Your job contains 1 sequence.
>psy8560
MKIIAFERKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSIL
NLEIYGKVELVLLRNFQLHAYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVKLNS
CIISNVISDLYISCLPKNLPKFIEINLEKMEVNTSIHLSDIKLPRGVSVIHSTEEDPTIA
TAIIPVNTLESDNNSSIEKEKNNNS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8560
(205 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CPS_3558 - symbol:CPS_3558 "ribosomal 5S rRNA E-... 344 2.6e-31 1
TIGR_CMR|CBU_1840 - symbol:CBU_1840 "ribosomal 5S rRNA E-... 329 1.0e-29 1
TIGR_CMR|APH_1302 - symbol:APH_1302 "ribosomal 5S rRNA E-... 293 6.6e-26 1
TIGR_CMR|ECH_0142 - symbol:ECH_0142 "ribosomal 5S rRNA E-... 267 3.8e-23 1
TIGR_CMR|CHY_0195 - symbol:CHY_0195 "ribosomal protein L2... 262 1.3e-22 1
TIGR_CMR|GSU_0662 - symbol:GSU_0662 "ribosoma protein L25... 214 1.6e-17 1
TIGR_CMR|SPO_0812 - symbol:SPO_0812 "ribosomal protein L2... 214 1.6e-17 1
TIGR_CMR|NSE_0306 - symbol:NSE_0306 "ribosomal 5S rRNA E-... 211 3.2e-17 1
UNIPROTKB|P66121 - symbol:rplY "50S ribosomal protein L25... 177 1.3e-13 1
TIGR_CMR|SO_2112 - symbol:SO_2112 "ribosomal protein L25"... 161 6.4e-12 1
UNIPROTKB|Q9KRK0 - symbol:rplY "50S ribosomal protein L25... 158 1.3e-11 1
TIGR_CMR|VC_1640 - symbol:VC_1640 "ribosomal protein L25"... 158 1.3e-11 1
UNIPROTKB|P68919 - symbol:rplY "50S ribosomal subunit pro... 157 1.7e-11 1
TIGR_CMR|DET_1454 - symbol:DET_1454 "ribosomal 5S rRNA E-... 145 3.2e-10 1
TIGR_CMR|CJE_0356 - symbol:CJE_0356 "ribosomal protein L2... 116 7.0e-06 1
>TIGR_CMR|CPS_3558 [details] [associations]
symbol:CPS_3558 "ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5" species:167879 "Colwellia psychrerythraea 34H"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0006950 "response to
stress" evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] HAMAP:MF_01334
InterPro:IPR001021 InterPro:IPR011035 InterPro:IPR020055
Pfam:PF01386 ProDom:PD012503 GO:GO:0006412 GO:GO:0005840
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735 GO:GO:0008097
eggNOG:COG1825 HOGENOM:HOG000214907 KO:K02897 OMA:ANVHAPR
ProtClustDB:PRK05618 Gene3D:2.170.120.20 Gene3D:2.40.240.10
InterPro:IPR020056 InterPro:IPR020057 SUPFAM:SSF50715
TIGRFAMs:TIGR00731 RefSeq:YP_270232.1 ProteinModelPortal:Q47Y88
STRING:Q47Y88 GeneID:3520397 KEGG:cps:CPS_3558 PATRIC:21470047
BioCyc:CPSY167879:GI48-3586-MONOMER Uniprot:Q47Y88
Length = 211
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 65/181 (35%), Positives = 110/181 (60%)
Query: 8 RKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSILNLEIYGK 67
R G SR LR KVP I+YG N++P+ +++ H ++ A ++E F+S +L L I GK
Sbjct: 12 RTDLGKGASRRLRHANKVPAILYGENEEPISLTLEHKNVFRAQQEEAFYSQVLTLNIAGK 71
Query: 68 VELVLLRNFQLHAYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVKLNSCIISNVI 127
L+++ Q H +K++V+H DF R+D + +H P+HF+N + + N IS+ +
Sbjct: 72 PVECLIKDMQRHPFKQVVMHLDFLRIDAKHAVHANAPIHFLNEDEAAKTGAN---ISHHM 128
Query: 128 SDLYISCLPKNLPKFIEINLEKMEVNTSIHLSDIKLPRGVS---VIHSTEEDPTIATAII 184
+++ I+CLPK+LP+FI I+L +E+ +IHLSD+ P GV+ + + D + +A
Sbjct: 129 NEIAITCLPKDLPEFISIDLAGLELGQTIHLSDVTFPAGVTSDELAKGEDHDLAVVSANA 188
Query: 185 P 185
P
Sbjct: 189 P 189
>TIGR_CMR|CBU_1840 [details] [associations]
symbol:CBU_1840 "ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5" species:227377 "Coxiella burnetii RSA 493" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0008097 eggNOG:COG1825 HOGENOM:HOG000214907 KO:K02897
OMA:ANVHAPR ProtClustDB:PRK05618 Gene3D:2.170.120.20
Gene3D:2.40.240.10 InterPro:IPR020056 InterPro:IPR020057
SUPFAM:SSF50715 TIGRFAMs:TIGR00731 RefSeq:NP_820819.1
ProteinModelPortal:Q83AP1 PRIDE:Q83AP1 GeneID:1209752
KEGG:cbu:CBU_1840 PATRIC:17932411
BioCyc:CBUR227377:GJ7S-1814-MONOMER Uniprot:Q83AP1
Length = 244
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 68/187 (36%), Positives = 117/187 (62%)
Query: 2 KIIAFERKKKGTSFSRNLRKI-GKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSIL 60
++IA R+ G S +R +R+ KVPG +YG K P I++ + AL+ E+ SSIL
Sbjct: 7 ELIAELREFTGKSAARRMRRFEDKVPGTVYGAGKAPQSITLLQKDLLKALESESTFSSIL 66
Query: 61 NLEIYGKVELVLLRNFQLHAYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVKLNS 120
L++ K + V+L+ Q H K ++H DFQR+ +K+ + VPLHF+ + P V+
Sbjct: 67 TLKVGDKKQKVILKALQRHHTKPKIVHIDFQRIKASEKLIMNVPLHFLGEDDCPGVEAGG 126
Query: 121 CIISNVISDLYISCLPKNLPKFIEINLEKMEVNTSIHLSDIKLPRGVSVIHSTEE--DPT 178
++S++ S++ I CLP +LP++IE++L ++++ S+HLS++KLP GV + + +E D
Sbjct: 127 -VVSHLQSEVEIRCLPADLPEYIEVDLSHLQLDESVHLSNLKLPAGVGLTSAVDEEHDSP 185
Query: 179 IATAIIP 185
IA+ +P
Sbjct: 186 IASVHMP 192
>TIGR_CMR|APH_1302 [details] [associations]
symbol:APH_1302 "ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0000315 "organellar large ribosomal subunit" evidence=ISS]
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0006950 "response to
stress" evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0008097 RefSeq:YP_505816.1 ProteinModelPortal:Q2GII5
STRING:Q2GII5 GeneID:3931047 KEGG:aph:APH_1302 PATRIC:20951400
eggNOG:COG1825 HOGENOM:HOG000214907 KO:K02897 OMA:ANVHAPR
ProtClustDB:PRK05618 BioCyc:APHA212042:GHPM-1304-MONOMER
Gene3D:2.170.120.20 Gene3D:2.40.240.10 InterPro:IPR020056
InterPro:IPR020057 SUPFAM:SSF50715 TIGRFAMs:TIGR00731
Uniprot:Q2GII5
Length = 211
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 69/187 (36%), Positives = 109/187 (58%)
Query: 1 MKIIAFERKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKK-ETF--HS 57
+K+ A R++ GT +R LR G +P +IYG N+DP+ IS++ LKK TF S
Sbjct: 7 IKVDASVRERCGTGSARALRARGLIPAVIYGKNRDPINISLSQ---VDFLKKCRTFPIFS 63
Query: 58 SILNLEIYGKVELVLLRNFQLHAYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVK 117
++ L I K E V+ ++ Q H + H DFQ VD + ++ ++VPL F+N + VK
Sbjct: 64 KLIELCIGEKKEYVITKDIQKHPVSGAIAHVDFQFVDQDAEMKMEVPLVFLNEQKCVGVK 123
Query: 118 LNSCIISNVIS-DLYISCLPKNLPKFIEINLEKMEVNTSIHLSDIKLPRGVSVIHSTEED 176
I N++ L I C P ++PK +E++L + + S+H+SD+KLP ++V+ EED
Sbjct: 124 RGGVI--NILHRSLIIRCSPHHIPKSLEVDLIDVAIGHSLHVSDLKLPSTINVVMK-EED 180
Query: 177 PTIATAI 183
P IAT +
Sbjct: 181 PVIATVV 187
>TIGR_CMR|ECH_0142 [details] [associations]
symbol:ECH_0142 "ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000315 "organellar large ribosomal subunit" evidence=ISS]
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0006950 "response to
stress" evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0008097 eggNOG:COG1825 HOGENOM:HOG000214907 KO:K02897
OMA:ANVHAPR ProtClustDB:PRK05618 Gene3D:2.170.120.20
Gene3D:2.40.240.10 InterPro:IPR020056 InterPro:IPR020057
SUPFAM:SSF50715 TIGRFAMs:TIGR00731 RefSeq:YP_506970.1
ProteinModelPortal:Q2GHW3 STRING:Q2GHW3 GeneID:3926939
KEGG:ech:ECH_0142 PATRIC:20575829
BioCyc:ECHA205920:GJNR-142-MONOMER Uniprot:Q2GHW3
Length = 210
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 65/182 (35%), Positives = 98/182 (53%)
Query: 1 MKIIAFERKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSIL 60
+KI A RK GT SR LR G++P +IYG +D + IS+++ + + ++
Sbjct: 7 VKINASLRKNVGTGPSRALRLSGEIPAVIYGKGRDSLSISLSNREFVSKYRSAALSTHLI 66
Query: 61 NLEIYGKVELVLLRNFQLHAYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVKLNS 120
LEI K E VL+R+ Q H + H DFQ +D +I ++VPL F N + +K
Sbjct: 67 ELEIDNKKEYVLMRDVQKHPVTDRIQHVDFQFIDYGTEIKIEVPLIFTNEQKCIGIKRGG 126
Query: 121 CIISNVIS-DLYISCLPKNLPKFIEINLEKMEVNTSIHLSDIKLPRGVSVIHSTEEDPTI 179
+ N++ L I C PK + + IEI+L + SIH+SD+KLP V+V E +P I
Sbjct: 127 VL--NILHRTLSIKCSPKAILQNIEIDLSGLTTGHSIHVSDLKLPPEVNVTMK-EHNPAI 183
Query: 180 AT 181
T
Sbjct: 184 VT 185
>TIGR_CMR|CHY_0195 [details] [associations]
symbol:CHY_0195 "ribosomal protein L25" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0006950 "response to stress" evidence=ISS]
[GO:0008097 "5S rRNA binding" evidence=ISS] HAMAP:MF_01334
InterPro:IPR001021 InterPro:IPR011035 InterPro:IPR020055
Pfam:PF01386 ProDom:PD012503 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0008097 eggNOG:COG1825 KO:K02897 OMA:ANVHAPR
ProtClustDB:PRK05618 Gene3D:2.170.120.20 Gene3D:2.40.240.10
InterPro:IPR020056 InterPro:IPR020057 SUPFAM:SSF50715
TIGRFAMs:TIGR00731 HOGENOM:HOG000214906 RefSeq:YP_359067.1
ProteinModelPortal:Q3AFL7 STRING:Q3AFL7 GeneID:3726555
KEGG:chy:CHY_0195 PATRIC:21273571
BioCyc:CHYD246194:GJCN-196-MONOMER Uniprot:Q3AFL7
Length = 197
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 67/185 (36%), Positives = 105/185 (56%)
Query: 2 KIIAFERKKKGTSFSRN-LRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSIL 60
KI A R KK T RN L K GKVPG++YG N +PV +++N + +++ +
Sbjct: 3 KITASVRLKK-TRGERNRLLKEGKVPGVMYGKNIEPVAVAVNARELESLVERGL---KLF 58
Query: 61 NLEIYGKVELVLLRNFQLHAYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPA-VKLN 119
L + GK + VL++ Q H ++H DFQ V++ +KI VP+ PA VK
Sbjct: 59 ELSVEGKTQRVLVKELQHHPVTGKLIHVDFQVVESGRKIRQLVPVELYGE---PAGVKAG 115
Query: 120 SCIISNVISDLYISCLPKNLPKFIEINLEKMEVNTSIHLSDIKLPRGVSVIHSTEEDPTI 179
I+ + +S++ + CLP++LP+FIE ++ K+EV + + D++LP GV VI EDP
Sbjct: 116 G-ILEHGLSEVTVECLPEDLPEFIEADVSKLEVGDCLRVKDLELPPGVRVI----EDPES 170
Query: 180 ATAII 184
A+I
Sbjct: 171 IIALI 175
>TIGR_CMR|GSU_0662 [details] [associations]
symbol:GSU_0662 "ribosoma protein L25" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0006950 "response to stress" evidence=ISS] [GO:0008097 "5S rRNA
binding" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
GO:GO:0008097 eggNOG:COG1825 KO:K02897 OMA:ANVHAPR
ProtClustDB:PRK05618 Gene3D:2.170.120.20 Gene3D:2.40.240.10
InterPro:IPR020056 InterPro:IPR020057 SUPFAM:SSF50715
TIGRFAMs:TIGR00731 HOGENOM:HOG000214906 RefSeq:NP_951719.1
ProteinModelPortal:Q74FE7 DNASU:2685482 GeneID:2685482
KEGG:gsu:GSU0662 PATRIC:22024083 BioCyc:GSUL243231:GH27-681-MONOMER
Uniprot:Q74FE7
Length = 194
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 50/176 (28%), Positives = 94/176 (53%)
Query: 2 KIIAFE-RKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSIL 60
K ++ E R+K G +R LR VPG++YG +PV + + + + E +S++
Sbjct: 4 KTMSIELREKNGKGVARKLRAQDVVPGVVYGKGIEPVSVKVAAKDLAATIAGEGGLNSLI 63
Query: 61 NLEIYGKVE--LVLLRNFQLHAYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVKL 118
L G + +V++ + Q + K +LH DF R+ ++K+ V VPL + + + VK
Sbjct: 64 TLSGGGSLNGNIVIVADMQRNPLKGDILHVDFHRISLDEKVKVHVPLVMVGT--AAGVKE 121
Query: 119 NSCIISNVISDLYISCLPKNLPKFIEINLEKMEVNTSIHLSDIKLPRGVSVIHSTE 174
++ V L + CLP +P+ I +++ + + SIH+S++ LP G+ V++ E
Sbjct: 122 GG-MLDVVTYSLDVECLPTAIPEAINVDVTNLAIGHSIHVSELVLPAGIKVLNDPE 176
>TIGR_CMR|SPO_0812 [details] [associations]
symbol:SPO_0812 "ribosomal protein L25" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0006950 "response to stress" evidence=ISS] [GO:0008097 "5S rRNA
binding" evidence=ISS] HAMAP:MF_01334 InterPro:IPR001021
InterPro:IPR011035 InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0008097 eggNOG:COG1825 HOGENOM:HOG000214907
KO:K02897 ProtClustDB:PRK05618 Gene3D:2.170.120.20
Gene3D:2.40.240.10 InterPro:IPR020056 InterPro:IPR020057
SUPFAM:SSF50715 TIGRFAMs:TIGR00731 RefSeq:YP_166065.1
ProteinModelPortal:Q5LV90 GeneID:3194994 KEGG:sil:SPO0812
PATRIC:23374901 OMA:RDFTMHV Uniprot:Q5LV90
Length = 207
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/184 (26%), Positives = 93/184 (50%)
Query: 3 IIAFERKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSILNL 62
++A ER G +R R+ G VPGI++GG+ +P+ I + N + LK F S++ NL
Sbjct: 8 LVALERTGTGKGAARQARRDGMVPGIVFGGDNEPLPIQIPFNRLLKMLKAGRFKSTLFNL 67
Query: 63 EIYGKVEL-VLLRNFQLHAYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVKLNSC 121
++ G ++ V+ R+ Q K L H D R+ +I + + + F+N +P +K
Sbjct: 68 KVEGHEDVRVICRDVQRDVVKDLPTHLDLMRLRRTSRIKLFIHVDFVNHAAAPGLKKGG- 126
Query: 122 IISNVISDLYISCLPKNLPKFIEINLEKMEVNTSIHLSDIKLPRGVSVIHSTEEDPTIAT 181
+++ V ++ + ++P+ I ++L + + + +S + LP G + E D IA
Sbjct: 127 VLTVVRPEVELEVTAGDIPESITVDLTGLNIGDVVTISSVTLPAGAKP--TVERDFVIAN 184
Query: 182 AIIP 185
P
Sbjct: 185 ISAP 188
>TIGR_CMR|NSE_0306 [details] [associations]
symbol:NSE_0306 "ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000315 "organellar large ribosomal subunit" evidence=ISS]
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0006950 "response to
stress" evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0008097 eggNOG:COG1825 HOGENOM:HOG000214907 KO:K02897
Gene3D:2.170.120.20 Gene3D:2.40.240.10 InterPro:IPR020056
InterPro:IPR020057 SUPFAM:SSF50715 TIGRFAMs:TIGR00731
RefSeq:YP_506196.1 ProteinModelPortal:Q2GEA0 STRING:Q2GEA0
GeneID:3932101 KEGG:nse:NSE_0306 PATRIC:22680703 OMA:YGKEREN
ProtClustDB:CLSK2527976 BioCyc:NSEN222891:GHFU-332-MONOMER
Uniprot:Q2GEA0
Length = 194
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 55/177 (31%), Positives = 95/177 (53%)
Query: 13 TSFSRN----LRKIGKVPGIIYGGNKDPVKISMN-HNMIYHALKKETFHSSILNLEIYGK 67
TSF RN LR+ G VP +IYG ++ + ++++ ++ H S ++ L GK
Sbjct: 11 TSFGRNSANVLRRSGFVPAVIYGKERENINVAISVRDVSKHFAVLSG--SGVVELSCEGK 68
Query: 68 VELVLLRNFQLHAYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVKLNSCIISNVI 127
V V+ + ++LH +VLH DF E +VPL+F+NS S A++L + + N++
Sbjct: 69 VYKVVPKAYELHPVSSVVLHLDFVFAG-EHASKFQVPLNFVNSGKSEAIRLGAML--NIV 125
Query: 128 S-DLYISCLPKNLPKFIEINLEKMEVNTSIHLSDIKLPRGVSVIHSTEEDPTIATAI 183
+ + C NLPK I +++E +V SI SD+ P GV + + + + +AT +
Sbjct: 126 KRTVLVRCTAANLPKSIPVDIENAKVGDSIKFSDLVFPDGVVPL-ARDANSVVATVV 181
>UNIPROTKB|P66121 [details] [associations]
symbol:rplY "50S ribosomal protein L25" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0005829
EMBL:BX842575 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
HOGENOM:HOG000214908 GO:GO:0008097 eggNOG:COG1825 KO:K02897
OMA:ANVHAPR ProtClustDB:PRK05618 Gene3D:2.170.120.20
Gene3D:2.40.240.10 InterPro:IPR020056 InterPro:IPR020057
SUPFAM:SSF50715 TIGRFAMs:TIGR00731 PIR:B70622 RefSeq:NP_215531.1
RefSeq:NP_335480.1 RefSeq:YP_006514376.1 ProteinModelPortal:P66121
SMR:P66121 PRIDE:P66121 EnsemblBacteria:EBMYCT00000000333
EnsemblBacteria:EBMYCT00000069569 GeneID:13319577 GeneID:885992
GeneID:925157 KEGG:mtc:MT1043 KEGG:mtu:Rv1015c KEGG:mtv:RVBD_1015c
PATRIC:18124036 TubercuList:Rv1015c Uniprot:P66121
Length = 215
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 42/164 (25%), Positives = 84/164 (51%)
Query: 8 RKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISM-NHNMIYHALKKETFHSSILNLEIYG 66
R + G SR R+ GK+P ++YG +P + + H+ Y A+ + + +++L L+I G
Sbjct: 14 RTETGKGASRRARRAGKIPAVLYGHGAEPQHLELPGHD--YAAVLRHSGTNAVLTLDIAG 71
Query: 67 KVELVLLRNFQLHAYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVKLNSCIISNV 126
K +L L + +H ++ + HAD V +K+ V+V + + + P +++
Sbjct: 72 KEQLALTKALHIHPIRRTIQHADLLVVRRGEKVVVEVSV-VVEGQAGP-----DTLVTQE 125
Query: 127 ISDLYISCLPKNLPKFIEINLEKMEVNTSIHLSDIKLPRGVSVI 170
+ + I ++P+ + +++E E T + I LP GVS+I
Sbjct: 126 TNSIEIEAEALSIPEQLTVSIEGAEPGTQLTAGQIALPAGVSLI 169
>TIGR_CMR|SO_2112 [details] [associations]
symbol:SO_2112 "ribosomal protein L25" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_01336 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
GO:GO:0008097 eggNOG:COG1825 KO:K02897 Gene3D:2.40.240.10
InterPro:IPR020056 SUPFAM:SSF50715 TIGRFAMs:TIGR00731 OMA:SIELDHD
RefSeq:NP_717715.2 ProteinModelPortal:Q8EF74 SMR:Q8EF74
GeneID:1169855 KEGG:son:SO_2112 PATRIC:23523842 Uniprot:Q8EF74
Length = 95
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 34/88 (38%), Positives = 50/88 (56%)
Query: 3 IIAFERKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSILNL 62
I A R + G SR LR GKVP +IYG K+PV I +H I +A + F++S++ +
Sbjct: 5 ITAQTRTEIGKGSSRRLRHAGKVPAVIYGAGKEPVSIVFDHKDIINAQANDDFYTSVVTI 64
Query: 63 EIYGKVELVLLRNFQLHAYKKLVLHADF 90
+ GK V + Q HA+K ++ H DF
Sbjct: 65 VLDGKEVGVRAQAMQRHAFKPIIEHVDF 92
>UNIPROTKB|Q9KRK0 [details] [associations]
symbol:rplY "50S ribosomal protein L25" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] HAMAP:MF_01336 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0008097 eggNOG:COG1825 KO:K02897 Gene3D:2.40.240.10
InterPro:IPR020056 SUPFAM:SSF50715 OMA:SIELDHD ProtClustDB:PRK05943
PIR:C82174 RefSeq:NP_231277.1 ProteinModelPortal:Q9KRK0 SMR:Q9KRK0
DNASU:2613771 GeneID:2613771 KEGG:vch:VC1640 PATRIC:20082344
Uniprot:Q9KRK0
Length = 92
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 38/93 (40%), Positives = 51/93 (54%)
Query: 1 MKIIAFERKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSIL 60
MK A R G SR LR G P I+YGG PV IS+NH+ + + + K F+ +I+
Sbjct: 1 MKFEAVLRTDLGKGASRRLRNTGYFPAIVYGGEAAPVSISLNHDDVMNQMDKPEFYEAIV 60
Query: 61 NLEIYGKVELVLLRNFQLHAYKKLVLHADFQRV 93
L I G+ V ++ Q HAYK V H DF R+
Sbjct: 61 -LVIDGQEVKVKPQDVQRHAYKPKVEHMDFIRI 92
>TIGR_CMR|VC_1640 [details] [associations]
symbol:VC_1640 "ribosomal protein L25" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_01336 InterPro:IPR011035 InterPro:IPR020055 Pfam:PF01386
ProDom:PD012503 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0008097
eggNOG:COG1825 KO:K02897 Gene3D:2.40.240.10 InterPro:IPR020056
SUPFAM:SSF50715 OMA:SIELDHD ProtClustDB:PRK05943 PIR:C82174
RefSeq:NP_231277.1 ProteinModelPortal:Q9KRK0 SMR:Q9KRK0
DNASU:2613771 GeneID:2613771 KEGG:vch:VC1640 PATRIC:20082344
Uniprot:Q9KRK0
Length = 92
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 38/93 (40%), Positives = 51/93 (54%)
Query: 1 MKIIAFERKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSIL 60
MK A R G SR LR G P I+YGG PV IS+NH+ + + + K F+ +I+
Sbjct: 1 MKFEAVLRTDLGKGASRRLRNTGYFPAIVYGGEAAPVSISLNHDDVMNQMDKPEFYEAIV 60
Query: 61 NLEIYGKVELVLLRNFQLHAYKKLVLHADFQRV 93
L I G+ V ++ Q HAYK V H DF R+
Sbjct: 61 -LVIDGQEVKVKPQDVQRHAYKPKVEHMDFIRI 92
>UNIPROTKB|P68919 [details] [associations]
symbol:rplY "50S ribosomal subunit protein L25"
species:83333 "Escherichia coli K-12" [GO:0008097 "5S rRNA binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019843 "rRNA
binding" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_01336
InterPro:IPR011035 InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:U00008 GO:GO:0008097 PDB:2VHM PDBsum:2VHM PDB:2RDO PDBsum:2RDO
PDB:1ML5 PDBsum:1ML5 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12
PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y
PDBsum:3J11 PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS
PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4 PDB:2AWB
PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM PDB:2QAO
PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK PDB:2QOV
PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L PDB:2Z4N
PDB:3DF2 PDB:3DF4 PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P
PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01
PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ
PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:487D
PDB:4GAR PDB:4GAU PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8
PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC
PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO
PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI
PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1
PDBsum:2VHN PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2
PDBsum:3DF4 PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N
PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T PDBsum:3I20 PDBsum:3I22
PDBsum:3IZT PDBsum:3IZU PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR
PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ
PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S
PDBsum:3R8T PDBsum:487D PDBsum:4GAR PDBsum:4GAU PDB:3BBX
PDBsum:3BBX eggNOG:COG1825 KO:K02897 Gene3D:2.40.240.10
InterPro:IPR020056 SUPFAM:SSF50715 EMBL:D13326 PIR:S16002
RefSeq:NP_416690.1 RefSeq:YP_490425.1 PDB:1B75 PDB:1D6K PDB:1DFU
PDBsum:1B75 PDBsum:1D6K PDBsum:1DFU ProteinModelPortal:P68919
SMR:P68919 DIP:DIP-35885N IntAct:P68919 MINT:MINT-1261165
SWISS-2DPAGE:P68919 PaxDb:P68919 PRIDE:P68919
EnsemblBacteria:EBESCT00000004867 EnsemblBacteria:EBESCT00000017264
GeneID:12934501 GeneID:945618 KEGG:ecj:Y75_p2148 KEGG:eco:b2185
PATRIC:32119725 EchoBASE:EB0878 EcoGene:EG10885
HOGENOM:HOG000277629 OMA:SIELDHD ProtClustDB:PRK05943
BioCyc:EcoCyc:EG10885-MONOMER BioCyc:ECOL316407:JW2173-MONOMER
EvolutionaryTrace:P68919 Genevestigator:P68919 Uniprot:P68919
Length = 94
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 8 RKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSILNLEIYGK 67
RK++G SR LR K P IIYGG + P+ I ++H+ + + K F+S +L + + GK
Sbjct: 9 RKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGK 68
Query: 68 VELVLLRNFQLHAYKKLVLHADFQR 92
V ++ Q H YK + H DF R
Sbjct: 69 EIKVKAQDVQRHPYKPKLQHIDFVR 93
>TIGR_CMR|DET_1454 [details] [associations]
symbol:DET_1454 "ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0006950 "response to
stress" evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0008097 eggNOG:COG1825 KO:K02897 ProtClustDB:PRK05618
Gene3D:2.170.120.20 Gene3D:2.40.240.10 InterPro:IPR020056
InterPro:IPR020057 SUPFAM:SSF50715 TIGRFAMs:TIGR00731
RefSeq:YP_182157.1 ProteinModelPortal:Q3Z6J2 STRING:Q3Z6J2
GeneID:3230573 KEGG:det:DET1454 PATRIC:21609934
HOGENOM:HOG000010174 OMA:HKLTAPF
BioCyc:DETH243164:GJNF-1455-MONOMER Uniprot:Q3Z6J2
Length = 218
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 41/164 (25%), Positives = 76/164 (46%)
Query: 19 LRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKE-TFHSSILNLEIYGKVELVLLRNFQ 77
LR G P I+G + + N + + + + H L L+ K +R Q
Sbjct: 21 LRAQGITPVHIFGHGLKSLALQANTQELESTISRAGSSHLVSLKLDTDKKTRKAFIREIQ 80
Query: 78 LHAYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVKLNSCIISNVISDLYISCLPK 137
H K + H DF +++ ++K+ ++P+HF + E SP +K ++ + L + LP
Sbjct: 81 RHPVKGYLQHVDFYQINLKEKVTAEIPIHF-SGE-SPLLKEKGHKLTAPFTHLTVEALPD 138
Query: 138 NLPKFIEINLEKMEV-NTSIHLSDIKLPRGVSVIHSTEEDPTIA 180
+LP I I L + + +++ DI LP +++ E D +A
Sbjct: 139 DLPPEIHIELSQFDSPEKDLYIKDIVLPGNARILN--EPDLLVA 180
>TIGR_CMR|CJE_0356 [details] [associations]
symbol:CJE_0356 "ribosomal protein L25" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
GO:GO:0008097 eggNOG:COG1825 KO:K02897 ProtClustDB:PRK05618
Gene3D:2.170.120.20 Gene3D:2.40.240.10 InterPro:IPR020056
InterPro:IPR020057 SUPFAM:SSF50715 TIGRFAMs:TIGR00731
RefSeq:YP_178375.1 ProteinModelPortal:Q5HWG0 STRING:Q5HWG0
GeneID:3231118 KEGG:cjr:CJE0356 PATRIC:20042416
HOGENOM:HOG000214906 OMA:MAIVLEA BioCyc:CJEJ195099:GJC0-361-MONOMER
Uniprot:Q5HWG0
Length = 178
Score = 116 (45.9 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 35/163 (21%), Positives = 77/163 (47%)
Query: 8 RKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSILNLEIYGK 67
R+ G ++ L++ G + IYG + + + N ++K+T + I ++++ +
Sbjct: 7 RESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNEFIKEVRKKT--TLIFDVKVGSQ 64
Query: 68 VELVLLRNFQLHAYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVKLNSCIISNVI 127
V++ ++Q + H D + VP+ + I +K +I +
Sbjct: 65 TLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPVKITGTAIG--LKNKGVLIQSK- 121
Query: 128 SDLYISCLPKNLPKFIEINLEKMEVNTSIHLSDIKLPRGVSVI 170
L + C +NLP F E+++ K++V ++ + DI +P GV++I
Sbjct: 122 RRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAGVTMI 164
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 205 189 0.00089 110 3 11 22 0.43 32
31 0.42 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 554 (59 KB)
Total size of DFA: 136 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.08u 0.09s 19.17t Elapsed: 00:00:18
Total cpu time: 19.09u 0.09s 19.18t Elapsed: 00:00:18
Start: Thu Aug 15 12:32:30 2013 End: Thu Aug 15 12:32:48 2013