RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8556
(298 letters)
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 33.3 bits (75), Expect = 0.019
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSAL---VYCDMDIGTNKPSIIEREITPHH 95
+V +LGP +GK + A+K++E + IS + +G ++
Sbjct: 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61
Query: 96 LIDI 99
+
Sbjct: 62 DLTN 65
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 33.0 bits (74), Expect = 0.022
Identities = 9/76 (11%), Positives = 21/76 (27%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID 98
++ ++GP +GK + A + E ++ L + + D
Sbjct: 4 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 63
Query: 99 IIEPTKSYSVIQFCED 114
I +
Sbjct: 64 DIMVNMIKDELTNNPA 79
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 32.2 bits (73), Expect = 0.052
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 40 VAILGPTASGKSSVALKISEYIPCE-----IISIDS 70
+++ G + +G S+V + E I D+
Sbjct: 7 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA 42
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 31.8 bits (71), Expect = 0.053
Identities = 14/50 (28%), Positives = 15/50 (30%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIE 88
KV I G ASGK + I IS L N E
Sbjct: 5 KVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKE 54
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 31.8 bits (71), Expect = 0.059
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM 77
+ + +LGP +GK + A K+++ ++ L
Sbjct: 2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVA 43
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 31.4 bits (71), Expect = 0.083
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHH 95
+ I+G + SGKS++ I + E + + D+ P+ + R++
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPENGQV----LIDGHDLALADPNWLRRQVGVVL 83
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 31.0 bits (69), Expect = 0.11
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSAL---VYCDMDIGTNKPSIIEREIT 92
R + AI+G SGK +V+ +I+++ + +S L + +IG + I++
Sbjct: 5 RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64
Query: 93 PHH 95
Sbjct: 65 IPD 67
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 30.8 bits (68), Expect = 0.15
Identities = 23/176 (13%), Positives = 43/176 (24%), Gaps = 7/176 (3%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPH---- 94
VAILG +SGKS + K++ + G +
Sbjct: 9 TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQ 68
Query: 95 --HLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPA 152
+ K + K L F N
Sbjct: 69 RYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWV 128
Query: 153 NLKLRTKFNIDINKYGISFLYDKLKLLDPVTANQPS-NRHILHKRISDRFKKMLDQ 207
+ LR+ + + L L S + + ++ +K+L++
Sbjct: 129 DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEKVLNE 184
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 30.3 bits (68), Expect = 0.15
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
V I G + GKS AL++ + +++ D+ + I ++ ++ H L
Sbjct: 18 VLITGDSGIGKSETALELIKR-GHRLVADDNVEIRE---ISKDELIGRAPKLIEHLLEIR 73
Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLV 132
+ LF +IL +K+L L +
Sbjct: 74 -------GLGIINVMTLFGAGSILTEKRLRLNI 99
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 30.6 bits (68), Expect = 0.16
Identities = 8/50 (16%), Positives = 15/50 (30%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIE 88
+ ++G +GK + A +I E IS +
Sbjct: 2 NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKS 51
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 30.3 bits (67), Expect = 0.16
Identities = 10/69 (14%), Positives = 24/69 (34%)
Query: 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHH 95
+ + + +LG +GK + K+ + +S L G+ +I+ I
Sbjct: 7 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQ 66
Query: 96 LIDIIEPTK 104
++
Sbjct: 67 IVPQEITLA 75
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 30.7 bits (68), Expect = 0.17
Identities = 13/74 (17%), Positives = 25/74 (33%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
+ + G TASGKSSV KI + + + V + E++
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFN 64
Query: 100 IEPTKSYSVIQFCE 113
+ ++ +
Sbjct: 65 FDHPDAFDNELILK 78
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 30.3 bits (67), Expect = 0.18
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIERE 90
+ + G SGKS++A ++ + S ++ + G P + +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSH 57
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 30.4 bits (67), Expect = 0.19
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 36 RKTKVAILGPTASGKSSVALKISE 59
+ ++AI GP +SGKS+VA I++
Sbjct: 2 KTIQIAIDGPASSGKSTVAKIIAK 25
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 30.3 bits (67), Expect = 0.19
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM 77
+ V +LG SGK + I +S L
Sbjct: 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQ 46
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 30.3 bits (67), Expect = 0.19
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHL 96
++ +LG +GK + A I E IS L + G+ + + L
Sbjct: 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAA-VKSGSELGKQAKDIMDAGKL 58
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 30.3 bits (67), Expect = 0.21
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 18 QRQLTADFRRIRTGKLLFRKTKVAIL-GPTASGKSSVALKISEYIPCEIISIDS 70
+ +L + + GK +L G SGK+S+ I E +I ID+
Sbjct: 12 ENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 65
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 30.0 bits (66), Expect = 0.26
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIIS 67
+ I GP+ +GK ++ ++E + ++
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQWHLLD 33
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 29.9 bits (66), Expect = 0.26
Identities = 12/61 (19%), Positives = 24/61 (39%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID 98
V +LG +GK + +I E +S L + + +IE+ I ++
Sbjct: 3 VVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVP 62
Query: 99 I 99
+
Sbjct: 63 V 63
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 29.9 bits (67), Expect = 0.30
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREI 91
A++GP SGKS+VA + + + + + + R++
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLYQPTGGQL----LLDGKPLPQYEHRYLHRQV 90
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 29.7 bits (65), Expect = 0.32
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 13 ETDPQQRQLTADFRRIRTGKLLFRKTKVAILGPTASGKSSVALKISEYIPCEIISIDSAL 72
E + L I+T L + I G + SGK+++A ++S+ + + IS+
Sbjct: 2 ELRDRIDFLCKTILAIKTAGRLV----LGIDGLSRSGKTTLANQLSQTLREQGISV---- 53
Query: 73 VYCDMDIGTNKPSIIEREITPHHLID 98
MD + +
Sbjct: 54 CVFHMDDHIVERAKRYHTGNEEWFEY 79
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 29.5 bits (65), Expect = 0.47
Identities = 17/185 (9%), Positives = 48/185 (25%), Gaps = 4/185 (2%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID 98
+ + G SGK + A I + + + + +
Sbjct: 3 LIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFE 62
Query: 99 IIEPTKSYSVIQFCEDALFSIKNILKK---KKLPLLVGGTMLYFKALRDGINKLPPANLK 155
I+ + ++ + + ++ K V K + + ++
Sbjct: 63 GIDYDRETNLNLTKLEVITIMEQAFCYLNGKSPIKGVFVFDDEGKESVNFVAFNKITDVI 122
Query: 156 LRTKFNIDINKYGISFLYD-KLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINEV 214
+ + + + D + D + + L K S ++ +E+
Sbjct: 123 NNIEDQWSVRRLMQALGTDLIVNNFDRMYWVKLFALDYLDKFNSGYDYYIVPDTRQDHEM 182
Query: 215 KKIRK 219
R
Sbjct: 183 DAARA 187
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 29.1 bits (65), Expect = 0.63
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 39 KVAILGPTASGKSSVALKIS-EYIPCE-IISIDSALVYCDMDIGTNKPSIIER 89
+AI G T SGK+S+ + I E E II + +C +I E
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKEN 116
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.4 bits (62), Expect = 0.66
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISI 68
K+ I G GK+++ KI E + I
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGF 31
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 28.4 bits (62), Expect = 0.80
Identities = 7/70 (10%), Positives = 20/70 (28%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
+ + G +++GKS + + +P ++ + M + +
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIG 65
Query: 100 IEPTKSYSVI 109
E
Sbjct: 66 PEFRALEGAW 75
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 28.3 bits (62), Expect = 0.80
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVY---CDMDIGTNKPSIIER 89
+ ++G +GK + A KI IS +G ++R
Sbjct: 2 NLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDR 55
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 27.8 bits (60), Expect = 1.1
Identities = 19/149 (12%), Positives = 49/149 (32%), Gaps = 3/149 (2%)
Query: 37 KTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHL 96
K + ++GP +GKS++ ++++ + E D + G + + + E
Sbjct: 2 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD---QEIEKRTGADVGWVFDLEGEEGFR 58
Query: 97 IDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKL 156
+ + Q A ++ + L G ++Y + + + K
Sbjct: 59 DREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKR 118
Query: 157 RTKFNIDINKYGISFLYDKLKLLDPVTAN 185
+ + L ++ L A+
Sbjct: 119 PLLHVETPPREVLEALANERNPLYEEIAD 147
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 27.3 bits (59), Expect = 1.3
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 34 LFRKTKVAIL-GPTASGKSSVAL 55
+ +K +L +GK+ L
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFL 25
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 27.6 bits (60), Expect = 1.3
Identities = 10/79 (12%), Positives = 20/79 (25%)
Query: 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHH 95
+ + ++G SGK + KI + +S L + E
Sbjct: 7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQL 66
Query: 96 LIDIIEPTKSYSVIQFCED 114
+ + D
Sbjct: 67 VPLETVLDMLRDAMVAKVD 85
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 28.0 bits (61), Expect = 1.4
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 34 LFRKTKVAIL-GPTASGKSSVAL 55
+FRK ++ I+ +GK+ L
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYL 27
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 27.9 bits (60), Expect = 1.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 24 DFRRIRTGKLLFRKTKVAILGPTASGKSSV 53
+FR + F++ I+G SGKSS+
Sbjct: 10 NFRSHSDTVVEFKEGINLIIGQNGSGKSSL 39
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 27.5 bits (61), Expect = 1.6
Identities = 14/91 (15%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 38 TKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLI 97
VA++G + SGKS++A I+ + + I + D+ + + ++
Sbjct: 42 KTVALVGRSGSGKSTIASLITRFYDIDEGHI----LMDGHDLREYTLASLRNQVALVSQN 97
Query: 98 DIIEPTKSYSVIQFCEDALFSIKNILKKKKL 128
+ + I + +S + I + ++
Sbjct: 98 VHLFNDTVANNIAYARTEEYSREQIEEAARM 128
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.5 bits (60), Expect = 1.6
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM 77
V +G +GKS+ + ++ D+ +
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRC 54
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 27.2 bits (59), Expect = 1.7
Identities = 5/42 (11%), Positives = 17/42 (40%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIG 80
+ + G GK+++ +++ + I++ + G
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDG 47
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 27.5 bits (61), Expect = 1.8
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 36 RKTKVAILGPTASGKSSVA 54
+ +A GP+ GKS++
Sbjct: 27 PNSIIAFAGPSGGGKSTIF 45
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 27.3 bits (59), Expect = 1.9
Identities = 22/187 (11%), Positives = 54/187 (28%), Gaps = 14/187 (7%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDI 99
V I G SGK++ +Y + + ++ N + E+
Sbjct: 12 VLIEGNIGSGKTTYLNHFEKYKNDICL------LTEPVEKWRNVNGVNLLELMYKDPKKW 65
Query: 100 IEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGTMLYFKALRDGINKLPPANLKLRTK 159
P +SY L +++ L + ++ N +L+
Sbjct: 66 AMPFQSY-------VTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMY 118
Query: 160 FNIDINKYGISFLYDKLKLLDPVTANQPSNRHILHKRISDRFKKMLDQDLLINEVKKIRK 219
++ I L P + ++ + + + L E+ ++ +
Sbjct: 119 NTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYL-QELHELHE 177
Query: 220 KWNLNLN 226
W ++
Sbjct: 178 DWLIHQR 184
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 27.4 bits (61), Expect = 2.0
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 39 KVAILGPTASGKSSVA 54
VA +G + GKS++
Sbjct: 46 TVAFVGMSGGGKSTLI 61
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 26.9 bits (58), Expect = 2.2
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 36 RKTKVAILGPTASGKSSVALKISEYIPCEI 65
R+ ++ +LG +GK+++ K + I
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTI 30
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 125
Score = 26.4 bits (57), Expect = 2.6
Identities = 14/73 (19%), Positives = 25/73 (34%)
Query: 63 CEIISIDSALVYCDMDIGTNKPSIIEREITPHHLIDIIEPTKSYSVIQFCEDALFSIKNI 122
CE S L +CD +G ++ + I H++ + S + F I
Sbjct: 1 CEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVG 60
Query: 123 LKKKKLPLLVGGT 135
K + G+
Sbjct: 61 EVIKGWDQGILGS 73
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 26.5 bits (57), Expect = 2.8
Identities = 11/92 (11%), Positives = 29/92 (31%)
Query: 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHH 95
+ + I G +GK+S+A I+ + LV + + I
Sbjct: 4 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKD 63
Query: 96 LIDIIEPTKSYSVIQFCEDALFSIKNILKKKK 127
+++ + V + + + ++
Sbjct: 64 EDRLLDFMEPIMVSRGNHVVDYHSSELFPERW 95
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 26.4 bits (58), Expect = 3.2
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMD 78
V + G + GKS AL + + D+ +Y +
Sbjct: 18 VLLTGRSGIGKSECALDLINK-NHLFVGDDAIEIYRLGN 55
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 26.0 bits (56), Expect = 4.4
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM 77
+ +G SGKS++A +++ + + D +
Sbjct: 3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN 40
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 26.1 bits (56), Expect = 4.7
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 34 LFRKT--KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTN 82
LF KV I+G +GK+++ + S + V + T
Sbjct: 10 LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTR 60
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 26.3 bits (57), Expect = 4.8
Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 34 LFRKT-KVAILGPTASGKSSVA--LKISEYIP 62
++R T ++ +LG SGKS++ ++I +
Sbjct: 2 VYRATHRLLLLGAGESGKSTIVKQMRILHVVL 33
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 26.1 bits (56), Expect = 4.9
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM 77
++ ++ +LG A+GK+++ K+ I V
Sbjct: 11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT 52
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 25.8 bits (56), Expect = 5.0
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 10/109 (9%)
Query: 42 ILGPTASGKSSVALKISE-----YIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHL 96
I+GP SGKS ++ ++ + Y D+ ++ + +
Sbjct: 12 IVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSR 71
Query: 97 IDIIEPTKSYSVI-----QFCEDALFSIKNILKKKKLPLLVGGTMLYFK 140
+ + VI QF +D + I N + + ++ G + F+
Sbjct: 72 EILKYFEEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDFR 120
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 25.7 bits (55), Expect = 5.1
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID 98
++ I+G GKS++ ++ E +I + + D+ + + I
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLN----EDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG 57
Query: 99 IIEPTKSYSVIQFCEDALFSIKN 121
+ T E L I+
Sbjct: 58 VRSETNDLVERLGIERTLQEIEK 80
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 26.2 bits (57), Expect = 5.6
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 40 VAILGPTASGKSSVALKISEYI-------PCEIISIDS 70
++I G A GKS+ A + + E+I+ D
Sbjct: 83 ISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120
>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic
domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 277
Score = 25.9 bits (56), Expect = 5.7
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 2 RDVKDVLDRDTETDPQQR-----QLTADFRRIRTG 31
D+ V+ + +P+ R ++ AD R+ G
Sbjct: 243 ADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNG 277
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 25.7 bits (55), Expect = 5.7
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 38 TKVAILGPTASGKSSVALKISEY-----IPCEIISID 69
T + ++G A GK+ ++ K++ Y +P ++
Sbjct: 3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 39
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 25.8 bits (55), Expect = 5.7
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 36 RKTKVAILGPTASGKSSVALKISEYIPCEII 66
+ K+ LG +GK+++ + + + +
Sbjct: 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV 42
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 25.5 bits (54), Expect = 6.1
Identities = 10/80 (12%), Positives = 22/80 (27%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID 98
KV +LG GKS++A + + + S++ +I
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62
Query: 99 IIEPTKSYSVIQFCEDALFS 118
+ + +
Sbjct: 63 WLPGHCMAMGDAYVIVYSVT 82
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 25.4 bits (54), Expect = 6.2
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 36 RKTKVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMD 78
R+ ++ ILG +GK+++ ++ I V
Sbjct: 4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTY 46
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 25.2 bits (54), Expect = 6.2
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 36 RKTKVAIL-GPTASGKSSVALKI 57
+ +VA L PT SGKS+
Sbjct: 6 QSFQVAHLHAPTGSGKSTKVPAA 28
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 25.7 bits (55), Expect = 6.3
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISI 68
V + G G ++ + + + E ++
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 25.3 bits (54), Expect = 6.8
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 36 RKTKVAILGPTASGKSSVALK-------------ISEYIPCEIISIDSALVYCDMDIGTN 82
R+ KV +LG GKS++ ++ I ++ EI S V +D
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 83 KPSIIERE--ITPHHLIDIIEPTKSYSVIQFCEDALFSIKNILKKKKLPLLVGGT 135
+ R+ I ++ + Q + I + + +K+P+++ G
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 25.8 bits (56), Expect = 6.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISI 68
ILGPT +GK+ I+ + + I
Sbjct: 29 FVILGPTGAGKTLFLELIAGFHVPDSGRI 57
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 25.9 bits (55), Expect = 7.1
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISID 69
+LG +GKSS+ + I +D
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLD 61
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 25.9 bits (55), Expect = 7.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 24 DFRRIRTGKLLFRKTKVAILGPTASGKSSV 53
+FR + F++ I+G SGKSS+
Sbjct: 10 NFRSHSDTVVEFKEGINLIIGQNGSGKSSL 39
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 25.3 bits (54), Expect = 7.3
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSALVYC 75
+ I GP+ +GKS++ K+ P S+
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT 39
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 25.4 bits (54), Expect = 7.5
Identities = 11/76 (14%), Positives = 24/76 (31%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDMDIGTNKPSIIEREITPHHLID 98
++ ++G SGK++ I+ E + + G + + P
Sbjct: 4 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSM 63
Query: 99 IIEPTKSYSVIQFCED 114
+ S I + D
Sbjct: 64 WERYCRGVSAIVYMVD 79
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 25.0 bits (53), Expect = 8.1
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEI 65
K+ LG +GK+++ + +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLATL 28
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 25.3 bits (55), Expect = 8.1
Identities = 5/25 (20%), Positives = 15/25 (60%)
Query: 40 VAILGPTASGKSSVALKISEYIPCE 64
+ ++GP +GKS++ +++ +
Sbjct: 28 LHLVGPNGAGKSTLLARMAGMTSGK 52
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 25.4 bits (54), Expect = 8.2
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 36 RKTKVAILGPTASGKSSVALK------ISEYIPCEIISIDSALVYCDMDIGTNKPSIIER 89
R+ KV +LG T GKSS+ + P S + V ++
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62
Query: 90 EITPHHLIDIIEPTKSYSVIQFC 112
L + + ++I +
Sbjct: 63 LERFRALAPMYYRGSAAAIIVYD 85
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 25.3 bits (55), Expect = 8.3
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 40 VAILGPTASGKSSVAL 55
V I G + GKS AL
Sbjct: 17 VLITGDSGVGKSETAL 32
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 25.0 bits (53), Expect = 8.7
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISIDSAL 72
I GP GKS+ +++ + +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDII 37
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 25.3 bits (55), Expect = 8.9
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 36 RKTKVAILGPTASGKSSVALKISEYIP 62
++ + G GKS+ ++
Sbjct: 5 TIVRIYLDGVYGIGKSTTGRVMASAAS 31
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 25.3 bits (55), Expect = 9.4
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISI 68
V +GP+ GKS++ I+ +
Sbjct: 29 VVFVGPSGCGKSTLLRMIAGLETITSGDL 57
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 25.0 bits (53), Expect = 9.5
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 39 KVAILGPTASGKSSVALK------ISEYIP-CEIISIDSALVYCDMDIGTNKPSIIEREI 91
KV ILG + GK+S+ + +Y + + + T + +
Sbjct: 4 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63
Query: 92 TPHHLIDIIEPTKSYSVIQFCEDALFSIKN 121
L V+ + S +N
Sbjct: 64 RFQSLGVAFYRGADCCVLVYDVTNASSFEN 93
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 25.0 bits (53), Expect = 9.8
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 39 KVAILGPTASGKSSVALKISEYIPCEIISIDSALVYCDM 77
K ++G SGKS++ ++++ + ++ D A+
Sbjct: 3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG 41
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 25.3 bits (55), Expect = 9.8
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 40 VAILGPTASGKSSVALKISEYIPCEIISI 68
+ +LGP+ GK++ I+ I
Sbjct: 32 MILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.404
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,139,347
Number of extensions: 55435
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 155
Length of query: 298
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,240,546
Effective search space: 264236298
Effective search space used: 264236298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)