Query psy8556
Match_columns 298
No_of_seqs 311 out of 3337
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 21:53:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3foz_A TRNA delta(2)-isopenten 100.0 4.6E-70 1.6E-74 504.2 26.2 253 36-289 9-305 (316)
2 3exa_A TRNA delta(2)-isopenten 100.0 1.6E-69 5.5E-74 501.3 28.6 255 36-294 2-301 (322)
3 3crm_A TRNA delta(2)-isopenten 100.0 5.1E-63 1.7E-67 461.2 25.0 258 37-295 5-317 (323)
4 3eph_A TRNA isopentenyltransfe 100.0 7.1E-63 2.4E-67 470.8 16.2 247 37-285 2-309 (409)
5 3d3q_A TRNA delta(2)-isopenten 100.0 9.8E-61 3.4E-65 448.3 24.3 254 38-295 8-312 (340)
6 3a8t_A Adenylate isopentenyltr 100.0 4.6E-54 1.6E-58 402.1 17.4 234 35-283 38-303 (339)
7 2ze6_A Isopentenyl transferase 100.0 1.4E-28 4.9E-33 221.8 16.9 205 38-273 2-225 (253)
8 2qmh_A HPR kinase/phosphorylas 99.1 7.1E-12 2.4E-16 108.7 1.4 79 28-113 25-110 (205)
9 1z47_A CYSA, putative ABC-tran 99.0 6.2E-10 2.1E-14 104.7 7.6 143 10-166 19-190 (355)
10 3tau_A Guanylate kinase, GMP k 99.0 1.3E-11 4.4E-16 107.1 -3.8 120 33-160 4-138 (208)
11 3d31_A Sulfate/molybdate ABC t 98.9 1.7E-09 5.9E-14 101.4 7.8 140 10-165 6-171 (348)
12 3gfo_A Cobalt import ATP-bindi 98.9 1.2E-09 3.9E-14 99.4 6.1 61 10-80 12-73 (275)
13 3rlf_A Maltose/maltodextrin im 98.9 1.3E-09 4.4E-14 103.4 6.5 141 10-165 8-177 (381)
14 2it1_A 362AA long hypothetical 98.9 1.7E-09 5.9E-14 101.9 6.6 142 10-166 8-178 (362)
15 3fvq_A Fe(3+) IONS import ATP- 98.9 1.8E-09 6.3E-14 101.6 6.5 59 10-79 9-68 (359)
16 2pcj_A ABC transporter, lipopr 98.9 1.8E-09 6.3E-14 95.0 6.0 60 11-81 10-70 (224)
17 4g1u_C Hemin import ATP-bindin 98.9 5.9E-09 2E-13 94.2 9.4 61 11-82 17-78 (266)
18 1g29_1 MALK, maltose transport 98.8 2.3E-09 8E-14 101.4 5.7 142 10-166 8-184 (372)
19 3tui_C Methionine import ATP-b 98.8 3.3E-09 1.1E-13 100.0 6.8 142 10-165 29-207 (366)
20 2yyz_A Sugar ABC transporter, 98.8 6.8E-09 2.3E-13 97.8 8.2 142 10-166 8-178 (359)
21 2olj_A Amino acid ABC transpor 98.8 1.4E-08 4.6E-13 91.7 9.6 59 11-80 30-89 (263)
22 3tr0_A Guanylate kinase, GMP k 98.8 1.1E-08 3.7E-13 87.3 7.9 28 35-62 5-32 (205)
23 2onk_A Molybdate/tungstate ABC 98.8 1.3E-08 4.4E-13 90.6 8.7 56 11-80 7-63 (240)
24 1oxx_K GLCV, glucose, ABC tran 98.8 2.3E-09 7.8E-14 100.8 3.9 60 10-80 8-70 (353)
25 1v43_A Sugar-binding transport 98.8 1E-08 3.5E-13 97.0 8.3 146 10-166 16-186 (372)
26 1vpl_A ABC transporter, ATP-bi 98.8 2.3E-08 7.9E-13 89.8 9.8 59 11-80 21-80 (256)
27 3ney_A 55 kDa erythrocyte memb 98.8 1.2E-09 4E-14 94.7 0.7 92 34-133 16-117 (197)
28 3tif_A Uncharacterized ABC tra 98.7 5.3E-09 1.8E-13 92.7 4.1 62 11-82 7-72 (235)
29 2d2e_A SUFC protein; ABC-ATPas 98.7 1.6E-08 5.4E-13 90.4 7.0 62 11-81 9-71 (250)
30 1ex7_A Guanylate kinase; subst 98.7 7.2E-09 2.5E-13 88.9 4.2 87 39-133 3-99 (186)
31 1mv5_A LMRA, multidrug resista 98.7 6.7E-09 2.3E-13 92.4 3.4 61 11-81 7-68 (243)
32 1sgw_A Putative ABC transporte 98.7 6.9E-09 2.4E-13 90.9 2.9 57 11-79 16-73 (214)
33 1ji0_A ABC transporter; ATP bi 98.7 9E-09 3.1E-13 91.5 3.6 61 10-81 11-72 (240)
34 3nh6_A ATP-binding cassette SU 98.7 9.7E-09 3.3E-13 94.7 3.5 61 11-81 59-120 (306)
35 1g6h_A High-affinity branched- 98.6 1E-08 3.4E-13 92.1 3.2 60 10-80 12-72 (257)
36 3lnc_A Guanylate kinase, GMP k 98.6 1.3E-09 4.5E-14 95.5 -3.1 28 35-62 25-53 (231)
37 1kgd_A CASK, peripheral plasma 98.6 5.7E-09 2E-13 88.2 0.9 55 35-97 3-57 (180)
38 2ff7_A Alpha-hemolysin translo 98.6 1E-08 3.5E-13 91.6 2.4 63 9-81 11-75 (247)
39 2pjz_A Hypothetical protein ST 98.6 5.2E-08 1.8E-12 87.9 5.6 137 11-166 7-173 (263)
40 3b5x_A Lipid A export ATP-bind 98.6 1.6E-07 5.5E-12 93.5 9.6 42 35-81 367-409 (582)
41 2ixe_A Antigen peptide transpo 98.6 1.7E-08 5.8E-13 91.4 2.2 60 11-80 22-84 (271)
42 2ihy_A ABC transporter, ATP-bi 98.5 2E-08 6.7E-13 91.4 2.4 59 11-80 27-86 (279)
43 2yz2_A Putative ABC transporte 98.5 1.7E-08 5.9E-13 91.0 1.9 60 11-80 8-72 (266)
44 2pze_A Cystic fibrosis transme 98.5 2.4E-08 8.4E-13 88.0 2.6 55 10-74 11-66 (229)
45 3b60_A Lipid A export ATP-bind 98.5 1.5E-07 5E-12 93.8 8.3 42 35-81 367-409 (582)
46 1b0u_A Histidine permease; ABC 98.5 4.6E-08 1.6E-12 88.1 3.8 59 11-80 12-71 (262)
47 2cbz_A Multidrug resistance-as 98.5 2.3E-08 7.9E-13 88.7 1.4 57 10-76 8-66 (237)
48 2zu0_C Probable ATP-dependent 98.5 3.7E-08 1.3E-12 88.9 2.1 61 11-80 26-87 (267)
49 2yl4_A ATP-binding cassette SU 98.4 1.7E-07 5.8E-12 93.6 6.3 42 35-81 368-410 (595)
50 2nq2_C Hypothetical ABC transp 98.4 4.6E-08 1.6E-12 87.6 1.9 54 11-74 10-63 (253)
51 2qi9_C Vitamin B12 import ATP- 98.4 1.4E-07 4.7E-12 84.4 4.5 40 35-80 24-64 (249)
52 2ghi_A Transport protein; mult 98.4 8.7E-08 3E-12 86.2 2.1 60 10-80 22-84 (260)
53 3trf_A Shikimate kinase, SK; a 98.4 2.2E-07 7.4E-12 78.0 4.4 35 36-70 4-38 (185)
54 1s96_A Guanylate kinase, GMP k 98.3 2.6E-07 9E-12 80.9 4.3 33 30-62 9-41 (219)
55 3gd7_A Fusion complex of cysti 98.3 1E-07 3.6E-12 90.6 1.6 62 10-82 24-87 (390)
56 1z6g_A Guanylate kinase; struc 98.3 2.2E-07 7.6E-12 80.9 3.4 28 35-62 21-48 (218)
57 3asz_A Uridine kinase; cytidin 98.3 2.1E-07 7.1E-12 79.8 3.0 37 34-70 3-41 (211)
58 3qf4_B Uncharacterized ABC tra 98.3 1.8E-07 6E-12 93.6 2.5 60 12-81 361-421 (598)
59 4e22_A Cytidylate kinase; P-lo 98.3 8.3E-07 2.8E-11 79.0 6.6 40 33-74 23-62 (252)
60 1htw_A HI0065; nucleotide-bind 98.2 6.9E-07 2.4E-11 74.4 4.6 39 35-79 31-70 (158)
61 1znw_A Guanylate kinase, GMP k 98.2 4.7E-07 1.6E-11 77.9 3.6 29 34-62 17-45 (207)
62 4f4c_A Multidrug resistance pr 98.2 4.9E-07 1.7E-11 98.0 4.5 59 14-82 1085-1146(1321)
63 4eun_A Thermoresistant glucoki 98.2 6.5E-07 2.2E-11 76.5 4.1 35 35-69 27-61 (200)
64 2bbs_A Cystic fibrosis transme 98.2 3.9E-07 1.3E-11 83.3 2.8 35 35-74 62-96 (290)
65 3c8u_A Fructokinase; YP_612366 98.2 3.9E-07 1.3E-11 78.4 2.7 29 34-62 19-47 (208)
66 1knq_A Gluconate kinase; ALFA/ 98.2 8.6E-07 2.9E-11 73.7 4.5 36 35-70 6-41 (175)
67 3a00_A Guanylate kinase, GMP k 98.2 5.9E-07 2E-11 75.9 3.2 26 37-62 1-26 (186)
68 1kag_A SKI, shikimate kinase I 98.2 7E-07 2.4E-11 73.9 3.5 33 37-69 4-36 (173)
69 4a82_A Cystic fibrosis transme 98.2 3.4E-07 1.1E-11 91.2 1.6 42 35-81 365-407 (578)
70 3vaa_A Shikimate kinase, SK; s 98.2 7.2E-07 2.5E-11 76.2 3.3 36 35-70 23-58 (199)
71 3j16_B RLI1P; ribosome recycli 98.2 6E-07 2.1E-11 90.0 3.1 52 11-73 83-134 (608)
72 1zp6_A Hypothetical protein AT 98.2 1E-06 3.5E-11 74.0 4.1 28 35-62 7-34 (191)
73 3qf4_A ABC transporter, ATP-bi 98.2 5.6E-07 1.9E-11 89.8 2.4 42 35-81 367-409 (587)
74 3t61_A Gluconokinase; PSI-biol 98.1 1.1E-06 3.6E-11 75.0 3.7 38 33-70 14-51 (202)
75 2eyu_A Twitching motility prot 98.1 1E-06 3.5E-11 79.2 3.2 40 35-79 23-64 (261)
76 3b85_A Phosphate starvation-in 98.1 4.7E-07 1.6E-11 78.7 0.6 33 35-73 20-52 (208)
77 2jeo_A Uridine-cytidine kinase 98.1 1.6E-06 5.4E-11 76.6 4.0 28 35-62 23-50 (245)
78 1cke_A CK, MSSA, protein (cyti 98.1 1.5E-06 5E-11 75.1 3.6 37 37-75 5-41 (227)
79 2v9p_A Replication protein E1; 98.1 1.2E-06 4.3E-11 80.5 3.1 33 34-66 123-155 (305)
80 3b9q_A Chloroplast SRP recepto 98.1 1.6E-06 5.4E-11 79.6 3.6 41 34-79 97-138 (302)
81 2p5t_B PEZT; postsegregational 98.1 2E-05 6.8E-10 69.9 10.6 30 34-63 29-58 (253)
82 1rj9_A FTSY, signal recognitio 98.1 1.8E-06 6.2E-11 79.3 3.8 40 36-80 101-141 (304)
83 2qt1_A Nicotinamide riboside k 98.1 2E-06 6.9E-11 73.5 3.8 36 35-70 19-55 (207)
84 4f4c_A Multidrug resistance pr 98.1 3.4E-06 1.2E-10 91.4 6.3 44 35-83 442-486 (1321)
85 3uie_A Adenylyl-sulfate kinase 98.1 1.3E-06 4.5E-11 74.6 2.4 34 29-62 17-50 (200)
86 1uf9_A TT1252 protein; P-loop, 98.0 2.1E-06 7.3E-11 72.6 3.5 38 32-70 3-40 (203)
87 3ozx_A RNAse L inhibitor; ATP 98.0 2E-06 6.7E-11 85.1 3.7 35 34-73 22-56 (538)
88 3zvl_A Bifunctional polynucleo 98.0 3.6E-06 1.2E-10 80.4 5.0 38 33-70 254-291 (416)
89 1sq5_A Pantothenate kinase; P- 98.0 2.5E-06 8.4E-11 78.3 3.6 29 34-62 77-105 (308)
90 1lvg_A Guanylate kinase, GMP k 98.0 2E-06 6.8E-11 73.7 2.6 27 36-62 3-29 (198)
91 1y63_A LMAJ004144AAA protein; 98.0 3.4E-06 1.2E-10 71.1 3.9 37 34-70 7-44 (184)
92 3nwj_A ATSK2; P loop, shikimat 98.0 1.9E-06 6.7E-11 77.0 2.4 56 12-70 25-81 (250)
93 3kb2_A SPBC2 prophage-derived 98.0 3.6E-06 1.2E-10 69.1 3.8 33 38-70 2-34 (173)
94 3cm0_A Adenylate kinase; ATP-b 98.0 2.7E-06 9.3E-11 71.1 3.0 35 35-69 2-36 (186)
95 2iw3_A Elongation factor 3A; a 98.0 2.3E-06 7.9E-11 89.7 3.1 54 12-75 678-732 (986)
96 1a7j_A Phosphoribulokinase; tr 98.0 1.3E-06 4.4E-11 79.7 1.0 40 34-75 2-46 (290)
97 2bbw_A Adenylate kinase 4, AK4 98.0 2.7E-06 9.2E-11 75.0 3.0 38 34-73 24-61 (246)
98 1uj2_A Uridine-cytidine kinase 98.0 4.5E-06 1.5E-10 73.9 4.4 40 34-75 19-68 (252)
99 2og2_A Putative signal recogni 98.0 3.3E-06 1.1E-10 79.4 3.7 41 34-79 154-195 (359)
100 3euj_A Chromosome partition pr 98.0 4.3E-06 1.5E-10 81.5 4.5 39 38-81 30-69 (483)
101 3e70_C DPA, signal recognition 98.0 3.2E-06 1.1E-10 78.5 3.4 41 35-80 127-168 (328)
102 2qor_A Guanylate kinase; phosp 98.0 3.8E-06 1.3E-10 71.9 3.5 29 34-62 9-37 (204)
103 2j41_A Guanylate kinase; GMP, 98.0 3.9E-06 1.3E-10 71.2 3.5 27 35-61 4-30 (207)
104 1yqt_A RNAse L inhibitor; ATP- 98.0 2.5E-06 8.6E-11 84.3 2.6 54 9-73 25-78 (538)
105 1tev_A UMP-CMP kinase; ploop, 98.0 3.9E-06 1.3E-10 70.2 3.4 35 36-70 2-36 (196)
106 2bdt_A BH3686; alpha-beta prot 97.9 4.1E-06 1.4E-10 70.4 3.5 27 37-63 2-28 (189)
107 2rhm_A Putative kinase; P-loop 97.9 3.6E-06 1.2E-10 70.6 3.1 36 35-70 3-38 (193)
108 1ukz_A Uridylate kinase; trans 97.9 6.3E-06 2.2E-10 70.0 4.6 38 33-70 11-48 (203)
109 3tqc_A Pantothenate kinase; bi 97.9 3.6E-06 1.2E-10 77.9 3.2 37 34-70 89-132 (321)
110 4gp7_A Metallophosphoesterase; 97.9 4.2E-06 1.4E-10 69.9 3.2 24 35-58 7-30 (171)
111 1qhx_A CPT, protein (chloramph 97.9 6.8E-06 2.3E-10 68.2 4.4 30 37-66 3-32 (178)
112 2c95_A Adenylate kinase 1; tra 97.9 4.3E-06 1.5E-10 70.3 3.2 36 35-70 7-42 (196)
113 1jjv_A Dephospho-COA kinase; P 97.9 5E-06 1.7E-10 70.9 3.5 32 38-70 3-34 (206)
114 2if2_A Dephospho-COA kinase; a 97.9 4.8E-06 1.7E-10 70.8 3.3 31 39-70 3-33 (204)
115 3aez_A Pantothenate kinase; tr 97.9 4.6E-06 1.6E-10 76.8 3.3 29 34-62 87-115 (312)
116 3ozx_A RNAse L inhibitor; ATP 97.9 4.8E-06 1.6E-10 82.3 3.6 35 35-74 292-326 (538)
117 1qf9_A UMP/CMP kinase, protein 97.9 6E-06 2.1E-10 68.9 3.5 35 36-70 5-39 (194)
118 3g5u_A MCG1178, multidrug resi 97.9 6.4E-06 2.2E-10 89.1 4.5 42 35-81 1057-1099(1284)
119 3r20_A Cytidylate kinase; stru 97.9 5.3E-06 1.8E-10 73.4 3.3 43 33-77 5-47 (233)
120 1ly1_A Polynucleotide kinase; 97.9 5.9E-06 2E-10 68.3 3.2 33 37-69 2-35 (181)
121 3j16_B RLI1P; ribosome recycli 97.9 5.1E-06 1.8E-10 83.2 3.2 53 14-72 355-408 (608)
122 3g5u_A MCG1178, multidrug resi 97.9 4.4E-06 1.5E-10 90.4 2.8 62 11-82 393-457 (1284)
123 3bk7_A ABC transporter ATP-bin 97.9 4.5E-06 1.5E-10 83.6 2.6 53 10-73 96-148 (607)
124 3sop_A Neuronal-specific septi 97.9 5E-06 1.7E-10 75.0 2.6 36 39-79 4-40 (270)
125 2pt7_A CAG-ALFA; ATPase, prote 97.9 4.7E-06 1.6E-10 77.3 2.5 38 35-77 169-207 (330)
126 1aky_A Adenylate kinase; ATP:A 97.9 7.1E-06 2.4E-10 70.9 3.4 36 35-70 2-37 (220)
127 2iyv_A Shikimate kinase, SK; t 97.9 5.3E-06 1.8E-10 69.4 2.5 33 38-70 3-35 (184)
128 2gza_A Type IV secretion syste 97.8 6.2E-06 2.1E-10 77.4 3.2 35 35-74 173-207 (361)
129 1yqt_A RNAse L inhibitor; ATP- 97.8 6.6E-06 2.3E-10 81.2 3.4 35 35-74 310-344 (538)
130 3bk7_A ABC transporter ATP-bin 97.8 6.7E-06 2.3E-10 82.4 3.4 35 35-74 380-414 (607)
131 3lw7_A Adenylate kinase relate 97.8 8.7E-06 3E-10 66.5 3.5 31 38-69 2-32 (179)
132 1vht_A Dephospho-COA kinase; s 97.8 1E-05 3.4E-10 69.7 4.1 34 36-70 3-36 (218)
133 3iij_A Coilin-interacting nucl 97.8 7.3E-06 2.5E-10 68.3 3.1 35 36-70 10-44 (180)
134 2cdn_A Adenylate kinase; phosp 97.8 9E-06 3.1E-10 69.1 3.6 37 34-70 17-53 (201)
135 2dpy_A FLII, flagellum-specifi 97.8 1.1E-05 3.7E-10 77.8 4.4 56 11-77 137-193 (438)
136 2yhs_A FTSY, cell division pro 97.8 8.7E-06 3E-10 79.5 3.7 41 34-79 290-331 (503)
137 1gvn_B Zeta; postsegregational 97.8 1E-05 3.5E-10 73.5 3.9 36 34-69 30-67 (287)
138 4a74_A DNA repair and recombin 97.8 8.5E-06 2.9E-10 70.0 3.1 27 35-61 23-49 (231)
139 2pez_A Bifunctional 3'-phospho 97.8 1.2E-05 3.9E-10 67.2 3.8 35 35-69 3-40 (179)
140 2bwj_A Adenylate kinase 5; pho 97.8 8.4E-06 2.9E-10 68.6 2.9 35 36-70 11-45 (199)
141 1via_A Shikimate kinase; struc 97.8 7.9E-06 2.7E-10 67.9 2.7 32 39-70 6-37 (175)
142 1kht_A Adenylate kinase; phosp 97.8 7.6E-06 2.6E-10 68.3 2.5 33 37-69 3-40 (192)
143 1p9r_A General secretion pathw 97.8 1.3E-05 4.3E-10 76.9 4.4 40 35-79 165-205 (418)
144 2grj_A Dephospho-COA kinase; T 97.8 9.4E-06 3.2E-10 69.5 3.1 34 37-70 12-45 (192)
145 1rz3_A Hypothetical protein rb 97.8 8.8E-06 3E-10 69.5 2.9 28 34-61 19-46 (201)
146 2vli_A Antibiotic resistance p 97.8 1.1E-05 3.7E-10 67.1 3.4 32 35-66 3-34 (183)
147 1zd8_A GTP:AMP phosphotransfer 97.8 1.1E-05 3.8E-10 70.0 3.5 35 36-70 6-40 (227)
148 2ehv_A Hypothetical protein PH 97.8 1E-05 3.5E-10 70.4 3.1 24 35-58 28-51 (251)
149 1u0l_A Probable GTPase ENGC; p 97.8 1.3E-05 4.5E-10 73.1 3.9 42 35-81 167-212 (301)
150 1e6c_A Shikimate kinase; phosp 97.8 1.1E-05 3.6E-10 66.6 2.9 33 38-70 3-35 (173)
151 2obl_A ESCN; ATPase, hydrolase 97.8 1.3E-05 4.5E-10 74.9 3.8 52 11-73 51-102 (347)
152 1ye8_A Protein THEP1, hypothet 97.8 1.1E-05 3.7E-10 68.2 2.9 24 39-62 2-25 (178)
153 3tlx_A Adenylate kinase 2; str 97.8 1.4E-05 4.9E-10 70.5 3.8 36 35-70 27-62 (243)
154 2npi_A Protein CLP1; CLP1-PCF1 97.7 7E-06 2.4E-10 79.6 1.6 28 35-62 136-163 (460)
155 1zuh_A Shikimate kinase; alpha 97.7 1.4E-05 4.6E-10 65.9 3.1 34 37-70 7-40 (168)
156 2vp4_A Deoxynucleoside kinase; 97.7 1.6E-05 5.4E-10 69.5 3.6 27 34-60 17-43 (230)
157 2f1r_A Molybdopterin-guanine d 97.7 9.5E-06 3.2E-10 68.3 2.0 25 38-62 3-27 (171)
158 3ec2_A DNA replication protein 97.7 9.3E-06 3.2E-10 67.8 1.9 27 35-61 36-62 (180)
159 3ake_A Cytidylate kinase; CMP 97.7 1.6E-05 5.5E-10 67.4 3.4 32 39-70 4-35 (208)
160 2yv5_A YJEQ protein; hydrolase 97.7 2E-05 6.7E-10 72.1 4.1 41 35-81 163-207 (302)
161 3umf_A Adenylate kinase; rossm 97.7 2E-05 6.7E-10 69.0 3.9 35 34-68 26-60 (217)
162 1q3t_A Cytidylate kinase; nucl 97.7 1.8E-05 6E-10 69.3 3.5 41 33-75 12-52 (236)
163 1zak_A Adenylate kinase; ATP:A 97.7 1.3E-05 4.4E-10 69.3 2.4 35 36-70 4-38 (222)
164 2ewv_A Twitching motility prot 97.7 1.4E-05 4.8E-10 75.3 2.8 28 35-62 134-161 (372)
165 3dl0_A Adenylate kinase; phosp 97.7 2E-05 6.9E-10 67.6 3.5 32 39-70 2-33 (216)
166 2i3b_A HCR-ntpase, human cance 97.7 1.5E-05 5E-10 68.2 2.6 25 37-61 1-25 (189)
167 1lw7_A Transcriptional regulat 97.7 1.4E-05 4.7E-10 74.8 2.5 26 37-62 170-195 (365)
168 1qhl_A Protein (cell division 97.7 3.4E-06 1.2E-10 74.4 -1.6 37 38-79 28-65 (227)
169 3fb4_A Adenylate kinase; psych 97.7 1.8E-05 6.1E-10 67.8 3.0 32 39-70 2-33 (216)
170 3be4_A Adenylate kinase; malar 97.7 1.7E-05 5.7E-10 68.5 2.7 35 36-70 4-38 (217)
171 2pt5_A Shikimate kinase, SK; a 97.7 2E-05 6.9E-10 64.6 3.0 32 39-70 2-33 (168)
172 2f6r_A COA synthase, bifunctio 97.7 2.1E-05 7.1E-10 71.1 3.3 37 33-70 71-107 (281)
173 2v54_A DTMP kinase, thymidylat 97.6 3.1E-05 1.1E-09 65.4 3.7 31 36-66 3-34 (204)
174 1t9h_A YLOQ, probable GTPase E 97.6 1.7E-05 5.8E-10 73.0 2.1 42 35-81 171-216 (307)
175 1odf_A YGR205W, hypothetical 3 97.6 2.7E-05 9.1E-10 71.0 3.4 37 34-70 28-72 (290)
176 1nij_A Hypothetical protein YJ 97.6 1.9E-05 6.6E-10 72.6 2.4 45 36-80 3-51 (318)
177 1tq4_A IIGP1, interferon-induc 97.6 2.8E-05 9.5E-10 74.4 3.5 34 36-74 68-101 (413)
178 2qm8_A GTPase/ATPase; G protei 97.6 2.3E-05 7.8E-10 72.8 2.7 40 35-79 53-93 (337)
179 3szr_A Interferon-induced GTP- 97.6 1.6E-05 5.6E-10 79.6 1.5 66 8-79 13-84 (608)
180 2wwf_A Thymidilate kinase, put 97.6 1.6E-05 5.4E-10 67.7 1.2 32 35-66 8-39 (212)
181 2pbr_A DTMP kinase, thymidylat 97.6 3.6E-05 1.2E-09 64.3 3.3 31 39-69 2-35 (195)
182 3kta_A Chromosome segregation 97.6 4.6E-05 1.6E-09 63.4 3.8 25 38-62 27-51 (182)
183 1ak2_A Adenylate kinase isoenz 97.5 4E-05 1.4E-09 66.9 3.5 36 35-70 14-49 (233)
184 2yvu_A Probable adenylyl-sulfa 97.5 4.5E-05 1.5E-09 63.9 3.7 29 34-62 10-38 (186)
185 2oap_1 GSPE-2, type II secreti 97.5 3.2E-05 1.1E-09 75.9 3.2 34 35-73 258-291 (511)
186 1nn5_A Similar to deoxythymidy 97.5 1.7E-05 5.7E-10 67.6 1.0 28 35-62 7-34 (215)
187 2h92_A Cytidylate kinase; ross 97.5 4.2E-05 1.4E-09 65.6 3.4 34 37-70 3-36 (219)
188 2jaq_A Deoxyguanosine kinase; 97.5 5.2E-05 1.8E-09 63.8 3.7 27 39-65 2-28 (205)
189 2x8a_A Nuclear valosin-contain 97.5 4.9E-05 1.7E-09 68.5 3.6 28 40-67 47-74 (274)
190 1m7g_A Adenylylsulfate kinase; 97.5 2.4E-05 8.4E-10 67.1 1.4 30 33-62 21-50 (211)
191 3jvv_A Twitching mobility prot 97.5 4.5E-05 1.5E-09 71.5 3.2 28 35-62 121-148 (356)
192 2plr_A DTMP kinase, probable t 97.5 5.4E-05 1.8E-09 64.1 3.4 28 36-63 3-30 (213)
193 1nks_A Adenylate kinase; therm 97.5 3.2E-05 1.1E-09 64.4 1.8 25 38-62 2-26 (194)
194 1svm_A Large T antigen; AAA+ f 97.5 6.7E-05 2.3E-09 70.9 4.0 33 35-67 167-199 (377)
195 2w0m_A SSO2452; RECA, SSPF, un 97.5 5.9E-05 2E-09 64.5 3.3 27 35-61 21-47 (235)
196 2kjq_A DNAA-related protein; s 97.4 3.9E-05 1.3E-09 62.8 1.9 27 36-62 35-61 (149)
197 1in4_A RUVB, holliday junction 97.4 3.7E-05 1.3E-09 71.0 1.9 53 12-65 25-79 (334)
198 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 8.7E-05 3E-09 66.0 4.1 31 36-66 3-36 (260)
199 2xb4_A Adenylate kinase; ATP-b 97.4 6.4E-05 2.2E-09 65.2 3.1 32 39-70 2-33 (223)
200 1ltq_A Polynucleotide kinase; 97.4 7.3E-05 2.5E-09 67.3 3.5 33 37-69 2-35 (301)
201 1e4v_A Adenylate kinase; trans 97.4 5.6E-05 1.9E-09 64.9 2.6 32 39-70 2-33 (214)
202 1tf7_A KAIC; homohexamer, hexa 97.4 5.2E-05 1.8E-09 74.4 2.6 53 13-74 19-73 (525)
203 2qag_B Septin-6, protein NEDD5 97.4 5.3E-05 1.8E-09 72.7 2.5 43 12-61 22-66 (427)
204 2z0h_A DTMP kinase, thymidylat 97.4 8.5E-05 2.9E-09 62.2 3.3 28 39-66 2-32 (197)
205 1ixz_A ATP-dependent metallopr 97.4 0.00011 3.8E-09 64.6 4.0 29 40-68 52-80 (254)
206 3sr0_A Adenylate kinase; phosp 97.4 9.7E-05 3.3E-09 63.9 3.6 30 39-68 2-31 (206)
207 3cr8_A Sulfate adenylyltranfer 97.4 7.1E-05 2.4E-09 74.1 3.0 28 35-62 367-394 (552)
208 1cr0_A DNA primase/helicase; R 97.3 9.1E-05 3.1E-09 66.8 3.3 28 35-62 33-60 (296)
209 1vma_A Cell division protein F 97.3 9.6E-05 3.3E-09 67.8 3.3 29 34-62 101-129 (306)
210 1pui_A ENGB, probable GTP-bind 97.3 4.5E-05 1.6E-09 64.5 0.8 28 34-61 23-50 (210)
211 2cvh_A DNA repair and recombin 97.3 0.00012 4.2E-09 62.2 3.5 25 35-59 18-42 (220)
212 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.00015 5.2E-09 59.2 3.6 25 37-61 23-47 (149)
213 1n0w_A DNA repair protein RAD5 97.3 0.00012 4.2E-09 63.3 3.2 26 35-60 22-47 (243)
214 1iy2_A ATP-dependent metallopr 97.3 0.00017 5.8E-09 64.5 4.1 28 40-67 76-103 (278)
215 1lv7_A FTSH; alpha/beta domain 97.2 0.00019 6.3E-09 63.2 4.0 33 38-70 46-78 (257)
216 4eaq_A DTMP kinase, thymidylat 97.2 0.00017 5.7E-09 63.2 3.6 28 35-62 24-51 (229)
217 2px0_A Flagellar biosynthesis 97.2 0.00018 6.1E-09 65.6 3.9 27 35-61 103-129 (296)
218 2iw3_A Elongation factor 3A; a 97.2 0.00011 3.7E-09 77.1 2.6 25 35-59 459-483 (986)
219 3bos_A Putative DNA replicatio 97.2 0.0011 3.9E-08 56.5 8.5 27 36-62 51-77 (242)
220 1gtv_A TMK, thymidylate kinase 97.2 8.6E-05 2.9E-09 63.1 1.3 24 39-62 2-25 (214)
221 3cf0_A Transitional endoplasmi 97.2 0.00029 1E-08 63.9 4.7 36 35-70 47-82 (301)
222 2rcn_A Probable GTPase ENGC; Y 97.2 0.00017 6E-09 67.6 3.2 34 36-73 214-247 (358)
223 3hdt_A Putative kinase; struct 97.1 0.00023 7.8E-09 62.3 3.1 38 32-69 9-46 (223)
224 1nlf_A Regulatory protein REPA 97.1 0.0002 7E-09 64.0 2.8 27 35-61 28-54 (279)
225 3fdi_A Uncharacterized protein 97.1 0.00032 1.1E-08 60.1 3.9 35 37-74 6-40 (201)
226 4aby_A DNA repair protein RECN 97.1 0.00017 5.8E-09 68.0 2.3 27 35-62 59-85 (415)
227 1pzn_A RAD51, DNA repair and r 97.1 0.00029 1E-08 65.6 3.9 27 35-61 129-155 (349)
228 1zu4_A FTSY; GTPase, signal re 97.1 0.00027 9.1E-09 65.2 3.4 29 34-62 102-130 (320)
229 1xjc_A MOBB protein homolog; s 97.1 0.00026 9E-09 59.4 3.0 26 36-61 3-28 (169)
230 3ux8_A Excinuclease ABC, A sub 97.1 0.00023 7.9E-09 71.8 3.1 20 35-54 42-61 (670)
231 1c9k_A COBU, adenosylcobinamid 97.0 8.6E-05 2.9E-09 63.1 -0.3 26 39-65 1-26 (180)
232 1ofh_A ATP-dependent HSL prote 97.0 0.00026 8.8E-09 63.4 2.8 67 3-69 5-82 (310)
233 3b9p_A CG5977-PA, isoform A; A 97.0 0.00049 1.7E-08 61.7 4.5 34 36-69 53-86 (297)
234 3t15_A Ribulose bisphosphate c 97.0 0.00029 1E-08 63.8 3.0 39 35-73 34-72 (293)
235 3hws_A ATP-dependent CLP prote 97.0 0.00047 1.6E-08 64.0 4.4 35 36-70 50-84 (363)
236 3ld9_A DTMP kinase, thymidylat 97.0 0.00036 1.2E-08 61.1 3.3 40 23-62 7-46 (223)
237 1ls1_A Signal recognition part 97.0 0.00039 1.3E-08 63.3 3.5 27 36-62 97-123 (295)
238 1np6_A Molybdopterin-guanine d 97.0 0.00037 1.3E-08 58.6 3.1 25 37-61 6-30 (174)
239 1ewq_A DNA mismatch repair pro 96.9 0.00034 1.2E-08 71.8 3.2 25 37-61 576-600 (765)
240 2o8b_B DNA mismatch repair pro 96.9 0.00038 1.3E-08 73.6 3.4 49 12-61 762-812 (1022)
241 3h4m_A Proteasome-activating n 96.9 0.00059 2E-08 60.7 4.1 34 36-69 50-83 (285)
242 4i1u_A Dephospho-COA kinase; s 96.9 0.00046 1.6E-08 59.9 3.3 32 38-70 10-41 (210)
243 3qf7_A RAD50; ABC-ATPase, ATPa 96.9 0.00041 1.4E-08 65.0 3.2 24 38-61 24-47 (365)
244 2p65_A Hypothetical protein PF 96.9 0.00072 2.5E-08 55.3 4.2 25 37-61 43-67 (187)
245 1p5z_B DCK, deoxycytidine kina 96.9 0.00037 1.3E-08 61.8 2.5 30 33-62 20-49 (263)
246 3qks_A DNA double-strand break 96.9 0.00057 1.9E-08 58.6 3.6 26 37-62 23-48 (203)
247 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.00064 2.2E-08 59.4 3.9 33 37-69 39-71 (262)
248 2dr3_A UPF0273 protein PH0284; 96.9 0.00048 1.6E-08 59.5 3.0 26 35-60 21-46 (247)
249 2ocp_A DGK, deoxyguanosine kin 96.9 0.00085 2.9E-08 58.5 4.6 27 36-62 1-27 (241)
250 1jbk_A CLPB protein; beta barr 96.8 0.00084 2.9E-08 54.8 4.2 25 37-61 43-67 (195)
251 3m6a_A ATP-dependent protease 96.8 0.00064 2.2E-08 67.0 4.1 30 36-65 107-136 (543)
252 1oix_A RAS-related protein RAB 96.8 0.00049 1.7E-08 57.7 2.8 24 38-61 30-53 (191)
253 3ux8_A Excinuclease ABC, A sub 96.8 0.00027 9.4E-09 71.3 1.4 24 35-58 346-369 (670)
254 3qkt_A DNA double-strand break 96.8 0.00052 1.8E-08 63.4 3.2 25 35-59 21-45 (339)
255 1w1w_A Structural maintenance 96.8 0.00064 2.2E-08 64.8 3.9 27 36-62 25-51 (430)
256 2f9l_A RAB11B, member RAS onco 96.8 0.00056 1.9E-08 57.4 3.0 24 38-61 6-29 (199)
257 1wb9_A DNA mismatch repair pro 96.8 0.00058 2E-08 70.4 3.6 26 35-60 605-630 (800)
258 4fcw_A Chaperone protein CLPB; 96.8 0.00051 1.7E-08 61.7 2.8 56 7-62 11-72 (311)
259 3gmt_A Adenylate kinase; ssgci 96.8 0.00052 1.8E-08 60.4 2.7 32 39-70 10-41 (230)
260 2wjg_A FEOB, ferrous iron tran 96.8 0.00076 2.6E-08 55.6 3.5 25 36-60 6-30 (188)
261 1ni3_A YCHF GTPase, YCHF GTP-b 96.7 0.00077 2.6E-08 63.9 3.7 39 35-73 18-63 (392)
262 1sxj_E Activator 1 40 kDa subu 96.7 0.00076 2.6E-08 61.8 3.5 21 40-60 39-59 (354)
263 1d2n_A N-ethylmaleimide-sensit 96.7 0.00083 2.8E-08 59.6 3.5 35 35-69 62-96 (272)
264 3thx_B DNA mismatch repair pro 96.7 0.00081 2.8E-08 70.2 3.9 26 35-60 671-696 (918)
265 3pvs_A Replication-associated 96.7 0.00078 2.7E-08 64.9 3.5 53 15-67 28-80 (447)
266 2www_A Methylmalonic aciduria 96.7 0.00098 3.3E-08 62.0 3.9 27 35-61 72-98 (349)
267 3tmk_A Thymidylate kinase; pho 96.7 0.00084 2.9E-08 58.5 3.2 29 35-63 3-31 (216)
268 3tqf_A HPR(Ser) kinase; transf 96.7 0.0013 4.6E-08 55.5 4.2 46 28-74 7-52 (181)
269 1tue_A Replication protein E1; 96.7 0.0013 4.3E-08 57.2 4.0 33 37-69 58-90 (212)
270 2dhr_A FTSH; AAA+ protein, hex 96.6 0.0012 4E-08 64.6 4.3 30 40-69 67-96 (499)
271 1um8_A ATP-dependent CLP prote 96.6 0.0011 3.6E-08 61.8 3.8 34 37-70 72-105 (376)
272 2gj8_A MNME, tRNA modification 96.6 0.00093 3.2E-08 55.0 2.9 25 36-60 3-27 (172)
273 2qby_A CDC6 homolog 1, cell di 96.6 0.0011 3.8E-08 60.7 3.6 27 35-61 43-69 (386)
274 4edh_A DTMP kinase, thymidylat 96.6 0.001 3.6E-08 57.6 3.2 28 35-62 4-31 (213)
275 2w58_A DNAI, primosome compone 96.6 0.00099 3.4E-08 56.1 2.9 24 38-61 55-78 (202)
276 4b4t_K 26S protease regulatory 96.6 0.0011 3.7E-08 63.6 3.5 38 36-73 205-242 (428)
277 2wji_A Ferrous iron transport 96.6 0.001 3.6E-08 54.0 3.0 23 38-60 4-26 (165)
278 3lv8_A DTMP kinase, thymidylat 96.6 0.00092 3.2E-08 59.0 2.7 28 35-62 25-52 (236)
279 2o5v_A DNA replication and rep 96.6 0.0013 4.4E-08 61.6 3.7 24 38-61 27-50 (359)
280 3v9p_A DTMP kinase, thymidylat 96.5 0.00095 3.2E-08 58.6 2.5 28 35-62 23-50 (227)
281 1x6v_B Bifunctional 3'-phospho 96.5 0.0015 5E-08 65.6 4.2 34 36-69 51-87 (630)
282 4b4t_M 26S protease regulatory 96.5 0.0012 4.1E-08 63.4 3.4 38 36-73 214-251 (434)
283 3k1j_A LON protease, ATP-depen 96.5 0.00091 3.1E-08 66.7 2.7 40 17-62 45-85 (604)
284 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.0018 6.1E-08 59.4 4.4 34 36-69 44-78 (322)
285 4b4t_L 26S protease subunit RP 96.5 0.0012 4.1E-08 63.4 3.3 38 36-73 214-251 (437)
286 3d8b_A Fidgetin-like protein 1 96.5 0.0018 6.1E-08 60.2 4.4 35 35-69 115-149 (357)
287 1e69_A Chromosome segregation 96.5 0.001 3.4E-08 61.0 2.7 24 39-62 26-49 (322)
288 1ypw_A Transitional endoplasmi 96.5 0.0014 4.8E-08 67.6 4.0 35 35-69 236-270 (806)
289 2v1u_A Cell division control p 96.5 0.0012 4.2E-08 60.5 3.2 27 35-61 42-68 (387)
290 3syl_A Protein CBBX; photosynt 96.5 0.0009 3.1E-08 60.1 2.3 27 35-61 65-91 (309)
291 3eie_A Vacuolar protein sortin 96.5 0.0015 5.1E-08 59.7 3.7 35 36-70 50-84 (322)
292 1g8f_A Sulfate adenylyltransfe 96.5 0.0014 4.6E-08 64.3 3.6 28 35-62 393-420 (511)
293 3kl4_A SRP54, signal recogniti 96.5 0.0012 3.9E-08 63.5 3.0 27 35-61 95-121 (433)
294 2r44_A Uncharacterized protein 96.5 0.0022 7.4E-08 58.4 4.7 52 8-65 22-74 (331)
295 3thx_A DNA mismatch repair pro 96.5 0.0013 4.6E-08 68.8 3.6 25 35-59 660-684 (934)
296 2r62_A Cell division protease 96.5 0.00068 2.3E-08 59.8 1.1 30 40-69 47-76 (268)
297 2axn_A 6-phosphofructo-2-kinas 96.5 0.0013 4.6E-08 64.4 3.3 28 35-62 33-60 (520)
298 3lda_A DNA repair protein RAD5 96.4 0.0011 3.9E-08 62.9 2.6 24 35-58 176-199 (400)
299 1tf7_A KAIC; homohexamer, hexa 96.4 0.0013 4.3E-08 64.5 3.0 27 35-61 279-305 (525)
300 4b4t_J 26S protease regulatory 96.4 0.0014 4.7E-08 62.4 3.0 37 37-73 182-218 (405)
301 1g41_A Heat shock protein HSLU 96.4 0.0018 6.3E-08 62.3 3.8 34 37-70 50-83 (444)
302 3pfi_A Holliday junction ATP-d 96.4 0.002 6.9E-08 58.6 3.9 32 37-68 55-86 (338)
303 2lkc_A Translation initiation 96.4 0.0025 8.6E-08 51.7 4.1 27 34-60 5-31 (178)
304 3vfd_A Spastin; ATPase, microt 96.4 0.0027 9.3E-08 59.4 4.8 37 37-73 148-184 (389)
305 3n70_A Transport activator; si 96.4 0.0018 6E-08 52.1 3.0 23 39-61 26-48 (145)
306 3auy_A DNA double-strand break 96.4 0.0014 4.9E-08 61.2 2.8 36 24-59 12-47 (371)
307 1l8q_A Chromosomal replication 96.4 0.0016 5.4E-08 59.3 3.0 25 37-61 37-61 (324)
308 1sxj_A Activator 1 95 kDa subu 96.4 0.0025 8.6E-08 62.2 4.7 34 37-70 77-110 (516)
309 4tmk_A Protein (thymidylate ki 96.4 0.0015 5.2E-08 56.6 2.7 27 36-62 2-28 (213)
310 2qag_C Septin-7; cell cycle, c 96.4 0.0013 4.4E-08 62.9 2.4 22 40-61 34-55 (418)
311 2qnr_A Septin-2, protein NEDD5 96.4 0.0011 3.6E-08 60.5 1.8 21 40-60 21-41 (301)
312 1fnn_A CDC6P, cell division co 96.3 0.0016 5.4E-08 60.0 2.9 24 39-62 46-69 (389)
313 2p67_A LAO/AO transport system 96.3 0.0016 5.5E-08 60.2 3.0 27 35-61 54-80 (341)
314 1njg_A DNA polymerase III subu 96.3 0.0017 5.8E-08 54.8 2.9 26 37-62 45-70 (250)
315 2zej_A Dardarin, leucine-rich 96.3 0.0015 5E-08 54.2 2.3 22 39-60 4-25 (184)
316 3clv_A RAB5 protein, putative; 96.3 0.0028 9.5E-08 52.2 4.1 26 35-60 5-30 (208)
317 3oes_A GTPase rhebl1; small GT 96.3 0.0018 6.1E-08 54.3 2.8 34 28-61 15-48 (201)
318 2ce7_A Cell division protein F 96.3 0.0018 6.3E-08 62.8 3.2 31 39-69 51-81 (476)
319 4b4t_H 26S protease regulatory 96.3 0.0018 6.1E-08 62.6 3.0 39 35-73 241-279 (467)
320 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0014 4.8E-08 61.4 2.2 28 38-65 25-52 (359)
321 1ko7_A HPR kinase/phosphatase; 96.3 0.0026 8.9E-08 58.5 4.0 46 28-74 135-180 (314)
322 4b4t_I 26S protease regulatory 96.3 0.0023 8E-08 61.3 3.7 38 36-73 215-252 (437)
323 2qp9_X Vacuolar protein sortin 96.3 0.0021 7.2E-08 59.7 3.4 34 37-70 84-117 (355)
324 1upt_A ARL1, ADP-ribosylation 96.3 0.003 1E-07 50.7 3.8 26 35-60 5-30 (171)
325 3dm5_A SRP54, signal recogniti 96.2 0.0033 1.1E-07 60.5 4.4 35 36-70 99-138 (443)
326 1sxj_C Activator 1 40 kDa subu 96.2 0.0019 6.4E-08 59.3 2.6 41 18-62 30-71 (340)
327 2zan_A Vacuolar protein sortin 96.2 0.004 1.4E-07 59.7 4.9 38 36-73 166-204 (444)
328 3hr8_A Protein RECA; alpha and 96.2 0.0022 7.5E-08 60.0 3.0 27 35-61 59-85 (356)
329 2qby_B CDC6 homolog 3, cell di 96.2 0.0022 7.4E-08 59.2 2.9 27 35-61 43-69 (384)
330 2ged_A SR-beta, signal recogni 96.2 0.0031 1.1E-07 52.1 3.6 27 35-61 46-72 (193)
331 2ffh_A Protein (FFH); SRP54, s 96.2 0.0024 8.3E-08 61.1 3.2 27 36-62 97-123 (425)
332 2c9o_A RUVB-like 1; hexameric 96.1 0.0027 9.1E-08 61.0 3.2 37 37-73 63-101 (456)
333 4ad8_A DNA repair protein RECN 96.1 0.0021 7.2E-08 62.7 2.5 29 35-63 58-86 (517)
334 1f6b_A SAR1; gtpases, N-termin 96.1 0.0022 7.4E-08 54.0 2.1 39 15-59 9-47 (198)
335 3lxx_A GTPase IMAP family memb 96.1 0.003 1E-07 54.7 3.1 26 36-61 28-53 (239)
336 2chg_A Replication factor C sm 96.0 0.0029 1E-07 52.8 2.9 23 39-61 40-62 (226)
337 2dyk_A GTP-binding protein; GT 96.0 0.004 1.4E-07 49.5 3.3 23 39-61 3-25 (161)
338 1u8z_A RAS-related protein RAL 96.0 0.0043 1.5E-07 49.4 3.4 24 37-60 4-27 (168)
339 1j8m_F SRP54, signal recogniti 96.0 0.0023 8E-08 58.2 2.0 26 36-61 97-122 (297)
340 1hqc_A RUVB; extended AAA-ATPa 96.0 0.0028 9.5E-08 57.1 2.5 30 37-66 38-67 (324)
341 1z0f_A RAB14, member RAS oncog 96.0 0.0037 1.3E-07 50.5 3.0 24 37-60 15-38 (179)
342 1udx_A The GTP-binding protein 96.0 0.0024 8.3E-08 60.9 2.1 27 35-61 155-181 (416)
343 1m8p_A Sulfate adenylyltransfe 95.9 0.0035 1.2E-07 62.2 3.3 28 35-62 394-421 (573)
344 3co5_A Putative two-component 95.9 0.0017 5.7E-08 52.2 0.8 24 39-62 29-52 (143)
345 2orw_A Thymidine kinase; TMTK, 95.9 0.0033 1.1E-07 52.9 2.7 26 36-61 2-27 (184)
346 2vf7_A UVRA2, excinuclease ABC 95.9 0.0011 3.9E-08 68.5 -0.3 26 35-60 521-547 (842)
347 2v3c_C SRP54, signal recogniti 95.9 0.0034 1.2E-07 60.1 3.1 35 36-70 98-137 (432)
348 2zr9_A Protein RECA, recombina 95.9 0.0034 1.2E-07 58.4 2.9 27 35-61 59-85 (349)
349 1ega_A Protein (GTP-binding pr 95.9 0.0032 1.1E-07 57.1 2.7 25 36-60 7-31 (301)
350 2ce2_X GTPase HRAS; signaling 95.9 0.0035 1.2E-07 49.7 2.5 22 39-60 5-26 (166)
351 2wsm_A Hydrogenase expression/ 95.9 0.0043 1.5E-07 52.7 3.3 26 36-61 29-54 (221)
352 1z2a_A RAS-related protein RAB 95.9 0.0045 1.5E-07 49.4 3.2 23 38-60 6-28 (168)
353 3ice_A Transcription terminati 95.9 0.0031 1E-07 59.9 2.4 52 10-61 138-198 (422)
354 3llm_A ATP-dependent RNA helic 95.9 0.0043 1.5E-07 53.8 3.2 22 37-58 76-97 (235)
355 1ky3_A GTP-binding protein YPT 95.9 0.0047 1.6E-07 50.1 3.2 24 37-60 8-31 (182)
356 1v5w_A DMC1, meiotic recombina 95.9 0.0048 1.6E-07 57.1 3.6 26 35-60 120-145 (343)
357 2fn4_A P23, RAS-related protei 95.9 0.0047 1.6E-07 50.0 3.2 25 36-60 8-32 (181)
358 3p32_A Probable GTPase RV1496/ 95.8 0.029 1E-06 51.9 9.0 36 35-70 77-117 (355)
359 2nzj_A GTP-binding protein REM 95.8 0.0046 1.6E-07 49.9 3.0 24 37-60 4-27 (175)
360 1bif_A 6-phosphofructo-2-kinas 95.8 0.0023 7.9E-08 61.7 1.4 28 35-62 37-64 (469)
361 1z0j_A RAB-22, RAS-related pro 95.8 0.0046 1.6E-07 49.5 3.0 24 38-61 7-30 (170)
362 1nrj_B SR-beta, signal recogni 95.8 0.0055 1.9E-07 51.8 3.6 26 36-61 11-36 (218)
363 1kjw_A Postsynaptic density pr 95.8 0.0015 5.1E-08 59.5 -0.0 88 35-133 103-201 (295)
364 2erx_A GTP-binding protein DI- 95.8 0.0044 1.5E-07 49.6 2.8 22 38-59 4-25 (172)
365 3u61_B DNA polymerase accessor 95.8 0.0054 1.8E-07 55.5 3.7 33 37-69 48-80 (324)
366 3uk6_A RUVB-like 2; hexameric 95.8 0.0038 1.3E-07 57.3 2.7 26 37-62 70-95 (368)
367 1ek0_A Protein (GTP-binding pr 95.8 0.0047 1.6E-07 49.4 2.9 22 39-60 5-26 (170)
368 1dek_A Deoxynucleoside monopho 95.8 0.0063 2.2E-07 53.8 4.0 31 38-68 2-32 (241)
369 1kao_A RAP2A; GTP-binding prot 95.8 0.0056 1.9E-07 48.6 3.3 23 38-60 4-26 (167)
370 2ygr_A Uvrabc system protein A 95.8 0.0025 8.4E-08 66.9 1.4 23 35-57 666-688 (993)
371 3hu3_A Transitional endoplasmi 95.8 0.0066 2.3E-07 59.0 4.4 34 37-70 238-271 (489)
372 2gco_A H9, RHO-related GTP-bin 95.7 0.0043 1.5E-07 52.0 2.6 33 28-60 16-48 (201)
373 1ypw_A Transitional endoplasmi 95.7 0.0022 7.6E-08 66.1 1.0 39 35-73 509-547 (806)
374 2zts_A Putative uncharacterize 95.7 0.005 1.7E-07 52.9 3.1 25 35-59 28-52 (251)
375 1svi_A GTP-binding protein YSX 95.7 0.005 1.7E-07 50.8 3.0 25 36-60 22-46 (195)
376 1g16_A RAS-related protein SEC 95.7 0.0045 1.5E-07 49.6 2.5 22 39-60 5-26 (170)
377 1c1y_A RAS-related protein RAP 95.7 0.0052 1.8E-07 49.0 2.9 23 38-60 4-26 (167)
378 1fzq_A ADP-ribosylation factor 95.7 0.0043 1.5E-07 51.1 2.5 26 35-60 14-39 (181)
379 1z08_A RAS-related protein RAB 95.7 0.0052 1.8E-07 49.3 2.9 23 38-60 7-29 (170)
380 1wms_A RAB-9, RAB9, RAS-relate 95.7 0.0053 1.8E-07 49.7 3.0 23 38-60 8-30 (177)
381 2qgz_A Helicase loader, putati 95.7 0.0049 1.7E-07 56.2 3.0 25 37-61 152-176 (308)
382 2hf9_A Probable hydrogenase ni 95.7 0.0057 1.9E-07 52.1 3.3 26 36-61 37-62 (226)
383 2gks_A Bifunctional SAT/APS ki 95.7 0.0035 1.2E-07 61.9 2.0 28 35-62 370-397 (546)
384 2iwr_A Centaurin gamma 1; ANK 95.7 0.0071 2.4E-07 49.1 3.6 24 37-60 7-30 (178)
385 3q85_A GTP-binding protein REM 95.7 0.0049 1.7E-07 49.5 2.6 22 39-60 4-25 (169)
386 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.005 1.7E-07 60.1 3.0 52 5-62 14-66 (500)
387 2a9k_A RAS-related protein RAL 95.6 0.0063 2.1E-07 49.5 3.2 25 36-60 17-41 (187)
388 2z4s_A Chromosomal replication 95.6 0.0051 1.7E-07 58.9 3.0 25 37-61 130-154 (440)
389 2r6a_A DNAB helicase, replicat 95.6 0.0065 2.2E-07 58.3 3.7 27 35-61 201-227 (454)
390 1r2q_A RAS-related protein RAB 95.6 0.0049 1.7E-07 49.2 2.4 24 37-60 6-29 (170)
391 1m2o_B GTP-binding protein SAR 95.6 0.0056 1.9E-07 51.0 2.8 26 35-60 21-46 (190)
392 1m7b_A RND3/RHOE small GTP-bin 95.6 0.0056 1.9E-07 50.4 2.8 25 36-60 6-30 (184)
393 3pqc_A Probable GTP-binding pr 95.6 0.0059 2E-07 50.1 2.9 23 38-60 24-46 (195)
394 2z43_A DNA repair and recombin 95.6 0.0071 2.4E-07 55.3 3.7 27 35-61 105-131 (324)
395 2r6f_A Excinuclease ABC subuni 95.6 0.0023 7.8E-08 67.0 0.4 23 35-57 648-670 (972)
396 4dhe_A Probable GTP-binding pr 95.6 0.0058 2E-07 51.7 2.9 25 36-60 28-52 (223)
397 3kkq_A RAS-related protein M-R 95.6 0.0076 2.6E-07 49.1 3.5 24 37-60 18-41 (183)
398 2bjv_A PSP operon transcriptio 95.6 0.0065 2.2E-07 53.4 3.2 25 38-62 30-54 (265)
399 3k53_A Ferrous iron transport 95.6 0.0063 2.1E-07 54.0 3.1 25 37-61 3-27 (271)
400 2hxs_A RAB-26, RAS-related pro 95.6 0.0079 2.7E-07 48.7 3.5 24 37-60 6-29 (178)
401 1xx6_A Thymidine kinase; NESG, 95.6 0.0076 2.6E-07 51.3 3.5 27 35-61 6-32 (191)
402 3pxg_A Negative regulator of g 95.6 0.007 2.4E-07 58.3 3.7 23 39-61 203-225 (468)
403 3ihw_A Centg3; RAS, centaurin, 95.6 0.0079 2.7E-07 49.8 3.5 28 33-60 16-43 (184)
404 3bc1_A RAS-related protein RAB 95.5 0.0065 2.2E-07 49.6 2.9 23 38-60 12-34 (195)
405 3con_A GTPase NRAS; structural 95.5 0.0065 2.2E-07 50.0 2.9 23 38-60 22-44 (190)
406 3q72_A GTP-binding protein RAD 95.5 0.0042 1.4E-07 49.7 1.7 22 39-60 4-25 (166)
407 3bwd_D RAC-like GTP-binding pr 95.5 0.0081 2.8E-07 48.8 3.5 25 36-60 7-31 (182)
408 1r8s_A ADP-ribosylation factor 95.5 0.0067 2.3E-07 48.4 2.9 21 40-60 3-23 (164)
409 3tw8_B RAS-related protein RAB 95.5 0.0049 1.7E-07 49.9 2.1 23 38-60 10-32 (181)
410 2gf9_A RAS-related protein RAB 95.5 0.0075 2.6E-07 49.7 3.3 24 37-60 22-45 (189)
411 2j37_W Signal recognition part 95.5 0.0091 3.1E-07 58.3 4.3 36 35-70 99-139 (504)
412 2fv8_A H6, RHO-related GTP-bin 95.5 0.0062 2.1E-07 51.3 2.7 30 31-60 19-48 (207)
413 2oil_A CATX-8, RAS-related pro 95.5 0.0068 2.3E-07 50.1 2.9 23 38-60 26-48 (193)
414 2b8t_A Thymidine kinase; deoxy 95.5 0.0072 2.5E-07 52.8 3.2 27 35-61 10-36 (223)
415 3bh0_A DNAB-like replicative h 95.5 0.0076 2.6E-07 55.0 3.5 26 35-60 66-91 (315)
416 4dsu_A GTPase KRAS, isoform 2B 95.5 0.0068 2.3E-07 49.5 2.8 23 38-60 5-27 (189)
417 2y8e_A RAB-protein 6, GH09086P 95.5 0.0063 2.1E-07 49.1 2.5 23 38-60 15-37 (179)
418 2bov_A RAla, RAS-related prote 95.5 0.0084 2.9E-07 49.8 3.4 24 37-60 14-37 (206)
419 1z06_A RAS-related protein RAB 95.5 0.008 2.7E-07 49.5 3.2 26 35-60 18-43 (189)
420 1sxj_D Activator 1 41 kDa subu 95.4 0.006 2.1E-07 55.4 2.6 23 40-62 61-83 (353)
421 3cf2_A TER ATPase, transitiona 95.4 0.0094 3.2E-07 61.4 4.2 36 35-70 236-271 (806)
422 1moz_A ARL1, ADP-ribosylation 95.4 0.0058 2E-07 49.8 2.1 24 35-58 16-39 (183)
423 2atv_A RERG, RAS-like estrogen 95.4 0.01 3.4E-07 49.3 3.6 26 35-60 26-51 (196)
424 2efe_B Small GTP-binding prote 95.4 0.0081 2.8E-07 48.7 2.9 24 37-60 12-35 (181)
425 2cxx_A Probable GTP-binding pr 95.4 0.0058 2E-07 50.0 2.0 22 39-60 3-24 (190)
426 4hlc_A DTMP kinase, thymidylat 95.4 0.0084 2.9E-07 51.4 3.1 26 37-62 2-27 (205)
427 1g8p_A Magnesium-chelatase 38 95.3 0.006 2E-07 55.5 2.2 23 40-62 48-70 (350)
428 1ksh_A ARF-like protein 2; sma 95.3 0.0088 3E-07 49.0 3.1 26 35-60 16-41 (186)
429 2xtp_A GTPase IMAP family memb 95.3 0.0082 2.8E-07 52.6 3.0 25 36-60 21-45 (260)
430 1knx_A Probable HPR(Ser) kinas 95.3 0.0086 3E-07 54.9 3.2 45 28-73 138-182 (312)
431 2qtf_A Protein HFLX, GTP-bindi 95.3 0.0069 2.4E-07 56.6 2.6 23 38-60 180-202 (364)
432 2g6b_A RAS-related protein RAB 95.3 0.0093 3.2E-07 48.3 3.1 24 37-60 10-33 (180)
433 3lxw_A GTPase IMAP family memb 95.3 0.0086 2.9E-07 52.6 3.0 26 36-61 20-45 (247)
434 2bme_A RAB4A, RAS-related prot 95.3 0.0077 2.6E-07 49.2 2.5 23 38-60 11-33 (186)
435 2xxa_A Signal recognition part 95.3 0.0091 3.1E-07 57.2 3.4 36 35-70 98-139 (433)
436 3t1o_A Gliding protein MGLA; G 95.3 0.0098 3.4E-07 48.8 3.2 25 38-62 15-39 (198)
437 2qu8_A Putative nucleolar GTP- 95.3 0.0097 3.3E-07 51.0 3.3 25 36-60 28-52 (228)
438 3te6_A Regulatory protein SIR3 95.3 0.0099 3.4E-07 54.7 3.5 28 34-61 42-69 (318)
439 2vf7_A UVRA2, excinuclease ABC 95.3 0.0061 2.1E-07 63.1 2.3 22 35-56 34-55 (842)
440 2i1q_A DNA repair and recombin 95.3 0.0078 2.7E-07 54.8 2.8 26 35-60 96-121 (322)
441 3tvt_A Disks large 1 tumor sup 95.3 0.0017 5.9E-08 59.1 -1.6 87 35-132 98-195 (292)
442 2p5s_A RAS and EF-hand domain 95.3 0.011 3.7E-07 49.3 3.4 26 35-60 26-51 (199)
443 1vg8_A RAS-related protein RAB 95.2 0.01 3.5E-07 49.4 3.2 25 37-61 8-32 (207)
444 1a5t_A Delta prime, HOLB; zinc 95.2 0.01 3.6E-07 54.4 3.5 46 14-62 3-49 (334)
445 3pih_A Uvrabc system protein A 95.2 0.0065 2.2E-07 63.4 2.3 20 35-54 608-627 (916)
446 3tkl_A RAS-related protein RAB 95.2 0.0095 3.2E-07 49.1 2.9 23 38-60 17-39 (196)
447 2e87_A Hypothetical protein PH 95.2 0.0084 2.9E-07 55.5 2.8 27 35-61 165-191 (357)
448 1mh1_A RAC1; GTP-binding, GTPa 95.2 0.0098 3.3E-07 48.4 2.9 23 38-60 6-28 (186)
449 2gf0_A GTP-binding protein DI- 95.2 0.012 4.1E-07 48.5 3.4 24 37-60 8-31 (199)
450 3iev_A GTP-binding protein ERA 95.2 0.0085 2.9E-07 54.4 2.7 26 35-60 8-33 (308)
451 4ag6_A VIRB4 ATPase, type IV s 95.2 0.0094 3.2E-07 55.7 3.1 24 38-61 36-59 (392)
452 1mky_A Probable GTP-binding pr 95.2 0.011 3.6E-07 56.5 3.5 25 37-61 180-204 (439)
453 2q3h_A RAS homolog gene family 95.2 0.011 3.6E-07 49.2 3.1 27 34-60 17-43 (201)
454 2fh5_B SR-beta, signal recogni 95.2 0.011 3.8E-07 49.7 3.2 24 37-60 7-30 (214)
455 2fg5_A RAB-22B, RAS-related pr 95.1 0.0092 3.2E-07 49.5 2.6 24 37-60 23-46 (192)
456 3t5g_A GTP-binding protein RHE 95.1 0.0081 2.8E-07 48.9 2.2 23 37-59 6-28 (181)
457 1zj6_A ADP-ribosylation factor 95.1 0.012 4E-07 48.4 3.2 26 35-60 14-39 (187)
458 2a5j_A RAS-related protein RAB 95.1 0.011 3.7E-07 48.9 2.9 23 38-60 22-44 (191)
459 1yrb_A ATP(GTP)binding protein 95.1 0.015 5E-07 50.7 3.9 36 35-70 12-51 (262)
460 3cph_A RAS-related protein SEC 95.1 0.013 4.5E-07 49.0 3.4 26 35-60 18-43 (213)
461 1jr3_A DNA polymerase III subu 95.1 0.011 3.7E-07 54.2 3.1 26 37-62 38-63 (373)
462 3pxi_A Negative regulator of g 95.1 0.011 3.8E-07 60.2 3.4 31 39-69 523-556 (758)
463 1r6b_X CLPA protein; AAA+, N-t 95.0 0.014 4.7E-07 59.4 4.1 32 39-70 490-521 (758)
464 1p6x_A Thymidine kinase; P-loo 95.0 0.0079 2.7E-07 55.7 2.0 30 33-62 3-32 (334)
465 1zd9_A ADP-ribosylation factor 95.0 0.012 4E-07 48.6 2.9 25 36-60 21-45 (188)
466 4bas_A ADP-ribosylation factor 95.0 0.0098 3.3E-07 49.1 2.4 26 35-60 15-40 (199)
467 1x3s_A RAS-related protein RAB 95.0 0.012 4.1E-07 48.3 2.9 23 38-60 16-38 (195)
468 3t34_A Dynamin-related protein 95.0 0.01 3.6E-07 54.9 2.8 22 38-59 35-56 (360)
469 2h17_A ADP-ribosylation factor 95.0 0.01 3.5E-07 48.6 2.4 26 35-60 19-44 (181)
470 2bcg_Y Protein YP2, GTP-bindin 95.0 0.011 3.6E-07 49.5 2.5 23 38-60 9-31 (206)
471 2cjw_A GTP-binding protein GEM 95.0 0.012 4.2E-07 49.0 2.9 23 38-60 7-29 (192)
472 3dz8_A RAS-related protein RAB 95.0 0.01 3.5E-07 49.1 2.4 25 37-61 23-47 (191)
473 2qen_A Walker-type ATPase; unk 94.9 0.017 5.7E-07 52.1 3.9 25 38-62 32-56 (350)
474 1zbd_A Rabphilin-3A; G protein 94.9 0.013 4.6E-07 48.7 3.0 23 38-60 9-31 (203)
475 3pxi_A Negative regulator of g 94.9 0.014 4.7E-07 59.5 3.7 23 39-61 203-225 (758)
476 1u94_A RECA protein, recombina 94.9 0.012 4.2E-07 54.8 3.0 26 35-60 61-86 (356)
477 3reg_A RHO-like small GTPase; 94.9 0.013 4.6E-07 48.4 2.9 24 37-60 23-46 (194)
478 3tsz_A Tight junction protein 94.9 0.029 1E-06 52.9 5.6 65 35-131 230-294 (391)
479 3b1v_A Ferrous iron uptake tra 94.9 0.014 4.7E-07 52.3 3.1 23 38-60 4-26 (272)
480 2il1_A RAB12; G-protein, GDP, 94.9 0.01 3.4E-07 49.3 2.1 22 38-59 27-48 (192)
481 2ew1_A RAS-related protein RAB 94.8 0.012 4.1E-07 49.6 2.5 23 38-60 27-49 (201)
482 3c5c_A RAS-like protein 12; GD 94.8 0.016 5.4E-07 47.9 3.2 24 37-60 21-44 (187)
483 2vhj_A Ntpase P4, P4; non- hyd 94.8 0.012 4.2E-07 54.3 2.7 26 35-60 121-146 (331)
484 3cbq_A GTP-binding protein REM 94.8 0.012 4.1E-07 49.2 2.4 23 37-59 23-45 (195)
485 3ch4_B Pmkase, phosphomevalona 94.8 0.021 7.2E-07 49.1 3.9 28 35-62 9-36 (202)
486 3pih_A Uvrabc system protein A 94.8 0.0081 2.8E-07 62.7 1.5 22 35-56 22-43 (916)
487 2b6h_A ADP-ribosylation factor 94.8 0.019 6.7E-07 47.6 3.6 26 34-59 26-51 (192)
488 2o52_A RAS-related protein RAB 94.8 0.012 4E-07 49.3 2.2 23 38-60 26-48 (200)
489 3shw_A Tight junction protein 94.7 0.03 1E-06 54.1 5.3 92 35-158 222-318 (468)
490 2qag_A Septin-2, protein NEDD5 94.7 0.011 3.6E-07 55.2 2.0 22 39-60 39-60 (361)
491 2ygr_A Uvrabc system protein A 94.7 0.0096 3.3E-07 62.5 1.9 22 35-56 44-65 (993)
492 3cpj_B GTP-binding protein YPT 94.7 0.016 5.4E-07 49.4 3.0 23 38-60 14-36 (223)
493 3iby_A Ferrous iron transport 94.7 0.014 4.7E-07 51.7 2.6 22 39-60 3-24 (256)
494 2h57_A ADP-ribosylation factor 94.7 0.011 3.6E-07 48.8 1.8 25 36-60 20-44 (190)
495 2dy1_A Elongation factor G; tr 94.7 0.018 6.3E-07 58.0 3.8 28 35-62 7-34 (665)
496 2r6f_A Excinuclease ABC subuni 94.7 0.0099 3.4E-07 62.2 1.9 22 35-56 42-63 (972)
497 3th5_A RAS-related C3 botulinu 93.7 0.0056 1.9E-07 51.3 0.0 24 36-59 29-52 (204)
498 2fu5_C RAS-related protein RAB 94.7 0.0093 3.2E-07 48.6 1.3 23 38-60 9-31 (183)
499 2q6t_A DNAB replication FORK h 94.7 0.017 5.7E-07 55.2 3.3 27 35-61 198-224 (444)
500 3a1s_A Iron(II) transport prot 94.7 0.014 4.9E-07 51.6 2.7 24 37-60 5-28 (258)
No 1
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=100.00 E-value=4.6e-70 Score=504.23 Aligned_cols=253 Identities=40% Similarity=0.717 Sum_probs=240.4
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHH
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDA 115 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~ 115 (298)
.+.+|+|+||||||||||+..||+.+++++||+||+|||++++|+|++|++.|+.+++|||++..++.+.|++++|.+.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a 88 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDA 88 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC----------
Q psy8556 116 LFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN---------- 185 (298)
Q Consensus 116 ~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~---------- 185 (298)
.+.+.++..+|++||+||||++|++++++|+.++|+.|+++|.+++..+.+.|+..||+.|+++||++|+
T Consensus 89 ~~~i~~i~~~g~~pilVGGTglYi~all~gl~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~DP~~A~ri~pnd~~Ri 168 (316)
T 3foz_A 89 LAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRL 168 (316)
T ss_dssp HHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHhCHHHHhhCCCccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ---------------------------------CCC-ChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCccc
Q psy8556 186 ---------------------------------QPS-NRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMK 231 (298)
Q Consensus 186 ---------------------------------~~~-~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~~ 231 (298)
+.+ ||++||+||++||+.|+++| |++||+.|++.+.+..+.++++
T Consensus 169 ~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~i~L~~~~R~~L~~RI~~Rvd~Ml~~G-l~eEv~~L~~~~~~~~~~~~~~ 247 (316)
T 3foz_A 169 SRALEVFFISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRFHQMLASG-FEAEVRALFARGDLHTDLPSIR 247 (316)
T ss_dssp HHHHHHHHHHSSCHHHHHTSCCCCCSSEEEEEEEECSSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHSCCCTTSTTTT
T ss_pred HHHHHHHHHHCCCHHHHhhccCCCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHccCCCccCccce
Confidence 224 89999999999999999999 9999999999844678899999
Q ss_pred ccChhhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCCchHHHH
Q psy8556 232 CIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQK 289 (298)
Q Consensus 232 ~IGyke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~~~~~~~ 289 (298)
+|||||+++||+|+++++++++.++.+||||||||+||||++++++|+|.++.+.+..
T Consensus 248 aIGYkE~~~yL~G~~s~~eai~~~~~~TR~yAKRQ~TWfR~~~~~~w~~~~~~~~~~~ 305 (316)
T 3foz_A 248 CVGYRQMWSYLEGEISYDEMVYRGVCATRQLAKRQITWLRGWEGVHWLDSEKPEQARD 305 (316)
T ss_dssp STTHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSSCEEEETTCHHHHHH
T ss_pred eeehhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEeCCcChHHHHH
Confidence 9999999999999999999999999999999999999999999999999877554433
No 2
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=100.00 E-value=1.6e-69 Score=501.32 Aligned_cols=255 Identities=36% Similarity=0.537 Sum_probs=239.1
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHH
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDA 115 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~ 115 (298)
++++|+|+||||||||||+..||+.+++++||+||+|||++++|+|++|++.|+.+++|||++..++.+.|++++|.+.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a 81 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA 81 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCC-CCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC---------
Q psy8556 116 LFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPP-ANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN--------- 185 (298)
Q Consensus 116 ~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~-~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~--------- 185 (298)
.+.+.++..+|++||+||||++|++|+++|+...|. .|+++|+++...+.+.|+..||+.|+++||++|+
T Consensus 82 ~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~DP~~A~~i~pnd~~R 161 (322)
T 3exa_A 82 TPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRR 161 (322)
T ss_dssp HHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSCTTCHHH
T ss_pred HHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhhcCcccHHH
Confidence 999999999999999999999999999999877666 6889999999999999999999999999999987
Q ss_pred -----------------------------------CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCcc
Q psy8556 186 -----------------------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSM 230 (298)
Q Consensus 186 -----------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~~ 230 (298)
+.+||++||+||++||+.|+++| |++||+.|+.. + ..+.+++
T Consensus 162 i~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~G-l~eEv~~L~~~-~-~~~~~a~ 238 (322)
T 3exa_A 162 VIRALEIIKLTGKTVTEQARHEEETPSPYNLVMIGLTMERDVLYDRINRRVDQMVEEG-LIDEAKKLYDR-G-IRDCQSV 238 (322)
T ss_dssp HHHHHHHHHHTC--------------CCSEEEEEEEECCHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHT-T-CCSSTGG
T ss_pred HHHHHHHHHHHCCCHHHHhhhccCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhc-C-CCcCccc
Confidence 23589999999999999999999 99999999998 5 7789999
Q ss_pred cccChhhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCCchHHHHHHHHH
Q psy8556 231 KCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLI 294 (298)
Q Consensus 231 ~~IGyke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~~~~~~~~~~~~ 294 (298)
++|||||+++||+|+++++++++.++.+||||||||+||||++++++|+|.+++ ..+++++.|
T Consensus 239 ~aIGYkE~~~yL~G~~sl~eaie~i~~~TR~yAKRQ~TWfR~~~~~~w~~~~~~-~~~~i~~~i 301 (322)
T 3exa_A 239 QAIGYKEMYDYLDGNVTLEEAIDTLKRNSRRYAKRQLTWFRNKANVTWFDMTDV-DFDKKIMEI 301 (322)
T ss_dssp GSTTTHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEECTTC-CHHHHHHHH
T ss_pred eeeeHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEeCCCCC-CHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998764 344444443
No 3
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=100.00 E-value=5.1e-63 Score=461.16 Aligned_cols=258 Identities=41% Similarity=0.745 Sum_probs=203.7
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHHH
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDAL 116 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~ 116 (298)
+.+|+|+||||||||||+..||+.+++++|++|+.|+|+|++++|++|+..++.+++||+++..++.+.+++..|.+.+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~ 84 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADAL 84 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC-----------
Q psy8556 117 FSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN----------- 185 (298)
Q Consensus 117 ~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~----------- 185 (298)
+.+.++..+|+.||++|||++|++++++++.++|+.++++|.+++..+.+.|++.||+.|+++||++|+
T Consensus 85 ~~i~~i~~~g~~~IlvGGt~~y~~all~g~~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~nd~~Ri~ 164 (323)
T 3crm_A 85 AAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQRLM 164 (323)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHCCC--------------------------------------------------
T ss_pred HHHHHHHHcCCeEEEECCchhhHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHhCHHHHhhcCCCCHHHHH
Confidence 999999999999999999999999999999888988999999999999999999999999999999876
Q ss_pred --------------------C-----------------------CC-ChHHHHHHHHHHHHHHHhccchHHHHHHHHHhc
Q psy8556 186 --------------------Q-----------------------PS-NRHILHKRISDRFKKMLDQDLLINEVKKIRKKW 221 (298)
Q Consensus 186 --------------------~-----------------------~~-~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~ 221 (298)
- .. ||++||+||++||+.|+++| |++||+.|+..+
T Consensus 165 RALEv~~~tG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~~L~~RI~~Rvd~M~~~G-l~~Ev~~L~~~~ 243 (323)
T 3crm_A 165 RALEVYRLGGVSMSDLRRRQSAEKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQG-FIAEVEALHARS 243 (323)
T ss_dssp -----------------------------------CSEEEEEEEECSSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHTCT
T ss_pred HHHHHHHHHCCCHHHHHhhccccccccccccccCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhcC
Confidence 0 02 49999999999999999999 999999999874
Q ss_pred CCCCCCCcccccChhhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCCchHHHHHHHHHH
Q psy8556 222 NLNLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKILNLIK 295 (298)
Q Consensus 222 ~~~~~~~~~~~IGyke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~~~~~~~~~~~~~ 295 (298)
++..+.+++++|||||+++||+|+++++++++.++.+||||||||+||||++++++|++.++++..+.+++.+.
T Consensus 244 ~~~~~~~~~~aIGyke~~~yl~g~~~~~eai~~~~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~~~~~~~~~~~~ 317 (323)
T 3crm_A 244 DLHAGLPSIRAVGYRQVWDYLDGKLSYAEMTERGIIATRQLAKRQFTWLRSWSHLHWMDSLAGDNLPRALRYLK 317 (323)
T ss_dssp TCCTTSSGGGSTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCEEEETTCSCHHHHHHHHHH
T ss_pred CCCCCCcchheecHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEecCCCchHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999766555566666554
No 4
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=100.00 E-value=7.1e-63 Score=470.78 Aligned_cols=247 Identities=26% Similarity=0.445 Sum_probs=222.5
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHHH
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDAL 116 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~ 116 (298)
+++|+|+||||||||||+..|+..+++++||+|++|||++++|+|++|+..|+.+++|||++..++.+.|++++|.+.+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~ 81 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECM 81 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCC-CCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC----------
Q psy8556 117 FSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPP-ANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN---------- 185 (298)
Q Consensus 117 ~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~-~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~---------- 185 (298)
+.|.++..+|++||+||||++|++|+++++++.|+ .++.++..+ ..+...|+.+||+.|+++||++|+
T Consensus 82 ~~i~~i~~~g~~pilVGGTglYi~aLl~gl~~~~~~~~~~~r~~~-~~~~~~g~~~L~~~L~~~DP~~A~rihpnd~~Ri 160 (409)
T 3eph_A 82 NAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQL-DILESTDPDVIYNTLVKCDPDIATKYHPNDYRRV 160 (409)
T ss_dssp HHHHHHHTTTCEEEEECSCGGGGGGGGTCSCCCSSSCCCCCHHHH-HHHTCSSSSSHHHHHHHSCHHHHTTSCTTCHHHH
T ss_pred HHHHHHHhcCCCEEEECChHHHHHHHHccccCCCCccCHHHHHHH-HHHhccCHHHHHHHHHHhCHHHHHhcCcccHHHH
Confidence 99999999999999999999999999999876664 455555544 356667789999999999999887
Q ss_pred ---------------------------------CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCC------CC
Q psy8556 186 ---------------------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLN------LN 226 (298)
Q Consensus 186 ---------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~------~~ 226 (298)
+..||++||+||++||+.|+++| |++||+.|+..+... ..
T Consensus 161 ~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~G-lleEv~~L~~~~~~~~~~~~~~~ 239 (409)
T 3eph_A 161 QRMLEIYYKTGKKPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERG-ALQEIKQLYEYYSQNKFTPEQCE 239 (409)
T ss_dssp HHHHHHHHHHCSCHHHHHHTCCCCCSSEEEEEEEECCHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTTTTCCGGGTT
T ss_pred HHHHHHHHHHCCCHHHHHhhccCCCCcceEEEEEeCCHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHhcccccccccccc
Confidence 34689999999999999999999 999999999873111 23
Q ss_pred CCcccccChhhHHHHHcC-----CCCHHHHHHHHHHHHHHHHhHHHHHhcCC------CCceeecCCCch
Q psy8556 227 LPSMKCIGYRQTWEYIDG-----LIDRNTLKEKSIIATRQLAKQQLTWLRNM------NEKITIDCLEKN 285 (298)
Q Consensus 227 ~~~~~~IGyke~~~~l~g-----~~~~~~~~~~~~~~tr~yakrQ~twfr~~------~~~~~~~~~~~~ 285 (298)
.+++++|||||+++||+| +++++++++.++.+||||||||+||||++ .+++|+|.++.+
T Consensus 240 ~~~~~aIGYkE~~~yL~g~~~~~e~~l~eaie~ik~~TRqyAKRQ~TWfR~~~~~~~~~~i~~lD~t~~~ 309 (409)
T 3eph_A 240 NGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDIYLLDATDLS 309 (409)
T ss_dssp SGGGGSTTTGGGGGGGC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTCEEEEECSCTT
T ss_pred ccchhcccHHHHHHHHcCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEcCCChh
Confidence 689999999999999999 58999999999999999999999999999 689999987755
No 5
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=100.00 E-value=9.8e-61 Score=448.30 Aligned_cols=254 Identities=32% Similarity=0.440 Sum_probs=232.6
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHHHHH
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALF 117 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~~~~ 117 (298)
.+|+|+||||||||||+..|++.+++++||+|+.|+|++++++|++|+..++.+++||+++..++.+.+++.+|.+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~ 87 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEK 87 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhcCCceEEEchhHHHHHHHHccCCCCCC-CCHH----HHHHHHHHHHhhCHHHHHHHHhcCCccccC-------
Q psy8556 118 SIKNILKKKKLPLLVGGTMLYFKALRDGINKLPP-ANLK----LRTKFNIDINKYGISFLYDKLKLLDPVTAN------- 185 (298)
Q Consensus 118 ~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~-~d~~----lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~------- 185 (298)
.+.++..+++.||++||+++|+++++.+++.+|+ .|++ +++++.+ +.++|++.++++|+.+||.+++
T Consensus 88 ~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~~~~~~~d~~~~~Rlrrrl~r-~~~~G~~~l~~~L~~vdP~~a~~I~p~d~ 166 (340)
T 3d3q_A 88 YIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKE-LEHLNNNKLHEYLASFDKESAKDIHPNNR 166 (340)
T ss_dssp HHHHHHHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHHHT-TSSSCHHHHHHHHHHHCHHHHHHSCTTCH
T ss_pred HHHHHHhCCCcEEEECChhhhHHHHHhcccccCCCCChHHHHHHHHHHHH-HHhcCHHHHHHHHHhhCcHHHhhcCccCc
Confidence 9999988999999999999999999999877788 8888 9999988 8899999999999999999876
Q ss_pred ------------------------------------CCCChHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCc
Q psy8556 186 ------------------------------------QPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPS 229 (298)
Q Consensus 186 ------------------------------------~~~~r~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~~~~~ 229 (298)
+.+||++|++||++||+.|+++| |++||+.|++. ++. +.++
T Consensus 167 ~Ri~RALEv~~~tG~~~s~~~~~~~~~~~~~~~~~~L~~~r~~L~~RI~~Rvd~M~~~G-l~~Ev~~L~~~-~~~-~~~~ 243 (340)
T 3d3q_A 167 KRVLRAIEYYLKTKKLLSSRKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHG-LFNEVQHLVEQ-GFE-ASQS 243 (340)
T ss_dssp HHHHHHHHHHHHHCSCSHHHHHHHHHSBCSEEEEEEEECCHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHT-TCT-TSSG
T ss_pred hhhhhHHHHHHHhCCChHHHhhhccCCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHc-CCC-cchh
Confidence 23589999999999999999999 99999999987 444 7899
Q ss_pred ccccChhhHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCC---chHHHHHHHHHH
Q psy8556 230 MKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLE---KNCVQKILNLIK 295 (298)
Q Consensus 230 ~~~IGyke~~~~l~g~~~~~~~~~~~~~~tr~yakrQ~twfr~~~~~~~~~~~~---~~~~~~~~~~~~ 295 (298)
+++|||||+++||+|+++++++++.++.+||||||||+||||++++++|++.++ .+..+.+++++.
T Consensus 244 ~~aIGyke~~~yl~g~~~~~ea~~~~~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~~~~~~~~~~~~~~~ 312 (340)
T 3d3q_A 244 MQAIGYKELVPVIKGNISMENAVEKLKQHSRQYAKRQLTWFKNKMNVHWLNKERMSLQMMLDEITTQIN 312 (340)
T ss_dssp GGSTTTTTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEETTTCCHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeecCcccchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998643 222344555554
No 6
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=100.00 E-value=4.6e-54 Score=402.12 Aligned_cols=234 Identities=22% Similarity=0.269 Sum_probs=195.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCc-CccchHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEP-TKSYSVIQFCE 113 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~-~e~~s~~~f~~ 113 (298)
.++++|+|+||||||||||+..||+.+++++||+|++|||+|++|+|++|+..|+.+++|||+++.++ .+.|++.+|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~ 117 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRS 117 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHH
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccC---CCCCh
Q psy8556 114 DALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTAN---QPSNR 190 (298)
Q Consensus 114 ~~~~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~---~~~~r 190 (298)
.+.+.+.++..++++||++|||++|+++++.++.+.++.|+.-.. . .+ .+....+...- ++++|
T Consensus 118 ~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~--------~-~~----~~~~~~~~~~~~i~L~~~r 184 (339)
T 3a8t_A 118 LAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEG--------S-HS----VVSSELRYDCCFLWVDVSV 184 (339)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC--------------------------CBSSEEEEEEEECCH
T ss_pred HHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhc--------c-cC----ccccccccCeEEEEEeCCH
Confidence 999999999999999999999999999999987332224442111 0 00 11111111111 55689
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCC-------CCCcccccChhhHHHHHcC-----------------CC
Q psy8556 191 HILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNL-------NLPSMKCIGYRQTWEYIDG-----------------LI 246 (298)
Q Consensus 191 ~~L~~ri~~Rv~~M~~~G~l~~Ev~~l~~~~~~~~-------~~~~~~~IGyke~~~~l~g-----------------~~ 246 (298)
++|++||++|++.|+++| +++||+.|+.. +... ..+++|+|||||+++||+| ++
T Consensus 185 e~L~~RI~~R~~~Ml~~G-l~eEv~~L~~~-~~~~~~~~~~~~~~~~~aIGykE~~~yl~g~~~~~~~~~~~~~~~~~~~ 262 (339)
T 3a8t_A 185 KVLTDYLAKRVDDMLELG-MFDELAEFYSP-EDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRG 262 (339)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHCCT-TCSCTTSCGGGSCGGGGSTTHHHHHHHHHHSCTTCCCCSCCTTHHHHHH
T ss_pred HHHHHHHHhhccHhhhcc-HHHHHHHHHHh-cCccccccchhccHHHHHhhHHHHHHHHcCcccccccccccccchhhhc
Confidence 999999999999999999 99999999987 3322 2899999999999999998 57
Q ss_pred CHHHHHHHHHHHHHHHHhHHHHHhcCCCC----ceeecCCC
Q psy8556 247 DRNTLKEKSIIATRQLAKQQLTWLRNMNE----KITIDCLE 283 (298)
Q Consensus 247 ~~~~~~~~~~~~tr~yakrQ~twfr~~~~----~~~~~~~~ 283 (298)
+++++++.++.+||||||||+||||++.+ ++|+|.++
T Consensus 263 ~l~eaie~ik~~TR~yAKRQ~tWfr~~~~~~w~i~~lDat~ 303 (339)
T 3a8t_A 263 AFEEAVRAIKENTCHLAKRQIGKILRLKGAGWDLRRLDATE 303 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeecccc
Confidence 89999999999999999999999998764 45676543
No 7
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.96 E-value=1.4e-28 Score=221.77 Aligned_cols=205 Identities=17% Similarity=0.160 Sum_probs=164.4
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCc-cchHHHHHHHHH
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTK-SYSVIQFCEDAL 116 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e-~~s~~~f~~~~~ 116 (298)
++|+|+||||||||||++.||+.++.++++.|+.++|+++++++.+|+..+..+++|++++...+.+ .++...|.+.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999877766 789999999888
Q ss_pred HhhHHHhhcCCceEEEchhHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCccccCCCCC-hHHHHH
Q psy8556 117 FSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSN-RHILHK 195 (298)
Q Consensus 117 ~~i~~i~~~~~~~IlvGGt~~y~~~ll~~~~~~p~~d~~lr~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~~~~-r~~L~~ 195 (298)
..+ ++..+++.+|++||++.|+++++..... ..+ .+....-+..+ ++.+.+
T Consensus 82 ~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~-----------------~~~----------~~~~~i~l~~~~~e~l~~ 133 (253)
T 2ze6_A 82 FEV-DWRKSEEGLILEGGSISLLNCMAKSPFW-----------------RSG----------FQWHVKRLRLGDSDAFLT 133 (253)
T ss_dssp HHH-HTTTTSSEEEEEECCHHHHHHHHHCTTT-----------------TSS----------CEEEEEECCCCCHHHHHH
T ss_pred HHH-HHHhCCCCeEEeccHHHHHHHHHhcccc-----------------ccc----------CceEEEEecchhHHHHHH
Confidence 888 8888899999999999888887754100 000 00000002234 699999
Q ss_pred HHHHHHHHHHhc-----cchHHHHHHHHHhcCCCCCCCcccccChhhHHHHHc------CC------CCHHHHHHHHHHH
Q psy8556 196 RISDRFKKMLDQ-----DLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYID------GL------IDRNTLKEKSIIA 258 (298)
Q Consensus 196 ri~~Rv~~M~~~-----G~l~~Ev~~l~~~~~~~~~~~~~~~IGyke~~~~l~------g~------~~~~~~~~~~~~~ 258 (298)
|+.+|.++|+.. + +++|+..+++.... ...+...+||+|+++|+. ++ ..++++++.|+.+
T Consensus 134 Rl~~R~~~ml~~~~~~~~-~l~e~~~~~~~p~~--~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 210 (253)
T 2ze6_A 134 RAKQRVAEMFAIREDRPS-LLEELAELWNYPAA--RPILEDIDGYRCAIRFARKHDLAISQLPNIDAGRHVELIEAIANE 210 (253)
T ss_dssp HHHHHHHHHHCCCSSSCC-HHHHHHHHHTSTTH--HHHHTTSTTHHHHHHHHHHHTCCGGGGGGCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccch-HHHHHHHhcCCcch--HHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHH
Confidence 999999999877 8 99999999975211 122334679999999995 22 2378999999999
Q ss_pred HHHHHhHHHHHhcCC
Q psy8556 259 TRQLAKQQLTWLRNM 273 (298)
Q Consensus 259 tr~yakrQ~twfr~~ 273 (298)
|++|||||.+||.+|
T Consensus 211 ~~~~a~~q~~~~~~w 225 (253)
T 2ze6_A 211 YLEHALSQERDFPQW 225 (253)
T ss_dssp HHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999777554
No 8
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=99.14 E-value=7.1e-12 Score=108.69 Aligned_cols=79 Identities=24% Similarity=0.284 Sum_probs=68.7
Q ss_pred cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEecccc---CCCCCCCHHHHccccccc----cccc
Q psy8556 28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMD---IGTNKPSIIEREITPHHL----IDII 100 (298)
Q Consensus 28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~---i~t~kp~~~e~~~v~~~l----~~~~ 100 (298)
+++..+...+..|+|+||||||||||+..|++..+ ++|+.|+.|||++.+ ++|++|+ ++|++ ++++
T Consensus 25 lHa~~v~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~~~~~~liGtak~~------i~h~lEiRGigii 97 (205)
T 2qmh_A 25 MHGVLVDIYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQQDEQTIVGAAPPI------LSHLLEIRGLGII 97 (205)
T ss_dssp EESEEEEETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEECSTTCEEEECCSS------STTEEEETTTEEE
T ss_pred eeEEEEEECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhheeecCCceEEEECCcc------ccccccccceeEE
Confidence 55555667788999999999999999999999876 999999999999998 8999886 89998 8888
Q ss_pred CcCccchHHHHHH
Q psy8556 101 EPTKSYSVIQFCE 113 (298)
Q Consensus 101 ~~~e~~s~~~f~~ 113 (298)
++.+.|++..|..
T Consensus 98 d~~~~f~~~~f~~ 110 (205)
T 2qmh_A 98 DVMNLFGAGAVRE 110 (205)
T ss_dssp EHHHHHCTTSBCS
T ss_pred cccccCCHHHHHh
Confidence 8888888877754
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.98 E-value=6.2e-10 Score=104.73 Aligned_cols=143 Identities=15% Similarity=0.135 Sum_probs=83.8
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e 88 (298)
..++.|+++...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++....+....
T Consensus 19 ~l~~~y~g~~~vl~~vsl-----~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 19 GVEKIYPGGARSVRGVSF-----QIREGEMVGLLGPSGSGKTTILRLIAGLER-----PTKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp EEEECCTTSTTCEEEEEE-----EEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTCCGGGSS
T ss_pred EEEEEEcCCCEEEeeeEE-----EECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECCcCChhhCc
Confidence 356778544456666666 124567899999999999999999999877 899999 678777543322222
Q ss_pred HcccccccccccCcCccchHHHHHHH-----------HHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc-
Q psy8556 89 REITPHHLIDIIEPTKSYSVIQFCED-----------ALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG- 145 (298)
Q Consensus 89 ~~~v~~~l~~~~~~~e~~s~~~f~~~-----------~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~- 145 (298)
+..+++.. .....+++.+.... ..+.+.++.+ ...+--++||.. ...++++.+
T Consensus 89 ig~v~Q~~----~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P 164 (355)
T 1z47_A 89 VGLVFQNY----ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRP 164 (355)
T ss_dssp EEEECGGG----CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEecCc----ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 23333321 11222333222111 1111222211 112224788877 567888865
Q ss_pred ---CCCCCCC--CHHHHHHHHHHHHh
Q psy8556 146 ---INKLPPA--NLKLRTKFNIDINK 166 (298)
Q Consensus 146 ---~~~~p~~--d~~lr~~l~~~~~~ 166 (298)
+.|.|.+ |+..+..+.+.+.+
T Consensus 165 ~lLLLDEP~s~LD~~~r~~l~~~l~~ 190 (355)
T 1z47_A 165 QVLLFDEPFAAIDTQIRRELRTFVRQ 190 (355)
T ss_dssp SEEEEESTTCCSSHHHHHHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 4466754 88888887766543
No 10
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.98 E-value=1.3e-11 Score=107.11 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=69.6
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHH-
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQF- 111 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f- 111 (298)
|.++|++++|+||||||||||++.|++.++.. +....+.+|.+|...+..++.+++++...+...+....|
T Consensus 4 m~~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~--------~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~l 75 (208)
T 3tau_A 4 MTERGLLIVLSGPSGVGKGTVREAVFKDPETS--------FDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKML 75 (208)
T ss_dssp -CCCCCEEEEECCTTSCHHHHHHHHHHSTTCC--------CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred ccCCCcEEEEECcCCCCHHHHHHHHHhhCCCc--------EEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEE
Confidence 45678999999999999999999999987621 233445567777777777777766543221111100011
Q ss_pred ---------HHHHHHhhHHHhhcCCceEE---EchhHHHHHHHHcc--CCCCCCCCHHHHHHH
Q psy8556 112 ---------CEDALFSIKNILKKKKLPLL---VGGTMLYFKALRDG--INKLPPANLKLRTKF 160 (298)
Q Consensus 112 ---------~~~~~~~i~~i~~~~~~~Il---vGGt~~y~~~ll~~--~~~~p~~d~~lr~~l 160 (298)
+......+.++...|+.+|+ +.|...+.+..... ++..|++...+++|+
T Consensus 76 e~~~~~~~~yg~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl 138 (208)
T 3tau_A 76 EYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRI 138 (208)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC-
T ss_pred EEEEEccccCCCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHH
Confidence 11112345677788998888 55655444433322 122255444444443
No 11
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.91 E-value=1.7e-09 Score=101.45 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=82.0
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e 88 (298)
..++.|++. .++++++ .-++|++++|+||||||||||++.|++... +++|+| +.|.++....+....
T Consensus 6 ~l~~~y~~~--~l~~vsl-----~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~~~~~~r~ 73 (348)
T 3d31_A 6 SLSRKWKNF--SLDNLSL-----KVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTDLSPEKHD 73 (348)
T ss_dssp EEEEECSSC--EEEEEEE-----EECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCHHHHT
T ss_pred EEEEEECCE--EEeeeEE-----EEcCCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCEECCCCchhhCc
Confidence 356778653 6666665 224567899999999999999999999877 899999 678777532222222
Q ss_pred HcccccccccccCcCccchHHHHHHHHH--------HhhHHHhh--------cCCceEEEchhH---HHHHHHHcc----
Q psy8556 89 REITPHHLIDIIEPTKSYSVIQFCEDAL--------FSIKNILK--------KKKLPLLVGGTM---LYFKALRDG---- 145 (298)
Q Consensus 89 ~~~v~~~l~~~~~~~e~~s~~~f~~~~~--------~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~---- 145 (298)
...+++.. .....+++.+...... +.+.++.+ ...+--++||-. ...++++.+
T Consensus 74 ig~v~Q~~----~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lL 149 (348)
T 3d31_A 74 IAFVYQNY----SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKIL 149 (348)
T ss_dssp CEEECTTC----CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred EEEEecCc----ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 33333321 1122233333221110 11122211 112224788877 466787765
Q ss_pred CCCCCC--CCHHHHHHHHHHHH
Q psy8556 146 INKLPP--ANLKLRTKFNIDIN 165 (298)
Q Consensus 146 ~~~~p~--~d~~lr~~l~~~~~ 165 (298)
+.|.|. -|+..+..+.+.+.
T Consensus 150 LLDEP~s~LD~~~~~~l~~~l~ 171 (348)
T 3d31_A 150 LLDEPLSALDPRTQENAREMLS 171 (348)
T ss_dssp EEESSSTTSCHHHHHHHHHHHH
T ss_pred EEECccccCCHHHHHHHHHHHH
Confidence 345665 48888887766654
No 12
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.91 E-value=1.2e-09 Score=99.43 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=48.3
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|+++...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 12 ~ls~~y~~~~~~L~~isl-----~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G~I~~~G~~i~ 73 (275)
T 3gfo_A 12 ELNYNYSDGTHALKGINM-----NIKRGEVTAILGGNGVGKSTLFQNFNGILK-----PSSGRILFDNKPID 73 (275)
T ss_dssp EEEEECTTSCEEEEEEEE-----EEETTSEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECC
T ss_pred EEEEEECCCCeEEEeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeEEEECCEECC
Confidence 457788766556777666 224467899999999999999999998876 899999 6887774
No 13
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.90 E-value=1.3e-09 Score=103.41 Aligned_cols=141 Identities=17% Similarity=0.173 Sum_probs=83.3
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e 88 (298)
..++.|++ ...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++....+....
T Consensus 8 ~l~~~yg~-~~~L~~vsl-----~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~~~~~~~~~r~ 76 (381)
T 3rlf_A 8 NVTKAWGE-VVVSKDINL-----DIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMNDTPPAERG 76 (381)
T ss_dssp EEEEEETT-EEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTCCGGGSC
T ss_pred eEEEEECC-EEEEeeeEE-----EECCCCEEEEEcCCCchHHHHHHHHHcCCC-----CCCeEEEECCEECCCCCHHHCC
Confidence 35677753 345566655 224577899999999999999999999887 899999 588877644433322
Q ss_pred HcccccccccccCcCccchHHHHHH-----------HHHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc-
Q psy8556 89 REITPHHLIDIIEPTKSYSVIQFCE-----------DALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG- 145 (298)
Q Consensus 89 ~~~v~~~l~~~~~~~e~~s~~~f~~-----------~~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~- 145 (298)
...+++.. .....+++.+... ...+.+.++.+ ...+--++||-. ...++++.+
T Consensus 77 ig~VfQ~~----~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P 152 (381)
T 3rlf_A 77 VGMVFQSY----ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (381)
T ss_dssp EEEECTTC----CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEecCC----cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCC
Confidence 33333321 1122233322211 01111222211 112224788876 567888865
Q ss_pred ---CCCCCCC--CHHHHHHHHHHHH
Q psy8556 146 ---INKLPPA--NLKLRTKFNIDIN 165 (298)
Q Consensus 146 ---~~~~p~~--d~~lr~~l~~~~~ 165 (298)
+.|.|.+ |+..+..+...+.
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~l~ 177 (381)
T 3rlf_A 153 SVFLLDEPLSNLDAALRVQMRIEIS 177 (381)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHH
Confidence 4466754 8888877766554
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.88 E-value=1.7e-09 Score=101.94 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=83.2
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e 88 (298)
..++.|++ ...+.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++....+....
T Consensus 8 ~l~~~y~~-~~vl~~vsl-----~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~~~~~r~ 76 (362)
T 2it1_A 8 NIVKKFGN-FTALNNINL-----KIKDGEFMALLGPSGSGKSTLLYTIAGIYK-----PTSGKIYFDEKDVTELPPKDRN 76 (362)
T ss_dssp EEEEESSS-SEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCGGGTT
T ss_pred eEEEEECC-EEEEEeeEE-----EECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCceEEEECCEECCcCCHhHCc
Confidence 35677743 345566655 224577899999999999999999999877 899999 678777543332222
Q ss_pred HcccccccccccCcCccchHHHHHHH-----------HHHhhHHHhh--------cCCceEEEchhH---HHHHHHHcc-
Q psy8556 89 REITPHHLIDIIEPTKSYSVIQFCED-----------ALFSIKNILK--------KKKLPLLVGGTM---LYFKALRDG- 145 (298)
Q Consensus 89 ~~~v~~~l~~~~~~~e~~s~~~f~~~-----------~~~~i~~i~~--------~~~~~IlvGGt~---~y~~~ll~~- 145 (298)
+..+++.. .....+++.+.... ..+.+.++.+ ...+--++||.. ...++++..
T Consensus 77 ig~v~Q~~----~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 152 (362)
T 2it1_A 77 VGLVFQNW----ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEP 152 (362)
T ss_dssp EEEECTTC----CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEecCc----ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 33333321 11222333322211 1111222221 112224788877 567888865
Q ss_pred ---CCCCCC--CCHHHHHHHHHHHHh
Q psy8556 146 ---INKLPP--ANLKLRTKFNIDINK 166 (298)
Q Consensus 146 ---~~~~p~--~d~~lr~~l~~~~~~ 166 (298)
+.|.|. -|+..+..+...+.+
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (362)
T 2it1_A 153 EVLLLDEPLSNLDALLRLEVRAELKR 178 (362)
T ss_dssp SEEEEESGGGGSCHHHHHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHH
Confidence 346664 488888887766543
No 15
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.87 E-value=1.8e-09 Score=101.59 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=45.2
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
..++.|++ ...++++++ .-.+|++++|+||||||||||+++|++... +++|+| +.|.++
T Consensus 9 ~ls~~y~~-~~~L~~vsl-----~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~i 68 (359)
T 3fvq_A 9 HLSKSFQN-TPVLNDISL-----SLDPGEILFIIGASGCGKTTLLRCLAGFEQ-----PDSGEISLSGKTI 68 (359)
T ss_dssp EEEEEETT-EEEEEEEEE-----EECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEE
T ss_pred eEEEEECC-EEEEEeeEE-----EEcCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEEC
Confidence 34667743 345566555 224577899999999999999999999887 889999 577776
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.87 E-value=1.8e-09 Score=94.99 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=45.5
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.++.|++ ...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 10 l~~~y~~-~~~l~~vsl-----~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 70 (224)
T 2pcj_A 10 IKKVIRG-YEILKGISL-----SVKKGEFVSIIGASGSGKSTLLYILGLLDA-----PTEGKVFLEGKEVDY 70 (224)
T ss_dssp EEEEETT-EEEEEEEEE-----EEETTCEEEEEECTTSCHHHHHHHHTTSSC-----CSEEEEEETTEECCS
T ss_pred EEEEECC-EeeEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCC
Confidence 4566754 345666665 224467899999999999999999998876 889999 67877653
No 17
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.87 E-value=5.9e-09 Score=94.21 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=45.9
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
.+..|+ +...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++...
T Consensus 17 l~~~~~-~~~vL~~vsl-----~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~~ 78 (266)
T 4g1u_C 17 LHYHVQ-QQALINDVSL-----HIASGEMVAIIGPNGAGKSTLLRLLTGYLS-----PSHGECHLLGQNLNSW 78 (266)
T ss_dssp EEEEET-TEEEEEEEEE-----EEETTCEEEEECCTTSCHHHHHHHHTSSSC-----CSSCEEEETTEETTTS
T ss_pred EEEEeC-CeeEEEeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCcC
Confidence 345554 3445666655 224567899999999999999999998876 899999 688887643
No 18
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.84 E-value=2.3e-09 Score=101.42 Aligned_cols=142 Identities=13% Similarity=0.116 Sum_probs=81.2
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC------C
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT------N 82 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t------~ 82 (298)
..++.|++ ...+.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.. .
T Consensus 8 ~l~~~y~~-~~vl~~vsl-----~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~~~~~~~ 76 (372)
T 1g29_1 8 DVWKVFGE-VTAVREMSL-----EVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVADPEKGIFV 76 (372)
T ss_dssp EEEEEETT-EEEEEEEEE-----EEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEEGGGTEEC
T ss_pred eEEEEECC-EEEEeeeEE-----EEcCCCEEEEECCCCcHHHHHHHHHHcCCC-----CCccEEEECCEECccccccccC
Confidence 34667743 345566655 124567899999999999999999999877 889998 57766643 1
Q ss_pred CCCHHHHcccccccccccCcCccchHHHHHHH-----------HHHhhHHHhh--------cCCceEEEchhH---HHHH
Q psy8556 83 KPSIIEREITPHHLIDIIEPTKSYSVIQFCED-----------ALFSIKNILK--------KKKLPLLVGGTM---LYFK 140 (298)
Q Consensus 83 kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~-----------~~~~i~~i~~--------~~~~~IlvGGt~---~y~~ 140 (298)
.+....+..+++.. .....+++.+.... ..+.+.++.+ ...+--++||.. ...+
T Consensus 77 ~~~~r~ig~v~Q~~----~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 152 (372)
T 1g29_1 77 PPKDRDIAMVFQSY----ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152 (372)
T ss_dssp CGGGSSEEEECSCC----CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred CHhHCCEEEEeCCC----ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHH
Confidence 22111222333321 11122333222111 0111111111 122234788877 5678
Q ss_pred HHHcc----CCCCCCC--CHHHHHHHHHHHHh
Q psy8556 141 ALRDG----INKLPPA--NLKLRTKFNIDINK 166 (298)
Q Consensus 141 ~ll~~----~~~~p~~--d~~lr~~l~~~~~~ 166 (298)
+++.. +.|.|.+ |+..+..+.+.+.+
T Consensus 153 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 184 (372)
T 1g29_1 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184 (372)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence 88866 4466754 88888887766543
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.84 E-value=3.3e-09 Score=100.02 Aligned_cols=142 Identities=13% Similarity=0.068 Sum_probs=82.5
Q ss_pred hhcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCC
Q psy8556 10 RDTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPS 85 (298)
Q Consensus 10 ~~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~ 85 (298)
..+++|+.+. ..++++++ .-++|++++|+||||||||||+++|++.+. +++|+| +.|.++....+.
T Consensus 29 ~ls~~y~~~~~~~~aL~~vsl-----~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-----p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 29 NITKVFHQGTRTIQALNNVSL-----HVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp EEEEEEECSSSEEEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECSSCCHH
T ss_pred eEEEEeCCCCCCeEEEEeeEE-----EEcCCCEEEEEcCCCchHHHHHHHHhcCCC-----CCceEEEECCEECCcCCHH
Confidence 4567786542 34555555 225577999999999999999999999877 899999 688888654332
Q ss_pred HH-----HHcccccccccccCcCccchHHHHHHH-----------HHHhhHHHhh-------cCC-ceEEEchhH---HH
Q psy8556 86 II-----EREITPHHLIDIIEPTKSYSVIQFCED-----------ALFSIKNILK-------KKK-LPLLVGGTM---LY 138 (298)
Q Consensus 86 ~~-----e~~~v~~~l~~~~~~~e~~s~~~f~~~-----------~~~~i~~i~~-------~~~-~~IlvGGt~---~y 138 (298)
.. .+..++++. .....+++.+.... ..+.+.++++ ..+ +--++||.. ..
T Consensus 99 ~~~~~r~~Ig~v~Q~~----~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 99 ELTKARRQIGMIFQHF----NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp HHHHHHTTEEEECSSC----CCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHH
T ss_pred HHHHHhCcEEEEeCCC----ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 11 122233331 22223343332211 1111222211 112 224788876 46
Q ss_pred HHHHHcc----CCCCCCC--CHHHHHHHHHHHH
Q psy8556 139 FKALRDG----INKLPPA--NLKLRTKFNIDIN 165 (298)
Q Consensus 139 ~~~ll~~----~~~~p~~--d~~lr~~l~~~~~ 165 (298)
.+|++.+ +.|.|.+ |+..++.+.+.+.
T Consensus 175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~ 207 (366)
T 3tui_C 175 ARALASNPKVLLCDQATSALDPATTRSILELLK 207 (366)
T ss_dssp HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHH
Confidence 6887765 4466754 7777777655543
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.82 E-value=6.8e-09 Score=97.78 Aligned_cols=142 Identities=17% Similarity=0.179 Sum_probs=82.0
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e 88 (298)
..++.|++ ...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++....+....
T Consensus 8 ~l~~~y~~-~~vl~~vsl-----~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~~~~~r~ 76 (359)
T 2yyz_A 8 NLKKYFGK-VKAVDGVSF-----EVKDGEFVALLGPSGCGKTTTLLMLAGIYK-----PTSGEIYFDDVLVNDIPPKYRE 76 (359)
T ss_dssp EEEEEETT-EEEEEEEEE-----EECTTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCGGGTT
T ss_pred EEEEEECC-EEEEeeeEE-----EEcCCCEEEEEcCCCchHHHHHHHHHCCCC-----CCccEEEECCEECCCCChhhCc
Confidence 34667743 345555555 224577899999999999999999999877 899999 678777543332222
Q ss_pred HcccccccccccCcCccchHHHHHH---------------HHHHhhHHH----hhcCCceEEEchhH---HHHHHHHcc-
Q psy8556 89 REITPHHLIDIIEPTKSYSVIQFCE---------------DALFSIKNI----LKKKKLPLLVGGTM---LYFKALRDG- 145 (298)
Q Consensus 89 ~~~v~~~l~~~~~~~e~~s~~~f~~---------------~~~~~i~~i----~~~~~~~IlvGGt~---~y~~~ll~~- 145 (298)
...+++.. .....+++.+... .+.+.++.. .....+--++||.. ...++++.+
T Consensus 77 ig~v~Q~~----~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P 152 (359)
T 2yyz_A 77 VGMVFQNY----ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP 152 (359)
T ss_dssp EEEECSSC----CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEecCc----ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 33333321 1112222222211 111112111 01112234788877 467888865
Q ss_pred ---CCCCCCC--CHHHHHHHHHHHHh
Q psy8556 146 ---INKLPPA--NLKLRTKFNIDINK 166 (298)
Q Consensus 146 ---~~~~p~~--d~~lr~~l~~~~~~ 166 (298)
+.|.|.+ |+..+..+.+.+.+
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (359)
T 2yyz_A 153 KVLLFDEPLSNLDANLRMIMRAEIKH 178 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHH
Confidence 4466754 88888887766543
No 21
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.81 E-value=1.4e-08 Score=91.74 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=44.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 30 l~~~y~~-~~vL~~vsl-----~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~ 89 (263)
T 2olj_A 30 LKKSFGS-LEVLKGINV-----HIREGEVVVVIGPSGSGKSTFLRCLNLLED-----FDEGEIIIDGINLK 89 (263)
T ss_dssp EEEEETT-EEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEESS
T ss_pred EEEEECC-EEEEEeeEE-----EEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEECC
Confidence 4556643 345555554 224577999999999999999999998876 889999 6887764
No 22
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.79 E-value=1.1e-08 Score=87.28 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=25.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
++|++++|+||||||||||++.|++.++
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999999999875
No 23
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.79 E-value=1.3e-08 Score=90.64 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=42.1
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.++.|++ .++++++ . -++ ++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 7 l~~~y~~---~l~~isl---~--i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 7 AEKRLGN---FRLNVDF---E--MGR-DYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADIT 63 (240)
T ss_dssp EEEEETT---EEEEEEE---E--ECS-SEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECT
T ss_pred EEEEeCC---EEeeeEE---E--ECC-EEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence 4566743 2455544 1 234 6899999999999999999999876 889999 6777764
No 24
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.79 E-value=2.3e-09 Score=100.82 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=45.4
Q ss_pred hhcccCchhhh--hhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQ--LTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~--~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..++.|++ .. .++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 8 ~l~~~y~~-~~~~vl~~vsl-----~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~ 70 (353)
T 1oxx_K 8 NVSKVFKK-GKVVALDNVNI-----NIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVA 70 (353)
T ss_dssp EEEEEEGG-GTEEEEEEEEE-----EECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEE
T ss_pred eEEEEECC-EeeeeEeceEE-----EECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECc
Confidence 35677754 33 5666655 224567899999999999999999999877 889998 5776664
No 25
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.78 E-value=1e-08 Score=96.96 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=81.6
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCHHH
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSIIE 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~~e 88 (298)
..++.|++ ...+.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++....+....
T Consensus 16 ~l~~~y~~-~~vl~~vsl-----~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~~~~~r~ 84 (372)
T 1v43_A 16 NLTKRFGN-FTAVNKLNL-----TIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTYLPPKDRN 84 (372)
T ss_dssp EEEEEETT-EEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTSCGGGGT
T ss_pred EEEEEECC-EEEEeeeEE-----EECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCCCChhhCc
Confidence 35667743 345556555 224577899999999999999999999877 899999 678777543332222
Q ss_pred Hcccccc--cccccCcCccchH---------HHHHHHHHHhhHHH----hhcCCceEEEchhH---HHHHHHHcc----C
Q psy8556 89 REITPHH--LIDIIEPTKSYSV---------IQFCEDALFSIKNI----LKKKKLPLLVGGTM---LYFKALRDG----I 146 (298)
Q Consensus 89 ~~~v~~~--l~~~~~~~e~~s~---------~~f~~~~~~~i~~i----~~~~~~~IlvGGt~---~y~~~ll~~----~ 146 (298)
...+++. ++..++..+++.. .+..+.+.+.++.. .....+--++||.. ...++++.. +
T Consensus 85 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 164 (372)
T 1v43_A 85 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL 164 (372)
T ss_dssp EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3333332 1111121121110 11111111222111 01112234889976 467888865 4
Q ss_pred CCCCCC--CHHHHHHHHHHHHh
Q psy8556 147 NKLPPA--NLKLRTKFNIDINK 166 (298)
Q Consensus 147 ~~~p~~--d~~lr~~l~~~~~~ 166 (298)
.|.|.+ |+..+..+...+.+
T Consensus 165 LDEP~s~LD~~~r~~l~~~l~~ 186 (372)
T 1v43_A 165 MDEPLSNLDAKLRVAMRAEIKK 186 (372)
T ss_dssp EESTTTTSCHHHHHHHHHHHHH
T ss_pred EcCCCccCCHHHHHHHHHHHHH
Confidence 466754 88888887766543
No 26
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.77 E-value=2.3e-08 Score=89.83 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=45.0
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.++.|++ ...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 21 l~~~y~~-~~vl~~vsl-----~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 21 LRKRIGK-KEILKGISF-----EIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVV 80 (256)
T ss_dssp EEEEETT-EEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETT
T ss_pred EEEEECC-EEEEEeeEE-----EEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence 4566743 345555555 224577899999999999999999998876 889999 6777765
No 27
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.75 E-value=1.2e-09 Score=94.73 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=60.6
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHH-
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFC- 112 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~- 112 (298)
..+|++++|+||||||||||++.|++.++.. +....+.+|.+|...+..++.+++++...+...+....|.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~--------~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle 87 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEK--------FVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLE 87 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCTTT--------EECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEE
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCCcc--------EEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhh
Confidence 3578899999999999999999999887522 2223445677888777888888766543222111111111
Q ss_pred ---------HHHHHhhHHHhhcCCceEEEc
Q psy8556 113 ---------EDALFSIKNILKKKKLPLLVG 133 (298)
Q Consensus 113 ---------~~~~~~i~~i~~~~~~~IlvG 133 (298)
......+.++.+.|+.+|+..
T Consensus 88 ~~~~~~n~YGt~~~~v~~~l~~G~~vildi 117 (197)
T 3ney_A 88 FGSYQGNMFGTKFETVHQIHKQNKIAILDI 117 (197)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred hhhhhceecccchhhHHHHHhcCCeEEEEE
Confidence 112345677888899888754
No 28
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.73 E-value=5.3e-09 Score=92.70 Aligned_cols=62 Identities=19% Similarity=0.103 Sum_probs=47.3
Q ss_pred hcccCchhh---hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 11 DTETDPQQR---QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 11 ~~~~~~~~~---~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
.+.+|+.+. ..++++++ .-.+|++++|+||||||||||++.|++.+. +++|+| +.|.++...
T Consensus 7 l~~~y~~~~~~~~~L~~isl-----~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~~ 72 (235)
T 3tif_A 7 VTKTYKMGEEIIYALKNVNL-----NIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDL 72 (235)
T ss_dssp EEEEEEETTEEEEEEEEEEE-----EECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTC
T ss_pred EEEEeCCCCcceeeEEeeeE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEEcccC
Confidence 466776543 35666655 224577899999999999999999998877 899999 688777543
No 29
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.72 E-value=1.6e-08 Score=90.44 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=44.5
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|++ ...++++++ .-++|++++|+||||||||||++.|++... +.+++|+| +.|.++..
T Consensus 9 l~~~y~~-~~vl~~vsl-----~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~p~~G~I~~~g~~~~~ 71 (250)
T 2d2e_A 9 LWASIDG-ETILKGVNL-----VVPKGEVHALMGPNGAGKSTLGKILAGDPE---YTVERGEILLDGENILE 71 (250)
T ss_dssp EEEEETT-EEEEEEEEE-----EEETTCEEEEECSTTSSHHHHHHHHHTCTT---CEEEEEEEEETTEECTT
T ss_pred EEEEECC-EEEEeceEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCceEEEECCEECCC
Confidence 4566753 445666655 224567899999999999999999998611 23788998 67877653
No 30
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.71 E-value=7.2e-09 Score=88.91 Aligned_cols=87 Identities=20% Similarity=0.192 Sum_probs=57.5
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHH--------
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQ-------- 110 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~-------- 110 (298)
.|+|+||||||||||++.|...++.. +....+.+|..|.+.|..+..||+++.-.+......+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~--------~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~ 74 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDS--------FGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFS 74 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTT--------EEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCC--------eEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEc
Confidence 48899999999999999998876521 32345567888889999999998876433221111111
Q ss_pred --HHHHHHHhhHHHhhcCCceEEEc
Q psy8556 111 --FCEDALFSIKNILKKKKLPLLVG 133 (298)
Q Consensus 111 --f~~~~~~~i~~i~~~~~~~IlvG 133 (298)
++......+...+..|+.+|+..
T Consensus 75 g~~YGt~~~~v~~~l~~g~~vil~i 99 (186)
T 1ex7_A 75 GNYYGSTVASVKQVSKSGKTCILDI 99 (186)
T ss_dssp TEEEEEEHHHHHHHHHHTSEEEEEC
T ss_pred CceeeeecceeeehhhCCCEEEecC
Confidence 11122345666777788877754
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.68 E-value=6.7e-09 Score=92.42 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=46.7
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
.+..|+++...+.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 7 l~~~y~~~~~vl~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 68 (243)
T 1mv5_A 7 VDFAYDDSEQILRDISF-----EAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDN 68 (243)
T ss_dssp EEECSSSSSCSEEEEEE-----EECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTT
T ss_pred EEEEeCCCCceEEEeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhh
Confidence 46677544556666665 224577899999999999999999998876 889999 67777643
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.67 E-value=6.9e-09 Score=90.89 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=44.0
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
.+..|++ ..+.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++
T Consensus 16 ls~~y~~--~il~~vsl-----~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 16 LSVGYDK--PVLERITM-----TIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEESSS--EEEEEEEE-----EEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEG
T ss_pred EEEEeCC--eEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEh
Confidence 4667765 56666666 123466899999999999999999998876 889999 577665
No 33
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.66 E-value=9e-09 Score=91.46 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=45.7
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
..+..|++ ...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 11 ~l~~~y~~-~~vl~~vsl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 11 SLHVYYGA-IHAIKGIDL-----KVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp EEEEEETT-EEEEEEEEE-----EEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred eEEEEECC-eeEEeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence 34566754 345566555 224567899999999999999999998876 889999 67877653
No 34
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.65 E-value=9.7e-09 Score=94.72 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=46.1
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++..||++...+.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 59 vs~~y~~~~~vL~~isl-----~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~G~~i~~ 120 (306)
T 3nh6_A 59 VHFSYADGRETLQDVSF-----TVMPGQTLALVGPSGAGKSTILRLLFRFYD-----ISSGCIRIDGQDISQ 120 (306)
T ss_dssp EEEESSTTCEEEEEEEE-----EECTTCEEEEESSSCHHHHHHHHHHTTSSC-----CSEEEEEETTEETTS
T ss_pred EEEEcCCCCceeeeeeE-----EEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCcEEEECCEEccc
Confidence 34456544445555544 225677899999999999999999998887 889999 68888764
No 35
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.64 E-value=1e-08 Score=92.08 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=45.3
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|++ ...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 12 ~l~~~y~~-~~vl~~vsl-----~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~ 72 (257)
T 1g6h_A 12 NIVKYFGE-FKALDGVSI-----SVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDIT 72 (257)
T ss_dssp EEEEEETT-EEEEEEECC-----EEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECT
T ss_pred eeEEEECC-EeeEeeeEE-----EEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECC
Confidence 34566743 345666655 224567899999999999999999998876 889999 6787765
No 36
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.62 E-value=1.3e-09 Score=95.50 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=18.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHH-hhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKIS-EYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La-~~l~ 62 (298)
++|++++|+||||||||||++.|+ +.++
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 678899999999999999999999 8765
No 37
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.62 E-value=5.7e-09 Score=88.16 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=35.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLI 97 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~ 97 (298)
.+|++++|+||||||||||++.|++.++.. ++..+..+|..|...+..++.++++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--------~~~~i~~ttr~~~~ge~~g~~~~~~ 57 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--------FAYPIPHTTRPPKKDEENGKNYYFV 57 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--------EECCCCEECSCC---CCBTTTBEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--------EEEeeeccCCCCCccccCCCeeEEe
Confidence 457899999999999999999999887511 1112333455565555555555543
No 38
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.61 E-value=1e-08 Score=91.61 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=48.0
Q ss_pred hhhcccCch-hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 9 DRDTETDPQ-QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 9 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
...+..|++ +...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 11 ~~l~~~y~~~~~~vl~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~~~~ 75 (247)
T 2ff7_A 11 RNIRFRYKPDSPVILDNINL-----SIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLAL 75 (247)
T ss_dssp EEEEEESSTTSCEEEEEEEE-----EEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTT
T ss_pred EEEEEEeCCCCcceeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhh
Confidence 345778853 4556666666 224567899999999999999999998876 889999 68877653
No 39
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.56 E-value=5.2e-08 Score=87.87 Aligned_cols=137 Identities=22% Similarity=0.125 Sum_probs=74.9
Q ss_pred hcccCchh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCCCCH
Q psy8556 11 DTETDPQQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNKPSI 86 (298)
Q Consensus 11 ~~~~~~~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~kp~~ 86 (298)
.+..|+++ ...+.++++ .-+ |++++|+||||||||||++.|++.+ +++|+| +.|.++... ...
T Consensus 7 l~~~y~~~~~~~~il~~vsl-----~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~------p~~G~I~~~g~~~~~~-~~~ 73 (263)
T 2pjz_A 7 VGITLSGKGYERFSLENINL-----EVN-GEKVIILGPNGSGKTTLLRAISGLL------PYSGNIFINGMEVRKI-RNY 73 (263)
T ss_dssp EEEEEEEETTEEEEEEEEEE-----EEC-SSEEEEECCTTSSHHHHHHHHTTSS------CCEEEEEETTEEGGGC-SCC
T ss_pred EEEEeCCCCccceeEEeeeE-----EEC-CEEEEEECCCCCCHHHHHHHHhCCC------CCCcEEEECCEECcch-HHh
Confidence 45667542 345666555 224 5689999999999999999998653 578888 566655321 111
Q ss_pred HHHc-ccccccccccCcCccchHHHHHHH-----------HHHhhHHH--h---hcCCceEEEchhH---HHHHHHHcc-
Q psy8556 87 IERE-ITPHHLIDIIEPTKSYSVIQFCED-----------ALFSIKNI--L---KKKKLPLLVGGTM---LYFKALRDG- 145 (298)
Q Consensus 87 ~e~~-~v~~~l~~~~~~~e~~s~~~f~~~-----------~~~~i~~i--~---~~~~~~IlvGGt~---~y~~~ll~~- 145 (298)
.... .+++.. .. .+++.+.... +.+.++.. . ....+--++||.. ...++++.+
T Consensus 74 ~~i~~~v~Q~~----~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 74 IRYSTNLPEAY----EI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp TTEEECCGGGS----CT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred hheEEEeCCCC----cc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 1222 333321 11 2333322211 11122111 0 0111224678876 466888865
Q ss_pred ---CCCCCCC--CHHHHHHHHHHHHh
Q psy8556 146 ---INKLPPA--NLKLRTKFNIDINK 166 (298)
Q Consensus 146 ---~~~~p~~--d~~lr~~l~~~~~~ 166 (298)
+.|.|.+ |+..++.+.+.+.+
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~ 173 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKE 173 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred CEEEEECCccccCHHHHHHHHHHHHH
Confidence 3466754 78777777665544
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.56 E-value=1.6e-07 Score=93.51 Aligned_cols=42 Identities=26% Similarity=0.410 Sum_probs=36.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~~~~ 409 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYD-----VDSGSICLDGHDVRD 409 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEhhh
Confidence 5678999999999999999999998877 889999 68877653
No 41
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.56 E-value=1.7e-08 Score=91.40 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=45.2
Q ss_pred hcccCchh--hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQ--RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~--~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+++ ...+.++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 22 l~~~y~~~~~~~vl~~vsl-----~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 22 VSFAYPNHPNVQVLQGLTF-----TLYPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEPLV 84 (271)
T ss_dssp EEECCTTCTTSCCEEEEEE-----EECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG
T ss_pred EEEEeCCCCCceeeEeeEE-----EECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEcc
Confidence 45667642 345555555 225577899999999999999999998876 889999 6777664
No 42
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.54 E-value=2e-08 Score=91.41 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=44.8
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 27 l~~~y~~-~~vL~~isl-----~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~ 86 (279)
T 2ihy_A 27 IGRMKQG-KTILKKISW-----QIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGKMPG 86 (279)
T ss_dssp EEEEETT-EEEEEEEEE-----EEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTBCCC
T ss_pred EEEEECC-EEEEEeeeE-----EEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCeEEEECCEEcc
Confidence 4566754 345666655 224567899999999999999999998877 889999 6777764
No 43
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.54 E-value=1.7e-08 Score=91.05 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=44.5
Q ss_pred hcccCc-hh---hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDP-QQ---RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~-~~---~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+ ++ ...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 8 l~~~y~~~~~~~~~vl~~vsl-----~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 8 VSHIFHRGTPLEKKALENVSL-----VINEGECLLVAGNTGSGKSTLLQIVAGLIE-----PTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEESTTSTTCEEEEEEEEE-----EECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECC
T ss_pred EEEEecCCCccccceeeeeEE-----EEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEECc
Confidence 456675 22 345666555 224577899999999999999999998876 889998 5776653
No 44
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.53 E-value=2.4e-08 Score=88.03 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=41.5
Q ss_pred hhcccCch-hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 10 RDTETDPQ-QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 10 ~~~~~~~~-~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
..+..|+. +...++++++ .-++|++++|+||||||||||++.|++.+. +++|+|+
T Consensus 11 ~l~~~y~~~~~~il~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~ 66 (229)
T 2pze_A 11 NVTAFWEEGGTPVLKDINF-----KIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIK 66 (229)
T ss_dssp EEEECSSTTSCCSEEEEEE-----EEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEE
T ss_pred EEEEEeCCCCceeeeeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEEE
Confidence 34667763 3456666665 124567899999999999999999998876 7788883
No 45
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.52 E-value=1.5e-07 Score=93.83 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=36.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~~ 409 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYD-----IDEGHILMDGHDLRE 409 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTC-----CSEEEEEETTEETTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC-----CCCCeEEECCEEccc
Confidence 5678999999999999999999999887 889999 68877753
No 46
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.51 E-value=4.6e-08 Score=88.09 Aligned_cols=59 Identities=14% Similarity=0.074 Sum_probs=45.0
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|++ ...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++.
T Consensus 12 l~~~y~~-~~vl~~vsl-----~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 12 LHKRYGG-HEVLKGVSL-----QARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEETT-EEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECC
T ss_pred EEEEECC-EEEEEeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcc
Confidence 4566743 345666555 224577899999999999999999998876 889999 6787764
No 47
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.50 E-value=2.3e-08 Score=88.68 Aligned_cols=57 Identities=18% Similarity=0.064 Sum_probs=41.8
Q ss_pred hhcccCch-hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-ecc
Q psy8556 10 RDTETDPQ-QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCD 76 (298)
Q Consensus 10 ~~~~~~~~-~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g 76 (298)
..+..|+. +...++++++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|
T Consensus 8 ~l~~~y~~~~~~vl~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g 66 (237)
T 2cbz_A 8 NATFTWARSDPPTLNGITF-----SIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVAIKG 66 (237)
T ss_dssp EEEEESCTTSCCSEEEEEE-----EECTTCEEEEECSTTSSHHHHHHHHTTCSE-----EEEEEEEECS
T ss_pred EEEEEeCCCCCceeeeeEE-----EECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECC
Confidence 34667764 3456666665 224577899999999999999999998775 677777 344
No 48
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.47 E-value=3.7e-08 Score=88.93 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=43.5
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+..|+ +...+.++++ .-++|++++|+||||||||||++.|++... ..+++|+| +.|.++.
T Consensus 26 l~~~y~-~~~vl~~vsl-----~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~---~~p~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 26 LHVSVE-DKAILRGLSL-----DVHPGEVHAIMGPNGSGKSTLSATLAGRED---YEVTGGTVEFKGKDLL 87 (267)
T ss_dssp EEEEET-TEEEEEEEEE-----EECTTCEEEEECCTTSSHHHHHHHHHTCTT---CEEEEEEEEETTEEGG
T ss_pred EEEEEC-CEEEEEeeEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECC
Confidence 456664 3345555555 224577899999999999999999998631 23678888 6777664
No 49
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.44 E-value=1.7e-07 Score=93.61 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=37.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~i~~ 410 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYD-----PASGTISLDGHDIRQ 410 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSC-----CSEEEEEETTEETTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCEEhhh
Confidence 6788999999999999999999998877 889999 68887753
No 50
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.44 E-value=4.6e-08 Score=87.64 Aligned_cols=54 Identities=15% Similarity=-0.005 Sum_probs=40.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
.+..|+.+...++++++ .-++|++++|+||||||||||++.|++.+. +++|+|+
T Consensus 10 l~~~y~~~~~vl~~isl-----~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~ 63 (253)
T 2nq2_C 10 LGFYYQAENFLFQQLNF-----DLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKIE 63 (253)
T ss_dssp EEEEETTTTEEEEEEEE-----EEETTCEEEEECCSSSSHHHHHHHHTTSSC-----CSEEEEE
T ss_pred EEEEeCCCCeEEEEEEE-----EECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEE
Confidence 45667523455666665 224567899999999999999999998876 7778775
No 51
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.42 E-value=1.4e-07 Score=84.42 Aligned_cols=40 Identities=13% Similarity=0.304 Sum_probs=34.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
.+|++++|+||||||||||++.|++.+. ++ |+| +.|.++.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQPLE 64 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEEGG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEECC
Confidence 4577899999999999999999998876 78 888 5776654
No 52
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.38 E-value=8.7e-08 Score=86.16 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=43.2
Q ss_pred hhcccCchh--hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 10 RDTETDPQQ--RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 10 ~~~~~~~~~--~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
..+..|++. ...++++++ .-++|++++|+||||||||||++.|++.+. + +|+| +.|.++.
T Consensus 22 ~l~~~y~~~~~~~vl~~vsl-----~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 22 DVNFSYPKQTNHRTLKSINF-----FIPSGTTCALVGHTGSGKSTIAKLLYRFYD-----A-EGDIKIGGKNVN 84 (260)
T ss_dssp EEEECCTTCCSSCSEEEEEE-----EECTTCEEEEECSTTSSHHHHHHHHTTSSC-----C-EEEEEETTEEGG
T ss_pred EEEEEeCCCCcCceeEeeEE-----EECCCCEEEEECCCCCCHHHHHHHHhccCC-----C-CeEEEECCEEhh
Confidence 346677653 245566555 224577899999999999999999998765 3 6888 5776654
No 53
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.38 E-value=2.2e-07 Score=77.98 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=31.2
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.++.|+|+||+||||||+++.|++.++..+++.|.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 46789999999999999999999999988887775
No 54
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.34 E-value=2.6e-07 Score=80.94 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=25.8
Q ss_pred cccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 30 TGKLLFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 30 ~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.-++.++|++++|+||||||||||++.|++.++
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 334557899999999999999999999999876
No 55
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.33 E-value=1e-07 Score=90.60 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=45.2
Q ss_pred hhcccCch-hhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 10 RDTETDPQ-QRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 10 ~~~~~~~~-~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
..++.|++ +...++++++ .-++|++++|+||||||||||++.|++.+. ++|+| +.|.++...
T Consensus 24 ~l~~~y~~~~~~~L~~vsl-----~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~~i~~~ 87 (390)
T 3gd7_A 24 DLTAKYTEGGNAILENISF-----SISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGVSWDSI 87 (390)
T ss_dssp EEEEESSSSSCCSEEEEEE-----EECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSCBTTSS
T ss_pred EEEEEecCCCeEEeeceeE-----EEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCEECCcC
Confidence 34677764 3455666655 224567899999999999999999998652 57888 578877643
No 56
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.32 E-value=2.2e-07 Score=80.94 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=25.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
++|++++|+||||||||||++.|++.++
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999999999874
No 57
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.32 E-value=2.1e-07 Score=79.83 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=31.2
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC--CeEeecCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP--CEIISIDS 70 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~--~~iis~Ds 70 (298)
+++|.+++|+||||||||||++.|++.++ ..+++.|.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~ 41 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDH 41 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCc
Confidence 46788999999999999999999999987 66777665
No 58
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.30 E-value=1.8e-07 Score=93.61 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=44.5
Q ss_pred cccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
+..|+++...++|+++ .-++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 361 ~~~y~~~~~~l~~isl-----~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~ 421 (598)
T 3qf4_B 361 WFSYDKKKPVLKDITF-----HIKPGQKVALVGPTGSGKTTIVNLLMRFYD-----VDRGQILVDGIDIRK 421 (598)
T ss_dssp ECCSSSSSCSCCSEEE-----ECCTTCEEEEECCTTSSTTHHHHHHTTSSC-----CSEEEEEETTEEGGG
T ss_pred EEECCCCCccccceEE-----EEcCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCCeEEEECCEEhhh
Confidence 3445443334444443 225678999999999999999999999887 889999 68887754
No 59
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.30 E-value=8.3e-07 Score=79.01 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=33.5
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
+++++.+|+|+||+||||||+++.|++.++... +|+|.+|
T Consensus 23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~ 62 (252)
T 4e22_A 23 MTAIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIY 62 (252)
T ss_dssp CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCcee
Confidence 346788999999999999999999998887554 5677776
No 60
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.25 E-value=6.9e-07 Score=74.37 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=30.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
++|++++|+||||||||||++.|++.++ ++|.| +.|.++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~------~~G~V~~~g~~i 70 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG------HQGNVKSPTYTL 70 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT------CCSCCCCCTTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhCC------CCCeEEECCEee
Confidence 5678999999999999999999998863 45666 345444
No 61
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.25 E-value=4.7e-07 Score=77.91 Aligned_cols=29 Identities=38% Similarity=0.470 Sum_probs=25.5
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
-++|++++|+||||||||||++.|++.++
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36688999999999999999999999885
No 62
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.24 E-value=4.9e-07 Score=97.96 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=44.7
Q ss_pred cCchhh--hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 14 TDPQQR--QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 14 ~~~~~~--~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
.||+.. ..++|+++ .=++|+.++|+||||||||||++.|.+.+. +++|+| ..|.++.+-
T Consensus 1085 ~Y~~~~~~~VL~~isl-----~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~i 1146 (1321)
T 4f4c_A 1085 AYPERPEIEILKGLSF-----SVEPGQTLALVGPSGCGKSTVVALLERFYD-----TLGGEIFIDGSEIKTL 1146 (1321)
T ss_dssp CCTTSCSSCSEEEEEE-----EECTTCEEEEECSTTSSTTSHHHHHTTSSC-----CSSSEEEETTEETTTB
T ss_pred eCCCCCCCccccceeE-----EECCCCEEEEECCCCChHHHHHHHHhcCcc-----CCCCEEEECCEEhhhC
Confidence 455432 34555554 124567899999999999999999999887 899999 689888743
No 63
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.23 E-value=6.5e-07 Score=76.52 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=29.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
++|++++|+||+||||||+++.|++.++...++.|
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d 61 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEAD 61 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEccc
Confidence 56889999999999999999999998875555444
No 64
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.23 E-value=3.9e-07 Score=83.27 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=31.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
++|++++|+||||||||||++.|++.+. +++|+|+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~ 96 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIK 96 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSC-----EEEEEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEE
Confidence 6788999999999999999999998876 6777774
No 65
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.22 E-value=3.9e-07 Score=78.44 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=26.6
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.++|++++|+||||||||||++.|++.++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46789999999999999999999999875
No 66
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.22 E-value=8.6e-07 Score=73.68 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=30.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.++.+++|+||+||||||+++.|++.++..+++.|.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCcc
Confidence 457899999999999999999999988766666554
No 67
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.20 E-value=5.9e-07 Score=75.95 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.8
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
|++++|+||||||||||++.|++.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999999875
No 68
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.20 E-value=7e-07 Score=73.89 Aligned_cols=33 Identities=24% Similarity=0.536 Sum_probs=28.9
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
+.+|+|+||+||||||+++.|++.++..+++.|
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d 36 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEecc
Confidence 568999999999999999999999987666554
No 69
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.19 E-value=3.4e-07 Score=91.18 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=36.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYD-----VTSGQILIDGHNIKD 407 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSC-----CSEEEEEETTEEGGG
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEEhhh
Confidence 5678999999999999999999998887 889999 68877753
No 70
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=7.2e-07 Score=76.15 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=31.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.++++|+|+||+||||||+++.|++.++..+++.|.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~ 58 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDW 58 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchH
Confidence 456789999999999999999999999888877764
No 71
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.17 E-value=6e-07 Score=89.97 Aligned_cols=52 Identities=10% Similarity=-0.019 Sum_probs=40.4
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
.+..|+...+.+..+. ...+|++++|+||||||||||++.|++.+. +++|.|
T Consensus 83 ~~~~Y~~~~~~l~~l~------~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i 134 (608)
T 3j16_B 83 VTHRYSANSFKLHRLP------TPRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRF 134 (608)
T ss_dssp EEEECSTTSCEEECCC------CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTT
T ss_pred eEEEECCCceeecCCC------CCCCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceE
Confidence 4667776665444444 346788999999999999999999999876 777765
No 72
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.17 E-value=1e-06 Score=74.03 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=25.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
++|++++|+||||||||||++.|++.++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~ 34 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPG 34 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccC
Confidence 4578999999999999999999998754
No 73
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.15 E-value=5.6e-07 Score=89.78 Aligned_cols=42 Identities=33% Similarity=0.382 Sum_probs=36.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLID-----PERGRVEVDELDVRT 409 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSC-----CSEEEEEESSSBGGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEECCEEccc
Confidence 5678999999999999999999998887 889999 68887754
No 74
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.14 E-value=1.1e-06 Score=75.01 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=32.1
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+..++.+|+|+|++||||||+++.|++.++..+++.|.
T Consensus 14 m~~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~ 51 (202)
T 3t61_A 14 VRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDA 51 (202)
T ss_dssp -CCCSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCc
Confidence 33456789999999999999999999999888887775
No 75
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.12 E-value=1e-06 Score=79.16 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=32.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC-CceE-eccccC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID-SALV-YCDMDI 79 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D-s~qv-y~g~~i 79 (298)
+++++++|+||||||||||++.|++.++ ++ +|.| +.|.++
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~-----~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPI 64 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH-----HHCCCEEEEEESSC
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC-----CCCCCEEEEcCCcc
Confidence 5688999999999999999999998865 55 6776 455444
No 76
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.10 E-value=4.7e-07 Score=78.71 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=28.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
++|++++|+||||||||||++.|++. . +++|+|
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I 52 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQV 52 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCee
Confidence 34789999999999999999999988 6 677777
No 77
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.10 E-value=1.6e-06 Score=76.56 Aligned_cols=28 Identities=43% Similarity=0.516 Sum_probs=25.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
++|.+|+|+||||||||||++.|++.++
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5678999999999999999999999875
No 78
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.09 E-value=1.5e-06 Score=75.12 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=30.8
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC 75 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~ 75 (298)
+.+|+|+||+||||||+++.|++.++...++ +|.+|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d--~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD--SGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc--Ccceee
Confidence 5689999999999999999999998876654 445664
No 79
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.09 E-value=1.2e-06 Score=80.51 Aligned_cols=33 Identities=21% Similarity=0.485 Sum_probs=28.7
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEII 66 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~ii 66 (298)
-++|++++|+||||||||||++.|++.+.|.|+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~ 155 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL 155 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEE
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCceEE
Confidence 367889999999999999999999998865554
No 80
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.08 E-value=1.6e-06 Score=79.64 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=34.3
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
..+|++++|+|||||||||+++.|++.+. +++|.| +.+.++
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDT 138 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeecc
Confidence 36789999999999999999999999875 677777 466554
No 81
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.07 E-value=2e-05 Score=69.89 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=26.7
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPC 63 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~ 63 (298)
..+|.+|+|+|++||||||+++.|++.++.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 355789999999999999999999999863
No 82
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.07 E-value=1.8e-06 Score=79.30 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=34.1
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
+|++++|+|||||||||+++.|++.+. +++|.| +.+.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-----~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-----NLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-----TTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEeecCC
Confidence 688999999999999999999999876 677777 5666654
No 83
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.06 E-value=2e-06 Score=73.55 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=32.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC-CCeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI-PCEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l-~~~iis~Ds 70 (298)
+++.+|+|+|++||||||+++.|++.+ +..+++.|.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~ 55 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDD 55 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCc
Confidence 557899999999999999999999988 678888886
No 84
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.06 E-value=3.4e-06 Score=91.40 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=38.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTNK 83 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~k 83 (298)
++|+.++|+||||||||||++.|.+.+. +++|+| ..|.++..-.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~-----~~~G~I~idG~~i~~~~ 486 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD-----VLKGKITIDGVDVRDIN 486 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC-----CSEEEEEETTEETTTSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc-----cccCcccCCCccchhcc
Confidence 5677899999999999999999999988 889999 5888876433
No 85
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.05 E-value=1.3e-06 Score=74.55 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=29.3
Q ss_pred ccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 29 RTGKLLFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 29 ~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+...+..+|.+|+|+|||||||||+++.|++.++
T Consensus 17 ~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 17 RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455567899999999999999999999999873
No 86
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.04 E-value=2.1e-06 Score=72.58 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=31.2
Q ss_pred cccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 32 KLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 32 ~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.+++++.+|+|+|++||||||+++.|++. +..+++.|.
T Consensus 3 ~~~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~ 40 (203)
T 1uf9_A 3 HEAKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDA 40 (203)
T ss_dssp ---CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHH
T ss_pred CcccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccH
Confidence 44566789999999999999999999998 777887775
No 87
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.04 E-value=2e-06 Score=85.06 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=30.7
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
+++|++++|+||||||||||++.|++.+. +++|.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i 56 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDP 56 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcc
Confidence 46788999999999999999999998876 777765
No 88
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.02 E-value=3.6e-06 Score=80.43 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=32.8
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
...++.+|+|+|++||||||+++.|+..++..+|+.|.
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~ 291 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDT 291 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccch
Confidence 34567899999999999999999999988877777765
No 89
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.01 E-value=2.5e-06 Score=78.25 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=26.1
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
..+|.+++|+||||||||||++.|++.++
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36789999999999999999999999764
No 90
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.00 E-value=2e-06 Score=73.66 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+|++++|+||||||||||++.|++.++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 578899999999999999999998764
No 91
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.99 E-value=3.4e-06 Score=71.08 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=32.0
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhh-CCCeEeecCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEY-IPCEIISIDS 70 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~-l~~~iis~Ds 70 (298)
.+++.+|+|+|++||||||+++.|+.. ++..+++.|.
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~ 44 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGK 44 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHH
Confidence 345778999999999999999999999 6878887764
No 92
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.99 E-value=1.9e-06 Score=76.97 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=38.3
Q ss_pred cccCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 12 TETDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+++|.++..++.++++ +..-. ++++|+|+|++||||||+++.|++.++..++..|.
T Consensus 25 ~~~~~~~~~~l~~~~~~i~~~l---~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~ 81 (250)
T 3nwj_A 25 HSPFDEEQQILKKKAEEVKPYL---NGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDT 81 (250)
T ss_dssp -------CHHHHHHHHTTHHHH---TTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred eEEecCcchhhhhhhhhhhhhc---CCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcH
Confidence 6677455678888877 33311 25679999999999999999999999877776553
No 93
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.99 E-value=3.6e-06 Score=69.11 Aligned_cols=33 Identities=36% Similarity=0.385 Sum_probs=29.0
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.+|+|+||+||||||+++.|++.++..+++.|.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 379999999999999999999998877776663
No 94
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.98 E-value=2.7e-06 Score=71.12 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=30.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
.+|.+|+|+|++||||||+++.|++.++..+++.|
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d 36 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTG 36 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 35778999999999999999999998887777655
No 95
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.98 E-value=2.3e-06 Score=89.67 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=38.9
Q ss_pred cccCchh-hhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec
Q psy8556 12 TETDPQQ-RQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC 75 (298)
Q Consensus 12 ~~~~~~~-~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~ 75 (298)
+..||++ ...+.++++ .-.+|++++|+||||||||||++.|++.+. +++|.|+.
T Consensus 678 s~~Y~g~~~~iL~dVSl-----~I~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~ 732 (986)
T 2iw3_A 678 EFQYPGTSKPQITDINF-----QCSLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYT 732 (986)
T ss_dssp EECCTTCSSCSEEEEEE-----EEETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEE
T ss_pred EEEeCCCCceeeeccEE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEE
Confidence 3455532 334444444 224567899999999999999999998876 88888854
No 96
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.98 E-value=1.3e-06 Score=79.68 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=30.7
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecCCceEec
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP-----CEIISIDSALVYC 75 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~Ds~qvy~ 75 (298)
+.++.+|+|.||+||||||+++.|+..++ ..+|+.|+ +|+
T Consensus 2 s~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~--~~r 46 (290)
T 1a7j_A 2 SKKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA--FHR 46 (290)
T ss_dssp CTTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG--GBS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecch--hhc
Confidence 45678999999999999999999998776 57888887 554
No 97
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.98 E-value=2.7e-06 Score=74.98 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=29.1
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
..++.+++|+|||||||||+++.|++.++... +++|++
T Consensus 24 ~~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i 61 (246)
T 2bbw_A 24 ASKLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHF 61 (246)
T ss_dssp --CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHH
Confidence 34678999999999999999999997765332 455556
No 98
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.97 E-value=4.5e-06 Score=73.93 Aligned_cols=40 Identities=40% Similarity=0.391 Sum_probs=32.4
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCe----------EeecCCceEec
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCE----------IISIDSALVYC 75 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~----------iis~Ds~qvy~ 75 (298)
+.++.+|+|+|++||||||+++.|+..++.. +++.|. +|+
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~--~~~ 68 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS--FYR 68 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG--GBC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc--ccc
Confidence 3456799999999999999999999988866 677776 555
No 99
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.97 E-value=3.3e-06 Score=79.35 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=34.1
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
.++|++++|+|||||||||+++.|++.+. +++|.| +.+.++
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~G~V~l~g~D~ 195 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDT 195 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcc-----ccCCEEEEecccc
Confidence 36789999999999999999999999875 667777 456554
No 100
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.96 E-value=4.3e-06 Score=81.46 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=33.7
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++++|+||||||||||+++|++.+. +++|.| +.|.++..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNTTEAG 69 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCTTSCS
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEEccc
Confidence 7999999999999999999999876 788888 57766653
No 101
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.96 E-value=3.2e-06 Score=78.50 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=34.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~ 80 (298)
++|.+++|+|||||||||+++.|++.+. +++|.| +.+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~-----~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK-----NHGFSVVIAASDTF 168 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCEEEEEeeccc
Confidence 5789999999999999999999998875 677777 4666654
No 102
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.96 E-value=3.8e-06 Score=71.88 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=26.1
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.-+|.+|+|+|||||||||+++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 35688999999999999999999998875
No 103
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.95 E-value=3.9e-06 Score=71.18 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=25.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
++|.+++|+|||||||||+++.|++.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999999999999999987
No 104
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.95 E-value=2.5e-06 Score=84.26 Aligned_cols=54 Identities=13% Similarity=0.098 Sum_probs=38.8
Q ss_pred hhhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
...++.|++....+.+++ .-.+|++++|+||||||||||++.|++.+. +++|.+
T Consensus 25 ~~ls~~yg~~~~~l~~vs------~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-----p~~G~~ 78 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP------VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-----PNLCGD 78 (538)
T ss_dssp CCEEEECSTTCCEEECCC------CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTT
T ss_pred cCcEEEECCccccccCcC------cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCcc
Confidence 346778864322233322 236788999999999999999999999876 677663
No 105
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.95 E-value=3.9e-06 Score=70.24 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=30.7
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+|.+|+|+|++||||||+++.|+..++..+++.|.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~ 36 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGE 36 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHH
Confidence 46789999999999999999999998888887764
No 106
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.95 E-value=4.1e-06 Score=70.44 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=24.0
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPC 63 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~ 63 (298)
|++++|+|||||||||+++.|++..++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCC
Confidence 578999999999999999999986654
No 107
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.95 E-value=3.6e-06 Score=70.58 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=31.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+++.+|+|+|++||||||+++.|+..++..+++.|.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~ 38 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDA 38 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHH
Confidence 357899999999999999999999988877776654
No 108
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.94 E-value=6.3e-06 Score=70.02 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=33.1
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.+.++.+|+|+|++||||||+++.|++.++..+++.|.
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~ 48 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGD 48 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHH
Confidence 34567799999999999999999999999988887774
No 109
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.93 E-value=3.6e-06 Score=77.95 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=30.0
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC-------CeEeecCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP-------CEIISIDS 70 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~-------~~iis~Ds 70 (298)
..++.+++|+||||||||||++.|++.+. ..+++.|.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 45678999999999999999999998864 23456665
No 110
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.93 E-value=4.2e-06 Score=69.89 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKIS 58 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La 58 (298)
++|++++|+||||||||||++.+.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc
Confidence 568899999999999999999864
No 111
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.92 E-value=6.8e-06 Score=68.16 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=26.6
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEII 66 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~ii 66 (298)
+.+|+|+|++||||||+++.|++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~ 32 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWL 32 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 578999999999999999999999875544
No 112
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.92 E-value=4.3e-06 Score=70.29 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=31.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+++.+|+|+|++||||||+++.|+..++..+++.|.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~ 42 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGD 42 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHH
Confidence 457799999999999999999999999888877664
No 113
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.92 E-value=5e-06 Score=70.93 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=28.0
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.+|+|+||+||||||+++.|++ ++..+++.|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~ 34 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADV 34 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHH
Confidence 5799999999999999999998 7777776665
No 114
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.91 E-value=4.8e-06 Score=70.79 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=28.2
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+|+|+|++||||||+++.|++ ++..+++.|.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEccH
Confidence 699999999999999999999 8888887775
No 115
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.91 E-value=4.6e-06 Score=76.83 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=26.6
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.++|.+++|+||||||||||++.|++.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 46799999999999999999999999874
No 116
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.90 E-value=4.8e-06 Score=82.28 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=31.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
.+|++++|+||||||||||++.|++.+. +++|.|+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~ 326 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVT 326 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEE
Confidence 5799999999999999999999998876 7788774
No 117
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.89 E-value=6e-06 Score=68.93 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=30.8
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.+.+|+|+|++||||||+++.|+..++..+++.|.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 39 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGD 39 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHH
Confidence 35789999999999999999999998888887764
No 118
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.89 E-value=6.4e-06 Score=89.08 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=37.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t 81 (298)
++|++++|+||||||||||++.|++.+. +++|+| +.|.++..
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~-----p~~G~I~i~g~~i~~ 1099 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFYD-----PMAGSVFLDGKEIKQ 1099 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSSC-----CSEEEEESSSSCTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEEccc
Confidence 5677899999999999999999999887 889999 58888764
No 119
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.89 E-value=5.3e-06 Score=73.43 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=32.3
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccc
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM 77 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~ 77 (298)
|.+++.+|+|+||+||||||+++.|++.++..+++.+ .+|+..
T Consensus 5 m~~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g--~~~r~~ 47 (233)
T 3r20_A 5 MVSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTG--AMYRIA 47 (233)
T ss_dssp ----CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH--HHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCC--cHHHHH
Confidence 4456789999999999999999999999887765444 466543
No 120
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.88 E-value=5.9e-06 Score=68.33 Aligned_cols=33 Identities=27% Similarity=0.188 Sum_probs=28.2
Q ss_pred CeEEEEECCCchhHHHHHHHHHh-hCCCeEeecC
Q psy8556 37 KTKVAILGPTASGKSSVALKISE-YIPCEIISID 69 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~-~l~~~iis~D 69 (298)
+.+|+|+|++||||||+++.|++ .++..+++.|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d 35 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHH
Confidence 46899999999999999999998 5676677665
No 121
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.87 E-value=5.1e-06 Score=83.22 Aligned_cols=53 Identities=15% Similarity=0.338 Sum_probs=37.9
Q ss_pred cCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCce
Q psy8556 14 TDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSAL 72 (298)
Q Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~q 72 (298)
.||.....++++++ +..+.. .+|++++|+||||||||||++.|++.+. +++|+
T Consensus 355 ~y~~~~~~l~~vsl~v~~G~~-~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~ 408 (608)
T 3j16_B 355 SYPSLKKTQGDFVLNVEEGEF-SDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQ 408 (608)
T ss_dssp EECCEEEECSSCEEEECCEEC-CTTCEEEEESCTTSSHHHHHHHHHTSSC-----CSBCC
T ss_pred EecCcccccCceEEEEecCcc-ccceEEEEECCCCCcHHHHHHHHhcCCC-----CCCCc
Confidence 34544444555555 444432 4578999999999999999999999876 66654
No 122
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.87 E-value=4.4e-06 Score=90.36 Aligned_cols=62 Identities=19% Similarity=0.189 Sum_probs=45.1
Q ss_pred hcccCchhh--hhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccCCCC
Q psy8556 11 DTETDPQQR--QLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDIGTN 82 (298)
Q Consensus 11 ~~~~~~~~~--~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i~t~ 82 (298)
++.+||+.. ..++|+++ .-++|++++|+||||||||||++.|++.++ +++|+| +.|.++...
T Consensus 393 v~~~y~~~~~~~vL~~isl-----~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~-----~~~G~i~i~g~~i~~~ 457 (1284)
T 3g5u_A 393 IHFSYPSRKEVQILKGLNL-----KVKSGQTVALVGNSGCGKSTTVQLMQRLYD-----PLDGMVSIDGQDIRTI 457 (1284)
T ss_dssp EEECCSSTTSCCSEEEEEE-----EECTTCEEEEECCSSSSHHHHHHHTTTSSC-----CSEEEEEETTEEGGGS
T ss_pred EEEEcCCCCCCcceecceE-----EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEHHhC
Confidence 344565432 34444444 225677899999999999999999998887 889999 578777543
No 123
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.86 E-value=4.5e-06 Score=83.63 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=38.1
Q ss_pred hhcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 10 RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
..++.|++....+.+++ .-.+|++++|+||||||||||++.|++.+. +++|.+
T Consensus 96 ~ls~~yg~~~~~l~~vs------~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-----p~~G~~ 148 (607)
T 3bk7_A 96 DCVHRYGVNAFVLYRLP------IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-----PNLCED 148 (607)
T ss_dssp SEEEECSTTCCEEECCC------CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-----CCTTTT
T ss_pred CeEEEECCCCeeeCCCC------CCCCCCEEEEECCCCChHHHHHHHHhCCCC-----CCCCcc
Confidence 35677754322333332 236788999999999999999999998876 677663
No 124
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.86 E-value=5e-06 Score=75.01 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=22.8
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
.++|+||||||||||++.|++... +++|.+ +.|.++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-----~~~G~i~~~g~~i 40 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-----SRKASSWNREEKI 40 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----CCCCccccCCccc
Confidence 589999999999999999999876 677777 455544
No 125
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.86 E-value=4.7e-06 Score=77.32 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=31.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM 77 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~ 77 (298)
+++++++|+||||||||||++.|++.++ +++|.| +.|.
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~-----~~~g~i~i~~~ 207 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIEDT 207 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSC-----TTSCEEEEESS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCcEEEECCe
Confidence 3467899999999999999999999877 778887 4443
No 126
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.85 E-value=7.1e-06 Score=70.86 Aligned_cols=36 Identities=17% Similarity=0.381 Sum_probs=31.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+++.+|+|+|++||||||+++.|+..++..+++.|.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~ 37 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGD 37 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhH
Confidence 457789999999999999999999999888887754
No 127
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.85 E-value=5.3e-06 Score=69.36 Aligned_cols=33 Identities=21% Similarity=0.459 Sum_probs=29.9
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.+|+|+|++||||||+++.|++.++..+++.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~ 35 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDV 35 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCch
Confidence 469999999999999999999999988887775
No 128
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.85 E-value=6.2e-06 Score=77.39 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=30.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
++|++++|+||||||||||++.|++.++ +++|.|.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~-----~~~g~I~ 207 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIP-----FDQRLIT 207 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSC-----TTSCEEE
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCC-----CCceEEE
Confidence 3466899999999999999999999887 6777774
No 129
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.84 E-value=6.6e-06 Score=81.24 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
.+|++++|+||||||||||++.|++.+. +++|.|+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~ 344 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIE 344 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEE
Confidence 5789999999999999999999999876 7777775
No 130
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.84 E-value=6.7e-06 Score=82.39 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=31.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
.+|++++|+||||||||||++.|++.+. +++|+|+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~ 414 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVE 414 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEE
Confidence 5789999999999999999999999876 7787774
No 131
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.84 E-value=8.7e-06 Score=66.46 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=27.4
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
.+|+|+||+||||||+++.| ..++..+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~ 32 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMS 32 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHh
Confidence 47999999999999999999 88888877654
No 132
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.83 E-value=1e-05 Score=69.69 Aligned_cols=34 Identities=32% Similarity=0.416 Sum_probs=29.9
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
++.+|+|+|++||||||+++.|++ ++..+++.|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~ 36 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADI 36 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccH
Confidence 467999999999999999999998 7878877764
No 133
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.83 E-value=7.3e-06 Score=68.34 Aligned_cols=35 Identities=11% Similarity=0.256 Sum_probs=30.6
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
++.+|+|+|++||||||+++.|+..++..+++.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~ 44 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGD 44 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHH
Confidence 46789999999999999999999999877776664
No 134
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.83 E-value=9e-06 Score=69.11 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=31.9
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
..++.+|+|+|++||||||+++.|++.++..+++.|.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~ 53 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGE 53 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhH
Confidence 3556799999999999999999999998877877664
No 135
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.82 E-value=1.1e-05 Score=77.80 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=40.6
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccc
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDM 77 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~ 77 (298)
.++.|+.+...++++-++ .+|++++|+||||||||||++.|++... +|+|.| ..|.
T Consensus 137 v~~~~~tg~~vld~vl~i------~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-----~~~G~i~~~G~ 193 (438)
T 2dpy_A 137 IEHVLDTGVRAINALLTV------GRGQRMGLFAGSGVGKSVLLGMMARYTR-----ADVIVVGLIGE 193 (438)
T ss_dssp CCSBCCCSCHHHHHHSCC------BTTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESC
T ss_pred cceecCCCceEEeeeEEe------cCCCEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEece
Confidence 455665444556666222 3467899999999999999999999987 677766 3443
No 136
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.81 E-value=8.7e-06 Score=79.47 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=33.2
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
..+|.+++|+||||||||||++.|++.+. .++|.| +.+.++
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~-----~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFE-----QQGKSVMLAAGDT 331 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEECCCT
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhh-----hcCCeEEEecCcc
Confidence 46789999999999999999999998875 566777 344443
No 137
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.81 E-value=1e-05 Score=73.51 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=29.6
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC--CeEeecC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP--CEIISID 69 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~--~~iis~D 69 (298)
..+|.+|+|+||+||||||+++.|+..++ ...||+|
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D 67 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND 67 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Confidence 45578999999999999999999999883 4555554
No 138
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.80 E-value=8.5e-06 Score=70.02 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=24.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
++|++++|+||||||||||++.|++..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999999854
No 139
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.80 E-value=1.2e-05 Score=67.16 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=28.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC---CCeEeecC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI---PCEIISID 69 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l---~~~iis~D 69 (298)
.+|.+|+|+|++||||||+++.|++.+ +.+++..|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 468899999999999999999999987 54444333
No 140
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.80 E-value=8.4e-06 Score=68.63 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=31.0
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
++.+|+|+|++||||||+++.|++.++..+++.|.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~ 45 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGE 45 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHH
Confidence 35789999999999999999999999888887764
No 141
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.80 E-value=7.9e-06 Score=67.91 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=28.6
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.|+|+||+||||||+++.|++.++..+++.|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~ 37 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDF 37 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccH
Confidence 58999999999999999999999888776664
No 142
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.79 E-value=7.6e-06 Score=68.31 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=27.8
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCC-----CeEeecC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIP-----CEIISID 69 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~-----~~iis~D 69 (298)
+.+|+|.|++||||||+++.|+..++ ..+++.|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 56899999999999999999999876 5555543
No 143
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.79 E-value=1.3e-05 Score=76.89 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=32.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
.++.+++|+||||||||||++.|++.++ +++|.| +.+.++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~-----~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN-----SSERNILTVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC-----CTTSCEEEEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEEecccc
Confidence 4678999999999999999999998876 566666 344443
No 144
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.79 E-value=9.4e-06 Score=69.54 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=31.3
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
..+|+|+|++||||||+++.|+..++.+++++|.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~ 45 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDR 45 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcH
Confidence 4689999999999999999999988999998886
No 145
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.79 E-value=8.8e-06 Score=69.55 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=25.4
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
..++.+++|+||+||||||+++.|++.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999999876
No 146
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.79 E-value=1.1e-05 Score=67.10 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEII 66 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~ii 66 (298)
+++.+|+|+|++||||||+++.|++.++..++
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 35779999999999999999999999886655
No 147
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.78 E-value=1.1e-05 Score=70.01 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=30.5
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
++.+|+|+|++||||||+++.|+..++...++.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~ 40 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGD 40 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechH
Confidence 46789999999999999999999999888887664
No 148
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.77 E-value=1e-05 Score=70.40 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=22.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKIS 58 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La 58 (298)
++|++++|+||||||||||++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 568899999999999999999998
No 149
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.77 E-value=1.3e-05 Score=73.14 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=28.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe----ccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY----CDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy----~g~~i~t 81 (298)
..+++++|+||||||||||++.|++... +++|.|. .|.++++
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~~~~~~g~~~t~ 212 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSEKLQRGRHTTT 212 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-------------CCC
T ss_pred hcCCeEEEECCCCCcHHHHHHHhccccc-----ccccceecccCCCCCcee
Confidence 3578999999999999999999988776 7788884 5666543
No 150
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.76 E-value=1.1e-05 Score=66.56 Aligned_cols=33 Identities=15% Similarity=0.366 Sum_probs=29.5
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.+|+|+|++||||||+++.|+..++..+++.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~ 35 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDI 35 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccH
Confidence 479999999999999999999999888887764
No 151
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.76 E-value=1.3e-05 Score=74.87 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=37.9
Q ss_pred hcccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 11 DTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
.++.|+.+...++++-++ .+|++++|+||||||||||++.|++... +|++.+
T Consensus 51 l~~~~~tg~~ald~ll~i------~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-----~~~g~i 102 (347)
T 2obl_A 51 IDQPFILGVRAIDGLLTC------GIGQRIGIFAGSGVGKSTLLGMICNGAS-----ADIIVL 102 (347)
T ss_dssp CCSEECCSCHHHHHHSCE------ETTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEE
T ss_pred cceecCCCCEEEEeeeee------cCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEE
Confidence 345565444556666223 3467899999999999999999999986 566655
No 152
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.75 E-value=1.1e-05 Score=68.24 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=22.5
Q ss_pred EEEEECCCchhHHHHHHHHHhhCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.++|+||||||||||++.|++.++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999886
No 153
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.75 E-value=1.4e-05 Score=70.50 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=31.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+++.+|+|+||+||||||+++.|++.++...++.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~ 62 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGD 62 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHH
Confidence 467899999999999999999999998888887764
No 154
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.74 E-value=7e-06 Score=79.58 Aligned_cols=28 Identities=29% Similarity=0.576 Sum_probs=25.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
++|++++|+||||||||||++.|++.+.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 4688999999999999999999999875
No 155
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.73 E-value=1.4e-05 Score=65.94 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=30.0
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
-++|+|+|+.||||||+++.|+..++.++++.|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~ 40 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDM 40 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 3689999999999999999999999988887764
No 156
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.73 E-value=1.6e-05 Score=69.49 Aligned_cols=27 Identities=26% Similarity=0.269 Sum_probs=24.9
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.++|.+|+|.||+||||||+++.|++.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 367899999999999999999999887
No 157
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.72 E-value=9.5e-06 Score=68.32 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=23.2
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
++++|+|+||||||||++.|++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5799999999999999999999875
No 158
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.72 E-value=9.3e-06 Score=67.80 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.+++.++|+||+|||||||++.+++.+
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 447889999999999999999999876
No 159
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.72 E-value=1.6e-05 Score=67.35 Aligned_cols=32 Identities=41% Similarity=0.479 Sum_probs=29.3
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+|+|+|++||||||+++.|++.++..+++.|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~ 35 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGL 35 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccch
Confidence 89999999999999999999999888887765
No 160
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.71 E-value=2e-05 Score=72.10 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=30.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-e---ccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-Y---CDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y---~g~~i~t 81 (298)
..+++++|+||||||||||++.|+ ... +++|.| + +|.++++
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~t~ 207 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHTTT 207 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------CCC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCcee
Confidence 457899999999999999999998 765 778888 4 5665543
No 161
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.71 E-value=2e-05 Score=68.97 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=30.9
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeec
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIPCEIISI 68 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~ 68 (298)
.+++++|+|+||.||||||.+..|++.++...||.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 36788999999999999999999999998777654
No 162
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.70 E-value=1.8e-05 Score=69.29 Aligned_cols=41 Identities=29% Similarity=0.410 Sum_probs=32.8
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEec
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYC 75 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~ 75 (298)
-..++.+|+|+|++||||||+++.|++.++..+++.|. +++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~--~~~ 52 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA--MYR 52 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH--HHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCC--eeE
Confidence 34667899999999999999999999988877765554 553
No 163
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.69 E-value=1.3e-05 Score=69.31 Aligned_cols=35 Identities=31% Similarity=0.252 Sum_probs=29.7
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
++.+|+|+||+||||||+++.|++.++...++.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~ 38 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGD 38 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHH
Confidence 45689999999999999999999999876665543
No 164
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.69 E-value=1.4e-05 Score=75.32 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=25.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+++.+++|+|||||||||+++.|++.++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 5688999999999999999999998765
No 165
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.68 E-value=2e-05 Score=67.59 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=28.7
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.|+|+||+||||||+++.|++.++..+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~ 33 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGD 33 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHH
Confidence 48899999999999999999999988887764
No 166
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.68 E-value=1.5e-05 Score=68.18 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=23.0
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
|++++|+||||||||||++.|++.+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 4679999999999999999999876
No 167
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.67 E-value=1.4e-05 Score=74.83 Aligned_cols=26 Identities=38% Similarity=0.486 Sum_probs=24.9
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
++.++|+||||||||||++.|++.++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 78899999999999999999999987
No 168
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.67 E-value=3.4e-06 Score=74.36 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=27.8
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
.+++|+||||||||||+.+|++.+. +++|+| +.|.++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCEEc
Confidence 4689999999999999999999876 778887 566555
No 169
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.67 E-value=1.8e-05 Score=67.83 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=28.5
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.|+|+||+||||||+++.|++.++..+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~ 33 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGD 33 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHH
Confidence 48899999999999999999999888887764
No 170
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.66 E-value=1.7e-05 Score=68.54 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=30.8
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
++..|+|+|+.||||||+++.|+..++..+++.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~ 38 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGD 38 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhH
Confidence 45679999999999999999999999988887764
No 171
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.66 E-value=2e-05 Score=64.62 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=28.7
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.|+|+|++||||||+++.|+..++..+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~ 33 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDE 33 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcH
Confidence 58999999999999999999988888877664
No 172
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.65 E-value=2.1e-05 Score=71.14 Aligned_cols=37 Identities=32% Similarity=0.335 Sum_probs=31.6
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.+.++.+|+|+|++||||||+++.|+ .++..+|++|.
T Consensus 71 ~~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~ 107 (281)
T 2f6r_A 71 LPSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDH 107 (281)
T ss_dssp SCTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhH
Confidence 34567899999999999999999999 56888888875
No 173
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.62 E-value=3.1e-05 Score=65.40 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=26.7
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCC-CeEe
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIP-CEII 66 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~-~~ii 66 (298)
+|.+|+|.|+.||||||+++.|++.++ ..++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~ 34 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIK 34 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceE
Confidence 578999999999999999999999883 3444
No 174
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.61 E-value=1.7e-05 Score=72.99 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe----ccccCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY----CDMDIGT 81 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy----~g~~i~t 81 (298)
.+|++++|+||||||||||++.|++... +++|.|. +|.++++
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~~~~~~G~~tt~ 216 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISEHLGRGKHTTR 216 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC------------------------CC
T ss_pred cCCCEEEEECCCCCCHHHHHHHhccccc-----ccccceeeecCCCccccc
Confidence 4578999999999999999999987654 6677774 5555543
No 175
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.61 E-value=2.7e-05 Score=70.97 Aligned_cols=37 Identities=27% Similarity=0.203 Sum_probs=30.3
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC-------CeEe-ecCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP-------CEII-SIDS 70 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~-------~~ii-s~Ds 70 (298)
.+++.+|+|+||||||||||++.|++.++ ..++ +.|+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~ 72 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD 72 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccc
Confidence 35688999999999999999999998875 2334 7776
No 176
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.61 E-value=1.9e-05 Score=72.61 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=35.9
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCC---CeEeecCCceE-eccccCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIP---CEIISIDSALV-YCDMDIG 80 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~---~~iis~Ds~qv-y~g~~i~ 80 (298)
+-++++|+|++|||||||++.|++... ..+|..|.|.| ..|..+.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 457899999999999999999998763 35677888888 5665553
No 177
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.60 E-value=2.8e-05 Score=74.39 Aligned_cols=34 Identities=26% Similarity=0.201 Sum_probs=28.7
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
++.+++|+||||||||||++.|++... +++|.+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~-----p~~GsI~ 101 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGN-----EEEGAAK 101 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCT-----TSTTSCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC-----ccCceEE
Confidence 345899999999999999999998776 6777773
No 178
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.59 E-value=2.3e-05 Score=72.85 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=30.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE-eccccC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV-YCDMDI 79 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv-y~g~~i 79 (298)
.++.+++|+||||||||||++.|++.+. ++++.| +.+.++
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~-----~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT-----AAGHKVAVLAVDP 93 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh-----hCCCEEEEEEEcC
Confidence 5688999999999999999999998764 455555 344443
No 179
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.57 E-value=1.6e-05 Score=79.56 Aligned_cols=66 Identities=21% Similarity=0.220 Sum_probs=34.3
Q ss_pred HhhhcccCchhh-hhhccc---cccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeec-CCceE-eccccC
Q psy8556 8 LDRDTETDPQQR-QLTADF---RRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISI-DSALV-YCDMDI 79 (298)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~-Ds~qv-y~g~~i 79 (298)
+...+..|+++. .+++.. +....+..- .-+.++|+||||||||||++.|++.+. + ++|.| +.|.++
T Consensus 13 ~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l-~lp~iaIvG~nGsGKSTLL~~I~Gl~~-----P~~sG~vt~~g~~i 84 (608)
T 3szr_A 13 ENNLCSQYEEKVRPCIDLIDSLRALGVEQDL-ALPAIAVIGDQSSGKSSVLEALSGVAL-----PRGSGIVTRCPLVL 84 (608)
T ss_dssp -------CHHHHHHHHHHHHHHHHHSCCSSC-CCCCEECCCCTTSCHHHHHHHHHSCC------------CCCSCEEE
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCCCCCcc-cCCeEEEECCCCChHHHHHHHHhCCCC-----CCCCCeEEEcCEEE
Confidence 345677786653 444433 333322221 223499999999999999999998753 4 67777 466554
No 180
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.57 E-value=1.6e-05 Score=67.67 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=26.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEII 66 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~ii 66 (298)
++|.+|+|+|++||||||+++.|++.++...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999999988764333
No 181
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.56 E-value=3.6e-05 Score=64.29 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=26.9
Q ss_pred EEEEECCCchhHHHHHHHHHhhC---CCeEeecC
Q psy8556 39 KVAILGPTASGKSSVALKISEYI---PCEIISID 69 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l---~~~iis~D 69 (298)
+|+|.|+.||||||+++.|++.+ +..+++.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 68999999999999999999987 66676655
No 182
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.55 E-value=4.6e-05 Score=63.44 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=23.0
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+.+|+||||||||||+.+|+..++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3899999999999999999998876
No 183
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.55 E-value=4e-05 Score=66.88 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=31.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.++..|+|+|+.||||||+++.|+..++..+++.|.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~ 49 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGD 49 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHH
Confidence 456789999999999999999999999877777653
No 184
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.54 E-value=4.5e-05 Score=63.92 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=25.9
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+++.+|+|+|++||||||+++.|++.++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999998874
No 185
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.54 E-value=3.2e-05 Score=75.86 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=28.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
++|..++|+|||||||||+++.|++.++ ++++.+
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~-----~~~gii 291 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIP-----PDAKVV 291 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCC-----CCCCEE
Confidence 4577899999999999999999998876 566655
No 186
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.54 E-value=1.7e-05 Score=67.60 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=25.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
++|.+|+|+|+.||||||+++.|++.++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999998764
No 187
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.53 E-value=4.2e-05 Score=65.59 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=30.4
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+.+|+|+|++||||||+++.|++.++..+++.|.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~ 36 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGA 36 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCCh
Confidence 5689999999999999999999999988877665
No 188
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.51 E-value=5.2e-05 Score=63.81 Aligned_cols=27 Identities=41% Similarity=0.671 Sum_probs=24.3
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEI 65 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~i 65 (298)
+|+|.|++||||||+++.|++.++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~ 28 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEI 28 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcE
Confidence 689999999999999999999887544
No 189
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.51 E-value=4.9e-05 Score=68.47 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.6
Q ss_pred EEEECCCchhHHHHHHHHHhhCCCeEee
Q psy8556 40 VAILGPTASGKSSVALKISEYIPCEIIS 67 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l~~~iis 67 (298)
++|+||+|||||||++.||+.++...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence 8999999999999999999998755443
No 190
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.50 E-value=2.4e-05 Score=67.12 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=26.6
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
...+|.+|+|+|++||||||+++.|++.++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346688999999999999999999998875
No 191
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.49 E-value=4.5e-05 Score=71.49 Aligned_cols=28 Identities=32% Similarity=0.544 Sum_probs=25.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.++.+++|+||||||||||++.|++.++
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4567999999999999999999998764
No 192
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.48 E-value=5.4e-05 Score=64.09 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=25.4
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPC 63 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~ 63 (298)
++.+|+|.|++||||||+++.|++.++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4779999999999999999999998763
No 193
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.47 E-value=3.2e-05 Score=64.40 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=23.0
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+|+|.|++||||||+++.|++.++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999876
No 194
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.46 E-value=6.7e-05 Score=70.89 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=28.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEee
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIIS 67 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis 67 (298)
+++.+++|+||+|||||||++.|++.+++.+++
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 567899999999999999999999987766553
No 195
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.45 E-value=5.9e-05 Score=64.52 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
++|.+++|+||||||||||++.++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999654
No 196
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.44 E-value=3.9e-05 Score=62.85 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=24.5
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+++.++|+||+|||||||++.+++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999998763
No 197
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.43 E-value=3.7e-05 Score=70.97 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=36.1
Q ss_pred cccCchhhhhhccccc-ccccc-ccCCCeEEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556 12 TETDPQQRQLTADFRR-IRTGK-LLFRKTKVAILGPTASGKSSVALKISEYIPCEI 65 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~-~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~i 65 (298)
++.|+ +...+.+++. +..+. ....+..++|+||+|+|||||++.+++.++..+
T Consensus 25 ~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 25 DEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp GGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred HHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 34443 4556666665 33331 112346799999999999999999999987543
No 198
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.42 E-value=8.7e-05 Score=66.01 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=26.1
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhh---CCCeEe
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEY---IPCEII 66 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~---l~~~ii 66 (298)
++.+|+|+|++||||||+++.|+.. .+..++
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 4678999999999999999999987 554444
No 199
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.42 E-value=6.4e-05 Score=65.23 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=28.1
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+|+|.|++||||||+++.|+..++..+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd 33 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGG 33 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHH
Confidence 58999999999999999999988877776654
No 200
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.41 E-value=7.3e-05 Score=67.34 Aligned_cols=33 Identities=27% Similarity=0.179 Sum_probs=28.0
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC-CCeEeecC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI-PCEIISID 69 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l-~~~iis~D 69 (298)
+.+|+|+|++||||||+++.|+..+ +..+++.|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 4689999999999999999999875 66677666
No 201
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.41 E-value=5.6e-05 Score=64.88 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=28.3
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.|+|+|++||||||+++.|+..++..+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~ 33 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGD 33 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHH
Confidence 48999999999999999999988878877754
No 202
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.40 E-value=5.2e-05 Score=74.37 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=37.3
Q ss_pred ccCchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHH--HHhhCCCeEeecCCceEe
Q psy8556 13 ETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALK--ISEYIPCEIISIDSALVY 74 (298)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~--La~~l~~~iis~Ds~qvy 74 (298)
+.|+.+...+++++. |. -++|++++|+||||||||||++. +++... ++++.+|
T Consensus 19 ~~~~~g~~~Ld~i~~---G~-i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~ 73 (525)
T 1tf7_A 19 AKMRTMIEGFDDISH---GG-LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVF 73 (525)
T ss_dssp CEECCCCTTHHHHTT---SS-EETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEE
T ss_pred ccccCCchhHHHhcC---CC-CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEE
Confidence 445666555555543 21 25678999999999999999999 566654 5677775
No 203
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.39 E-value=5.3e-05 Score=72.66 Aligned_cols=43 Identities=12% Similarity=-0.016 Sum_probs=29.3
Q ss_pred cccCchhhhhhccccccccccccCCCeE--EEEECCCchhHHHHHHHHHhhC
Q psy8556 12 TETDPQQRQLTADFRRIRTGKLLFRKTK--VAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~kg~i--I~I~GpTGSGKSTLa~~La~~l 61 (298)
+..|++.. +.++++ .-++|.+ ++|+||||||||||++.|++..
T Consensus 22 ~~~y~~~~--L~~vsl-----~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 22 HVGFDSLP--DQLVNK-----SVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CC-CC--C--HHHHHH-----SCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCee--cCCCce-----EecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 55665432 444444 2356778 9999999999999999999863
No 204
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.38 E-value=8.5e-05 Score=62.22 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.2
Q ss_pred EEEEECCCchhHHHHHHHHHhhC---CCeEe
Q psy8556 39 KVAILGPTASGKSSVALKISEYI---PCEII 66 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l---~~~ii 66 (298)
+|+|.|+.||||||+++.|++.+ +..++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 68999999999999999999987 65555
No 205
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.37 E-value=0.00011 Score=64.59 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=24.6
Q ss_pred EEEECCCchhHHHHHHHHHhhCCCeEeec
Q psy8556 40 VAILGPTASGKSSVALKISEYIPCEIISI 68 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l~~~iis~ 68 (298)
++|+||||||||||++.+++.++...+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 89999999999999999999887544433
No 206
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.36 E-value=9.7e-05 Score=63.90 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=27.0
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeec
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISI 68 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~ 68 (298)
+|+|+||+||||+|.+..|++.++...||.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 688999999999999999999998777654
No 207
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.36 E-value=7.1e-05 Score=74.12 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=25.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+|.+++|+|+||||||||++.|++.++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 4688999999999999999999999875
No 208
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.34 E-value=9.1e-05 Score=66.78 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=25.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+|++++|+||||||||||++.|++.+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999998763
No 209
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.33 E-value=9.6e-05 Score=67.83 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=25.8
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
..++++++|+|||||||||++..||..+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 35688999999999999999999998764
No 210
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.31 E-value=4.5e-05 Score=64.51 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=23.8
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
..++..++|+|+||||||||++.|++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567889999999999999999997654
No 211
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.30 E-value=0.00012 Score=62.25 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISE 59 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~ 59 (298)
++|.+++|+||||||||||+..++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999999987
No 212
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.27 E-value=0.00015 Score=59.25 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=21.7
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+.+.+|+|||||||||++.+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999997544
No 213
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.27 E-value=0.00012 Score=63.25 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
++|.+++|+||||||||||+..++..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 56889999999999999999999984
No 214
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.26 E-value=0.00017 Score=64.46 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=24.2
Q ss_pred EEEECCCchhHHHHHHHHHhhCCCeEee
Q psy8556 40 VAILGPTASGKSSVALKISEYIPCEIIS 67 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l~~~iis 67 (298)
++|+||||||||||++.|++.++...+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence 8999999999999999999988744443
No 215
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.24 E-value=0.00019 Score=63.23 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=27.3
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.-+.|+||+|+||||+++.+++.++.+++..+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~ 78 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG 78 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEECS
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeH
Confidence 348899999999999999999998766655543
No 216
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.23 E-value=0.00017 Score=63.21 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=26.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+|.+|+|.||+||||||+++.|++.++
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999999886
No 217
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.22 E-value=0.00018 Score=65.61 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=24.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.+|.+++|+|||||||||++..||..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999876
No 218
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.21 E-value=0.00011 Score=77.11 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=23.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISE 59 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~ 59 (298)
.+|++++|+||||||||||++.|++
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5678999999999999999999984
No 219
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.20 E-value=0.0011 Score=56.48 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+..+.|.||+|+||||+++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 466799999999999999999998764
No 220
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.19 E-value=8.6e-05 Score=63.13 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=22.4
Q ss_pred EEEEECCCchhHHHHHHHHHhhCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+|+|+|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999998875
No 221
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.17 E-value=0.00029 Score=63.86 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=30.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
..+..+.|.||+|+|||+|++.+++.++..++..+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 346679999999999999999999999877776654
No 222
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.16 E-value=0.00017 Score=67.57 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=26.3
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
+|++++|+||||||||||++.|++... ++++|.|
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~----~~~~G~I 247 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN----EILTNDV 247 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS----CCCCC--
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc----ccccCCc
Confidence 578999999999999999999987653 1455555
No 223
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.10 E-value=0.00023 Score=62.34 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=30.8
Q ss_pred cccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 32 KLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 32 ~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
+|+.+..+|+|.|+.||||||+++.||+.++.+++..|
T Consensus 9 ~m~~~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~ 46 (223)
T 3hdt_A 9 FMGNKNLIITIEREYGSGGRIVGKKLAEELGIHFYDDD 46 (223)
T ss_dssp ---CCCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred ccCCCCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHH
Confidence 45556789999999999999999999999998876543
No 224
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.09 E-value=0.0002 Score=64.03 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
++|.+++|+||||||||||+..++...
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998753
No 225
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.09 E-value=0.00032 Score=60.13 Aligned_cols=35 Identities=23% Similarity=0.157 Sum_probs=30.3
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
..+|+|.|+.||||||+++.||+.++.+++ | +.+|
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~--D-~~~~ 40 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLY--S-KELL 40 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEE--C-HHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEE--C-HHHH
Confidence 468999999999999999999999998887 3 4454
No 226
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.09 E-value=0.00017 Score=67.98 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=24.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+| +++|+||||||||||+.+|+..++
T Consensus 59 ~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 566 999999999999999999988876
No 227
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.08 E-value=0.00029 Score=65.61 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=25.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
++|.++.|+||||||||||+..++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 678999999999999999999999876
No 228
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.07 E-value=0.00027 Score=65.23 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=26.0
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
..++++++|+||+||||||++..||..+.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999998764
No 229
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.06 E-value=0.00026 Score=59.41 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=22.6
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+..+++|+|++|||||||+..|+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998865
No 230
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.06 E-value=0.00023 Score=71.80 Aligned_cols=20 Identities=45% Similarity=0.496 Sum_probs=18.4
Q ss_pred CCCeEEEEECCCchhHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVA 54 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa 54 (298)
++|++++|+||||||||||+
T Consensus 42 ~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 42 PRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHh
Confidence 56789999999999999996
No 231
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.03 E-value=8.6e-05 Score=63.07 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=21.7
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEI 65 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~i 65 (298)
++.|+|++||||||++..|+.. +.++
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCe
Confidence 3789999999999999999866 5343
No 232
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.03 E-value=0.00026 Score=63.39 Aligned_cols=67 Identities=13% Similarity=0.290 Sum_probs=42.3
Q ss_pred ChHHHHhhhcccCchhhhhhccccc-ccc-----c-----cccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 3 DVKDVLDRDTETDPQQRQLTADFRR-IRT-----G-----KLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~-----~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
+++++.+...+...+++..+..+.. +.. + .....+.-+.|.||+|+|||++++.++..++..++..+
T Consensus 5 ~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~ 82 (310)
T 1ofh_A 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (310)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 4566666666655555554444332 111 0 00123456889999999999999999999876665444
No 233
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.01 E-value=0.00049 Score=61.66 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=28.7
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
.+.-+.|.||+|+|||++++.+++.++..++..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~ 86 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNIS 86 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEee
Confidence 4567899999999999999999999987665444
No 234
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.00 E-value=0.00029 Score=63.77 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=31.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
+.+..+.|.||+|+|||+|++.+|..++..++..+..++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l 72 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence 445678889999999999999999999877766554333
No 235
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.00 E-value=0.00047 Score=64.00 Aligned_cols=35 Identities=26% Similarity=0.496 Sum_probs=29.4
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.+.-+.|.||+|+|||++++.||..++.+++..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence 34568999999999999999999999877765553
No 236
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.98 E-value=0.00036 Score=61.12 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=26.3
Q ss_pred ccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 23 ADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 23 ~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+.|-+..+.+...+|.+|+|.|+.||||||+++.|++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 7 HHMGTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp ------------CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4455666667778899999999999999999999998775
No 237
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.97 E-value=0.00039 Score=63.29 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=24.9
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
++++++|+|++||||||++..||..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999998764
No 238
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.97 E-value=0.00037 Score=58.64 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=22.5
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.++++|+|++|||||||+..|++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998764
No 239
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.95 E-value=0.00034 Score=71.77 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=23.1
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
|++++|+|||||||||+++.+++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 7899999999999999999999753
No 240
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.92 E-value=0.00038 Score=73.55 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=29.8
Q ss_pred cccCchhhhhhcccccc-cc-ccccCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 12 TETDPQQRQLTADFRRI-RT-GKLLFRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-~~-~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+..|+++.+..++++.. .. .....+|++++|+|||||||||+++.+ +.+
T Consensus 762 ~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 762 TKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp -----CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred EEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 34554555666666652 11 011234789999999999999999999 553
No 241
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.92 E-value=0.00059 Score=60.67 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=28.5
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
.+.-+.|.||+|+|||++++.++..++..++..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~ 83 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVV 83 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 3456899999999999999999999987765544
No 242
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.92 E-value=0.00046 Score=59.94 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=29.4
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
..|+|+|.-||||||+++.|+. ++.+++++|.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 4699999999999999999988 8999998885
No 243
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.91 E-value=0.00041 Score=64.99 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.9
Q ss_pred eEEEEECCCchhHHHHHHHHHhhC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.+++|+||||||||||+.+|+-.+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999987553
No 244
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.89 E-value=0.00072 Score=55.29 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.2
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+..+.|+||+|+|||++++.++..+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999876
No 245
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.88 E-value=0.00037 Score=61.75 Aligned_cols=30 Identities=27% Similarity=0.247 Sum_probs=25.5
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+.+++.+|+|.|+.||||||+++.|++.++
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346788999999999999999999999985
No 246
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.88 E-value=0.00057 Score=58.59 Aligned_cols=26 Identities=31% Similarity=0.221 Sum_probs=22.3
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+.+.+|+|||||||||++.+|.-.+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999999875543
No 247
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.87 E-value=0.00064 Score=59.38 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=27.3
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
+.-+.|.||+|+|||++++.++..++..++..+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~ 71 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMA 71 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 455889999999999999999998876665443
No 248
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.86 E-value=0.00048 Score=59.49 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=22.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
++|.+++|+||+|||||||+..++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999998888654
No 249
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.85 E-value=0.00085 Score=58.52 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=25.0
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+|.+|+|.|+.||||||+++.|++.++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999999985
No 250
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.84 E-value=0.00084 Score=54.82 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=22.4
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+..+.|+||+|+|||++++.++..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999876
No 251
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.84 E-value=0.00064 Score=67.01 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=26.8
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEI 65 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~i 65 (298)
++..++|+||||+|||||++.|++.++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 578999999999999999999999987544
No 252
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.84 E-value=0.00049 Score=57.67 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.8
Q ss_pred eEEEEECCCchhHHHHHHHHHhhC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
..++|+|++|||||||++.+++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999999865
No 253
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.84 E-value=0.00027 Score=71.27 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKIS 58 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La 58 (298)
++|++++|+||||||||||++.+.
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cCCCEEEEEeeCCCCHHHHHHHHH
Confidence 578899999999999999997653
No 254
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.83 E-value=0.00052 Score=63.41 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=21.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISE 59 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~ 59 (298)
-.+.+.+|+|||||||||++.+|+-
T Consensus 21 f~~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 21 FKEGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3457889999999999999998753
No 255
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.83 E-value=0.00064 Score=64.76 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=24.7
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+.+++|+||||||||||+.+|+..++
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 468999999999999999999998876
No 256
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.82 E-value=0.00056 Score=57.45 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.5
Q ss_pred eEEEEECCCchhHHHHHHHHHhhC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
..++|+|++|||||||++.|++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999999864
No 257
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.81 E-value=0.00058 Score=70.44 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
++|++++|+|||||||||+++.+++.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 56889999999999999999999875
No 258
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.80 E-value=0.00051 Score=61.72 Aligned_cols=56 Identities=20% Similarity=0.164 Sum_probs=36.5
Q ss_pred HHhhhcccCchhhhhhccccc-cccc----ccc-CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 7 VLDRDTETDPQQRQLTADFRR-IRTG----KLL-FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~-~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+-...++.+.+++..+..+.. +..+ ..+ ++...+.|+||+|+|||++++.|++.+.
T Consensus 11 l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 11 LEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 334445566666665555444 2222 111 2234799999999999999999999873
No 259
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.79 E-value=0.00052 Score=60.45 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=28.4
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.++|+||.||||||++..|++.++...|+.+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gd 41 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQISTGD 41 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeechH
Confidence 58999999999999999999999888876653
No 260
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.78 E-value=0.00076 Score=55.56 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.0
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
+...|+|+|++|+|||||++.|++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999864
No 261
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.75 E-value=0.00077 Score=63.93 Aligned_cols=39 Identities=28% Similarity=0.332 Sum_probs=29.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC-------CCeEeecCCceE
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI-------PCEIISIDSALV 73 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l-------~~~iis~Ds~qv 73 (298)
.++..++|+|+||||||||++.|++.- +...+.+++|.+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v 63 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKV 63 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeee
Confidence 457789999999999999999999832 223455666666
No 262
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.74 E-value=0.00076 Score=61.79 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=20.0
Q ss_pred EEEECCCchhHHHHHHHHHhh
Q psy8556 40 VAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~ 60 (298)
+.|+||+|+||||+++.+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999994
No 263
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.72 E-value=0.00083 Score=59.55 Aligned_cols=35 Identities=34% Similarity=0.376 Sum_probs=28.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
..+.-+.|.||+|+|||++++.++...+..++..+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~ 96 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 96 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 34567899999999999999999998876655443
No 264
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.71 E-value=0.00081 Score=70.24 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.+|++++|+|||||||||+++.++..
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHH
Confidence 45789999999999999999998753
No 265
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.71 E-value=0.00078 Score=64.87 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=34.4
Q ss_pred CchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEee
Q psy8556 15 DPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIIS 67 (298)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis 67 (298)
+-++++++...+.++......+...+.|.||+|+||||+++.|++.++...+.
T Consensus 28 ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~ 80 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVER 80 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred hCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 34556666332322222111223468999999999999999999998865543
No 266
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.69 E-value=0.00098 Score=62.00 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+.+.+|+|+|++|||||||++.|++.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999864
No 267
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.68 E-value=0.00084 Score=58.45 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=26.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPC 63 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~ 63 (298)
.+|.+|+|.|+.||||||++..|++.++.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46889999999999999999999998873
No 268
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.67 E-value=0.0013 Score=55.51 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=34.9
Q ss_pred cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
++++...-.+.-+.|.|+||+||||++..|... +..+++-|...+.
T Consensus 7 lHas~v~v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v~i~ 52 (181)
T 3tqf_A 7 WHANFLVIDKMGVLITGEANIGKSELSLALIDR-GHQLVCDDVIDLK 52 (181)
T ss_dssp EESEEEEETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEEEEE
T ss_pred EEEEEEEECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEEEEE
Confidence 444555566778999999999999999999874 6677766655454
No 269
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.65 E-value=0.0013 Score=57.15 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=27.8
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
...+.|.||.|+||||++.+|++.+.+.+++..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~fa 90 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFV 90 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEE
Confidence 446899999999999999999999877766543
No 270
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.65 E-value=0.0012 Score=64.61 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=26.1
Q ss_pred EEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 40 VAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
++|+||+|+|||||++.|++..+...+..+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~~~i~i~ 96 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARVPFITAS 96 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 899999999999999999999876665544
No 271
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.64 E-value=0.0011 Score=61.84 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=28.4
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+.-+.|.||+|+|||++++.++..++.+++..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~ 105 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDA 105 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecc
Confidence 4458899999999999999999999876665543
No 272
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.62 E-value=0.00093 Score=54.97 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.9
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
++..|+|+|++|+|||||++.|++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667999999999999999999864
No 273
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.61 E-value=0.0011 Score=60.73 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
..+..++|.||+|+|||||++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999876
No 274
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.60 E-value=0.001 Score=57.60 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+|.+|+|.|+.||||||+++.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999998774
No 275
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.59 E-value=0.00099 Score=56.13 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=22.0
Q ss_pred eEEEEECCCchhHHHHHHHHHhhC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
..+.|.||+|+|||+|++.++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999865
No 276
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0011 Score=63.61 Aligned_cols=38 Identities=16% Similarity=0.345 Sum_probs=31.5
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
.++=+.+.||+|+|||+|++++|+.++..+++.+...+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 34558899999999999999999999988877665443
No 277
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.58 E-value=0.001 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.8
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..++|+|++|+|||||++.+++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 278
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.57 E-value=0.00092 Score=58.98 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+|.+|+|.|++||||||++..|++.+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998774
No 279
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.56 E-value=0.0013 Score=61.63 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.4
Q ss_pred eEEEEECCCchhHHHHHHHHHhhC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.+++|+|||||||||++.+|+...
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHhc
Confidence 389999999999999999998643
No 280
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.54 E-value=0.00095 Score=58.56 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=22.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+|.+|+|.||.||||||+++.|++.++
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999998875
No 281
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.54 E-value=0.0015 Score=65.58 Aligned_cols=34 Identities=26% Similarity=0.518 Sum_probs=28.9
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhC---CCeEeecC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYI---PCEIISID 69 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l---~~~iis~D 69 (298)
++.+|.|+|++||||||+++.|+..+ +...+..|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 67899999999999999999999987 65555454
No 282
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.0012 Score=63.42 Aligned_cols=38 Identities=13% Similarity=0.278 Sum_probs=31.8
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
.++=|.+.||+|+|||.|++++|+.++..+++.+...+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 35568899999999999999999999988877665444
No 283
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.54 E-value=0.00091 Score=66.66 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=30.6
Q ss_pred hhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 17 QQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
++...+.+++. +.. +..++|+||+|||||||++.|++.++
T Consensus 45 G~~~~l~~l~~~i~~------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQ------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SCHHHHHHHHHHHHT------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CchhhHhhccccccC------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 44555555555 333 34699999999999999999999886
No 284
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.52 E-value=0.0018 Score=59.40 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=27.7
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhC-CCeEeecC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYI-PCEIISID 69 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l-~~~iis~D 69 (298)
++.-+.|.||+|+|||+|++.+|..+ +..+++.+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~ 78 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 78 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEE
Confidence 44678899999999999999999988 55555444
No 285
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0012 Score=63.44 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=31.3
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
.++=+.+.||+|+|||+|++++|..++..+++.+...+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l 251 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI 251 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhh
Confidence 45568899999999999999999999988876654433
No 286
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.52 E-value=0.0018 Score=60.17 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=29.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
..+.-+.|.||+|+|||+|++.++..++..++..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~ 149 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSIS 149 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEe
Confidence 34567899999999999999999999987765444
No 287
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.52 E-value=0.001 Score=60.99 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.9
Q ss_pred EEEEECCCchhHHHHHHHHHhhCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+.+|+||||||||||+.+|.-.++
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred cEEEECCCCCcHHHHHHHHHHHhC
Confidence 899999999999999999987664
No 288
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.51 E-value=0.0014 Score=67.63 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=29.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
..+..++|+||+|||||||++.|++.++..++..+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 55678999999999999999999999886665444
No 289
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.51 E-value=0.0012 Score=60.52 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
..+..+.|.||+|+||||+++.++..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 446679999999999999999999876
No 290
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.51 E-value=0.0009 Score=60.08 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+.+.-+.|.||+|+|||++++.+++.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344568999999999999999999876
No 291
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.51 E-value=0.0015 Score=59.67 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=29.2
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.+.-+.|.||+|+|||+|++.++..++..++..+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~ 84 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 84 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch
Confidence 34568999999999999999999998877765543
No 292
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.50 E-value=0.0014 Score=64.31 Aligned_cols=28 Identities=0% Similarity=0.029 Sum_probs=25.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+.+.+|.|+|.+||||||+++.|++.++
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999987
No 293
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.49 E-value=0.0012 Score=63.50 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=24.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.++.+++++||+||||||++..||..+
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999999765
No 294
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.48 E-value=0.0022 Score=58.43 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=35.8
Q ss_pred HhhhcccCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556 8 LDRDTETDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEI 65 (298)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~i 65 (298)
.....+.+.+++..+..+.. +..+ .-+.|.||+|+|||+|++.++..++..+
T Consensus 22 ~~~~~~~i~g~~~~~~~l~~~l~~~------~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 22 IDEVGKVVVGQKYMINRLLIGICTG------GHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp HHHHTTTCCSCHHHHHHHHHHHHHT------CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred HHHhccceeCcHHHHHHHHHHHHcC------CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34445556666665555443 2222 2488999999999999999999987554
No 295
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.47 E-value=0.0013 Score=68.75 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISE 59 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~ 59 (298)
.+|++++|+|||||||||+++.++.
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999943
No 296
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.46 E-value=0.00068 Score=59.77 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=25.6
Q ss_pred EEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 40 VAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
+.|.||+|+|||++++.+++.++.+++..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~v~ 76 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMG 76 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence 779999999999999999998876665444
No 297
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.45 E-value=0.0013 Score=64.43 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=24.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
..+.+|+++|.+||||||+++.|++.++
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999998763
No 298
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.45 E-value=0.0011 Score=62.91 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=22.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKIS 58 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La 58 (298)
++|.++.|+||+|||||||+..++
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHH
Confidence 678999999999999999999775
No 299
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.43 E-value=0.0013 Score=64.47 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=25.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.+|.+++|+||||||||||++.+++..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999999875
No 300
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.0014 Score=62.36 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=30.8
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
++=+.+.||+|+|||.||+++|+..+..+++.+...+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l 218 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHh
Confidence 3447899999999999999999999988877665444
No 301
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.40 E-value=0.0018 Score=62.26 Aligned_cols=34 Identities=21% Similarity=0.556 Sum_probs=29.0
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+.-+.|.||+|+||||+++.||+.++..++..|.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 3458899999999999999999999987776654
No 302
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.39 E-value=0.002 Score=58.65 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=26.7
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeec
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISI 68 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~ 68 (298)
...+.|.||+|+|||++++.++..++..++..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 34589999999999999999999988665433
No 303
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.39 E-value=0.0025 Score=51.70 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.1
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.++...|+|+|++|||||||+..+.+.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455677999999999999999999763
No 304
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.38 E-value=0.0027 Score=59.45 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=30.9
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
+.-+.|.||+|+|||+|++.+|..++..++..+...+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 4678999999999999999999999888776654333
No 305
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.38 E-value=0.0018 Score=52.11 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.9
Q ss_pred EEEEECCCchhHHHHHHHHHhhC
Q psy8556 39 KVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l 61 (298)
-+.|.||+|+|||++++.++...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999998865
No 306
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.37 E-value=0.0014 Score=61.19 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=25.8
Q ss_pred cccccccccccCCCeEEEEECCCchhHHHHHHHHHh
Q psy8556 24 DFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISE 59 (298)
Q Consensus 24 ~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~ 59 (298)
|+..+......-.+.+.+|+||||||||+++-+|.=
T Consensus 12 nFr~~~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 12 NFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EETTEEEEEEECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccccceEEecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 344433333334457899999999999999998864
No 307
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.37 E-value=0.0016 Score=59.26 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.6
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+..+.|.||+|+|||||++.+++.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4568999999999999999999876
No 308
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.37 E-value=0.0025 Score=62.18 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=29.4
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+..+.|.||+|+||||+++.+++.++..++..+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 4679999999999999999999999877765554
No 309
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.36 E-value=0.0015 Score=56.60 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=24.6
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+|.+|+|.|+.||||||+++.|++.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998774
No 310
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.35 E-value=0.0013 Score=62.87 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=20.2
Q ss_pred EEEECCCchhHHHHHHHHHhhC
Q psy8556 40 VAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l 61 (298)
|+|+||||||||||++.|++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6999999999999999998764
No 311
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.35 E-value=0.0011 Score=60.46 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=18.8
Q ss_pred EEEECCCchhHHHHHHHHHhh
Q psy8556 40 VAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~ 60 (298)
|+|+||||||||||++.|++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 599999999999999999764
No 312
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.35 E-value=0.0016 Score=60.04 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=22.3
Q ss_pred EEEEECCCchhHHHHHHHHHhhCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.++|.||+|+|||||++.+++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999998873
No 313
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.35 E-value=0.0016 Score=60.20 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.++.+++|+|++|+|||||++.|++.+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998765
No 314
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.34 E-value=0.0017 Score=54.85 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.9
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+..+.|.||+|+||||+++.+++.+.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999999998764
No 315
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.33 E-value=0.0015 Score=54.15 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEECCCchhHHHHHHHHHhh
Q psy8556 39 KVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~ 60 (298)
-|+|+|++|||||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 316
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.32 E-value=0.0028 Score=52.21 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
++.--|+|+|++|||||||+..|.+.
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34556999999999999999999875
No 317
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.31 E-value=0.0018 Score=54.34 Aligned_cols=34 Identities=38% Similarity=0.366 Sum_probs=22.7
Q ss_pred cccccccCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
...++...+..-|+|+|++|+|||||++.|.+..
T Consensus 15 ~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 15 YFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp --------CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3444444556679999999999999999998653
No 318
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.29 E-value=0.0018 Score=62.83 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=26.6
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
-+.|+||+|+|||+|++.+++..+.++++.+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~is 81 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHIS 81 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence 3889999999999999999999887766544
No 319
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0018 Score=62.63 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=32.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
+.++=|.+.||+|+|||+|++++|+.++..+++.+...+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 345568899999999999999999999988876665444
No 320
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.28 E-value=0.0014 Score=61.35 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.1
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeE
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEI 65 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~i 65 (298)
..|+|+||+||||||+++.|++.++...
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3489999999999999999999876443
No 321
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.28 E-value=0.0026 Score=58.51 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=35.1
Q ss_pred cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEe
Q psy8556 28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVY 74 (298)
Q Consensus 28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy 74 (298)
++.....-.|.-++|+|+||+||||++..|.+. +..+++-|...+.
T Consensus 135 ~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~i~ 180 (314)
T 1ko7_A 135 LHGVLVDVYGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVEIR 180 (314)
T ss_dssp EESEEEEETTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEEEE
T ss_pred eeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEEEE
Confidence 344444456788999999999999999999875 6677766665554
No 322
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.0023 Score=61.25 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=32.0
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
.+.=|.+.||+|+|||.||+++|+.++..+++.+...+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 34558899999999999999999999988887765444
No 323
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.27 E-value=0.0021 Score=59.70 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=28.4
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+.-+.|.||+|+|||+|++.++..++..++..+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 3458899999999999999999999877765543
No 324
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.25 E-value=0.003 Score=50.75 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=22.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
++..-|+|+|++|||||||+..+.+.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 44567999999999999999999753
No 325
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.22 E-value=0.0033 Score=60.51 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=28.2
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhC-----CCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYI-----PCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l-----~~~iis~Ds 70 (298)
+|.+|+++|++||||||++..||..+ ...++.+|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 57899999999999999999998754 234566664
No 326
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.20 E-value=0.0019 Score=59.29 Aligned_cols=41 Identities=27% Similarity=0.522 Sum_probs=29.4
Q ss_pred hhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 18 QRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+...+..++. +..+.. +. ++|.||+|+||||+++.+++.+.
T Consensus 30 ~~~~~~~L~~~i~~g~~---~~-~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKL---PH-LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCC---CC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCC---ce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 4455555555 444432 22 89999999999999999999864
No 327
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.20 E-value=0.004 Score=59.69 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=29.3
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhC-CCeEeecCCceE
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYI-PCEIISIDSALV 73 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l-~~~iis~Ds~qv 73 (298)
.+.-+.|.||+|+|||+|++.+|..+ +..+++.+...+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 204 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence 34678999999999999999999998 666665554333
No 328
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.19 E-value=0.0022 Score=60.01 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
++|.++.|.||+|||||||+..++...
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999998764
No 329
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.18 E-value=0.0022 Score=59.16 Aligned_cols=27 Identities=33% Similarity=0.222 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
..+..+.|.||+|+||||+++.++..+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999875
No 330
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0031 Score=52.10 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=22.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.+...|+|+|++|||||||+..|.+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578999999999999999998753
No 331
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.17 E-value=0.0024 Score=61.12 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=24.7
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
++.+++|+|++||||||++..||..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999998763
No 332
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.11 E-value=0.0027 Score=61.01 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=29.1
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCC--CeEeecCCceE
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIP--CEIISIDSALV 73 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~--~~iis~Ds~qv 73 (298)
+.-+.|.||+|+|||++++.+|+.++ ..++..+...+
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~ 101 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence 34588999999999999999999987 56655554333
No 333
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.09 E-value=0.0021 Score=62.75 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPC 63 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~ 63 (298)
-.+.+.+|+|+||||||||+.+|...+++
T Consensus 58 f~~g~n~i~G~NGaGKS~lleAl~~llg~ 86 (517)
T 4ad8_A 58 LGGGFCAFTGETGAGKSIIVDALGLLLGG 86 (517)
T ss_dssp CCCSEEEEEESHHHHHHHHTHHHHHHTCS
T ss_pred cCCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 33449999999999999999999877653
No 334
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.06 E-value=0.0022 Score=53.97 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=24.9
Q ss_pred CchhhhhhccccccccccccCCCeEEEEECCCchhHHHHHHHHHh
Q psy8556 15 DPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISE 59 (298)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~ 59 (298)
||+-+.++.+++. ..+..-|+|+|++|+|||||++.+.+
T Consensus 9 ~~~~~~~l~~~~~------~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 9 YSGFSSVLQFLGL------YKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ----CHHHHHHTC------TTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHhhc------cCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 5555444444443 12334589999999999999999964
No 335
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.05 E-value=0.003 Score=54.74 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+...|+|+|++|+|||||++.|.+..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 34579999999999999999998643
No 336
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.05 E-value=0.0029 Score=52.76 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=21.0
Q ss_pred EEEEECCCchhHHHHHHHHHhhC
Q psy8556 39 KVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.+.|.||+|+|||++++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999865
No 337
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.01 E-value=0.004 Score=49.52 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEECCCchhHHHHHHHHHhhC
Q psy8556 39 KVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l 61 (298)
-|+|+|++|||||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998653
No 338
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.97 E-value=0.0043 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.9
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..-|+|+|++|||||||++.+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 339
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.97 E-value=0.0023 Score=58.20 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=23.9
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
++.+++++|++|+||||++..||..+
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999999999876
No 340
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.96 E-value=0.0028 Score=57.14 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=25.3
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEe
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEII 66 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~ii 66 (298)
+..+.|.||+|+|||++++.++..++..++
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456889999999999999999998775543
No 341
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.96 E-value=0.0037 Score=50.53 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.1
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..-|+|+|++|||||||++.+.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999864
No 342
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.96 E-value=0.0024 Score=60.93 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+.+..++|+|+||||||||++.|++..
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 445779999999999999999998763
No 343
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.95 E-value=0.0035 Score=62.24 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=25.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.++.+|.|+|++||||||+++.|++.++
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4567999999999999999999998875
No 344
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.95 E-value=0.0017 Score=52.18 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=21.0
Q ss_pred EEEEECCCchhHHHHHHHHHhhCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
-+.|.||+|+|||++++.++...+
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cEEEECCCCccHHHHHHHHHHhCC
Confidence 378999999999999999987654
No 345
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.94 E-value=0.0033 Score=52.94 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=21.8
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
++.+++|+||.||||||++..++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999997776543
No 346
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.94 E-value=0.0011 Score=68.53 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.8
Q ss_pred CCCeEEEEECCCchhHHHHHHH-HHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALK-ISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~-La~~ 60 (298)
++|++++|+|+||||||||++. |++.
T Consensus 521 ~~Geiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 521 PLGVMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp ESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred cCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence 6788999999999999999996 6544
No 347
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.93 E-value=0.0034 Score=60.14 Aligned_cols=35 Identities=29% Similarity=0.563 Sum_probs=28.3
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhC-----CCeEeecCC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYI-----PCEIISIDS 70 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l-----~~~iis~Ds 70 (298)
++.+|+|+|++||||||++..||..+ ...++++|.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 45789999999999999999999875 245666663
No 348
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.91 E-value=0.0034 Score=58.45 Aligned_cols=27 Identities=37% Similarity=0.514 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
++|.++.|.||+|||||||+..++...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998543
No 349
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.91 E-value=0.0032 Score=57.12 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.1
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
++..++|+|++|+|||||++.|.+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3457999999999999999999865
No 350
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.91 E-value=0.0035 Score=49.74 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=20.0
Q ss_pred EEEEECCCchhHHHHHHHHHhh
Q psy8556 39 KVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~ 60 (298)
-|+++|++|||||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 351
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.90 E-value=0.0043 Score=52.66 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.8
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+...++|+|++|||||||+..|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
No 352
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.88 E-value=0.0045 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.5
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|||||||++.+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 353
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.88 E-value=0.0031 Score=59.86 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=34.9
Q ss_pred hhcccCchhhhhhc---------cccccccccccCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 10 RDTETDPQQRQLTA---------DFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 10 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
..+-.||..+..+. .++-+.....-.+|+.++|+||+|+|||||+..|++..
T Consensus 138 ~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 138 NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34556776664443 11112223333668899999999999999999998764
No 354
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.87 E-value=0.0043 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.5
Q ss_pred CeEEEEECCCchhHHHHHHHHH
Q psy8556 37 KTKVAILGPTASGKSSVALKIS 58 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La 58 (298)
++.++|+|||||||||++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 5689999999999999766553
No 355
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.87 E-value=0.0047 Score=50.06 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.0
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..-|+|+|++|||||||+..+.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999764
No 356
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.86 E-value=0.0048 Score=57.07 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
++|.++.|+||+|||||||+..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999999875
No 357
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.85 E-value=0.0047 Score=49.98 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=21.6
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
+..-|+|+|++|||||||++.+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999865
No 358
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.85 E-value=0.029 Score=51.89 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=27.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC-----CCeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI-----PCEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l-----~~~iis~Ds 70 (298)
.+..+|+|+|++|+|||||+..|+..+ ...++..|.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 346789999999999999999998764 234555553
No 359
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.83 E-value=0.0046 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.8
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..-|+|+|++|+|||||++.+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999999754
No 360
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.83 E-value=0.0023 Score=61.69 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.++.+|+++|.+||||||+++.|++.++
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4467899999999999999999998764
No 361
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.82 E-value=0.0046 Score=49.51 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=21.0
Q ss_pred eEEEEECCCchhHHHHHHHHHhhC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
--|+|+|++|||||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458999999999999999998653
No 362
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.81 E-value=0.0055 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+...|+|+|++|||||||+..|.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998754
No 363
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=95.81 E-value=0.0015 Score=59.50 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=55.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccc-cccCcCccchHHH---
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLI-DIIEPTKSYSVIQ--- 110 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~-~~~~~~e~~s~~~--- 110 (298)
..+.+|+|+|| ||+||.+.|...++.. +..-.+.+|..|.+.|..+..||++ +.-.+......+.
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~--------~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE 171 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFPDK--------FGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIE 171 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCTTT--------EECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEE
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCccc--------eeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEE
Confidence 45678999999 7999999998876411 2233456788888999999998887 4221111111111
Q ss_pred -------HHHHHHHhhHHHhhcCCceEEEc
Q psy8556 111 -------FCEDALFSIKNILKKKKLPLLVG 133 (298)
Q Consensus 111 -------f~~~~~~~i~~i~~~~~~~IlvG 133 (298)
++....+.+.++...|+.+|+..
T Consensus 172 ~~~~~g~~YGt~~~~V~~~~~~G~~vildi 201 (295)
T 1kjw_A 172 AGQYNSHLYGTSVQSVREVAEQGKHCILDV 201 (295)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTCEEEECC
T ss_pred EEEEcCcEeeeeHHHHHHHHhcCCeEEEEe
Confidence 11123345667777888877753
No 364
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.81 E-value=0.0044 Score=49.61 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.8
Q ss_pred eEEEEECCCchhHHHHHHHHHh
Q psy8556 38 TKVAILGPTASGKSSVALKISE 59 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~ 59 (298)
.-|+|+|++|||||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999975
No 365
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.81 E-value=0.0054 Score=55.51 Aligned_cols=33 Identities=12% Similarity=0.254 Sum_probs=27.2
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISID 69 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~D 69 (298)
+.++.+.||+|+|||++++.+++.++..++..+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 467888899999999999999999886655433
No 366
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.80 E-value=0.0038 Score=57.34 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=23.9
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+..+.|.||+|+|||++++.+++.++
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999999876
No 367
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.80 E-value=0.0047 Score=49.37 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.8
Q ss_pred EEEEECCCchhHHHHHHHHHhh
Q psy8556 39 KVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~ 60 (298)
-|+|+|++|||||||+..+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999754
No 368
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=95.80 E-value=0.0063 Score=53.77 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=26.5
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCCCeEeec
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIPCEIISI 68 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~~~iis~ 68 (298)
.+|+|+|+.||||||++..|...++..++++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~ 32 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQL 32 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEec
Confidence 4799999999999999999998887666543
No 369
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.79 E-value=0.0056 Score=48.65 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.3
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
--|+|+|++|||||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999754
No 370
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.78 E-value=0.0025 Score=66.89 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=21.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKI 57 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~L 57 (298)
++|++++|+|+||||||||++.|
T Consensus 666 ~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 666 PLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp ESSSEEEEECSTTSSHHHHHTTT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHH
Confidence 67889999999999999999985
No 371
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.77 E-value=0.0066 Score=59.03 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=28.8
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+.-+.|.||+|+|||++++.++..++..++..+.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~ 271 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4568999999999999999999999877765543
No 372
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.75 E-value=0.0043 Score=52.00 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=23.5
Q ss_pred cccccccCCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.+..+|+....-|+|+|++|||||||+..+.+.
T Consensus 16 ~~~~~m~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 16 PRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp C-----CCEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCCCCCcccceEEEEECCCCCCHHHHHHHHHhC
Confidence 334455555567999999999999999999864
No 373
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.75 E-value=0.0022 Score=66.11 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=31.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
.++..+.|+||+|+|||||++.||+.++..++..+...+
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 547 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSS
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHh
Confidence 456678999999999999999999998877666554333
No 374
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.74 E-value=0.005 Score=52.95 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISE 59 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~ 59 (298)
++|.++.|.|++|+|||+|+..++-
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 5688999999999999999988763
No 375
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.74 E-value=0.005 Score=50.82 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.7
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
+...|+|+|++|||||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999764
No 376
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.73 E-value=0.0045 Score=49.58 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEECCCchhHHHHHHHHHhh
Q psy8556 39 KVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~ 60 (298)
-|+|+|++|||||||+..+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 377
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.73 E-value=0.0052 Score=49.03 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.2
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
--|+|+|++|||||||++.+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999763
No 378
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.73 E-value=0.0043 Score=51.15 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
++...|+|+|++|+|||||++.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45567999999999999999999754
No 379
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.73 E-value=0.0052 Score=49.26 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.5
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|||||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 380
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.72 E-value=0.0053 Score=49.67 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.4
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|||||||++.+.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999764
No 381
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.72 E-value=0.0049 Score=56.18 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.0
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+.-+.|.||+|+|||+|+..++..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998754
No 382
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.71 E-value=0.0057 Score=52.07 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+...|+|+|.+|||||||+..++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998764
No 383
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.68 E-value=0.0035 Score=61.90 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=24.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+.+.+|+|+|++||||||+++.|++.++
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999998765
No 384
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.68 E-value=0.0071 Score=49.12 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.0
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.--|+|+|++|+|||||+..+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 385
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.67 E-value=0.0049 Score=49.47 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEEECCCchhHHHHHHHHHhh
Q psy8556 39 KVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~ 60 (298)
-|+|+|++|||||||+..+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999743
No 386
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.65 E-value=0.005 Score=60.14 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=38.1
Q ss_pred HHHHhhhcccCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 5 KDVLDRDTETDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
..+.....+.+-+++..+..+.. ...+ .-+.|.||+|+|||+|++.|+..++
T Consensus 14 ~~l~~~l~~~ivGq~~~i~~l~~al~~~------~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 14 SRLSSSLEKGLYERSHAIRLCLLAALSG------ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHHHHT------CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcC------CeeEeecCchHHHHHHHHHHHHHHh
Confidence 44555667778777776665544 2222 2488999999999999999998874
No 387
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.65 E-value=0.0063 Score=49.49 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.4
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
+..-|+|+|++|||||||++.|.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3456899999999999999999864
No 388
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.65 E-value=0.0051 Score=58.87 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.6
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+..++|.||+|+|||||++.+++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999876
No 389
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.63 E-value=0.0065 Score=58.27 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.+|.+++|+|++|+|||||+..++...
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999998754
No 390
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.62 E-value=0.0049 Score=49.25 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=20.8
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..-|+|+|++|+|||||+..+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999863
No 391
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.62 E-value=0.0056 Score=50.95 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=20.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.+...|+|+|++|||||||++.+.+.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34456899999999999999999863
No 392
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.62 E-value=0.0056 Score=50.36 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.5
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
+..-|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999864
No 393
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.61 E-value=0.0059 Score=50.12 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.6
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..|+|+|++|||||||++.+.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999764
No 394
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.61 E-value=0.0071 Score=55.34 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
++|.++.|.||+|||||+|+..++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 568899999999999999999998753
No 395
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.61 E-value=0.0023 Score=66.95 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=21.3
Q ss_pred CCCeEEEEECCCchhHHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKI 57 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~L 57 (298)
++|++++|+|+||||||||++.|
T Consensus 648 ~~Geiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 648 PLGTFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp ESSSEEECCBCTTSSHHHHHTTT
T ss_pred cCCCEEEEEcCCCCCHHHHHHHH
Confidence 67889999999999999999985
No 396
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.61 E-value=0.0058 Score=51.74 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.6
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
....|+|+|++|||||||++.|.+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999764
No 397
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.59 E-value=0.0076 Score=49.15 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.0
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..-|+|+|++|||||||++.+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 398
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.58 E-value=0.0065 Score=53.41 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.1
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.-+.|.||+|+|||++++.++...+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3478999999999999999998764
No 399
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.58 E-value=0.0063 Score=54.00 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.7
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
...|+|+|++|||||||++.|.+..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998753
No 400
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.58 E-value=0.0079 Score=48.65 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=20.9
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.--|+|+|++|||||||+..+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999999754
No 401
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.57 E-value=0.0076 Score=51.29 Aligned_cols=27 Identities=26% Similarity=0.194 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.++.+++++||.||||||.+..++..+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 558899999999999999999888765
No 402
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.57 E-value=0.007 Score=58.34 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEECCCchhHHHHHHHHHhhC
Q psy8556 39 KVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l 61 (298)
-+.|+||+|+|||++++.|++.+
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999886
No 403
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.56 E-value=0.0079 Score=49.81 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=22.5
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.+.+.--|+|+|++|||||||++.+...
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3344567999999999999999888754
No 404
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.54 E-value=0.0065 Score=49.65 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.6
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|||||||+..+.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 405
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.54 E-value=0.0065 Score=49.99 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.8
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|||||||+..|++.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 406
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.54 E-value=0.0042 Score=49.73 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.5
Q ss_pred EEEEECCCchhHHHHHHHHHhh
Q psy8556 39 KVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~ 60 (298)
-|+|+|++|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4899999999999999999653
No 407
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.54 E-value=0.0081 Score=48.79 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.3
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
+..-|+|+|++|+|||||+..+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999754
No 408
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.54 E-value=0.0067 Score=48.38 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=19.2
Q ss_pred EEEECCCchhHHHHHHHHHhh
Q psy8556 40 VAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~ 60 (298)
|+|+|++|+|||||+..+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999754
No 409
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.53 E-value=0.0049 Score=49.86 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.2
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999653
No 410
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.53 E-value=0.0075 Score=49.71 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.1
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..-|+|+|++|+|||||++.|.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 411
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.52 E-value=0.0091 Score=58.34 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=27.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC-----CCeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI-----PCEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l-----~~~iis~Ds 70 (298)
.++.+|+|+|++||||||++..|+..+ ...++++|.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 457799999999999999999999543 245666663
No 412
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.0062 Score=51.26 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=24.2
Q ss_pred ccccCCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 31 GKLLFRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 31 ~~~~~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..++.+..-|+|+|++|||||||+..+.+.
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 19 YFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 344444567999999999999999999864
No 413
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.51 E-value=0.0068 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.6
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|+|||||++.|.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 414
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.50 E-value=0.0072 Score=52.78 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.++.++++.||+||||||++..++..+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999998887665
No 415
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.50 E-value=0.0076 Score=54.99 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.+|.++.|.|++|+|||||+..+|..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 67899999999999999999999854
No 416
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.49 E-value=0.0068 Score=49.47 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.5
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
--|+|+|++|||||||+..|.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 417
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.47 E-value=0.0063 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.3
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|||||||+..+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999753
No 418
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.47 E-value=0.0084 Score=49.80 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.9
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..-|+|+|++|||||||+..+.+.
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999754
No 419
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.47 E-value=0.008 Score=49.54 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=21.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.+..-|+|+|++|||||||++.+.+.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC
Confidence 34457999999999999999999753
No 420
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.44 E-value=0.006 Score=55.44 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=21.2
Q ss_pred EEEECCCchhHHHHHHHHHhhCC
Q psy8556 40 VAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+.|.||+|+||||+++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998764
No 421
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.42 E-value=0.0094 Score=61.40 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=30.6
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
+.++=|.|.||+|+|||+|++.+|+.++..++..+.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~ 271 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh
Confidence 345668999999999999999999999988776654
No 422
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.39 E-value=0.0058 Score=49.79 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=21.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKIS 58 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La 58 (298)
++..-|+|+|++|||||||+..+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 445679999999999999999986
No 423
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.39 E-value=0.01 Score=49.34 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=21.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.+..-|+|+|++|+|||||+..+.+.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34456999999999999999999864
No 424
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.38 E-value=0.0081 Score=48.72 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.8
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..-|+|+|++|||||||++.+.+.
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999764
No 425
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.37 E-value=0.0058 Score=50.01 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=19.5
Q ss_pred EEEEECCCchhHHHHHHHHHhh
Q psy8556 39 KVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~ 60 (298)
-|+|+|++|||||||+..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999753
No 426
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.35 E-value=0.0084 Score=51.43 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.5
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+++|+|=|+-||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999998774
No 427
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.35 E-value=0.006 Score=55.46 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=21.8
Q ss_pred EEEECCCchhHHHHHHHHHhhCC
Q psy8556 40 VAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 40 I~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+.|.||+|+|||++++.++..++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 88999999999999999999876
No 428
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.34 E-value=0.0088 Score=48.99 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=21.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
++..-|+|+|++|||||||++.+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999754
No 429
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.34 E-value=0.0082 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.7
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
+...|+|+|++|||||||+..|.+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999764
No 430
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.34 E-value=0.0086 Score=54.94 Aligned_cols=45 Identities=22% Similarity=0.176 Sum_probs=33.3
Q ss_pred cccccccCCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceE
Q psy8556 28 IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALV 73 (298)
Q Consensus 28 ~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qv 73 (298)
+++....-.|.-+.|.|+||+||||++..|.. .+..+++-|...+
T Consensus 138 ~H~~~v~~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~i 182 (312)
T 1knx_A 138 IHGVLLEVFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEI 182 (312)
T ss_dssp EEEEEEEETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEEE
T ss_pred eEEEEEEECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEEE
Confidence 44455556677899999999999999999865 4566776555444
No 431
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.33 E-value=0.0069 Score=56.65 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
++++|+|+||||||||++.|++.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 45999999999999999999864
No 432
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.31 E-value=0.0093 Score=48.32 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=20.9
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..-|+|+|++|+|||||+..+.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999999764
No 433
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.31 E-value=0.0086 Score=52.56 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.2
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
+...|+|+|.+|+|||||++.|.+.-
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC
Confidence 44679999999999999999997643
No 434
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.30 E-value=0.0077 Score=49.19 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|||||||++.+.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999764
No 435
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.30 E-value=0.0091 Score=57.20 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=27.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC----C--CeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI----P--CEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l----~--~~iis~Ds 70 (298)
.++.+|+++|++||||||++..||..+ + .-++.+|.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 457899999999999999999998554 2 34555663
No 436
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.29 E-value=0.0098 Score=48.77 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.8
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.-|+|+|++|+|||||++.+.+.+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4689999999999999998887664
No 437
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.29 E-value=0.0097 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
+...|+|+|++|+|||||+..|.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999753
No 438
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.0099 Score=54.68 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=24.9
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
..++..+.|.||+|+|||++++.++..+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3457789999999999999999999887
No 439
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.29 E-value=0.0061 Score=63.07 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=19.9
Q ss_pred CCCeEEEEECCCchhHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALK 56 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~ 56 (298)
+++++++|+|.||||||||+..
T Consensus 34 P~~~l~viTGvSGSGKSSLafd 55 (842)
T 2vf7_A 34 PRDALVVFTGVSGSGKSSLAFG 55 (842)
T ss_dssp ESSSEEEEESSTTSSHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 7789999999999999999853
No 440
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.29 E-value=0.0078 Score=54.77 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
++|.++.|.||+|||||+|+..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999864
No 441
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=95.28 E-value=0.0017 Score=59.06 Aligned_cols=87 Identities=17% Similarity=0.116 Sum_probs=54.8
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccC-cCccchH-----
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIE-PTKSYSV----- 108 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~-~~e~~s~----- 108 (298)
..++.|+|+|| ||+||...|....+.. +...++.+|..|...|..++.+|++...+ .......
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~--------f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE 166 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEYPDK--------FGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIE 166 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTT--------EECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhChhh--------ccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEE
Confidence 34567889999 4999999999887522 22345667889999999999998873221 0000000
Q ss_pred -----HHHHHHHHHhhHHHhhcCCceEEE
Q psy8556 109 -----IQFCEDALFSIKNILKKKKLPLLV 132 (298)
Q Consensus 109 -----~~f~~~~~~~i~~i~~~~~~~Ilv 132 (298)
+.++....+.+.++.+.|+.+|+.
T Consensus 167 ~a~~~gn~YGT~~~~V~~~~~~gk~viLd 195 (292)
T 3tvt_A 167 AGQYNDNLYGTSVASVREVAEKGKHCILD 195 (292)
T ss_dssp EEEETTEEEEEEHHHHHHHHHHTCEEEEC
T ss_pred EEEEccceeEEehHHHHHHHHcCCcEEEe
Confidence 111112244566777788888773
No 442
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.27 E-value=0.011 Score=49.32 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=21.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
++..-|+|+|++|+|||||+..+.+.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 44567999999999999999999764
No 443
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.25 E-value=0.01 Score=49.38 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.6
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
..-|+|+|++|+|||||+..|.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999997653
No 444
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.24 E-value=0.01 Score=54.36 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=34.2
Q ss_pred cCchhhhhhccccc-cccccccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 14 TDPQQRQLTADFRR-IRTGKLLFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
-||-+......+.. +..+. -+..+.+.||.|+|||++++.+++.+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~---~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGR---GHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTC---CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCC---cceeEEEECCCCchHHHHHHHHHHHHh
Confidence 37777766555544 33333 256799999999999999999999875
No 445
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.23 E-value=0.0065 Score=63.42 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=18.6
Q ss_pred CCCeEEEEECCCchhHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVA 54 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa 54 (298)
++|++++|+||||||||||+
T Consensus 608 ~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 608 PLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp ESSSEEEEECSTTSSHHHHH
T ss_pred cCCcEEEEEccCCCChhhhH
Confidence 66889999999999999997
No 446
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.23 E-value=0.0095 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.7
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|+|||||++.|.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 447
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.22 E-value=0.0084 Score=55.54 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.....++|+|++|+|||||++.|++..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346689999999999999999997643
No 448
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.20 E-value=0.0098 Score=48.36 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.3
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
--|+|+|++|+|||||+..+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999753
No 449
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.19 E-value=0.012 Score=48.54 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.0
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..-|+|+|++|||||||+..|.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 356899999999999999999763
No 450
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.19 E-value=0.0085 Score=54.44 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
++.-.|+|+|++|+|||||++.|.+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 44567999999999999999999864
No 451
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.18 E-value=0.0094 Score=55.74 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=20.6
Q ss_pred eEEEEECCCchhHHHHHHHHHhhC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.-++|+|||||||||+++.++..+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 347899999999999999998653
No 452
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.18 E-value=0.011 Score=56.50 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.3
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
...++|+|++|||||||++.|++..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999998764
No 453
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.17 E-value=0.011 Score=49.21 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=20.7
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..+..-|+|+|++|+|||||+..+.+.
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 344567899999999999999999753
No 454
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.16 E-value=0.011 Score=49.69 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.7
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
...|+|+|++|+|||||+..+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999864
No 455
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.0092 Score=49.46 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.0
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..-|+|+|++|+|||||++.+.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999764
No 456
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.14 E-value=0.0081 Score=48.89 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.4
Q ss_pred CeEEEEECCCchhHHHHHHHHHh
Q psy8556 37 KTKVAILGPTASGKSSVALKISE 59 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~ 59 (298)
..-|+|+|++|+|||||+..+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 34689999999999999999984
No 457
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.13 E-value=0.012 Score=48.44 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.0
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
++..-|+|+|++|||||||++.+.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999843
No 458
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.12 E-value=0.011 Score=48.90 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.5
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
--|+|+|++|+|||||+..+.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 459
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.10 E-value=0.015 Score=50.69 Aligned_cols=36 Identities=19% Similarity=0.471 Sum_probs=27.9
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC----CCeEeecCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI----PCEIISIDS 70 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l----~~~iis~Ds 70 (298)
.+..+++++|..||||||++..|+..+ ...++..|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 456899999999999999999998543 244566664
No 460
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.08 E-value=0.013 Score=48.96 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=21.2
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
....-|+|+|++|+|||||+..|.+.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 33457899999999999999999854
No 461
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.07 E-value=0.011 Score=54.16 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.2
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+..+.|.||+|+||||+++.+++.++
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998775
No 462
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.06 E-value=0.011 Score=60.23 Aligned_cols=31 Identities=39% Similarity=0.592 Sum_probs=25.0
Q ss_pred EEEEECCCchhHHHHHHHHHhhC---CCeEeecC
Q psy8556 39 KVAILGPTASGKSSVALKISEYI---PCEIISID 69 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l---~~~iis~D 69 (298)
.+.|+||+|+|||++++.|+..+ +..++..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRID 556 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence 58999999999999999999886 33444444
No 463
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.04 E-value=0.014 Score=59.39 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=27.5
Q ss_pred EEEEECCCchhHHHHHHHHHhhCCCeEeecCC
Q psy8556 39 KVAILGPTASGKSSVALKISEYIPCEIISIDS 70 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds 70 (298)
.+.|+||+|+|||++++.|+..++..++..|.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~ 521 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDM 521 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEec
Confidence 68999999999999999999998877665553
No 464
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=95.03 E-value=0.0079 Score=55.73 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=26.5
Q ss_pred ccCCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 33 LLFRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 33 ~~~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+..++.+|+|=|+=||||||+++.|+..++
T Consensus 3 ~~~~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 3 HMVTIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp CEEEEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345678999999999999999999998875
No 465
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.02 E-value=0.012 Score=48.64 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.5
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
+..-|+|+|++|+|||||++.+.+.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999999854
No 466
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.02 E-value=0.0098 Score=49.10 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=21.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.....|+|+|++|||||||+..+.+.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 33457999999999999999999653
No 467
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.02 E-value=0.012 Score=48.30 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.7
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|+|||||+..|.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999764
No 468
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.01 E-value=0.01 Score=54.88 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=20.6
Q ss_pred eEEEEECCCchhHHHHHHHHHh
Q psy8556 38 TKVAILGPTASGKSSVALKISE 59 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~ 59 (298)
+.|+|+|++|||||||++.|.+
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3799999999999999999998
No 469
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.00 E-value=0.01 Score=48.64 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=21.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.+..-|+|+|++|+|||||+..+.+.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 44567999999999999999999864
No 470
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.98 E-value=0.011 Score=49.50 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.5
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|+|||||+..|.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999764
No 471
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.98 E-value=0.012 Score=49.04 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.5
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|+|||||++.+.+.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 472
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.96 E-value=0.01 Score=49.05 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.7
Q ss_pred CeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 37 KTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.--|+|+|++|+|||||++.+.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 473
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.94 E-value=0.017 Score=52.06 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=23.0
Q ss_pred eEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 38 TKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+++|.||.|+|||||++.++...+
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 5899999999999999999998875
No 474
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.93 E-value=0.013 Score=48.66 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.4
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|||||||+..|.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999754
No 475
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.92 E-value=0.014 Score=59.51 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.3
Q ss_pred EEEEECCCchhHHHHHHHHHhhC
Q psy8556 39 KVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~l 61 (298)
-+.|+||+|+|||++++.||..+
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999986
No 476
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.91 E-value=0.012 Score=54.79 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
+++.++.|.||+|||||||+..++..
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999998864
No 477
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.90 E-value=0.013 Score=48.37 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.3
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.--|+|+|++|+|||||++.+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999864
No 478
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=94.90 E-value=0.029 Score=52.91 Aligned_cols=65 Identities=25% Similarity=0.271 Sum_probs=46.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCED 114 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~ 114 (298)
..+.+|+|+||+| +||.+.|....+....+ .|..|...|..+..+|++
T Consensus 230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~------------~tr~pR~gE~dG~~Y~Fv----------------- 277 (391)
T 3tsz_A 230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQI------------AKSEPRDAGTDQRSSGII----------------- 277 (391)
T ss_dssp SSCCCEEEESTTH---HHHHHHHHHHCTTTEEE------------CCCCCCCSSSCCC--CCC-----------------
T ss_pred CCCCEEEEECCCH---HHHHHHHHhhCcccccc------------ccCCCCCcccCCccCCcC-----------------
Confidence 4678899999998 89999998876522211 345677778888888865
Q ss_pred HHHhhHHHhhcCCceEE
Q psy8556 115 ALFSIKNILKKKKLPLL 131 (298)
Q Consensus 115 ~~~~i~~i~~~~~~~Il 131 (298)
....+.++.+.|+.+|+
T Consensus 278 ~~~~V~~~~~~Gk~~iL 294 (391)
T 3tsz_A 278 RLHTIKQIIDQDKHALL 294 (391)
T ss_dssp CHHHHHHHHTTTCEEEE
T ss_pred cHHHHHHHHHcCCEEEE
Confidence 24466788889999888
No 479
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.87 E-value=0.014 Score=52.26 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.8
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
..|+|+|++|||||||++.|.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999864
No 480
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.87 E-value=0.01 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.6
Q ss_pred eEEEEECCCchhHHHHHHHHHh
Q psy8556 38 TKVAILGPTASGKSSVALKISE 59 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~ 59 (298)
.-|+|+|++|+|||||++.|.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999964
No 481
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.85 E-value=0.012 Score=49.65 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.4
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|+|||||++.+.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999764
No 482
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.84 E-value=0.016 Score=47.92 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=20.9
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.--|+|+|++|+|||||+..+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346899999999999999999764
No 483
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.83 E-value=0.012 Score=54.33 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.++.++.|.||+|+|||+|+..++..
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34567899999999999999999865
No 484
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.80 E-value=0.012 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.2
Q ss_pred CeEEEEECCCchhHHHHHHHHHh
Q psy8556 37 KTKVAILGPTASGKSSVALKISE 59 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~ 59 (298)
..-|+|+|++|||||||++.+++
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999999864
No 485
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.79 E-value=0.021 Score=49.10 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=24.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
.+..+|+|+|..||||+|++..+...++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g 36 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLG 36 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcC
Confidence 4567999999999999999999988664
No 486
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.78 E-value=0.0081 Score=62.71 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=19.7
Q ss_pred CCCeEEEEECCCchhHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALK 56 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~ 56 (298)
++.++++|+|+||||||+||-.
T Consensus 22 p~~~l~v~tG~SGSGKSsLafd 43 (916)
T 3pih_A 22 PKNRLVVITGVSGSGKSSLAMD 43 (916)
T ss_dssp ETTSEEEEEESTTSSSHHHHTT
T ss_pred CCCcEEEEECCCCCcHHHHHHH
Confidence 7788999999999999999743
No 487
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.76 E-value=0.019 Score=47.65 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=22.1
Q ss_pred cCCCeEEEEECCCchhHHHHHHHHHh
Q psy8556 34 LFRKTKVAILGPTASGKSSVALKISE 59 (298)
Q Consensus 34 ~~kg~iI~I~GpTGSGKSTLa~~La~ 59 (298)
.++..-|+|+|++|||||||+..+..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 34566799999999999999999964
No 488
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.75 E-value=0.012 Score=49.29 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=19.9
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|||||||++.+.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999743
No 489
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=94.73 E-value=0.03 Score=54.10 Aligned_cols=92 Identities=20% Similarity=0.113 Sum_probs=48.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCCCeEeecCCceEeccccCCCCCCCHHHHcccccccccccCcCccchHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCED 114 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~~~iis~Ds~qvy~g~~i~t~kp~~~e~~~v~~~l~~~~~~~e~~s~~~f~~~ 114 (298)
..+.+|+|+||+|+| |.+.|....+....+ .+|. |...|..++.+|+ .
T Consensus 222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s-----------~~TR-pR~gE~dG~~Y~F-----------------T 269 (468)
T 3shw_A 222 GFLRPVTIFGPIADV---AREKLAREEPDIYQI-----------AKSE-PRDAGTDQRSSGI-----------------I 269 (468)
T ss_dssp SSCCCEEEESTTHHH---HHHHHHHHCTTTEEE-----------CCCB-C----------CB-----------------C
T ss_pred CCCCEEEEECCCHHH---HHHHHHHhCCCceee-----------ecCC-CCCcccccccCCc-----------------c
Confidence 456789999999999 888887776522211 1255 7788888887775 1
Q ss_pred HHHhhHHHhhcCCceEEE---chhHHHHHHHHcc--CCCCCCCCHHHHH
Q psy8556 115 ALFSIKNILKKKKLPLLV---GGTMLYFKALRDG--INKLPPANLKLRT 158 (298)
Q Consensus 115 ~~~~i~~i~~~~~~~Ilv---GGt~~y~~~ll~~--~~~~p~~d~~lr~ 158 (298)
..+.++++.+.|+.+|+. -|..-.-.+.+.. ++..||+-.+|++
T Consensus 270 s~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~ 318 (468)
T 3shw_A 270 RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKT 318 (468)
T ss_dssp CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHH
T ss_pred cHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHH
Confidence 334566788899999883 2222211122222 2233777666654
No 490
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.72 E-value=0.011 Score=55.17 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.4
Q ss_pred EEEEECCCchhHHHHHHHHHhh
Q psy8556 39 KVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~ 60 (298)
-|+|+|++|+|||||++.|.+.
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4799999999999999998653
No 491
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=94.72 E-value=0.0096 Score=62.47 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.8
Q ss_pred CCCeEEEEECCCchhHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALK 56 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~ 56 (298)
++.++++|+|+|||||||||-.
T Consensus 44 P~~~lvv~tG~SGSGKSSLafd 65 (993)
T 2ygr_A 44 PRDALIVFTGLSGSGKSSLAFD 65 (993)
T ss_dssp ESSSEEEEEESTTSSHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHH
Confidence 7789999999999999999753
No 492
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.016 Score=49.37 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.6
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|+|||||+..|.+.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 493
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.71 E-value=0.014 Score=51.69 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=20.2
Q ss_pred EEEEECCCchhHHHHHHHHHhh
Q psy8556 39 KVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 39 iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.|+|+|++|||||||++.|.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999865
No 494
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.70 E-value=0.011 Score=48.85 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.1
Q ss_pred CCeEEEEECCCchhHHHHHHHHHhh
Q psy8556 36 RKTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
+..-|+|+|++|||||||++.+.+.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999754
No 495
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=94.68 E-value=0.018 Score=57.96 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=24.7
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhCC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYIP 62 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l~ 62 (298)
+++..++|+|++|+|||||+..|++..+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 4578899999999999999999997654
No 496
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=94.68 E-value=0.0099 Score=62.18 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=19.7
Q ss_pred CCCeEEEEECCCchhHHHHHHH
Q psy8556 35 FRKTKVAILGPTASGKSSVALK 56 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~ 56 (298)
++.++++|+|+||||||||+-.
T Consensus 42 P~~~lvv~tG~SGSGKSSLafd 63 (972)
T 2r6f_A 42 PRGKLVVLTGLSGSGKSSLAFD 63 (972)
T ss_dssp ETTSEEEEEESTTSSHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHH
Confidence 7789999999999999999753
No 497
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.70 E-value=0.0056 Score=51.25 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=20.3
Q ss_pred CCeEEEEECCCchhHHHHHHHHHh
Q psy8556 36 RKTKVAILGPTASGKSSVALKISE 59 (298)
Q Consensus 36 kg~iI~I~GpTGSGKSTLa~~La~ 59 (298)
+..-|+|+|++|+|||||+..+..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 345689999999999999988864
No 498
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.67 E-value=0.0093 Score=48.63 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=9.8
Q ss_pred eEEEEECCCchhHHHHHHHHHhh
Q psy8556 38 TKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 38 ~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
.-|+|+|++|||||||+..+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998753
No 499
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.67 E-value=0.017 Score=55.25 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCchhHHHHHHHHHhhC
Q psy8556 35 FRKTKVAILGPTASGKSSVALKISEYI 61 (298)
Q Consensus 35 ~kg~iI~I~GpTGSGKSTLa~~La~~l 61 (298)
.+|.++.|+|++|+|||||+..+|...
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999998653
No 500
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.67 E-value=0.014 Score=51.59 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.1
Q ss_pred CeEEEEECCCchhHHHHHHHHHhh
Q psy8556 37 KTKVAILGPTASGKSSVALKISEY 60 (298)
Q Consensus 37 g~iI~I~GpTGSGKSTLa~~La~~ 60 (298)
...|+|+|++|||||||++.|.+.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999864
Done!