RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8556
(298 letters)
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 316 bits (812), Expect = e-108
Identities = 104/307 (33%), Positives = 169/307 (55%), Gaps = 46/307 (14%)
Query: 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHH 95
+ ++GPTASGK+++A+++ + +P E+IS+DSAL+Y MDIGT KP+ E PH
Sbjct: 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHR 68
Query: 96 LIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLK 155
L+DI +P+++YS F DAL + +I ++PLLVGGTMLYFKAL +G++ LP A+ +
Sbjct: 69 LLDIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPE 128
Query: 156 LRTKFNIDINKYGISFLYDKLKLLDPVTANQ----------------------------- 186
+R + + G L+ +L+ +DPV A +
Sbjct: 129 VRARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQT 188
Query: 187 ---------------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSMK 231
P++R +LH+RI RF +ML EV+ + + +L+ +LPS++
Sbjct: 189 SGDALPYQVHQFAIAPASRELLHQRIEQRFHQMLASGFE-AEVRALFARGDLHTDLPSIR 247
Query: 232 CIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCV-QKI 290
C+GYRQ W Y++G I + + + + ATRQLAK+Q+TWLR +D + ++
Sbjct: 248 CVGYRQMWSYLEGEISYDEMVYRGVCATRQLAKRQITWLRGWEGVHWLDSEKPEQARDEV 307
Query: 291 LNLIKDI 297
L ++ I
Sbjct: 308 LQVVGAI 314
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 316 bits (812), Expect = e-108
Identities = 105/313 (33%), Positives = 168/313 (53%), Gaps = 56/313 (17%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
+ ++GPTA+GK+ +A+ +++ +PCE+IS+DSAL+Y MDIGT KPS PH LIDI
Sbjct: 8 IFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDI 67
Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
+P +SYS +F DAL ++ + ++PLLVGGTMLY+KAL +G+ +P A+ ++R
Sbjct: 68 RDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAA 127
Query: 160 FNIDINKYGISFLYDKLKLLD---------------------------PVTANQ------ 186
+ G L+ +L +D ++ +
Sbjct: 128 IEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQRLMRALEVYRLGGVSMSDLRRRQSAE 187
Query: 187 ----------------------PSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLN 224
P R +LH RI+ RF++ML+Q I EV+ + + +L+
Sbjct: 188 KADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGF-IAEVEALHARSDLH 246
Query: 225 LNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEK 284
LPS++ +GYRQ W+Y+DG + + E+ IIATRQLAK+Q TWLR+ + +D L
Sbjct: 247 AGLPSIRAVGYRQVWDYLDGKLSYAEMTERGIIATRQLAKRQFTWLRSWSHLHWMDSLAG 306
Query: 285 NCVQKILNLIKDI 297
+ + + L +K +
Sbjct: 307 DNLPRALRYLKTV 319
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 288 bits (739), Expect = 3e-97
Identities = 94/307 (30%), Positives = 151/307 (49%), Gaps = 49/307 (15%)
Query: 37 KTKV-AILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHH 95
K K+ AI+GPTA GK+ ++ +++ + E+IS DS VY MDIGT K + E + PHH
Sbjct: 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHH 61
Query: 96 LIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLP-PANL 154
LIDI +P++S+SV F + A I I ++ +LP LVGGT LY A+ N A+
Sbjct: 62 LIDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADE 121
Query: 155 KLRTKFNIDINKYGISFLYDKLKLLDPVTANQ--PSN----------------------- 189
R + +N YG+ L+DKL +DP A P+N
Sbjct: 122 DYRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRRVIRALEIIKLTGKTVTEQAR 181
Query: 190 -------------------RHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLPSM 230
R +L+ RI+ R +M+++ L+ +E KK+ + + S+
Sbjct: 182 HEEETPSPYNLVMIGLTMERDVLYDRINRRVDQMVEEGLI-DEAKKLYDRG--IRDCQSV 238
Query: 231 KCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQKI 290
+ IGY++ ++Y+DG + + +R+ AK+QLTW RN D + + +KI
Sbjct: 239 QAIGYKEMYDYLDGNVTLEEAIDTLKRNSRRYAKRQLTWFRNKANVTWFDMTDVDFDKKI 298
Query: 291 LNLIKDI 297
+ + I
Sbjct: 299 MEIHNFI 305
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 270 bits (694), Expect = 4e-90
Identities = 86/308 (27%), Positives = 141/308 (45%), Gaps = 51/308 (16%)
Query: 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHH 95
+ + I+GPTASGK+ +++++++ EIIS DS VY MDIGT K + E E PH+
Sbjct: 6 KPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHY 65
Query: 96 LIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGIN---KLPPA 152
+IDI+ P S+S +F + A IK+I ++ K+P++ GGT LY ++L +
Sbjct: 66 MIDILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISE 125
Query: 153 NLKLRTKFNI-DINKYGISFLYDKLKLLDPVTANQ--PSN-------------------- 189
+ + K + ++ + L++ L D +A P+N
Sbjct: 126 DKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSS 185
Query: 190 ---------------------RHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLP 228
R L+ RI+ R ML L NEV+ + ++
Sbjct: 186 RKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHG-LFNEVQHLVEQG--FEASQ 242
Query: 229 SMKCIGYRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQLTWLRNMNEKITIDCLEKNCVQ 288
SM+ IGY++ I G I EK +RQ AK+QLTW +N ++ E+ +Q
Sbjct: 243 SMQAIGYKELVPVIKGNISMENAVEKLKQHSRQYAKRQLTWFKNKMNVHWLN-KERMSLQ 301
Query: 289 KILNLIKD 296
+L+ I
Sbjct: 302 MMLDEITT 309
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 269 bits (690), Expect = 9e-89
Identities = 70/288 (24%), Positives = 132/288 (45%), Gaps = 55/288 (19%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
+ I G T GKS +++++++ E+I+ DS VY D+ I TNK + ERE PHH+++
Sbjct: 5 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNH 64
Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
++ ++ Y +F + + +I++I ++ K+P++VGGT Y + L + + KL K
Sbjct: 65 VDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRK 124
Query: 160 FNIDINKYGISFLYDKLKLLDPVTANQ--PSN---------------------------- 189
+ +Y+ L DP A + P++
Sbjct: 125 QLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQKIT 184
Query: 190 -------------RHILHKRISDRFKKMLDQDLLINEVKKIRKKWNLNLNLP------SM 230
L +R+ DR ML++ + E+K++ + ++ N P
Sbjct: 185 LKFDTLFLWLYSKPEPLFQRLDDRVDDMLERG-ALQEIKQLYEYYSQNKFTPEQCENGVW 243
Query: 231 KCIGYRQTWEYIDGLIDRNTLK-----EKSIIATRQLAKQQLTWLRNM 273
+ IG+++ ++ G D NT+K E+ TRQ AK+Q+ W++ M
Sbjct: 244 QVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKM 291
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 226 bits (578), Expect = 7e-73
Identities = 57/263 (21%), Positives = 109/263 (41%), Gaps = 36/263 (13%)
Query: 36 RKTKV-AILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
RK K+ ++G T +GKS +++ ++ + P E+I+ D VY +DI TNK S+ +R PH
Sbjct: 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPH 97
Query: 95 HLIDIIEPT-KSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPAN 153
HL+ ++P + F A ++ I ++KLP+LVGG+ + AL + +
Sbjct: 98 HLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVD--RFDSSG 155
Query: 154 LKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINE 213
+ + + + + YD L V + +L ++ R ML+ + +E
Sbjct: 156 PGVFEEGSHSVVSSEL--RYDCCFLWVDV------SVKVLTDYLAKRVDDMLELGMF-DE 206
Query: 214 VKKIRKKWNLNLNLPS------MKCIGYRQTWEYIDGLIDRNTLK--------------- 252
+ + + + + S K IG + Y + +
Sbjct: 207 LAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEE 266
Query: 253 --EKSIIATRQLAKQQLTWLRNM 273
T LAK+Q+ + +
Sbjct: 267 AVRAIKENTCHLAKRQIGKILRL 289
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis;
HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB:
2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 175 bits (444), Expect = 8e-54
Identities = 27/154 (17%), Positives = 59/154 (38%), Gaps = 4/154 (2%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
I GPT SGK+ +A++I++ ++++D + G+ +P E + T +D
Sbjct: 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDS 63
Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
T+ + L + K ++ +L GG++ + + K P +
Sbjct: 64 RPLTEGILDAESAHRRLIFEVDWRKSEEGLILEGGSISLL----NCMAKSPFWRSGFQWH 119
Query: 160 FNIDINKYGISFLYDKLKLLDPVTANQPSNRHIL 193
+FL + + + A + +L
Sbjct: 120 VKRLRLGDSDAFLTRAKQRVAEMFAIREDRPSLL 153
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 2e-09
Identities = 62/342 (18%), Positives = 100/342 (29%), Gaps = 98/342 (28%)
Query: 3 DVKDVLDRDTET-DPQQRQLTADFRRIRTGKLLFRKTK-VAILGPTASGKSSVAL----- 55
+ +D L D + + ++R L R K V I G SGK+ VAL
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 56 -KISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID---IIEPTKSYSVIQF 111
K+ + +I ++ ++E + ID S ++
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPET-------VLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 112 CEDALFSIKNILKKKKLP--LLVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGI 169
++ +LK K LLV L + + N K FN+
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLV---------LLN-VQ-----NAKAWNAFNL------- 264
Query: 170 SFLYDKLKLLDPVT------ANQPSNRHILHKRISDRFKKMLDQDLLINEVKKIRKKWNL 223
K+L +T + S H + L D EVK + K+ L
Sbjct: 265 -----SCKIL--LTTRFKQVTDFLSAATTTHISLDH-HSMTLTPD----EVKSLLLKY-L 311
Query: 224 NLN---LPSMKC---------IG-----YRQTWEYIDGLIDRNTLKEKSIIATRQLAKQQ 266
+ LP I TW+ N K +II + L +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIES-SLNVLE 367
Query: 267 LTWLRNM---------NEKITIDCLE-------KNCVQKILN 292
R M + I L K+ V ++N
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Score = 47.9 bits (113), Expect = 2e-06
Identities = 52/325 (16%), Positives = 90/325 (27%), Gaps = 99/325 (30%)
Query: 2 RD--VKDVLDRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISE 59
R V D L T T + K L K L L +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLK----YLDCRPQDLPREVLTTN- 326
Query: 60 YIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSI 119
P +SI + + + + + H D K ++I+ + L
Sbjct: 327 --PR-RLSIIAESI-------RDGLATWDN--WKHVNCD-----KLTTIIESSLNVLEP- 368
Query: 120 KNILKKKKLPLLVGGTMLYFKAL---RDGINKLPPANL-----------------KLRTK 159
+K F L + +P L KL
Sbjct: 369 -AEYRK------------MFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 160 FNIDIN----KYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINEVK 215
++ I +Y +LK+ + N + LH+ I D +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKV-------KLENEYALHRSIVDHYN------------- 454
Query: 216 KIRKKWNLNLNLPSMKCIGYRQTW-EYIDG--LIDRNTLKEKSIIATRQLAKQQLTWLRN 272
I K ++ + +L Y + +I G L +N + + R + +L
Sbjct: 455 -IPKTFDSD-DLIPPYLDQY---FYSHI-GHHL--KNIEHPERMTLFRMVF-LDFRFLEQ 505
Query: 273 MNEKITIDCLEKNCVQKILNLIKDI 297
KI D N ILN ++ +
Sbjct: 506 ---KIRHDSTAWNASGSILNTLQQL 527
Score = 46.0 bits (108), Expect = 1e-05
Identities = 40/242 (16%), Positives = 76/242 (31%), Gaps = 60/242 (24%)
Query: 77 MDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKK------KLPL 130
MD T + ++I ++ C+D K+IL K+
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFD-------CKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 131 LVGGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPSNR 190
V GT+ F L ++ KF ++ + FL +K QPS
Sbjct: 60 AVSGTLRLFWTLLS-------KQEEMVQKFVEEVLRINYKFLMSPIK----TEQRQPSMM 108
Query: 191 HILHKRISDR-------FKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYID 243
++ DR F K V +++ L L ++ ID
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKY--------NVSRLQPYLKLRQALLELR----PAKNVLID 156
Query: 244 GLIDRNTLKEKSIIATRQLAKQQLT--------WLRNMNEKITIDCLEKNCVQKILNLIK 295
G++ K+ +A ++ WL N+ + + + ++ + L+
Sbjct: 157 GVLGSG----KTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETV----LEMLQKLLY 207
Query: 296 DI 297
I
Sbjct: 208 QI 209
Score = 39.1 bits (90), Expect = 0.002
Identities = 40/291 (13%), Positives = 86/291 (29%), Gaps = 84/291 (28%)
Query: 3 DVKDVLD--RDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEY 60
D KDV D + + + + + LF L + + V +
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-----WTL--LSKQEEMVQKFVE-- 84
Query: 61 IPCEIISIDSALVYCDMDIGTNKPSIIEREITPHH--LIDIIEPTKSYSVIQFCEDALFS 118
E++ I+ + + +PS++ R L + + Y+V +
Sbjct: 85 ---EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLK 139
Query: 119 IKNILKK-KKLPLLV-------GGTMLYFKALRDGINKLPPANLKLRTKFNIDINKYGIS 170
++ L + + ++ G T + K++ K + I + ++
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS---------YKVQCKMDFKI--FWLN 188
Query: 171 F--------LYDKLKLL----DPV-------TANQPSNRHILHKRISDRFK-KMLDQDLL 210
+ + L+ L DP ++N H + + K K + LL
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 211 I-NEVKKIRKKWNLNLNLPSMKCIGYRQTWEYIDGLIDRNTLKEKSIIATR 260
+ V N + W + L K ++ TR
Sbjct: 249 VLLNV------QN-------------AKAWNAFN-------LSCKILLTTR 273
Score = 37.5 bits (86), Expect = 0.005
Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 56/246 (22%)
Query: 76 DMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDAL-----FSIKNILKKKKLPL 130
++D + L + + V +F E+ L F + I +++ P
Sbjct: 50 EIDHIIMSKDAVSGT---LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 131 LVGGTMLYFKA---LRDGINKLPPANLKLRTKFNIDINKYGISFLYDKLKLLDP------ 181
++ T +Y + L + N+ R + K L L L P
Sbjct: 107 MM--TRMYIEQRDRLYNDNQVFAKYNVS-RLQ---PYLK-----LRQALLELRPAKNVLI 155
Query: 182 ---------VTANQPSNRHILHKRISDR-----FKKMLDQDLLINEVKKIRKKWNLNLNL 227
A + + ++ + K + ++ + L +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML------QKLLYQI 209
Query: 228 PSMKCIGYRQTWEYIDGLIDRNTLKE--KSIIATRQLAKQQLTWLRNMNEKITIDCLEKN 285
+ + ++++ + ++ ++ + L L N+ + +
Sbjct: 210 DPNWTSRSDHSSNIKLRI---HSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLS 265
Query: 286 CVQKIL 291
C KIL
Sbjct: 266 C--KIL 269
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 6e-04
Identities = 41/207 (19%), Positives = 74/207 (35%), Gaps = 71/207 (34%)
Query: 5 KDVLDRDTE-TDPQQRQLT----ADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISE 59
K +L T+ T Q LT A F +++ L+ A G S + E
Sbjct: 1723 KGLLSA-TQFT---QPALTLMEKAAFEDLKSKGLIPADATFA-------GHS-----LGE 1766
Query: 60 Y--IPC--EIISIDSA--LVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKS-YSVI--- 109
Y + +++SI+S +V+ R +T + E +S Y +I
Sbjct: 1767 YAALASLADVMSIESLVEVVF-------------YRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 110 ------QFCEDALFSIKNILKKKKLPLL-------------VGGTMLYFKALRDGINKLP 150
F ++AL + + K+ L+ G + +AL N L
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL---RALDTVTNVL- 1869
Query: 151 PANLKLRTKFNIDINKYGISFLYDKLK 177
+KL+ IDI + S ++++
Sbjct: 1870 -NFIKLQ---KIDIIELQKSLSLEEVE 1892
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 38.9 bits (91), Expect = 8e-04
Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 19/121 (15%)
Query: 40 VAILGPTASGKSSVALKISEYI-----PCEIISIDSALVYCDMDIGTNKPSIIEREITP- 93
+ I G + SGK+++A ++S+ + + +D + + + E
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD--HIVERAKRYHTGNEEWFEYYYL 82
Query: 94 --------HHLIDIIEPTKS--YSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALR 143
H L ++ + D L + +++ G L K R
Sbjct: 83 QWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDM-IMIEGVFLQRKEWR 141
Query: 144 D 144
Sbjct: 142 P 142
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 37.1 bits (86), Expect = 0.003
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 40 VAILGPTASGKSSVALKISEYIP-CEIISIDS 70
+ I G T SGK+++A + +++P C +IS D
Sbjct: 24 IGISGVTNSGKTTLAKNLQKHLPNCSVISQDD 55
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 35.7 bits (82), Expect = 0.008
Identities = 6/34 (17%), Positives = 18/34 (52%)
Query: 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISID 69
+ + G A+GK++++ ++ + ++S D
Sbjct: 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 34.5 bits (80), Expect = 0.023
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 40 VAILGPTASGKSSVALKISEYIP--CEIISIDS 70
+ I G TASGK+++A ++ + ++ +D
Sbjct: 9 IGIAGGTASGKTTLAQALARTLGERVALLPMDH 41
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 33.5 bits (76), Expect = 0.051
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIERE 90
+ + G SGKS++A ++ + S ++ + G P + +
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSH 62
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 33.5 bits (76), Expect = 0.053
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
Query: 9 DRDTETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISI 68
D TE Q +T + V ++G + SGK+++A +++ E
Sbjct: 12 DLGTENLYFQSMMTGE-----------PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEA 60
Query: 69 DS 70
D+
Sbjct: 61 DA 62
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 32.8 bits (75), Expect = 0.077
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 40 VAILGPTASGKSSVALKISEYI-----PCEIISIDS 70
VA+ G SGKS+++ ++ + P E++ +D
Sbjct: 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 32.1 bits (73), Expect = 0.15
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 10/41 (24%)
Query: 40 VAILGPTASGKSSVALKISEYIP----------CEIISIDS 70
+ + G TASGKS+V KI E + I+S D
Sbjct: 28 IGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 32.1 bits (73), Expect = 0.17
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 10/41 (24%)
Query: 40 VAILGPTASGKSSVALKISEYIPCE----------IISIDS 70
+ + G TASGKSSV KI + + I+S DS
Sbjct: 25 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS 65
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 0.26
Identities = 25/134 (18%), Positives = 39/134 (29%), Gaps = 33/134 (24%)
Query: 76 DMDIGTNKPSIIEREITPHHLIDIIEPT----------KSYSVIQFCEDALFSIKNILKK 125
D D+ + E I H I +IEP + + ED +
Sbjct: 887 DKDV----KAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETA 942
Query: 126 KKLPLL---------VGGTMLYFKALRDGINKLPPANLKLRTKF------NIDINKYGIS 170
++ + T Y L G P L+ + YGIS
Sbjct: 943 EQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGIS 1002
Query: 171 FLYDK-LKLLDPVT 183
D + +DP+T
Sbjct: 1003 ---DDIISQVDPIT 1013
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 31.6 bits (71), Expect = 0.29
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 8/68 (11%)
Query: 40 VAILGPTASGKSSVALKI-----SEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH 94
+++ G + +G S+V E + I D+ + + K + R
Sbjct: 8 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA---FHRFNRADMKAELDRRYAAGD 64
Query: 95 HLIDIIEP 102
Sbjct: 65 ATFSHFSY 72
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 30.1 bits (69), Expect = 0.59
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 30 TGKLLFRKTKVAILGPTASGKSSVA 54
G ++ VA+ GP +GKSSV+
Sbjct: 2 PGSMVSGSLVVAVDGPAGTGKSSVS 26
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 30.0 bits (67), Expect = 0.67
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISID---SALVYCDMDIGTNKPSIIEREITPHHL 96
++G + SGKS+VA +++ + + D M G + +R+ L
Sbjct: 11 YVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEP-LNDDDRKPWLQAL 69
Query: 97 IDIIE 101
D
Sbjct: 70 NDAAF 74
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 30.0 bits (67), Expect = 0.72
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 37 KTKVAILGPTASGKSSVALKISEYIPCEIISID---SALVYCDMDIGT 81
+ ++G + SGKSSV I+E I D M G
Sbjct: 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGI 65
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 29.7 bits (67), Expect = 0.74
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDS 70
T + + GP KS+VA K+S+ + II S
Sbjct: 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 29.7 bits (68), Expect = 0.85
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 36 RKTKVAILGPTASGKSSVA 54
+ ++AI GP +SGKS+VA
Sbjct: 15 KTIQIAIDGPASSGKSTVA 33
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 29.7 bits (68), Expect = 0.91
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 40 VAILGPTASGKSSVA 54
V I GP+ASGKSSVA
Sbjct: 5 VTIDGPSASGKSSVA 19
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis,
glycoprotein, paramyxovirus, envelope protein, cell
surface receptor, hendra, virion; HET: NAG; 1.80A {Homo
sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Length = 140
Score = 29.2 bits (65), Expect = 0.97
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 59 EYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVI 109
+ C I ++ L+ C K +I +E +P+ + K Y +I
Sbjct: 58 QADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKDYYII 108
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4;
2.30A {Staphylococcus aureus}
Length = 219
Score = 29.3 bits (67), Expect = 1.0
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 36 RKTKVAILGPTASGKSSVALKISE 59
+ +A+ GP A+GKS++A +++
Sbjct: 2 KAINIALDGPAAAGKSTIAKRVAS 25
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 1.1
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 31/86 (36%)
Query: 195 KRISDR---FKKMLDQDLLINEVKKIRKKWNLNLNLPSMKCIGYRQTWEYIDGLIDRNTL 251
KR+ + K M + + KK ++W ++ ++
Sbjct: 96 KRLQELDAASKVMEQE--WREKAKKDLEEW-------------NQR----------QSEQ 130
Query: 252 KEKSIIATRQLAKQQLTWLRNMNEKI 277
EK+ I R K + + + I
Sbjct: 131 VEKNKINNRIADKA---FYQQPDADI 153
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 29.0 bits (66), Expect = 1.6
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 40 VAILGPTASGKSSVA 54
+ I GP+ +GK ++
Sbjct: 8 ITIDGPSGAGKGTLC 22
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics,
cell membrane, cobalt transport, hydrolase, ION
transport; 2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 28.7 bits (65), Expect = 2.1
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 39 KVAILGPTASGKSSVAL 55
AILG GKS++
Sbjct: 36 VTAILGGNGVGKSTLFQ 52
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 28.3 bits (64), Expect = 2.4
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 6/26 (23%)
Query: 27 RIRTGKLLFRKTKVAILGPTASGKSS 52
I G L VA++G GKSS
Sbjct: 27 SIPEGAL------VAVVGQVGCGKSS 46
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 27.7 bits (62), Expect = 2.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 25 FRRIRTGKLLFRKTKVAILGPTASGKSSV 53
FR + F++ I+G SGKSS+
Sbjct: 11 FRSHSDTVVEFKEGINLIIGQNGSGKSSL 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 28.3 bits (64), Expect = 2.6
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 6/26 (23%)
Query: 27 RIRTGKLLFRKTKVAILGPTASGKSS 52
+I G+L +A+ G T +GK+S
Sbjct: 30 KIERGQL------LAVAGSTGAGKTS 49
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 28.5 bits (64), Expect = 2.6
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 6/26 (23%)
Query: 27 RIRTGKLLFRKTKVAILGPTASGKSS 52
+I G+L +A+ G T +GK+S
Sbjct: 60 KIERGQL------LAVAGSTGAGKTS 79
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A
{Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A
2fh9_A 3mn3_A
Length = 275
Score = 28.3 bits (64), Expect = 2.8
Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 48/177 (27%)
Query: 29 RTGKLL----FRKTKVAILGPTASGKSSVALKISEYIPCEIISID-SALVYCDMDIGTNK 83
+ K L F K K+A T VALKI I+ L DM
Sbjct: 16 QIVKTLGEGSFAKVKLAYHTTT---GQKVALKI----------INKKVLAKSDMQGR--- 59
Query: 84 PSIIEREIT-------PH--HLIDIIE-PTKSYSVIQFCEDALFSIKNILKKKKLPLLVG 133
IEREI+ PH L D+I+ + VI++ + LF I+++ K+
Sbjct: 60 ---IEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDY--IVQRDKMSEQEA 114
Query: 134 GTMLYFKALRDGIN----------KLPPANLKLRTKFNIDINKYGISFLYDKLKLLD 180
+F+ + + L P NL L N+ I +G+S + L
Sbjct: 115 --RRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLK 169
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG
MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Length = 178
Score = 27.4 bits (60), Expect = 3.8
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 59 EYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSY 106
+ C I ++ L+ C K +I +E +P+ + K Y
Sbjct: 59 QADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDY 106
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc;
ABC-transporter, ABCB6, nucleotide binding domain, heme
BIOS transport protein; 2.00A {Homo sapiens} PDB:
3nh9_A* 3nha_A* 3nhb_A*
Length = 306
Score = 28.0 bits (63), Expect = 3.8
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 38 TKVAILGPTASGKSSVA 54
+A++GP+ +GKS++
Sbjct: 81 QTLALVGPSGAGKSTIL 97
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 27.5 bits (62), Expect = 3.8
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
Query: 39 KVAILGPTASGKSSVALK------ISEYIP 62
+AILG +GKS++ +K ISEY P
Sbjct: 23 NLAILGRRGAGKSALTVKFLTKRFISEYDP 52
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 27.4 bits (60), Expect = 4.7
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 37 KTKVAIL-GPTASGKSSVALKISEYIP 62
T++ IL G +++GKS + + +P
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC
transporter, nucleotide binding domain, NBD; HET: B44;
2.70A {Homo sapiens}
Length = 390
Score = 27.8 bits (62), Expect = 5.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 39 KVAILGPTASGKSSVAL 55
+V +LG T SGKS++
Sbjct: 49 RVGLLGRTGSGKSTLLS 65
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 27.2 bits (60), Expect = 5.2
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIIS 67
I GP GKS+ +++ +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYI 32
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope
protein, glycoprotein, hemagglutinin, hydrolase,
membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC
LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Length = 141
Score = 26.9 bits (59), Expect = 5.2
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 59 EYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSY 106
+ CE + L+ CD + +I +E +P+ Y
Sbjct: 60 QGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDY 107
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on
protein structural and function analyses; HET: LYS;
2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Length = 290
Score = 27.6 bits (62), Expect = 5.5
Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 27/85 (31%)
Query: 77 MDIGTNKP------------SIIER--------------EITPHHLIDIIEP-TKSYSVI 109
MD+G N+ ++E+ ++ I
Sbjct: 10 MDLGANRRGVDMGPSALRYARLLEQLEDLGYTVEDLGDVPVSLARASRRRGRGLAYLEEI 69
Query: 110 QFCEDALFSIKNILKKKKLPLLVGG 134
+ L L + P+++GG
Sbjct: 70 RAAALVLKERLAALPEGVFPIVLGG 94
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 27.5 bits (62), Expect = 6.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 40 VAILGPTASGKSSVA 54
VA+LG T SGKS++
Sbjct: 372 VAVLGETGSGKSTLM 386
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 27.2 bits (61), Expect = 6.1
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 39 KVAILGPTASGKSSVAL 55
+ + G T SGKS++
Sbjct: 35 CLLVAGNTGSGKSTLLQ 51
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 27.6 bits (60), Expect = 6.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 40 VAILGPTASGKSSVALK 56
+ GPT SGK+ A++
Sbjct: 158 IFHSGPTNSGKTYHAIQ 174
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET:
SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A*
3ssm_A*
Length = 419
Score = 27.2 bits (59), Expect = 7.0
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 111 FCEDALFSIKNILKKKKLPLLVGGTML-YFKALRDGINKLPPANLKLRTKFNIDINKYGI 169
ED + + P GT L K+L D I + R+ +D N G+
Sbjct: 321 VIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQELPSDPNRSPGYVDRNIVGL 380
Query: 170 SF 171
Sbjct: 381 HV 382
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding,
nucleotide-binding, phosphoprotei
serine/threonine-protein kinase, transferase; 2.80A
{Schizosaccharomyces pombe}
Length = 336
Score = 26.9 bits (60), Expect = 8.1
Identities = 45/177 (25%), Positives = 65/177 (36%), Gaps = 48/177 (27%)
Query: 29 RTGKLL----FRKTKVAILGPTASGKSSVALKISEYIPCEIISID-SALVYCDMDIGTNK 83
+ L F K K+A T + VALK I L DM +
Sbjct: 12 IIRETLGEGSFGKVKLATHYKT---QQKVALKF----------ISRQLLKKSDMHMR--- 55
Query: 84 PSIIEREIT-------PH--HLIDIIE-PTKSYSVIQFCEDALFSIKNILKKKKLPLLVG 133
+EREI+ PH L D+I PT VI++ LF I++KK++ G
Sbjct: 56 ---VEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYAGGELFDY--IVEKKRMTEDEG 110
Query: 134 GTMLYFKALRDGIN----------KLPPANLKLRTKFNIDINKYGISFLYDKLKLLD 180
+F+ + I L P NL L N+ I +G+S + L
Sbjct: 111 --RRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLK 165
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A
{Sulfolobus tokodaii} SCOP: c.77.1.1
Length = 336
Score = 26.8 bits (60), Expect = 8.2
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 36 RKTKVAILGPTASGKSSVALKI 57
K + + GP + V +K+
Sbjct: 63 DKADIILKGPVGESAADVVVKL 84
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 27.1 bits (59), Expect = 8.7
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIG 80
+V I+G + +GK+S++ + Y + +Y ++D
Sbjct: 140 RVVIVGGSQTGKTSLSRTLCSYA---LKFNAYQPLYINLDPQ 178
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold,
csgid, ATP-binding, nucleotide-BIND purine biosynthesis;
HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp}
PDB: 3qty_A*
Length = 350
Score = 26.7 bits (60), Expect = 8.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 115 ALFSIKNILKKKKLPLLVGGT 135
+L+S+KNI+ P+LV
Sbjct: 47 SLYSLKNIINNYDDPVLVQSI 67
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann
fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella
typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Length = 180
Score = 26.2 bits (58), Expect = 9.7
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 42 ILGPTASGKSSVALKI 57
+ G SGKS A +
Sbjct: 4 VTGGARSGKSRHAEAL 19
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 26.5 bits (58), Expect = 9.8
Identities = 4/34 (11%), Positives = 15/34 (44%)
Query: 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISID 69
+ + G GK+++ +++ + I++
Sbjct: 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.404
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,580,044
Number of extensions: 276425
Number of successful extensions: 887
Number of sequences better than 10.0: 1
Number of HSP's gapped: 867
Number of HSP's successfully gapped: 115
Length of query: 298
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 205
Effective length of database: 4,105,140
Effective search space: 841553700
Effective search space used: 841553700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)