22457789999999999999999999863210001257888 5676654
No 331
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.14 E-value=2.2e-06 Score=71.84 Aligned_cols=41 Identities=29% Similarity=0.351 Sum_probs=33.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+|++++|+||||||||||++.|++.++ +++|++ +.|.++.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~-----~~~G~i~~~~~~~~ 64 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK-----PTSGEILIDGKDIA 64 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEcc
Confidence 4567899999999999999999998765 788988 4655543
No 332
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.14 E-value=1.7e-06 Score=85.92 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=43.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.++.|++ ..+++++++ .-.+|++++|+||||||||||++.|++.++. .+++|+| +.|.++.
T Consensus 7 l~~~~~~-~~il~~isl-----~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~---~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 7 IVKTFGG-VKALDGIDL-----EVRPGECVGLCGENGAGKSTLMKILSGVYPH---GTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeCC-eEeecceEE-----EEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCCCeEEEECCEECC
Confidence 4556753 345666655 2245778999999999999999999987651 0268988 5776664
No 333
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=4.2e-06 Score=75.73 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=43.0
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ...+.|+++ .-.+|++++|+||||||||||++.|++..+..--.+++|.| +.|.++.+
T Consensus 12 l~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 12 LNLWYGE-KHALYDITI-----SIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred eEEEECC-eeeeeeeEE-----EECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 3455653 345555554 22467899999999999999999999865411001247888 67766643
No 334
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.13 E-value=2.6e-06 Score=76.76 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=41.5
Q ss_pred cCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 14 TDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+|+++...+++.++ .-++|+.++|+||||||||||++.|++.+. +++|.| ..|.++.
T Consensus 12 ~y~~~~~~l~~v~~-----~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-----p~~G~v~~~g~~~~ 69 (235)
T COG1122 12 RYPGRKAALKDVSL-----EIEKGERVLLIGPNGSGKSTLLKLLNGLLK-----PTSGEVLVDGLDTS 69 (235)
T ss_pred EcCCCceeeeeeEE-----EECCCCEEEEECCCCCCHHHHHHHHcCcCc-----CCCCEEEECCeecc
Confidence 45555344444444 225577899999999999999999988877 888888 4666654
No 335
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.13 E-value=2.7e-06 Score=84.47 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=34.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeec-CCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISI-DSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~-Ds~qv-y~g~~i~ 80 (298)
.+|++++|+||||||||||++.|++.+. + ++|.| +.|.++.
T Consensus 284 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~~G~i~~~g~~~~ 326 (500)
T TIGR02633 284 RRGEILGVAGLVGAGRTELVQALFGAYP-----GKFEGNVFINGKPVD 326 (500)
T ss_pred eCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCeEEEECCEECC
Confidence 4577899999999999999999998764 4 68888 5776664
No 336
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.13 E-value=2.2e-06 Score=77.94 Aligned_cols=59 Identities=24% Similarity=0.281 Sum_probs=42.7
Q ss_pred cccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 12 TETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 12 ~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+..|+.. ...+.++++ .-++|++++|+|+||||||||++.|++.+. +++|+| +.|.++.
T Consensus 26 ~~~~~~~~~~il~~isl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~i~ 86 (257)
T cd03288 26 CVRYENNLKPVLKHVKA-----YIKPGQKVGICGRTGSGKSSLSLAFFRMVD-----IFDGKIVIDGIDIS 86 (257)
T ss_pred EEEeCCCCCcceeEEEE-----EEcCCCEEEEECCCCCCHHHHHHHHHcccC-----CCCCeEEECCEEhh
Confidence 4455542 244555544 224677899999999999999999998776 788988 5776654
No 337
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.13 E-value=2.1e-06 Score=78.59 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=35.6
Q ss_pred hhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 17 QQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
.....+.++++ .-.+|++++|+||||||||||++.|++.++ +++|+|
T Consensus 35 ~~~~il~~is~-----~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-----p~~G~I 81 (264)
T PRK13546 35 KTFFALDDISL-----KAYEGDVIGLVGINGSGKSTLSNIIGGSLS-----PTVGKV 81 (264)
T ss_pred CceEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEE
Confidence 33344444444 235677899999999999999999998876 777777
No 338
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.13 E-value=1e-06 Score=76.99 Aligned_cols=90 Identities=19% Similarity=0.139 Sum_probs=56.6
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHc
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIERE 90 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~ 90 (298)
.|+|. ++..+++.++ .-.+|+++++.||||+||||..-++. .++.+|+|.| .++.+|+........+-
T Consensus 11 ~K~y~-kr~Vv~~Vsl-----~v~~GEiVGLLGPNGAGKTT~Fymi~-----Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 11 AKSYK-KRKVVNDVSL-----EVNSGEIVGLLGPNGAGKTTTFYMIV-----GLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred hHhhC-CeeeeeeeeE-----EEcCCcEEEEECCCCCCceeEEEEEE-----EEEecCCceEEECCcccccCChHHHhhc
Confidence 34443 3444555554 11457799999999999999988884 4566999999 58888875444333333
Q ss_pred ccccccccccCcCccchHHHHHH
Q psy8556 91 ITPHHLIDIIEPTKSYSVIQFCE 113 (298)
Q Consensus 91 ~v~~~l~~~~~~~e~~s~~~f~~ 113 (298)
++. +|.+..+....+|+.+...
T Consensus 80 Gig-YLpQE~SIFr~LtV~dNi~ 101 (243)
T COG1137 80 GIG-YLPQEASIFRKLTVEDNIM 101 (243)
T ss_pred Ccc-cccccchHhhcCcHHHHHH
Confidence 333 2333344445556555443
No 339
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.12 E-value=2.5e-06 Score=78.67 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=44.5
Q ss_pred hhcccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC---ceE-eccccCCC
Q psy8556 10 RDTETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS---ALV-YCDMDIGT 81 (298)
Q Consensus 10 ~~~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds---~qv-y~g~~i~t 81 (298)
..+..|++. ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++ |+| +.|.++..
T Consensus 10 ~l~~~~~~~~~~~l~~v~l-----~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-----p~~g~~G~i~i~g~~~~~ 76 (282)
T PRK13640 10 HVSFTYPDSKKPALNDISF-----SIPRGSWTALIGHNGSGKSTISKLINGLLL-----PDDNPNSKITVDGITLTA 76 (282)
T ss_pred EEEEEcCCCCccceeeEEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCCCCCcEEEECCEECCc
Confidence 345667643 345666655 223567899999999999999999998875 555 788 57776643
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.12 E-value=4e-06 Score=93.01 Aligned_cols=29 Identities=34% Similarity=0.394 Sum_probs=26.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPC 63 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~ 63 (298)
++|+.++|+||||||||||++.|++.+..
T Consensus 1192 ~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1192 DSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 56778999999999999999999999873
No 341
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.12 E-value=5.1e-06 Score=76.17 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=42.2
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+..|++ ...+.++++ .-.+|++++|+|+||||||||++.|++.+....-.+++|.| +.|.++.
T Consensus 31 ~~~~~~-~~il~~vsl-----~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 31 NLWYGE-DHALKNINL-----DIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred EEEECC-cceeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence 445553 345555554 22457799999999999999999999876410001478888 5776664
No 342
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.12 E-value=2.1e-06 Score=76.99 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=32.9
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC 75 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~ 75 (298)
.-.+|+.++|+|+||||||||++.|++.++ ||+|+|..
T Consensus 49 ~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~-----Pt~G~v~v 86 (249)
T COG1134 49 EIYKGERVGIIGHNGAGKSTLLKLIAGIYK-----PTSGKVKV 86 (249)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCccC-----CCCceEEE
Confidence 336678899999999999999999998776 99999853
No 343
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.11 E-value=6.7e-06 Score=74.26 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=42.6
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+. ..+++++++ .-.+|++++|+||||||||||++.|++.+...--.+++|+| +.|.++.
T Consensus 10 l~~~~~~-~~~l~~~sl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~ 74 (251)
T PRK14251 10 VHLSYGN-YEALHGISL-----DFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIY 74 (251)
T ss_pred eEEEECC-eeeeeeeeE-----EEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcc
Confidence 4555653 345555555 22457789999999999999999999876310000367888 5776654
No 344
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=5.8e-06 Score=74.73 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=41.6
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC-----CceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID-----SALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D-----s~qv-y~g~~i~ 80 (298)
.+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. ++ +|.| +.|.++.
T Consensus 10 l~~~~~~-~~il~~~s~-----~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 10 VNFFYHK-HQVLKNINM-----DFPERQITAIIGPSGCGKSTLLRALNRMND-----IVSGARLEGAVLLDNENIY 74 (251)
T ss_pred EEEEECC-eeEecceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccC-----ccccCCcccEEEECCEEcc
Confidence 4556653 335555554 224577899999999999999999998875 44 5777 5665553
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.10 E-value=1.5e-06 Score=89.03 Aligned_cols=54 Identities=13% Similarity=0.168 Sum_probs=40.9
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
..++.|+. ..++.++++ .-.+|++++|+||||||||||+++|++... +|+|+|+
T Consensus 8 ~ls~~~~~-~~il~~is~-----~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-----p~~G~I~ 61 (635)
T PRK11147 8 GAWLSFSD-APLLDNAEL-----HIEDNERVCLVGRNGAGKSTLMKILNGEVL-----LDDGRII 61 (635)
T ss_pred eEEEEeCC-ceeEeCcEE-----EECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEE
Confidence 34667754 456666665 223467899999999999999999998765 7888884
No 346
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.10 E-value=3.6e-06 Score=80.23 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=36.9
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIG 80 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~ 80 (298)
-++|+++.|+|.|||||||+++.|.+++. +++|.|+ +|.++.
T Consensus 346 ikrGelvFliG~NGsGKST~~~LLtGL~~-----PqsG~I~ldg~pV~ 388 (546)
T COG4615 346 IKRGELVFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVS 388 (546)
T ss_pred EecCcEEEEECCCCCcHHHHHHHHhcccC-----CCCCceeECCccCC
Confidence 37789999999999999999999999888 9999996 666654
No 347
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=6.2e-06 Score=74.41 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=42.6
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...+.|+++ .-.+|++++|+||||||||||++.|++..+..-..+++|+| +.|.++.
T Consensus 9 v~~~~~~-~~~l~~~s~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~ 73 (250)
T PRK14266 9 LNTYFDD-AHILKNVNL-----DIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73 (250)
T ss_pred EEEEeCC-eEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcc
Confidence 3455653 335555554 22457789999999999999999999875311111378888 5776654
No 348
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.09 E-value=2.9e-06 Score=77.26 Aligned_cols=59 Identities=25% Similarity=0.263 Sum_probs=42.1
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC---CceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID---SALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D---s~qv-y~g~~i~ 80 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. ++ +|+| +.|.++.
T Consensus 10 l~~~~~~-~~il~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~~~~G~i~~~g~~~~ 72 (262)
T PRK09984 10 LAKTFNQ-HQALHAVDL-----NIHHGEMVALLGPSGSGKSTLLRHLSGLIT-----GDKSAGSHIELLGRTVQ 72 (262)
T ss_pred EEEEeCC-eEEEecceE-----EEcCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCCceEEEECCEecc
Confidence 3556653 345555555 224678999999999999999999998775 44 4788 5776654
No 349
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.09 E-value=1.7e-05 Score=78.75 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=78.2
Q ss_pred hhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHccc-------
Q psy8556 21 LTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREIT------- 92 (298)
Q Consensus 21 ~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~v------- 92 (298)
.+.|+++ .-.+|++++|+|.|||||||++..|.+.++... ...+|.| |+|.++... +..+++.+
T Consensus 24 ~v~~vsf-----~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~dl~~l--~~~~~r~~rg~~Ia~ 95 (539)
T COG1123 24 AVRDVSF-----EVEPGEILGIVGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRDLLGL--SEREMRKLRGKRIAM 95 (539)
T ss_pred eeecceE-----EecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcchhcC--CHHHHHHhccccEEE
Confidence 4445444 335678999999999999999999999987443 3457888 788877643 33333332
Q ss_pred -ccccccccCcCccchHHHHHH------------HHHHhhHHHhhc---------CCce-EEEchhH---HHHHHHHcc-
Q psy8556 93 -PHHLIDIIEPTKSYSVIQFCE------------DALFSIKNILKK---------KKLP-LLVGGTM---LYFKALRDG- 145 (298)
Q Consensus 93 -~~~l~~~~~~~e~~s~~~f~~------------~~~~~i~~i~~~---------~~~~-IlvGGt~---~y~~~ll~~- 145 (298)
++.-...++ +.+++++-.. .+.+.+.+++.. .+.| -++||.. +...++...
T Consensus 96 i~Q~p~~sln--P~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P 173 (539)
T COG1123 96 IFQDPMTSLN--PVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKP 173 (539)
T ss_pred EecCchhhcC--chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCC
Confidence 222222222 2233332222 122222222211 2234 6889977 667777755
Q ss_pred ---CCCCCCC--CHHHHHHHHHHHH
Q psy8556 146 ---INKLPPA--NLKLRTKFNIDIN 165 (298)
Q Consensus 146 ---~~~~p~~--d~~lr~~l~~~~~ 165 (298)
+.|.|+. |+..+..+.+.+.
T Consensus 174 ~LLIaDEPTTaLDvt~q~qIL~llk 198 (539)
T COG1123 174 KLLIADEPTTALDVTTQAQILDLLK 198 (539)
T ss_pred CEEEECCCccccCHHHHHHHHHHHH
Confidence 4466754 7777777655544
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=98.09 E-value=1.7e-06 Score=89.68 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=31.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC 75 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~ 75 (298)
.+|++++|+||||||||||++.|++.+. +++|.|+.
T Consensus 533 ~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-----p~~G~I~~ 568 (718)
T PLN03073 533 DLDSRIAMVGPNGIGKSTILKLISGELQ-----PSSGTVFR 568 (718)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCceEEE
Confidence 5677899999999999999999998776 77888853
No 351
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=1.7e-06 Score=86.64 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=40.0
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
.+..|++ ..+++++++ .-.+|++++|+||||||||||++.|++.+. +++|+|+
T Consensus 7 ls~~~~~-~~il~~vsl-----~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~ 59 (530)
T PRK15064 7 ITMQFGA-KPLFENISV-----KFGGGNRYGLIGANGCGKSTFMKILGGDLE-----PSAGNVS 59 (530)
T ss_pred EEEEeCC-cEeEeCCEE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEE
Confidence 4566754 346666665 224567899999999999999999998876 6778773
No 352
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.08 E-value=6.8e-06 Score=75.05 Aligned_cols=64 Identities=11% Similarity=-0.024 Sum_probs=41.7
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
++..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.++..--.+++|+| +.|.++.
T Consensus 16 v~~~~~~-~~il~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 80 (264)
T PRK14243 16 LNVYYGS-FLAVKNVWL-----DIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY 80 (264)
T ss_pred eEEEECC-EEEeecceE-----EEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcc
Confidence 3455643 234444444 22467899999999999999999999875410000368888 5666653
No 353
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.08 E-value=1.9e-06 Score=87.38 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=35.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
++|+.++|+||||||||||++.|++.++ +++|.| +.|.++.
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~ 400 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVYD-----PTVGQILIDGIDIN 400 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCCC-----CCCCEEEECCEEhh
Confidence 6788999999999999999999998887 889988 5776654
No 354
>PRK07261 topology modulation protein; Provisional
Probab=98.07 E-value=4e-06 Score=71.83 Aligned_cols=32 Identities=41% Similarity=0.734 Sum_probs=29.5
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.|+|+|++|||||||++.|+..++.++++.|.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 48999999999999999999999888888886
No 355
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.07 E-value=2.6e-06 Score=80.52 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=35.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|++++|+||||||||||++.|++.....--.+++|+| +.|.++..
T Consensus 106 ~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 106 KRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 567799999999999999999999876411001468888 68887753
No 356
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.06 E-value=3.1e-06 Score=78.06 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=42.8
Q ss_pred hcccCch-hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQ-QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~-~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..||. ....+.++++ .-++|++++|+||||||||||++.|++.+. ++|+| +.|.++.
T Consensus 8 ls~~~~~~~~~~l~~isl-----~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~------~~G~I~i~g~~i~ 68 (275)
T cd03289 8 LTAKYTEGGNAVLENISF-----SISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGDIQIDGVSWN 68 (275)
T ss_pred EEEEeCCCCCcceeceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEhh
Confidence 4566764 3356666665 224566899999999999999999998763 46888 4676664
No 357
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=3.2e-06 Score=70.38 Aligned_cols=129 Identities=14% Similarity=0.169 Sum_probs=78.9
Q ss_pred ECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHHHHhhHHH
Q psy8556 43 LGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNI 122 (298)
Q Consensus 43 ~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~~i~~i 122 (298)
+|.+||||||++..||..++...|..|+.+--.+++ .--+++| ++-++. ..|++.....+...
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~--------KM~~GiP------L~DdDR---~pWL~~l~~~~~~~ 63 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIE--------KMSAGIP------LNDDDR---WPWLEALGDAAASL 63 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHH--------HHhCCCC------CCcchh---hHHHHHHHHHHHHh
Confidence 599999999999999999999888777621111110 1112222 111122 23666666666666
Q ss_pred hhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC--CCCChHHHHHHHHHH
Q psy8556 123 LKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN--QPSNRHILHKRISDR 200 (298)
Q Consensus 123 ~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~--~~~~r~~L~~ri~~R 200 (298)
...++.+|++ +|.+ ++.-++.+. .-.|...- +..+.+.+-+|+.+|
T Consensus 64 ~~~~~~~vi~-CSAL-------------------Kr~YRD~LR------------~~~~~~~Fv~L~g~~~~i~~Rm~~R 111 (161)
T COG3265 64 AQKNKHVVIA-CSAL-------------------KRSYRDLLR------------EANPGLRFVYLDGDFDLILERMKAR 111 (161)
T ss_pred hcCCCceEEe-cHHH-------------------HHHHHHHHh------------ccCCCeEEEEecCCHHHHHHHHHhc
Confidence 6666754443 3322 222222221 11222111 446899999999999
Q ss_pred HHHHHhccchHHHHHHHHHhc
Q psy8556 201 FKKMLDQDLLINEVKKIRKKW 221 (298)
Q Consensus 201 v~~M~~~G~l~~Ev~~l~~~~ 221 (298)
-.+.+... |++---..++..
T Consensus 112 ~gHFM~~~-ll~SQfa~LE~P 131 (161)
T COG3265 112 KGHFMPAS-LLDSQFATLEEP 131 (161)
T ss_pred ccCCCCHH-HHHHHHHHhcCC
Confidence 99999999 999888888763
No 358
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.05 E-value=3.8e-06 Score=77.74 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=30.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
.+|++++|+||||||||||++.|++.++ +++|+|+
T Consensus 61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~~-----p~~G~I~ 95 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGELE-----PSEGKIK 95 (282)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEE
Confidence 6788999999999999999999998876 7777774
No 359
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.04 E-value=4.7e-06 Score=72.09 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=36.3
Q ss_pred cccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecccc
Q psy8556 30 TGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMD 78 (298)
Q Consensus 30 ~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~ 78 (298)
.+++..+++.++|+|.||||||||++.|++..+ +.+|.+ ++|..
T Consensus 32 vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-----PTsG~il~n~~~ 76 (267)
T COG4167 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGEILINDHP 76 (267)
T ss_pred eEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-----CCCceEEECCcc
Confidence 456778899999999999999999999987665 888887 45543
No 360
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.04 E-value=5e-06 Score=81.93 Aligned_cols=72 Identities=15% Similarity=0.070 Sum_probs=53.2
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e 88 (298)
..+|+||+=.. +++.++ .-.+|++++++|.||+|||||++.|++.+. +|+|+| +.|..+.-..|....
T Consensus 13 ~i~K~FggV~A-L~~v~l-----~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-----p~~G~I~~~G~~~~~~sp~~A~ 81 (500)
T COG1129 13 GISKSFGGVKA-LDGVSL-----TVRPGEVHALLGENGAGKSTLMKILSGVYP-----PDSGEILIDGKPVAFSSPRDAL 81 (500)
T ss_pred cceEEcCCcee-ecccee-----EEeCceEEEEecCCCCCHHHHHHHHhCccc-----CCCceEEECCEEccCCCHHHHH
Confidence 45777876543 333333 335678999999999999999999998877 999999 688777666666555
Q ss_pred Hccc
Q psy8556 89 REIT 92 (298)
Q Consensus 89 ~~~v 92 (298)
..++
T Consensus 82 ~~GI 85 (500)
T COG1129 82 AAGI 85 (500)
T ss_pred hCCc
Confidence 4444
No 361
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.04 E-value=3.5e-06 Score=83.53 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=32.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeec-CCceE-eccccC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISI-DSALV-YCDMDI 79 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~-Ds~qv-y~g~~i 79 (298)
.+|++++|+||||||||||++.|++..+ + ++|+| +.|.++
T Consensus 284 ~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-----~~~~G~i~~~g~~~ 325 (490)
T PRK10938 284 NPGEHWQIVGPNGAGKSTLLSLITGDHP-----QGYSNDLTLFGRRR 325 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC-----cccCCeEEEecccC
Confidence 5688999999999999999999998543 3 68888 566554
No 362
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.03 E-value=2.5e-06 Score=87.11 Aligned_cols=59 Identities=25% Similarity=0.244 Sum_probs=42.8
Q ss_pred hhhcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556 9 DRDTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM 77 (298)
Q Consensus 9 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~ 77 (298)
...+.+|+.+ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|.| +.|.
T Consensus 16 ~~l~~~y~~~~~~~~~l~~is~-----~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-----p~~G~i~~~g~ 78 (623)
T PRK10261 16 ENLNIAFMQEQQKIAAVRNLSF-----SLQRGETLAIVGESGSGKSVTALALMRLLE-----QAGGLVQCDKM 78 (623)
T ss_pred eceEEEecCCCCceeEEEeeEE-----EECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCeEEEECCE
Confidence 3456677532 245666665 123577899999999999999999999876 677777 4554
No 363
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.03 E-value=2.7e-06 Score=87.12 Aligned_cols=37 Identities=27% Similarity=0.516 Sum_probs=31.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD 76 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g 76 (298)
.+|++++|+||||||||||++.|++.+. +++|.|+.|
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~~ 379 (635)
T PRK11147 343 QRGDKIALIGPNGCGKTTLLKLMLGQLQ-----ADSGRIHCG 379 (635)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEEC
Confidence 5677899999999999999999998765 788888544
No 364
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.02 E-value=8.5e-06 Score=72.09 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=45.5
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIG 80 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~ 80 (298)
.++.|.....+++++. .-.++.++.|+|.||||||||++.|++.+. +|+|+|. .|.+++
T Consensus 12 ~~g~~~ek~~l~~~sL-----~I~~g~FvtViGsNGAGKSTlln~iaG~l~-----~t~G~I~Idg~dVt 71 (263)
T COG1101 12 FKGTPLEKRALNGLSL-----EIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-----PTSGQILIDGVDVT 71 (263)
T ss_pred cCCChhHHHHHhcCce-----eecCCceEEEEcCCCccHHHHHHHhhCccc-----cCCceEEECceecc
Confidence 4455666666666666 113456899999999999999999998776 9999995 777775
No 365
>PRK08118 topology modulation protein; Reviewed
Probab=98.02 E-value=4.2e-06 Score=71.44 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=29.5
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.|.|+||+|||||||++.|+..++.++++.|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999988888886
No 366
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.02 E-value=2.7e-06 Score=87.19 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=31.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC 75 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~ 75 (298)
.+|++++|+||||||||||++.|++.+. +++|.|+-
T Consensus 336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~ 371 (638)
T PRK10636 336 VPGSRIGLLGRNGAGKSTLIKLLAGELA-----PVSGEIGL 371 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEE
Confidence 5678999999999999999999998776 78888853
No 367
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.02 E-value=3.4e-06 Score=84.21 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=39.2
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
.+..|++ ..++.++++ .-.+|++++|+||||||||||++.|++.+. ..+++|+|+
T Consensus 6 l~~~~~~-~~~l~~is~-----~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---~~p~~G~i~ 60 (520)
T TIGR03269 6 LTKKFDG-KEVLKNISF-----TIEEGEVLGILGRSGAGKSVLMHVLRGMDQ---YEPTSGRII 60 (520)
T ss_pred EEEEECC-eEeeeceeE-----EEcCCCEEEEECCCCCCHHHHHHHHhhccc---CCCCceEEE
Confidence 4566753 346666665 123467899999999999999999998751 126778874
No 368
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.02 E-value=9.8e-06 Score=74.98 Aligned_cols=64 Identities=17% Similarity=0.109 Sum_probs=41.2
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ..++.|+++ .-.+|++++|+||||||||||++.|++.....--.+++|+| +.|.++.
T Consensus 45 l~~~~~~-~~il~~vsl-----~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 45 FSIYYGE-FEAVKKVNA-----DILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred eEEEECC-EEEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 3445543 234555544 22457789999999999999999999863200000378888 5676654
No 369
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.01 E-value=3.4e-06 Score=76.78 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=34.8
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
..+++|+. ...+.++++ .-.+|++++|+||||||||||++.|++...
T Consensus 15 ~~~~~~~~-~~~l~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~ 61 (257)
T PRK14246 15 RLYLYIND-KAILKDITI-----KIPNNSIFGIMGPSGSGKSTLLKVLNRLIE 61 (257)
T ss_pred eEEEecCC-ceeEeceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34566653 445566555 224577899999999999999999998865
No 370
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.00 E-value=4.1e-05 Score=78.69 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=46.3
Q ss_pred hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
.+..|+++ ...+.+.++ .-.+|++++|+||||||||||++.|++.++ +++|++ |.|.++...
T Consensus 10 l~~~y~~~~~~~~il~~vs~-----~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~i~~~ 75 (648)
T PRK10535 10 IRRSYPSGEEQVEVLKGISL-----DIYAGEMVAIVGASGSGKSTLMNILGCLDK-----PTSGTYRVAGQDVATL 75 (648)
T ss_pred EEEEeCCCCCCeeeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcCcC
Confidence 45667643 245555554 224577899999999999999999999876 889998 788777643
No 371
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.00 E-value=4.8e-06 Score=74.07 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=41.5
Q ss_pred cccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 12 TETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 12 ~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
+-.||.. ..++.|+++ .-.+|++++|+||||||||||++.|++.+... .+++|+| +.|.++
T Consensus 10 ~~~~~~~~~~~~~l~~vsl-----~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~--~~~~G~i~~~g~~~ 74 (226)
T cd03234 10 GLKAKNWNKYARILNDVSL-----HVESGQVMAILGSSGSGKTTLLDAISGRVEGG--GTTSGQILFNGQPR 74 (226)
T ss_pred eeeeecCccccccccCceE-----EEcCCeEEEEECCCCCCHHHHHHHHhCccCCC--CCCceEEEECCEEC
Confidence 4445543 355555554 22457789999999999999999999775310 0477888 566554
No 372
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.00 E-value=5.1e-06 Score=82.41 Aligned_cols=42 Identities=7% Similarity=0.118 Sum_probs=36.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+|++++|+||||||||||++.|++... +++|+| +.|.++..
T Consensus 272 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 314 (491)
T PRK10982 272 HKGEILGIAGLVGAKRTDIVETLFGIRE-----KSAGTITLHGKKINN 314 (491)
T ss_pred eCCcEEEEecCCCCCHHHHHHHHcCCCc-----CCccEEEECCEECCC
Confidence 6788999999999999999999998776 889999 56766643
No 373
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.00 E-value=6.4e-06 Score=81.77 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=35.6
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecccc
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMD 78 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~ 78 (298)
.-.+|++++|+|+||||||||++.|+++.. +++|.+ |.|.+
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~-----P~~G~i~~~g~~ 354 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAGLLP-----PSSGSIIFDGQD 354 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEEeCcc
Confidence 336788999999999999999999998887 888888 67766
No 374
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.00 E-value=5.9e-06 Score=70.97 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=42.1
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecc
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCD 76 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g 76 (298)
-.++.|+.+.-. +. .++..-+|++++|+|.||||||||+++|+..+. +|+|+| |+.
T Consensus 11 ~lsk~Yg~~~gc----~~--vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-----p~~G~v~Y~~ 67 (258)
T COG4107 11 GLSKLYGPGKGC----RD--VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-----PDAGTVTYRM 67 (258)
T ss_pred hhhhhhCCCcCc----cc--cceeecCCcEEEEEecCCCcHHhHHHHHhcccC-----CCCCeEEEEc
Confidence 356777555421 22 233446688999999999999999999998887 899998 754
No 375
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.00 E-value=3.2e-06 Score=84.64 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=30.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
.+|++++|+||||||||||++.|++.+. +++|.|+
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~ 377 (530)
T PRK15064 343 EAGERLAIIGENGVGKTTLLRTLVGELE-----PDSGTVK 377 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEE
Confidence 5678999999999999999999998765 7777774
No 376
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.99 E-value=6.2e-06 Score=75.25 Aligned_cols=64 Identities=13% Similarity=0.060 Sum_probs=41.9
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
..+..|++ ...+.++++ .-.+|++++|+||||||||||++.|++.....--++++|+| +.|.++
T Consensus 21 ~l~~~~~~-~~vl~~vs~-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~ 85 (265)
T PRK14252 21 KLNFYYGG-YQALKNINM-----MVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV 85 (265)
T ss_pred EEEEEECC-eeeeeeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccc
Confidence 34555653 245555544 22467799999999999999999999875411001378888 455443
No 377
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.98 E-value=5.2e-06 Score=82.84 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=35.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+|++++|+||||||||||++.|++.++ +++|.| +.|.++.
T Consensus 287 ~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~ 328 (510)
T PRK15439 287 RAGEILGLAGVVGAGRTELAETLYGLRP-----ARGGRIMLNGKEIN 328 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEECC
Confidence 7789999999999999999999998776 788988 5676664
No 378
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.98 E-value=3.4e-06 Score=84.96 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=31.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD 76 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g 76 (298)
.+|++++|+||||||||||++.|++.+. +++|.|+-+
T Consensus 346 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~ 382 (552)
T TIGR03719 346 PPGGIVGVIGPNGAGKSTLFRMITGQEQ-----PDSGTIKIG 382 (552)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEEC
Confidence 5678999999999999999999998765 778888533
No 379
>KOG0054|consensus
Probab=97.98 E-value=1.1e-05 Score=87.56 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=73.5
Q ss_pred chhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH----Hc
Q psy8556 16 PQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE----RE 90 (298)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e----~~ 90 (298)
|+....+++++. .=++++-|||+|.||||||||+.+|-+... +.+|.| -+|.||.+ ....+ +.
T Consensus 1150 p~lp~VLk~is~-----~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e-----~~~G~I~IDgvdI~~--igL~dLRsrls 1217 (1381)
T KOG0054|consen 1150 PNLPLVLKGISF-----TIKPGEKVGIVGRTGAGKSSLILALFRLVE-----PAEGEILIDGVDISK--IGLHDLRSRLS 1217 (1381)
T ss_pred CCCcchhcCceE-----EEcCCceEEEeCCCCCCHHHHHHHHHHhcC-----ccCCeEEEcCeeccc--ccHHHHHhcCe
Confidence 444455555555 114456799999999999999999988766 667777 47777764 22222 23
Q ss_pred ccccc-------cccccCcCccchHHHHHHHH-----HHhhHHHhhcCCceEEEchhHH---------HHHHHHcc
Q psy8556 91 ITPHH-------LIDIIEPTKSYSVIQFCEDA-----LFSIKNILKKKKLPLLVGGTML---------YFKALRDG 145 (298)
Q Consensus 91 ~v~~~-------l~~~~~~~e~~s~~~f~~~~-----~~~i~~i~~~~~~~IlvGGt~~---------y~~~ll~~ 145 (298)
-+|+. +-..++|.+.|+-.+-.+.. .+.+......-+..|-.||.++ ..+|+++.
T Consensus 1218 IIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~ 1293 (1381)
T KOG0054|consen 1218 IIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRK 1293 (1381)
T ss_pred eeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhcc
Confidence 34553 22236777777765544422 2334333334556788899885 34777765
No 380
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.97 E-value=3.6e-06 Score=84.84 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=31.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD 76 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g 76 (298)
.+|++++|+||||||||||++.|++.+. +++|.|+.+
T Consensus 348 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~ 384 (556)
T PRK11819 348 PPGGIVGIIGPNGAGKSTLFKMITGQEQ-----PDSGTIKIG 384 (556)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEC
Confidence 5678999999999999999999998765 788888543
No 381
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.96 E-value=5e-06 Score=68.02 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=29.2
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+|.++||+||||||+++.|++.++..+|+.|.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~ 32 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDE 32 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHH
Confidence 58999999999999999999999888888875
No 382
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.96 E-value=1.7e-05 Score=88.41 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=34.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|+.|+|+|+||||||||++.|++.+. .+|.| ..|.++.+
T Consensus 1243 ~~GekvaIvGrSGsGKSTLl~lL~rl~~------~~G~I~IdG~di~~ 1284 (1490)
T TIGR01271 1243 EGGQRVGLLGRTGSGKSTLLSALLRLLS------TEGEIQIDGVSWNS 1284 (1490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEccc
Confidence 5678899999999999999999998763 47888 58888764
No 383
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.96 E-value=5.9e-05 Score=63.44 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=32.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+|+++.|+||||||||||..-+++.+.+.. ++ +|.+ ..+.++.
T Consensus 26 a~GeivtlMGPSGcGKSTLls~~~G~La~~F-~~-~G~~~l~~~~l~ 70 (213)
T COG4136 26 AKGEIVTLMGPSGCGKSTLLSWMIGALAGQF-SC-TGELWLNEQRLD 70 (213)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhhcccCc-ce-eeEEEECCeecc
Confidence 5688999999999999999999999886333 12 3444 3444443
No 384
>PRK13948 shikimate kinase; Provisional
Probab=97.96 E-value=1.1e-05 Score=70.06 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=32.8
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.+++..|+|+|+.||||||+++.|++.++..+|..|.
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~ 43 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDR 43 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCH
Confidence 3556789999999999999999999999999987774
No 385
>PLN02796 D-glycerate 3-kinase
Probab=97.95 E-value=8.4e-06 Score=77.12 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=46.7
Q ss_pred HHhhhcccC-chhhhhhccccccccc---cccCCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCC
Q psy8556 7 VLDRDTETD-PQQRQLTADFRRIRTG---KLLFRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDS 70 (298)
Q Consensus 7 ~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds 70 (298)
-.++..+.| |....++..++...+. ....++-+|+|+||+|||||||++.|++.+. ...|+.|+
T Consensus 66 ~~~~~~~~~~P~~~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 66 QKARVYHYYLPVYLWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 345556666 8888888887774321 1224678999999999999999999999885 24566666
No 386
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.95 E-value=8e-06 Score=81.69 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=39.3
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
..+.+| ++..++.+.+. .-.+|..|+|+|+||+|||||++.|++... +|+|.|.
T Consensus 8 ~ls~~~-g~~~l~~~~~l-----~~~~G~riGLvG~NGaGKSTLLkilaG~~~-----~~~G~i~ 61 (530)
T COG0488 8 NLSLAY-GDRPLLENVSL-----TLNPGERIGLVGRNGAGKSTLLKILAGELE-----PDSGEVT 61 (530)
T ss_pred eeEEee-CCceeecCCcc-----eeCCCCEEEEECCCCCCHHHHHHHHcCCCc-----CCCCeEe
Confidence 345666 44455555444 224466799999999999999999998876 7777773
No 387
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.94 E-value=5.4e-05 Score=72.58 Aligned_cols=128 Identities=16% Similarity=0.252 Sum_probs=74.8
Q ss_pred ccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC-----CCCHHHHcccccccccccCcC-
Q psy8556 31 GKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN-----KPSIIEREITPHHLIDIIEPT- 103 (298)
Q Consensus 31 ~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~-----kp~~~e~~~v~~~l~~~~~~~- 103 (298)
+...++|+.++|+|.||||||||..+|.++++ .+ |+| |.|.++... .|-..+++.+.+.-++.++|.
T Consensus 307 sl~L~~gqTlGlVGESGSGKsTlG~allrL~~-----s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRm 380 (534)
T COG4172 307 SLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-----SQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRM 380 (534)
T ss_pred eeEecCCCeEEEEecCCCCcchHHHHHHhhcC-----cC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCccc
Confidence 34457889999999999999999999988876 44 777 788887643 233345555555444434331
Q ss_pred --------------ccchHHHHHHHHHHhhHHH----hhcCCce-EEEchhH---HHHHHHHcc----CCCCCCC--CHH
Q psy8556 104 --------------KSYSVIQFCEDALFSIKNI----LKKKKLP-LLVGGTM---LYFKALRDG----INKLPPA--NLK 155 (298)
Q Consensus 104 --------------e~~s~~~f~~~~~~~i~~i----~~~~~~~-IlvGGt~---~y~~~ll~~----~~~~p~~--d~~ 155 (298)
...+..+-...+.+.+.+. ..+++.| =++||-- ...++++-. +.|.|.+ |-.
T Consensus 381 tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~S 460 (534)
T COG4172 381 TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS 460 (534)
T ss_pred CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence 1223333333333333322 1234445 4788866 455777643 3456654 555
Q ss_pred HHHHHHHHH
Q psy8556 156 LRTKFNIDI 164 (298)
Q Consensus 156 lr~~l~~~~ 164 (298)
++..+-+.+
T Consensus 461 VQaQvv~LL 469 (534)
T COG4172 461 VQAQVLDLL 469 (534)
T ss_pred HHHHHHHHH
Confidence 555554443
No 388
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.94 E-value=7.4e-06 Score=68.98 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=28.0
Q ss_pred EEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 40 VAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
|+|+||+||||||+++.|++.++..+++.|+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~ 31 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDD 31 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCcc
Confidence 4799999999999999999999888887776
No 389
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.94 E-value=5e-06 Score=85.53 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=38.3
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
+..||++..++.++++ .-++|++++|+||||||||||++.|++.++ +++|+++
T Consensus 458 ~~~~~~~~~il~~isl-----~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-----~~~G~i~ 510 (659)
T TIGR00954 458 PLVTPNGDVLIESLSF-----EVPSGNHLLICGPNGCGKSSLFRILGELWP-----VYGGRLT 510 (659)
T ss_pred EEECCCCCeeeecceE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEe
Confidence 4455544445555544 225677899999999999999999999876 5666664
No 390
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.93 E-value=7.3e-06 Score=82.80 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=35.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
++|+.++|+||||||||||++.|++.++ +++|+| +.|.++.
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~i~~~g~~~~ 380 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHFD-----VSEGDIRFHDIPLT 380 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEEHh
Confidence 6788999999999999999999998887 889998 5776664
No 391
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.93 E-value=1.1e-05 Score=69.60 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=27.2
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEII 66 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~ii 66 (298)
.|++++|+|||||||||+++.|++.++...+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i 32 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFI 32 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 4789999999999999999999999875444
No 392
>PRK06217 hypothetical protein; Validated
Probab=97.93 E-value=9.8e-06 Score=69.90 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=29.9
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.|+|+|++||||||+++.|++.++.++++.|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~ 34 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDD 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence 48999999999999999999999988888887
No 393
>PRK13949 shikimate kinase; Provisional
Probab=97.93 E-value=8.8e-06 Score=69.62 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=28.9
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
-|+|+|++||||||+++.||+.++...++.|.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 48999999999999999999999988887774
No 394
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.90 E-value=1.4e-05 Score=67.93 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=23.7
Q ss_pred ECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 43 LGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 43 ~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+|||||||||+++.|++.++...++.|.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~ 28 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDF 28 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCcc
Confidence 5999999999999999999866665553
No 395
>PRK14527 adenylate kinase; Provisional
Probab=97.89 E-value=1.1e-05 Score=70.02 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=31.5
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.+++++|+|+||+||||||+++.|+..++...++.+.
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd 39 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGD 39 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccH
Confidence 4578999999999999999999999998876665543
No 396
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.89 E-value=4.2e-05 Score=65.52 Aligned_cols=80 Identities=18% Similarity=0.247 Sum_probs=49.1
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHHHHh
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFS 118 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~~ 118 (298)
-|+++|+-||||||+.+.||+.++..++..|. . ++.... .++....+.+--..|.+.-.+.
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~--~---------------Ie~~~g--~sI~eIF~~~GE~~FR~~E~~v 64 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ--E---------------IEKRTG--MSIAEIFEEEGEEGFRRLETEV 64 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCcccchH--H---------------HHHHHC--cCHHHHHHHHhHHHHHHHHHHH
Confidence 48999999999999999999999977765553 1 000000 0111111122223455555667
Q ss_pred hHHHhhcCCceEEEchhHH
Q psy8556 119 IKNILKKKKLPLLVGGTML 137 (298)
Q Consensus 119 i~~i~~~~~~~IlvGGt~~ 137 (298)
+.++...+..+|-.||-.+
T Consensus 65 l~~l~~~~~~ViaTGGG~v 83 (172)
T COG0703 65 LKELLEEDNAVIATGGGAV 83 (172)
T ss_pred HHHHhhcCCeEEECCCccc
Confidence 7777777766666666554
No 397
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.88 E-value=3e-05 Score=77.49 Aligned_cols=105 Identities=17% Similarity=0.057 Sum_probs=71.2
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHH
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFC 112 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~ 112 (298)
.+.++++|+++|++||||||+++.++...+..+||.|.. + .+
T Consensus 365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l--------g-----------------------------~~- 406 (526)
T TIGR01663 365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL--------G-----------------------------ST- 406 (526)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH--------H-----------------------------HH-
Confidence 345689999999999999999999998888788877741 0 01
Q ss_pred HHHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccCCCCChHH
Q psy8556 113 EDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRHI 192 (298)
Q Consensus 113 ~~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~~~~r~~ 192 (298)
..+...+.+.+..|+.+|+ |-.-.+.+.|+++.+.+.+.|.....-+ +..|.++
T Consensus 407 ~~~~~~a~~~L~~G~sVVI----------------DaTn~~~~~R~~~i~lAk~~gv~v~~i~----------~~~p~e~ 460 (526)
T TIGR01663 407 QNCLTACERALDQGKRCAI----------------DNTNPDAASRAKFLQCARAAGIPCRCFL----------FNAPLAQ 460 (526)
T ss_pred HHHHHHHHHHHhCCCcEEE----------------ECCCCCHHHHHHHHHHHHHcCCeEEEEE----------eCCCHHH
Confidence 1223345566677776555 2333457778888777776664311001 3357899
Q ss_pred HHHHHHHHH
Q psy8556 193 LHKRISDRF 201 (298)
Q Consensus 193 L~~ri~~Rv 201 (298)
+.+|+..|-
T Consensus 461 ~~~Rn~~R~ 469 (526)
T TIGR01663 461 AKHNIAFRE 469 (526)
T ss_pred HHHHHHhhc
Confidence 999999885
No 398
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.88 E-value=1.2e-05 Score=80.03 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=34.2
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccc
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM 77 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~ 77 (298)
++.+|+|.||+||||||+++.|++.++..+ .|+|.+|+..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~--~d~g~~YR~~ 322 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLY--LDTGAMYRAV 322 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeE--ecCCceehHH
Confidence 678999999999999999999999998555 4666689864
No 399
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.87 E-value=1.2e-05 Score=80.20 Aligned_cols=38 Identities=24% Similarity=0.182 Sum_probs=32.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM 77 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~ 77 (298)
.+|++++|+||||||||||++.|++.+. +++|+| +.|.
T Consensus 48 ~~GEivgIiGpNGSGKSTLLkiLaGLl~-----P~sGeI~I~G~ 86 (549)
T PRK13545 48 PEGEIVGIIGLNGSGKSTLSNLIAGVTM-----PNKGTVDIKGS 86 (549)
T ss_pred eCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCceEEEECCE
Confidence 5678999999999999999999998876 788888 4443
No 400
>PRK06696 uridine kinase; Validated
Probab=97.87 E-value=1.6e-05 Score=70.89 Aligned_cols=40 Identities=43% Similarity=0.434 Sum_probs=31.7
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC---CeE--eecCCceEec
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP---CEI--ISIDSALVYC 75 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~---~~i--is~Ds~qvy~ 75 (298)
+..+.+|+|.|++|||||||+..|+..++ ..+ ++.|+ +|.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Dd--f~~ 63 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDD--FHN 63 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccc--ccC
Confidence 44678999999999999999999999883 333 45776 553
No 401
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.86 E-value=1.2e-05 Score=65.92 Aligned_cols=31 Identities=32% Similarity=0.434 Sum_probs=28.2
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
+|+|+|++||||||+++.|+..++.++++.|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 5899999999999999999999988887776
No 402
>KOG0055|consensus
Probab=97.86 E-value=3.2e-05 Score=82.78 Aligned_cols=106 Identities=20% Similarity=0.182 Sum_probs=64.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCCCC--HHHHcccccc--cccc------cCcC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNKPS--IIEREITPHH--LIDI------IEPT 103 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~kp~--~~e~~~v~~~--l~~~------~~~~ 103 (298)
++|+.++|||||||||||+...|-+.++ +++|.|+ .|.++.+-++. ...+..|.+. |++. .-..
T Consensus 1014 ~~GqTvALVG~SGsGKSTvI~LLeRfYd-----p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~ 1088 (1228)
T KOG0055|consen 1014 RAGQTVALVGPSGSGKSTVISLLERFYD-----PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGS 1088 (1228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccC
Confidence 5677899999999999999999999998 8899885 67777754432 1233333332 1110 0011
Q ss_pred ccchHHHHHH-----HHHHhhHHHhhcCCceEE------EchhH---HHHHHHHcc
Q psy8556 104 KSYSVIQFCE-----DALFSIKNILKKKKLPLL------VGGTM---LYFKALRDG 145 (298)
Q Consensus 104 e~~s~~~f~~-----~~~~~i~~i~~~~~~~Il------vGGt~---~y~~~ll~~ 145 (298)
+..+..+-.+ .++..|..+.+.-++++- +||-. -..+|++++
T Consensus 1089 ~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1089 EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 1122222222 234556666665555553 45544 367999976
No 403
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.86 E-value=1.2e-05 Score=68.86 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=28.3
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
.++|+|+||+||||||+++.|++.++...++.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g 35 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTG 35 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 468999999999999999999998876665543
No 404
>PRK07667 uridine kinase; Provisional
Probab=97.85 E-value=6.1e-06 Score=71.95 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=29.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds 70 (298)
....+|+|.|++||||||++..|+..++ ..+++.|+
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 3447999999999999999999998763 45788886
No 405
>PRK13946 shikimate kinase; Provisional
Probab=97.85 E-value=1.3e-05 Score=69.22 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=30.3
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+..|+++|++||||||+++.||+.++.+++..|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4579999999999999999999999988887774
No 406
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.83 E-value=1.9e-05 Score=70.99 Aligned_cols=55 Identities=22% Similarity=0.386 Sum_probs=39.5
Q ss_pred chhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 16 PQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++++.+++|++- +..|. -.+|+||||||||||++.+++..+ +.++.+ ..|...++
T Consensus 41 r~gk~iL~~isW~V~~ge------~W~I~G~NGsGKTTLL~ll~~~~~-----pssg~~~~~G~~~G~ 97 (257)
T COG1119 41 RNGKKILGDLSWQVNPGE------HWAIVGPNGAGKTTLLSLLTGEHP-----PSSGDVTLLGRRFGK 97 (257)
T ss_pred ECCEeeccccceeecCCC------cEEEECCCCCCHHHHHHHHhcccC-----CCCCceeeeeeeccC
Confidence 455666666666 55554 499999999999999999998876 445555 34555553
No 407
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.83 E-value=1.9e-05 Score=69.08 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=40.5
Q ss_pred cccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 12 TETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 12 ~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+-+|++. +..+.+++. +- .+|++++++||||||||||++.+|+... ++.|.| ..|..|.
T Consensus 10 sl~y~g~~~~~le~vsL---~i--a~ge~vv~lGpSGcGKTTLLnl~AGf~~-----P~~G~i~l~~r~i~ 70 (259)
T COG4525 10 SLSYEGKPRSALEDVSL---TI--ASGELVVVLGPSGCGKTTLLNLIAGFVT-----PSRGSIQLNGRRIE 70 (259)
T ss_pred EEecCCcchhhhhccce---ee--cCCCEEEEEcCCCccHHHHHHHHhcCcC-----cccceEEECCEecc
Confidence 3455443 344455444 21 3467899999999999999999998766 777777 4555554
No 408
>KOG3308|consensus
Probab=97.83 E-value=3.6e-05 Score=67.23 Aligned_cols=40 Identities=33% Similarity=0.604 Sum_probs=34.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC-CeEeecCCceEecc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP-CEIISIDSALVYCD 76 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~-~~iis~Ds~qvy~g 76 (298)
+|--+|+|.|.|.||||||++.|...++ +.+|+-|. +|+.
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDD--FyKp 42 (225)
T KOG3308|consen 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDD--FYKP 42 (225)
T ss_pred ceEEEEEeecccCCCHhHHHHHHHHHccCCeeecccc--ccCc
Confidence 3457899999999999999999999996 67999997 7753
No 409
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.81 E-value=1.8e-05 Score=65.65 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=28.5
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+++|+|++||||||+++.|+..++..+++.|.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~ 32 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDD 32 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcc
Confidence 47899999999999999999998877777765
No 410
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.80 E-value=1.5e-05 Score=70.96 Aligned_cols=38 Identities=34% Similarity=0.536 Sum_probs=32.0
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccc
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM 77 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~ 77 (298)
.+|+|.||+||||||+++.|++.++..++ |+|.+|+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~--~~g~~~r~~ 40 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYL--DSGAMYRAI 40 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee--eCchHHHHH
Confidence 47999999999999999999999987665 566677654
No 411
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.79 E-value=1.4e-05 Score=70.51 Aligned_cols=38 Identities=34% Similarity=0.507 Sum_probs=33.3
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccc
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM 77 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~ 77 (298)
.+|+|-||+||||||+++.||..++... .|+|-+|+-.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~y--ldTGamYRa~ 42 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHY--LDTGAMYRAV 42 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCe--ecccHHHHHH
Confidence 6899999999999999999999998666 5888888654
No 412
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.79 E-value=0.00011 Score=71.36 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=42.3
Q ss_pred cCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCce
Q psy8556 14 TDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSAL 72 (298)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~q 72 (298)
.||+-.-..+++++...+..-..+++|+++||||.||||+++.||+.+. +|+|.
T Consensus 344 ~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik-----Pdeg~ 397 (591)
T COG1245 344 EYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK-----PDEGS 397 (591)
T ss_pred ecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc-----CCCCC
Confidence 3566555566777755555557899999999999999999999998776 77764
No 413
>PRK13409 putative ATPase RIL; Provisional
Probab=97.79 E-value=1.8e-05 Score=80.39 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=31.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC 75 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~ 75 (298)
.+|++++|+||||||||||++.|++.+. +++|.|+.
T Consensus 363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-----p~~G~I~~ 398 (590)
T PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGVLK-----PDEGEVDP 398 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEE
Confidence 6789999999999999999999998876 78888753
No 414
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.79 E-value=1.8e-05 Score=70.71 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=26.5
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+.++.+++|+||||||||||++.|++.++
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45689999999999999999999999885
No 415
>PRK14530 adenylate kinase; Provisional
Probab=97.78 E-value=2.5e-05 Score=69.08 Aligned_cols=34 Identities=18% Similarity=0.411 Sum_probs=29.1
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+..|+|+||+||||||+++.||+.++...|+.+.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~ 36 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGD 36 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccH
Confidence 4469999999999999999999999977775543
No 416
>PRK06762 hypothetical protein; Provisional
Probab=97.78 E-value=1.9e-05 Score=66.66 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=27.1
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCC--CeEeecC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIP--CEIISID 69 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~--~~iis~D 69 (298)
+.+|+|+|++||||||+++.|++.++ ..+++.|
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D 36 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQD 36 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHH
Confidence 57899999999999999999999884 3344444
No 417
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.77 E-value=1.9e-05 Score=67.49 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=23.6
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+++++|+||||||||||++.|+..++
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999999875
No 418
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=97.77 E-value=1.4e-05 Score=69.84 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=51.9
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-cc-ccCCCCCCCHHHHcccccccccccCcCccchHHHH
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CD-MDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQF 111 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g-~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f 111 (298)
-.+|++-+|+||||+||||++-.|.+..+ ++.|.+| .| .++....-....+.++...+ +.-...+..++.+.
T Consensus 28 v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-----p~~G~v~f~g~~dl~~~~e~~IAr~GIGRKF-Q~PtVfe~ltV~eN 101 (249)
T COG4674 28 VDPGELRVLIGPNGAGKTTLMDVITGKTR-----PQEGEVLFDGDTDLTKLPEHRIARAGIGRKF-QKPTVFENLTVREN 101 (249)
T ss_pred ecCCeEEEEECCCCCCceeeeeeecccCC-----CCcceEEEcCchhhccCCHHHHHHhccCccc-cCCeehhhccHHHH
Confidence 35678899999999999999999998877 8888884 55 56653332333444554432 22344567777776
Q ss_pred HHHH
Q psy8556 112 CEDA 115 (298)
Q Consensus 112 ~~~~ 115 (298)
.+.+
T Consensus 102 LelA 105 (249)
T COG4674 102 LELA 105 (249)
T ss_pred HHHH
Confidence 6544
No 419
>PRK12338 hypothetical protein; Provisional
Probab=97.77 E-value=5.1e-05 Score=71.22 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=29.2
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEe-ecC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEII-SID 69 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~ii-s~D 69 (298)
+|.+|+|.|++||||||++..||..++...+ +.|
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD 37 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETD 37 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccCh
Confidence 5789999999999999999999999986654 444
No 420
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.77 E-value=2.2e-05 Score=67.24 Aligned_cols=32 Identities=31% Similarity=0.348 Sum_probs=28.7
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+|+|+||+||||||+++.|++.++...++++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d 32 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGD 32 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECCh
Confidence 48899999999999999999999988887654
No 421
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.77 E-value=2.8e-05 Score=67.35 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=27.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
+.+..++|+|||||||||+++.|++.++ ++.+.+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~-----~~~~~i 56 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIP-----PDERII 56 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcC-----CCCCEE
Confidence 3467899999999999999999998876 455544
No 422
>PLN03140 ABC transporter G family member; Provisional
Probab=97.76 E-value=2.8e-05 Score=86.22 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=34.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC---CceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID---SALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D---s~qv-y~g~~i~ 80 (298)
++|++++|+||||||||||++.|++.+. ++ +|+| |+|.++.
T Consensus 189 ~~Ge~~~llGpnGSGKSTLLk~LaG~l~-----~~~~~~G~I~~nG~~~~ 233 (1470)
T PLN03140 189 KPSRMTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGEITYNGYRLN 233 (1470)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCcceeEEEECCEech
Confidence 5677899999999999999999999876 44 7888 7887764
No 423
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.75 E-value=1.9e-05 Score=68.07 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKIS 58 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La 58 (298)
++|++++|+||||||||||++.+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999999885
No 424
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.74 E-value=2.7e-05 Score=67.04 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=32.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..|+++-++||||+|||||+..+|+.++ -||.| +.|.++.
T Consensus 23 ~aGe~~HliGPNGaGKSTLLA~lAGm~~------~sGsi~~~G~~l~ 63 (248)
T COG4138 23 RAGEILHLVGPNGAGKSTLLARMAGMTS------GSGSIQFAGQPLE 63 (248)
T ss_pred ccceEEEEECCCCccHHHHHHHHhCCCC------CCceEEECCcchh
Confidence 4578999999999999999999999875 35556 6776654
No 425
>PRK03839 putative kinase; Provisional
Probab=97.74 E-value=2.7e-05 Score=66.76 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=29.3
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.|+|+|++||||||+++.||+.++..+++.|.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~ 33 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTE 33 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhh
Confidence 58999999999999999999999988887775
No 426
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.74 E-value=2.4e-05 Score=71.40 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=33.6
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecccc
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMD 78 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~ 78 (298)
-++|.+++++||||+||||+++.|.+.+. |++|.| ..|.+
T Consensus 47 IP~G~ivgflGaNGAGKSTtLKmLTGll~-----p~~G~v~V~G~~ 87 (325)
T COG4586 47 IPKGEIVGFLGANGAGKSTTLKMLTGLLL-----PTSGKVRVNGKD 87 (325)
T ss_pred cCCCcEEEEEcCCCCcchhhHHHHhCccc-----cCCCeEEecCcC
Confidence 37889999999999999999999987665 888888 45543
No 427
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.73 E-value=5.6e-05 Score=74.06 Aligned_cols=43 Identities=30% Similarity=0.278 Sum_probs=36.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCe-EeecCC-ceEeccc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCE-IISIDS-ALVYCDM 77 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~-iis~Ds-~qvy~g~ 77 (298)
++|.+|.++|+|||||||++..||..++.. +|+.|+ .+++++.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~ 297 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAM 297 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhh
Confidence 458899999999999999999999999976 789997 4555544
No 428
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.70 E-value=2.9e-05 Score=61.57 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKIS 58 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La 58 (298)
+++++++|+||||||||||++.+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 457899999999999999999986
No 429
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.70 E-value=6.8e-05 Score=64.29 Aligned_cols=91 Identities=20% Similarity=0.168 Sum_probs=54.0
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHH-cccccccccccCcCccchHHHHHHHHHH
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIER-EITPHHLIDIIEPTKSYSVIQFCEDALF 117 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~-~~v~~~l~~~~~~~e~~s~~~f~~~~~~ 117 (298)
++.|+|++||||||++..++..++..++ | +.|..|...|+ ..+.+|...- +..-.++..+.. ..+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~-------~----iat~~~~~~e~~~ri~~h~~~R--~~~w~t~E~~~~-l~~ 68 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVL-------Y----IATAQPFDDEMAARIAHHRQRR--PAHWQTVEEPLD-LAE 68 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcE-------e----CcCCCCChHHHHHHHHHHHhcC--CCCCeEeccccc-HHH
Confidence 6899999999999999999987653332 2 34555555554 6676765432 221112222221 222
Q ss_pred hhHHHhhcCCceEEEchhHHHHHHHHc
Q psy8556 118 SIKNILKKKKLPLLVGGTMLYFKALRD 144 (298)
Q Consensus 118 ~i~~i~~~~~~~IlvGGt~~y~~~ll~ 144 (298)
.+......+. .|++-+...|+..++.
T Consensus 69 ~i~~~~~~~~-~VlID~Lt~~~~n~l~ 94 (170)
T PRK05800 69 LLRADAAPGR-CVLVDCLTTWVTNLLF 94 (170)
T ss_pred HHHhhcCCCC-EEEehhHHHHHHHHhc
Confidence 3333223333 5788888888877764
No 430
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.70 E-value=3e-05 Score=86.21 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=34.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec--cccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC--DMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~--g~~i~ 80 (298)
++|++++|+||||||||||++.|++.+. +++|+|+- |.++.
T Consensus 409 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 409 TEGKTYAFVGESGCGKSTILKLIERLYD-----PTEGDIIINDSHNLK 451 (1466)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhcc-----CCCCeEEEeCCcchh
Confidence 5677899999999999999999999987 88999853 45554
No 431
>KOG0056|consensus
Probab=97.69 E-value=3.1e-05 Score=75.71 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=42.9
Q ss_pred ccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 13 ETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
=.|-.+.-.+.|+++ +-.+|++++++||||+||||+++.|-+.+. ..+|.| ..|.||.
T Consensus 545 F~Y~p~k~vl~disF-----~v~pGktvAlVG~SGaGKSTimRlLfRffd-----v~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 545 FAYDPGKPVLSDISF-----TVQPGKTVALVGPSGAGKSTIMRLLFRFFD-----VNSGSITIDGQDIR 603 (790)
T ss_pred EecCCCCceeecceE-----EecCCcEEEEECCCCCchhHHHHHHHHHhh-----ccCceEEEcCchHH
Confidence 345444444555544 335678999999999999999999999987 667777 6777775
No 432
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.69 E-value=3.5e-05 Score=75.67 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=33.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCc-eE-eccccCCCCCCCHHHHc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSA-LV-YCDMDIGTNKPSIIERE 90 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~-qv-y~g~~i~t~kp~~~e~~ 90 (298)
.+|++++|+||||||||||++ ++... +++| .| +.|.++.. |+..++.
T Consensus 30 ~~GEiv~L~G~SGsGKSTLLr--~~l~~-----~~sGg~I~ldg~~~~~--~~~~ai~ 78 (504)
T TIGR03238 30 PSSSLLFLCGSSGDGKSEILA--ENKRK-----FSEGYEFFLDATHSFS--PNKNAME 78 (504)
T ss_pred cCCCEEEEECCCCCCHHHHHh--cCCCC-----CCCCCEEEECCEECCC--CCHHHHH
Confidence 568899999999999999999 33333 5666 57 67777764 4444433
No 433
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.68 E-value=4.4e-05 Score=65.43 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=32.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
+.|+.+++-||||||||||++.|...+. +|+|||.
T Consensus 35 ~aGECvvL~G~SG~GKStllr~LYaNY~-----~d~G~I~ 69 (235)
T COG4778 35 NAGECVVLHGPSGSGKSTLLRSLYANYL-----PDEGQIL 69 (235)
T ss_pred cCccEEEeeCCCCCcHHHHHHHHHhccC-----CCCceEE
Confidence 5688999999999999999999998887 9999994
No 434
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.68 E-value=3.2e-05 Score=66.06 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=26.5
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+..+|.+|+|+|++||||||+++.|++.+.
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346788999999999999999999998875
No 435
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.67 E-value=3.7e-05 Score=63.63 Aligned_cols=31 Identities=16% Similarity=0.440 Sum_probs=28.4
Q ss_pred EEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 40 VAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
|+|+|++||||||+++.|+..++...++.|.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~ 32 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDE 32 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 7899999999999999999999988887774
No 436
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.67 E-value=3.3e-05 Score=66.78 Aligned_cols=36 Identities=28% Similarity=0.495 Sum_probs=28.0
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD 76 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g 76 (298)
.|.|+||+||||||+|+.|++.++..-+ |.+.++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl--stgd~~r~ 37 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL--DTGDILRA 37 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE--cHhHHhHh
Confidence 4789999999999999999999765444 44445543
No 437
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.66 E-value=4e-05 Score=65.51 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=25.9
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEI 65 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~i 65 (298)
++++|+|.|++||||||+++.|+..++...
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~ 30 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPW 30 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 367899999999999999999998876443
No 438
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.65 E-value=2.7e-05 Score=80.14 Aligned_cols=64 Identities=27% Similarity=0.307 Sum_probs=45.7
Q ss_pred hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecccc
Q psy8556 9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMD 78 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~ 78 (298)
..++++||+= ..++..+..... ++..+|+|.||+||||||+++.||+.++.++ .|++++|+...
T Consensus 418 ~~v~ksyP~F---~~~l~~Lg~~~~-~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~--~~~~~~~~~~~ 481 (661)
T PRK11860 418 KCVAKTFPDY---FEALFSVAQADA-DRVPVICIDGPTASGKGTVAARVAEALGYHY--LDSGALYRLTA 481 (661)
T ss_pred CeeecCCCCh---HHHHHHhcCCcc-cCcceEEeeCCCCCCHHHHHHHHHHHhCCeE--ecHHHhhhHHH
Confidence 3467888873 333333222221 2245899999999999999999999999887 57777987653
No 439
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.65 E-value=0.00059 Score=58.16 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=78.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe---ccccCCCCCCCHHHHcccc---------cccccccCc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY---CDMDIGTNKPSIIEREITP---------HHLIDIIEP 102 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy---~g~~i~t~kp~~~e~~~v~---------~~l~~~~~~ 102 (298)
+.|+.+++.||||+|||||++.|.-+-- ++||+.- ..++.. ..|+......++ +|+...+..
T Consensus 26 ~~getlvllgpsgagkssllr~lnlle~-----p~sg~l~ia~~~fd~s-~~~~~k~i~~lr~~vgmvfqqy~lwphltv 99 (242)
T COG4161 26 PEGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFS-KTPSDKAIRDLRRNVGMVFQQYNLWPHLTV 99 (242)
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHhC-----CCCCeEEecccccccc-cCccHHHHHHHHHhhhhhhhhhccCchhHH
Confidence 4477899999999999999999854322 6777662 233333 233333222221 122222222
Q ss_pred Ccc----------chHHHHHHHHHHhhHHHhh---cCCce-EEEchhH---HHHHHHHcc----CCCCCC--CCHHHHHH
Q psy8556 103 TKS----------YSVIQFCEDALFSIKNILK---KKKLP-LLVGGTM---LYFKALRDG----INKLPP--ANLKLRTK 159 (298)
Q Consensus 103 ~e~----------~s~~~f~~~~~~~i~~i~~---~~~~~-IlvGGt~---~y~~~ll~~----~~~~p~--~d~~lr~~ 159 (298)
.++ ++-.+-...+.+.+..+.- ..+.| -++||-. ...++++-. ++|.|. .||++-..
T Consensus 100 ~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaq 179 (242)
T COG4161 100 QENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179 (242)
T ss_pred HHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHH
Confidence 111 1111222223333322211 23445 4788876 456777743 456664 48888777
Q ss_pred HHHHHHhhCHHHHHHHHhcCCccccCCCCChHHHHHHHHHHHHHHHhcc
Q psy8556 160 FNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQD 208 (298)
Q Consensus 160 l~~~~~~~g~~~l~~~L~~~Dp~~a~~~~~r~~L~~ri~~Rv~~M~~~G 208 (298)
+-..+++.....+.+.+. ...-...++++.||--| ++|
T Consensus 180 vv~iikel~~tgitqviv----------thev~va~k~as~vvym-e~g 217 (242)
T COG4161 180 IVSIIKELAETGITQVIV----------THEVEVARKTASRVVYM-ENG 217 (242)
T ss_pred HHHHHHHHHhcCceEEEE----------EeehhHHHhhhhheEee-ecC
Confidence 655544432211111110 12234556777887654 555
No 440
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.64 E-value=5e-05 Score=54.20 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=21.7
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.+.+..|+|||||||||++.++.-.+
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999886544
No 441
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.63 E-value=4.1e-05 Score=64.77 Aligned_cols=37 Identities=27% Similarity=0.490 Sum_probs=31.3
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccc
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM 77 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~ 77 (298)
+|.|.||+||||||+++.||..++.+++|+ |.+|+++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsa--G~iFR~~ 38 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSA--GTIFREM 38 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeec--cHHHHHH
Confidence 689999999999999999999999888754 4466543
No 442
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.63 E-value=6.3e-05 Score=59.40 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.3
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPC 63 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~ 63 (298)
+..+.|+||+||||||++..|+..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 567999999999999999999998863
No 443
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.62 E-value=3.5e-05 Score=67.55 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=28.3
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIP-----CEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds 70 (298)
|.+++++||||+||||.+..||..+. ..+|++|.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT 39 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence 57899999999999999999987652 45677775
No 444
>PRK13947 shikimate kinase; Provisional
Probab=97.60 E-value=5.7e-05 Score=63.91 Aligned_cols=31 Identities=19% Similarity=0.472 Sum_probs=28.8
Q ss_pred EEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 40 VAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
|+|+|++||||||+++.||..++..+++.|.
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 8999999999999999999999988887775
No 445
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.60 E-value=4.9e-05 Score=60.78 Aligned_cols=34 Identities=26% Similarity=0.600 Sum_probs=28.5
Q ss_pred EEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
|.|.||+|+|||++++.+|+.++..++..+.+.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccc
Confidence 5799999999999999999999877766665333
No 446
>PLN03073 ABC transporter F family; Provisional
Probab=97.59 E-value=2.4e-05 Score=81.14 Aligned_cols=60 Identities=12% Similarity=0.053 Sum_probs=40.5
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM 77 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~ 77 (298)
..+..|+++ .++.++++ .-.+|+.++|+||||||||||++.|++..-.. + +++++| |.+.
T Consensus 182 nls~~y~~~-~ll~~isl-----~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g-~-p~~g~I~~~~Q 242 (718)
T PLN03073 182 NFSISVGGR-DLIVDASV-----TLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDG-I-PKNCQILHVEQ 242 (718)
T ss_pred eEEEEeCCC-EEEECCEE-----EECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-C-CCCCEEEEEec
Confidence 356677543 46777666 22345679999999999999999999753100 2 567777 5443
No 447
>PLN02200 adenylate kinase family protein
Probab=97.59 E-value=6.8e-05 Score=67.56 Aligned_cols=36 Identities=25% Similarity=0.209 Sum_probs=30.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+.+.+|+|+||+||||||++..|++.++...|+++.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gd 76 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGD 76 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccH
Confidence 446789999999999999999999999877665543
No 448
>PLN03130 ABC transporter C family member; Provisional
Probab=97.59 E-value=0.00018 Score=80.92 Aligned_cols=35 Identities=34% Similarity=0.339 Sum_probs=30.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC-ceEe
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS-ALVY 74 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds-~qvy 74 (298)
++|++++|+||||||||||++.|.+.+. +++ |.|.
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-----~~~GG~I~ 676 (1622)
T PLN03130 641 PVGSLVAIVGSTGEGKTSLISAMLGELP-----PRSDASVV 676 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhhc-----cCCCceEE
Confidence 6788999999999999999999999887 666 6663
No 449
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.59 E-value=5.5e-05 Score=63.67 Aligned_cols=31 Identities=35% Similarity=0.554 Sum_probs=28.4
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
+|+|.|++||||||+++.|++.++.++++.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~ 32 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAG 32 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHH
Confidence 6999999999999999999999998887765
No 450
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.58 E-value=5.3e-05 Score=67.92 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.5
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
|.+++|+||||||||||+.+|+..+
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998654
No 451
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.58 E-value=6.5e-05 Score=76.75 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=37.6
Q ss_pred hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 19 RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 19 ~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
+.+++|++. .-++|++++|+||||||||||++.|++...... ..+|+| ++|.++
T Consensus 38 ~~iL~~vs~-----~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~--~~~G~i~~~g~~~ 92 (617)
T TIGR00955 38 KHLLKNVSG-----VAKPGELLAVMGSSGAGKTTLMNALAFRSPKGV--KGSGSVLLNGMPI 92 (617)
T ss_pred cccccCCEE-----EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEEC
Confidence 345555554 224567899999999999999999998764210 136777 577655
No 452
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.58 E-value=6.6e-05 Score=65.71 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=30.3
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.+|+|+|+.||||||+++.|+..++..++++|.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~ 34 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADI 34 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcH
Confidence 369999999999999999999988999998885
No 453
>PRK14532 adenylate kinase; Provisional
Probab=97.58 E-value=6.7e-05 Score=64.68 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=27.9
Q ss_pred EEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 40 VAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
|+|+||+||||||+++.||+.++...|+++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d 33 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGD 33 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeCcH
Confidence 7899999999999999999999988877654
No 454
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.58 E-value=5.8e-05 Score=68.31 Aligned_cols=27 Identities=30% Similarity=0.210 Sum_probs=24.6
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+.+.+|+||||||||||+.+|+..++
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999998876
No 455
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.56 E-value=7.7e-05 Score=54.15 Aligned_cols=23 Identities=48% Similarity=0.642 Sum_probs=21.1
Q ss_pred EEEEECCCchhHHHHHHHHHhhC
Q psy8556 39 KVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+|+|+|++||||||+++.|+..+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 456
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.56 E-value=5.2e-05 Score=67.23 Aligned_cols=25 Identities=36% Similarity=0.390 Sum_probs=22.0
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
++++|+|||||||||++++|...++
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~~G 50 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFVFG 50 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999975544
No 457
>KOG0059|consensus
Probab=97.55 E-value=0.00034 Score=74.40 Aligned_cols=122 Identities=17% Similarity=0.128 Sum_probs=71.8
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe-ccccCCCCCC---CHHHHcccccccccccCcCccchHH
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY-CDMDIGTNKP---SIIEREITPHHLIDIIEPTKSYSVI 109 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy-~g~~i~t~kp---~~~e~~~v~~~l~~~~~~~e~~s~~ 109 (298)
=++++..++.|||||||||+.+.+.+... +++|+++ +|.++.+... ....+...|++ ....+.+|..
T Consensus 588 V~~gecfgLLG~NGAGKtT~f~mltG~~~-----~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~----d~l~~~lT~r 658 (885)
T KOG0059|consen 588 VPPGECFGLLGVNGAGKTTTFKMLTGETK-----PTSGEALIKGHDITVSTDFQQVRKQLGYCPQF----DALWEELTGR 658 (885)
T ss_pred ecCCceEEEecCCCCCchhhHHHHhCCcc-----CCcceEEEecCccccccchhhhhhhcccCCch----hhhhhhccHH
Confidence 36789999999999999999999987766 8999986 6777764322 22344555654 1222333333
Q ss_pred HHHH-----------HHHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----CCCCCC--CCHHHHHHHH
Q psy8556 110 QFCE-----------DALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG----INKLPP--ANLKLRTKFN 161 (298)
Q Consensus 110 ~f~~-----------~~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~----~~~~p~--~d~~lr~~l~ 161 (298)
+... +..+.++.... ...+....||.. ...-|++-. +.|.|. .||.-|+.+.
T Consensus 659 EhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW 738 (885)
T KOG0059|consen 659 EHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLW 738 (885)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence 2221 11112222211 123456788877 344555543 345665 4888777765
Q ss_pred HHH
Q psy8556 162 IDI 164 (298)
Q Consensus 162 ~~~ 164 (298)
..+
T Consensus 739 ~ii 741 (885)
T KOG0059|consen 739 DII 741 (885)
T ss_pred HHH
Confidence 443
No 458
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.54 E-value=8e-05 Score=64.09 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=28.4
Q ss_pred EEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 40 VAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
|+|+||+||||||++..|++.++...+++|.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~ 32 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGD 32 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence 7899999999999999999999988887765
No 459
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.54 E-value=7.5e-05 Score=63.67 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=25.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+|++|+|+|++||||||+++.|++.+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998873
No 460
>PRK04182 cytidylate kinase; Provisional
Probab=97.53 E-value=7.1e-05 Score=63.46 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=27.7
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
+|+|+|++||||||+++.|+..++.+++++|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~ 32 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAG 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHH
Confidence 6899999999999999999999998777543
No 461
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.52 E-value=0.0001 Score=64.38 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=29.3
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.+|+|+|+.||||||+++.|+. ++..++++|.
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~ 34 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADA 34 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecH
Confidence 5799999999999999999988 8888998885
No 462
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.52 E-value=9.7e-05 Score=71.60 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=30.7
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDS 70 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds 70 (298)
..++-+|+|+|++|||||||++.|.+.+. ..+|+.|+
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD 250 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD 250 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence 34678999999999999999999988773 34577776
No 463
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.51 E-value=0.00011 Score=66.06 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.1
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+..|+|+||+||||||+++.||+.++...|+.+.
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gd 39 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMGN 39 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECCh
Confidence 3449999999999999999999999988887775
No 464
>PRK14531 adenylate kinase; Provisional
Probab=97.51 E-value=9.6e-05 Score=63.75 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=27.8
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
.|+|+||+||||||++..||..++...||++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~g 34 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTG 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEecc
Confidence 5889999999999999999999997777654
No 465
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.51 E-value=9.7e-05 Score=68.31 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=29.7
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC-CCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI-PCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l-~~~iis~Ds 70 (298)
+.+|+++|++||||||+++.|++.+ +...++.|.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~ 36 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDD 36 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccH
Confidence 4689999999999999999999998 677777765
No 466
>PLN03232 ABC transporter C family member; Provisional
Probab=97.50 E-value=0.00029 Score=78.72 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=26.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
++|+.++|+||||||||||++.|++.++
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~ 668 (1495)
T PLN03232 641 PVGSLVAIVGGTGEGKTSLISAMLGELS 668 (1495)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 6788999999999999999999999886
No 467
>KOG0061|consensus
Probab=97.48 E-value=0.00019 Score=73.29 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=32.9
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecc
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCD 76 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g 76 (298)
-++|++.+|+||+|||||||+..||+..+.. ...+|+| ++|
T Consensus 53 ~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~--~~~~G~ilvNG 94 (613)
T KOG0061|consen 53 AKPGELLAIMGPSGSGKTTLLNALAGRLNGG--LKLSGEILLNG 94 (613)
T ss_pred EecCeEEEEECCCCCCHHHHHHHHhccccCC--CcceEEEEECC
Confidence 3678899999999999999999999987633 1346777 566
No 468
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.48 E-value=0.00015 Score=67.98 Aligned_cols=42 Identities=17% Similarity=0.453 Sum_probs=36.1
Q ss_pred cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
++......++..|+|+|++||||||+++.|++.++.+++..|
T Consensus 124 ~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 124 LGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred HhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 555656677889999999999999999999999998888665
No 469
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.48 E-value=8.6e-05 Score=65.19 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=22.0
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
+++++|+||||||||||++.|++.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 589999999999999999999864
No 470
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.48 E-value=0.00011 Score=62.28 Aligned_cols=32 Identities=16% Similarity=0.452 Sum_probs=29.0
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.|+|+|++||||||+++.||+.++.++++.|.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 58899999999999999999999988887774
No 471
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.47 E-value=8.5e-05 Score=65.07 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+| +++|+||||||||||++.|+..++
T Consensus 21 ~~g-~~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 21 PPG-LTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHhc
Confidence 345 899999999999999999998764
No 472
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.47 E-value=0.00039 Score=64.80 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=45.3
Q ss_pred HHHHhhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCC
Q psy8556 5 KDVLDRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDS 70 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds 70 (298)
+-++..+++.++....++.++.+ ...++.+|+|+||+|||||||+..|+..+. ..+++.|.
T Consensus 7 ~~~~~~~e~~~~~~~~~~~~~~~-----~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~ 72 (300)
T TIGR00750 7 ARAITLVENRHPEAKQLLDRIMP-----YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDP 72 (300)
T ss_pred HHHHHHHhCCChHHHHHHHhCCc-----ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34566777788877777777665 234578999999999999999999988652 34566663
No 473
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.47 E-value=0.0002 Score=68.79 Aligned_cols=62 Identities=23% Similarity=0.210 Sum_probs=47.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHHHccccccccc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIEREITPHHLID 98 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e~~~v~~~l~~ 98 (298)
..|++++|+|.||||||-.+..+.++++.+-...-+|.| |.|.++. +.+..++..++..-+.
T Consensus 34 ~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll--~~se~~lr~iRG~~I~ 96 (534)
T COG4172 34 EAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL--AASERQLRGVRGNKIG 96 (534)
T ss_pred cCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh--cCCHHHHhhhcccceE
Confidence 456789999999999999999999999865444556777 9998887 4456667766654333
No 474
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.47 E-value=0.0001 Score=63.38 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=28.4
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+|+|+|+.||||||+++.|+. ++..++++|.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~ 31 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADK 31 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCH
Confidence 489999999999999999998 8888998885
No 475
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.45 E-value=0.00012 Score=63.89 Aligned_cols=32 Identities=25% Similarity=0.194 Sum_probs=27.4
Q ss_pred cccccCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 30 TGKLLFRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 30 ~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
++....+|.+++|+|++|||||||++.|++.+
T Consensus 17 ~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 17 EQLHGHKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred HHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444678999999999999999999999876
No 476
>PRK01184 hypothetical protein; Provisional
Probab=97.44 E-value=0.00012 Score=62.81 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=26.6
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
.+|+|+||+||||||+++ +++.++..+++.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~ 32 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMG 32 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhh
Confidence 479999999999999987 7788888888764
No 477
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.44 E-value=8.9e-05 Score=71.23 Aligned_cols=36 Identities=31% Similarity=0.496 Sum_probs=30.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC-------CeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP-------CEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~-------~~iis~Ds 70 (298)
.++.+++++||||+||||.+..||..+. ..+|+.|+
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt 243 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT 243 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence 5689999999999999999888887653 56788886
No 478
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.43 E-value=0.00011 Score=64.78 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=27.9
Q ss_pred EEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 40 VAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
|+|+||+||||||++..|+..++...|+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gd 32 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGD 32 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhH
Confidence 7899999999999999999999988887654
No 479
>COG0645 Predicted kinase [General function prediction only]
Probab=97.43 E-value=0.0011 Score=56.43 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=30.5
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.++.+.|-+||||||+++.|+..+++..|+.|.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~ 34 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDV 34 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHH
Confidence 468899999999999999999999999998886
No 480
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.43 E-value=9.6e-05 Score=81.95 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=35.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
++|++++|+||||||||||++.|++.... ...+++|+| |+|.++.
T Consensus 85 ~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~-~~~~~~G~I~~~G~~~~ 130 (1394)
T TIGR00956 85 KPGELTVVLGRPGSGCSTLLKTIASNTDG-FHIGVEGVITYDGITPE 130 (1394)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCCCC-CCCCceeEEEECCEehH
Confidence 45778999999999999999999987632 122578888 7887653
No 481
>PLN02199 shikimate kinase
Probab=97.42 E-value=0.00017 Score=66.99 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=31.5
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
++..|+|+|.+||||||+++.||+.++.++|..|.
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 35679999999999999999999999999988775
No 482
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.41 E-value=0.00016 Score=59.53 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=26.8
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPC 63 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~ 63 (298)
.+++.+++|.|+.|||||||++.+++.++.
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 356789999999999999999999999873
No 483
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.41 E-value=8.2e-05 Score=59.19 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.7
Q ss_pred EEEECCCchhHHHHHHHHHhhC
Q psy8556 40 VAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l 61 (298)
|+|.|++||||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999886
No 484
>PRK04040 adenylate kinase; Provisional
Probab=97.41 E-value=0.00016 Score=62.91 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=28.4
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC--CCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI--PCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l--~~~iis~Ds 70 (298)
+.+|+|+|++||||||+++.|+..+ +..+++.++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~ 37 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGD 37 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecch
Confidence 5689999999999999999999998 555555544
No 485
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.39 E-value=0.00011 Score=69.99 Aligned_cols=40 Identities=28% Similarity=0.309 Sum_probs=31.3
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
..+.++++|+||+|||||||+..|++.++ ..-+.+.|-+|
T Consensus 75 ~~~r~il~L~GPPGsGKStla~~La~~l~-~ys~t~eG~~Y 114 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGLE-EYSKTPEGRRY 114 (361)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHh-hhcccccCceE
Confidence 34568999999999999999999999885 33345556665
No 486
>PRK14528 adenylate kinase; Provisional
Probab=97.39 E-value=0.00016 Score=62.73 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=28.7
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.|+|+||+||||||+++.|++.++...++.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~ 34 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGD 34 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCH
Confidence 58899999999999999999999988887664
No 487
>PRK00625 shikimate kinase; Provisional
Probab=97.39 E-value=0.00014 Score=62.56 Aligned_cols=32 Identities=16% Similarity=0.394 Sum_probs=29.2
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.|+|+|+.||||||+++.||+.++...++.|.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 48999999999999999999999988888775
No 488
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00017 Score=62.35 Aligned_cols=52 Identities=13% Similarity=0.058 Sum_probs=35.9
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
.-|.|++.+- +...|. ...+|.+|.|+|.|||||||+++++.-+-. ++.|+|
T Consensus 12 lHK~~G~~eV-LKGvSL-----~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-----P~~G~I 63 (256)
T COG4598 12 LHKRYGEHEV-LKGVSL-----QANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSAGSI 63 (256)
T ss_pred HHhhcccchh-hcceee-----ecCCCCEEEEecCCCCchhHHHHHHHhhcC-----CCCceE
Confidence 3466666553 344444 224578999999999999999999954433 556666
No 489
>PRK02496 adk adenylate kinase; Provisional
Probab=97.37 E-value=0.00015 Score=62.31 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=27.8
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.++|+||+||||||+++.|++.++...++.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~ 34 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTGD 34 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEhHH
Confidence 48899999999999999999999877776653
No 490
>PRK08356 hypothetical protein; Provisional
Probab=97.37 E-value=0.00024 Score=61.86 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=26.9
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
..+|+|+||+||||||+++.|.. ++..+|+...
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~ 37 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSD 37 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCC
Confidence 35799999999999999999964 6766666553
No 491
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.37 E-value=0.0012 Score=66.67 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=31.3
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+-+.|+|+|..||||||+++.||+.++.+++..|.
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 34568999999999999999999999999988885
No 492
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.36 E-value=0.0002 Score=63.24 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=30.6
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+.+|+|+|+.||||||+++.|+..++..++++|.
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~ 39 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKLNLNVVCADT 39 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccH
Confidence 4689999999999999999999888888888875
No 493
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.34 E-value=0.00012 Score=64.63 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.8
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
+++++|+||||||||||++.|+..
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~~ 51 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITYA 51 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHheee
Confidence 679999999999999999999743
No 494
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.00022 Score=69.43 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.++.+++++||||+||||++..||..
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999875
No 495
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.34 E-value=0.00028 Score=68.56 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=48.9
Q ss_pred ChHHHHhhhcccCchhhhhhccccc------cccc-----cccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCc
Q psy8556 3 DVKDVLDRDTETDPQQRQLTADFRR------IRTG-----KLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSA 71 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~ 71 (298)
.|++++..-.++.-+|..-...++- .+.. .....|.-|.++||+|||||++++.||+.++.+++..|..
T Consensus 2 tP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat 81 (441)
T TIGR00390 2 TPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 81 (441)
T ss_pred CHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecc
Confidence 4777777777777666543333221 1111 1112345689999999999999999999999999888865
Q ss_pred eE
Q psy8556 72 LV 73 (298)
Q Consensus 72 qv 73 (298)
.+
T Consensus 82 ~~ 83 (441)
T TIGR00390 82 KF 83 (441)
T ss_pred ee
Confidence 44
No 496
>KOG0064|consensus
Probab=97.34 E-value=0.00012 Score=72.31 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=31.9
Q ss_pred chhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 16 PQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
|-+.-++..|.+ +.+|++ +.|+||||||||+|.+.|+++.+
T Consensus 492 P~~~vvv~~Ltf~i~~G~h------LLItGPNGCGKSSLfRILggLWP 533 (728)
T KOG0064|consen 492 PAGDVLVPKLTFQIEPGMH------LLITGPNGCGKSSLFRILGGLWP 533 (728)
T ss_pred cCcceeecceeEEecCCce------EEEECCCCccHHHHHHHHhccCc
Confidence 444445555666 655654 89999999999999999999877
No 497
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.34 E-value=0.00019 Score=61.74 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=24.1
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+.+++|+|++|||||||+..|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 456999999999999999999998775
No 498
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.32 E-value=0.00023 Score=62.96 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=28.7
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.|+|+||+||||||+++.||..++...++.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~d 33 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGD 33 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCc
Confidence 48899999999999999999999988887654
No 499
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.31 E-value=0.00017 Score=63.10 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISE 59 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~ 59 (298)
.++++++|+||||||||||++.++.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 3468999999999999999999984
No 500
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.30 E-value=0.00017 Score=64.50 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=31.6
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecc
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCD 76 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g 76 (298)
+.+|+|.||+||||||+++.|++.++...+ |++.+|+.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~--~~~~~~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYL--DTGAMYRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCchhHHH
Confidence 578999999999999999999999986664 55557654
Done!