RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8561
         (205 letters)



>d1feua_ b.53.1.1 (A:) Ribosomal protein TL5 (general stress protein
           CTC) {Thermus thermophilus [TaxId: 274]}
          Length = 185

 Score =  105 bits (264), Expect = 2e-29
 Identities = 45/184 (24%), Positives = 92/184 (50%), Gaps = 10/184 (5%)

Query: 2   KIIAFERKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSILN 61
           ++ A+ R+ +  S    LR+ GK+PG++Y  + +  K+ ++        ++ + H  I+ 
Sbjct: 4   RLKAYYREGEKPS---ALRRAGKLPGLMYNRHLN-RKVYVDLVEFDKVFRQASIHHVIVL 59

Query: 62  LEIYGKVELVLLRNFQLHAYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVKLNSC 121
               G+    L+R   L   ++   H DF    +++ + + VPL F+ +           
Sbjct: 60  ELPDGQSLPTLVRQVNLDKRRRRPEHVDFFV-LSDEPVEMYVPLRFVGTPA---GVRAGG 115

Query: 122 IISNVISDLYISCLPKNLPKFIEINLEKMEVNTSIHLSDIKLPRGVSVIHSTEEDPTIAT 181
           ++  +  D+ +   P+N+P+FIE+++  +E+  S+H SD+KLP GV +      + TIA 
Sbjct: 116 VLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHASDLKLPPGVELAV--SPEETIAA 173

Query: 182 AIIP 185
            + P
Sbjct: 174 VVPP 177


>d2zjrs1 b.53.1.1 (S:1-175) Ribosomal protein TL5 (general stress
           protein CTC) {Deinococcus radiodurans [TaxId: 1299]}
          Length = 175

 Score =  104 bits (260), Expect = 5e-29
 Identities = 29/170 (17%), Positives = 70/170 (41%), Gaps = 5/170 (2%)

Query: 16  SRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSILNLEIYGKVELVLLRN 75
            +       +  + Y   ++ V  +++      A ++++           G+    L++ 
Sbjct: 10  PKQKLDESMIAAVAYNK-ENNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKA 68

Query: 76  FQLHAYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVKLNSCIISNVISDLYISCL 135
            Q+   K+  +H DF  V   + + V VP+H               I+ + +    ++  
Sbjct: 69  VQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNL--QIVAPG 126

Query: 136 PKNLPKFIEINLEKMEVNTSIHLSDIKLPRGVSVIHSTEEDPTIATAIIP 185
           P+ +P+ + +++ KM +   I   DIKLP G ++    + + T+ + + P
Sbjct: 127 PRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLA--ADPELTVVSVLPP 174


>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli
          [TaxId: 562]}
          Length = 94

 Score = 85.0 bits (210), Expect = 2e-22
 Identities = 34/91 (37%), Positives = 50/91 (54%)

Query: 2  KIIAFERKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSILN 61
           I A  RK++G   SR LR   K P IIYGG + P+ I ++H+ + +   K  F+S +L 
Sbjct: 3  TINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLT 62

Query: 62 LEIYGKVELVLLRNFQLHAYKKLVLHADFQR 92
          + + GK   V  ++ Q H YK  + H DF R
Sbjct: 63 IVVDGKEIKVKAQDVQRHPYKPKLQHIDFVR 93


>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase
          (RpiA), lid domain {Archaeon Pyrococcus horikoshii
          [TaxId: 53953]}
          Length = 80

 Score = 26.7 bits (59), Expect = 0.68
 Identities = 11/48 (22%), Positives = 16/48 (33%)

Query: 17 RNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSILNLEI 64
            L        +  G NKD   I+ N N I  A          + +E+
Sbjct: 20 EELSIFNAKAELRMGVNKDGPVITDNGNFIIDAKFPRIDDPLDMEIEL 67


>d2fug51 d.307.1.1 (5:1-196) NADH-quinone oxidoreductase chain 5,
           Nqo5 {Thermus thermophilus [TaxId: 274]}
          Length = 196

 Score = 24.6 bits (53), Expect = 9.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 27  GIIYGGNKDPVKISMNHNMIYHALKKE 53
           GI++ G+ D  KI    ++  H L+K+
Sbjct: 123 GIVFEGHPDLRKILTPEDLEGHPLRKD 149


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 733,382
Number of extensions: 33594
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 8
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)