Query psy8562
Match_columns 205
No_of_seqs 126 out of 1111
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 22:02:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1feu_A 50S ribosomal protein L 100.0 3.6E-58 1.2E-62 385.8 19.7 176 1-187 3-179 (206)
2 2zjr_S 50S ribosomal protein L 100.0 7.1E-57 2.4E-61 383.7 8.7 176 7-190 2-179 (237)
3 1b75_A Protein (50S ribosomal 100.0 7.5E-34 2.6E-38 211.2 2.6 93 1-93 2-94 (94)
4 3lyw_A YBBR family protein; st 94.4 0.18 6.3E-06 36.3 7.5 74 100-182 4-83 (90)
5 2kq1_A BH0266 protein; solutio 80.3 15 0.00051 26.8 9.7 79 97-186 8-99 (119)
6 2l3u_A YBBR family protein; be 71.4 3.4 0.00012 29.4 3.4 76 101-184 5-88 (98)
7 2kps_A Uncharacterized protein 66.8 4.5 0.00015 28.9 3.2 72 102-184 6-86 (98)
8 1q7l_B Aminoacylase-1; catalys 56.3 12 0.0004 25.4 3.7 28 6-34 19-46 (88)
9 2lyx_A Uncharacterized protein 54.6 27 0.00092 24.7 5.4 34 59-92 50-84 (87)
10 2nwf_A Ubiquinol-cytochrome C 43.3 14 0.00047 28.1 2.5 19 142-160 3-21 (141)
11 1bdf_A RNA polymerase alpha su 32.8 25 0.00084 29.1 2.6 27 155-184 109-135 (235)
12 3lu0_A DNA-directed RNA polyme 31.9 22 0.00077 31.0 2.3 40 140-185 97-137 (329)
13 2a6h_A DNA-directed RNA polyme 31.4 37 0.0013 29.4 3.6 40 140-185 96-135 (315)
14 2lht_A Cellophane-induced prot 26.9 20 0.00068 26.1 0.0 29 15-43 51-79 (122)
No 1
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S rRNA-protein complex, cadmium IONS, ribosome; 2.30A {Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T 2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z 2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z 2wrl_Z 2wro_Z ...
Probab=100.00 E-value=3.6e-58 Score=385.79 Aligned_cols=176 Identities=26% Similarity=0.526 Sum_probs=167.6
Q ss_pred CEEEEEEeCCCCchHHHHHHHcCCeeEEEecCCCCceEEEEeHHHHHHHhhcCCcceEEEEEEE-CCeEEEEEEEeEeec
Q psy8562 1 MKIIAFERKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSILNLEI-YGKVELVLLRNFQLH 79 (205)
Q Consensus 1 ~~l~a~~R~~~Gk~~ar~LRr~G~IPaViYG~~~e~~~i~v~~~e~~k~~~~~~~~~~vi~L~i-~G~~~~vlikevQ~~ 79 (205)
++|+|+.|+ |+++|||||+|+|||||||++.+ ++|+++.++|.+++++.+ .+++|+|++ +|+++.||+|++|+|
T Consensus 3 ~~l~a~~R~---k~aarrLRr~G~VPaVvYG~~~e-~~i~v~~~el~~~l~~~~-~~~vi~L~i~~G~~~~vlikdvQ~h 77 (206)
T 1feu_A 3 YRLKAYYRE---GEKPSALRRAGKLPGLMYNRHLN-RKVYVDLVEFDKVFRQAS-IHHVIVLELPDGQSLPTLVRQVNLD 77 (206)
T ss_dssp EEEECEECS---SSCHHHHHHTTEEEEEEECSSCE-EEEEEEHHHHHHHHHHHT-TTSEEEEECTTSCEEEEEEEEEEEC
T ss_pred eEEEEEEeC---ChHHHHHHHCCCceEEEEcCCce-EEEEEcHHHHHHHHhhcC-CcEEEEEEEcCCCEEEEEEEEeEeC
Confidence 368999999 88899999999999999999988 999999999999998765 478999999 999999999999999
Q ss_pred ccCCceeEEEEEEeCCCCeEEEEEeEEEEecCCCcceeeCCeEEEEEecEEEEEEeCCCCCceEEEeccCCCCCCeEEEe
Q psy8562 80 AYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVKLNSCIISNVISDLYISCLPKNLPKFIEINLEKMEVNTSIHLS 159 (205)
Q Consensus 80 pv~~~i~HvDF~~v~~~~~v~v~VPI~~~Ge~~~~gvk~~GG~l~~~~~~i~V~~~p~~IPe~I~vDvs~L~iGd~i~v~ 159 (205)
|+|+.++|+|||++++ ++|+++|||+|+|+ ++|+| .||+|++.+++|+|+|+|.+||++|+||||+|++||+||++
T Consensus 78 pv~~~i~HvDF~~v~~-~~v~v~VPv~~~G~--~~gvk-~GG~l~~~~~~v~V~~~p~~IPe~I~VDvs~L~iGdsi~v~ 153 (206)
T 1feu_A 78 KRRRRPEHVDFFVLSD-EPVEMYVPLRFVGT--PAGVR-AGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHAS 153 (206)
T ss_dssp SSSSCEEEEEEEECCS-SCEEEEEEEEEESC--CHHHH-TTCEEEECCSEEEEEECGGGCCSCEEEECTTCCTTEEEEGG
T ss_pred CCCCCeEEEEEEEECC-EEEEEEeeEEEEcC--ccccc-CceEEEEEEeEEEEEEcHHHCCccEEEEcccCCCCCEEEEe
Confidence 9999999999999999 99999999999996 68999 89999999999999999999999999999999999999999
Q ss_pred ccCCCCCeEEeccCCCCceEEEEECccc
Q psy8562 160 DIKLPRGVSVIHSTEEDPTIATAIIPVN 187 (205)
Q Consensus 160 Dl~lp~gv~~~~~~d~~~vV~sv~~~~~ 187 (205)
||+||+|+++.. |+|++||+|..|+.
T Consensus 154 Dl~lP~gv~~~~--d~d~~V~~V~~~~~ 179 (206)
T 1feu_A 154 DLKLPPGVELAV--SPEETIAAVVPPED 179 (206)
T ss_dssp GSCCCTTCEESS--CTTCEEEEEECSSS
T ss_pred eccCCCCcEEcC--CCCcEEEEEeCCCc
Confidence 999999999773 89999999999984
No 2
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T* 1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S* 3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z 1pnu_T 1pny_T 1vor_W ...
Probab=100.00 E-value=7.1e-57 Score=383.65 Aligned_cols=176 Identities=21% Similarity=0.409 Sum_probs=165.0
Q ss_pred EeCCCCchHHHHHHHcCCeeEEEecCCCCceEEEEeHHHHHHHhhcCCcceEEEEEEECC-eEEEEEEEeEeecccCCce
Q psy8562 7 ERKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSILNLEIYG-KVELVLLRNFQLHAYKKLV 85 (205)
Q Consensus 7 ~R~~~Gk~~ar~LRr~G~IPaViYG~~~e~~~i~v~~~e~~k~~~~~~~~~~vi~L~i~G-~~~~vlikevQ~~pv~~~i 85 (205)
.|+.+||+++||| |+|+||||||| +.+|++|+++.++|.+++++.+ .+++|+|+++| ++++||+|++|+||+|+++
T Consensus 2 ~R~~~GKgaaRrL-r~G~VPaVvYG-g~e~v~i~v~~~el~k~l~~~~-~~~li~L~IdG~~~~~vliKdvQ~hPvk~~i 78 (237)
T 2zjr_S 2 ELTAKPRTPKQKL-DESMIAAVAYN-KENNVSFALDRKAFDRAFRQQS-TTGLFDITVEGGETFPALVKAVQMDKRKRAP 78 (237)
T ss_dssp CCCBCCSCCHHHH-SSSCCCEEEES-SSCCCCCBCCHHHHHHHHHHHT-TSCCCBCCCTTCCCCBCCEEEEEECSSSCCE
T ss_pred cccccCcHHHHHH-hCCCCCEEEeC-CCCCEEEEECHHHHHHHHHhcC-CcEEEEEEECCceeEEEEEEEEEecCCCCCe
Confidence 5999999999999 99999999999 8999999999999999998755 47899999999 9889999999999999999
Q ss_pred eEEEEEEeCCCCeEEEEEeEEEEecCCCcceeeCCeEEEEEecEEEEEE-eCCCCCceEEEeccCCCCCCeEEEeccCCC
Q psy8562 86 LHADFQRVDTEKKIHVKVPLHFINSEISPAVKLNSCIISNVISDLYISC-LPKNLPKFIEINLEKMEVNTSIHLSDIKLP 164 (205)
Q Consensus 86 ~HvDF~~v~~~~~v~v~VPI~~~Ge~~~~gvk~~GG~l~~~~~~i~V~~-~p~~IPe~I~vDvs~L~iGd~i~v~Dl~lp 164 (205)
+|+|||+++++++|+++|||+|+|+ ++|+| +||+|++.+++|+|+| +|.+||++|+||||+|++||+||++||+||
T Consensus 79 lHVDF~~V~~~ekV~v~VPV~~vGe--~~GvK-~GGvL~~~~~eveV~~~lP~~IPe~IeVDVs~LeiGdsI~v~DL~LP 155 (237)
T 2zjr_S 79 IHVDFYMVTYGEPVEVSVPVHTTGR--SQGEV-QGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLP 155 (237)
T ss_dssp EEEEEECCCSSCCCEEEEECEEESC--CTTTT-TTSEEECSCSEEEEECCCTTCCCSCCEEECTTCCSSCEEETTTSCCS
T ss_pred EEEEEEEECCCCEEEEEEeEEEecC--Ccccc-CCcEEEEEEeEEEEEEeCHHHCCccEEEEcccCCCCCEEEeeeccCC
Confidence 9999999999999999999999996 68999 8999999999999999 999999999999999999999999999999
Q ss_pred CCeEEeccCCCCceEEEEECcccccc
Q psy8562 165 RGVSVIHSTEEDPTIATAIIPVNTLE 190 (205)
Q Consensus 165 ~gv~~~~~~d~~~vV~sv~~~~~~~~ 190 (205)
+|+++.. |++++||+|..|+.+.+
T Consensus 156 eGv~l~~--d~d~vVvsV~~p~~~~e 179 (237)
T 2zjr_S 156 EGCTLAA--DPELTVVSVLPPRLTAE 179 (237)
T ss_dssp TTCCCCS--CTTCEEEEEECCC----
T ss_pred CCcEEcC--CCCcEEEEEEcCCCCCC
Confidence 9999763 79999999999986544
No 3
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=99.98 E-value=7.5e-34 Score=211.16 Aligned_cols=93 Identities=37% Similarity=0.574 Sum_probs=88.5
Q ss_pred CEEEEEEeCCCCchHHHHHHHcCCeeEEEecCCCCceEEEEeHHHHHHHhhcCCcceEEEEEEECCeEEEEEEEeEeecc
Q psy8562 1 MKIIAFERKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSILNLEIYGKVELVLLRNFQLHA 80 (205)
Q Consensus 1 ~~l~a~~R~~~Gk~~ar~LRr~G~IPaViYG~~~e~~~i~v~~~e~~k~~~~~~~~~~vi~L~i~G~~~~vlikevQ~~p 80 (205)
++|+|+.|+.+||+++|+||++|+|||||||++.+|++|+++.++|.+++++.++.+++|+|+++|+++.|++||+|+||
T Consensus 2 ~~l~a~~R~~~Gk~~arrLRr~G~vPaVvYG~~~e~~~i~v~~~~~~~~l~~~~~~~~~i~L~i~G~~~~vlikdvQ~hp 81 (94)
T 1b75_A 2 FTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHP 81 (94)
T ss_dssp CCEEECSSCCSSSSSSSSTTTTTBCCEEEECSSSCCEEECCBSHHHHHHHTTTHHHHTCEEEEESSCEEEECCSEEECCS
T ss_pred eEEEEEEecccCChHHHHHHHCCCceEEEECCCCCCEEEEECHHHHHHHHhccCcceEEEEEEECCEEEEEEEEEEEeCC
Confidence 47999999999999999999999999999999999999999999999999887766789999999999999999999999
Q ss_pred cCCceeEEEEEEe
Q psy8562 81 YKKLVLHADFQRV 93 (205)
Q Consensus 81 v~~~i~HvDF~~v 93 (205)
+++.++|+|||+|
T Consensus 82 ~~~~i~HvDF~~v 94 (94)
T 1b75_A 82 YKPKLQHIDFVRA 94 (94)
T ss_dssp SSCCCCEEEEEBC
T ss_pred CCCCeEEEEEEEC
Confidence 9999999999985
No 4
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=94.37 E-value=0.18 Score=36.30 Aligned_cols=74 Identities=8% Similarity=0.125 Sum_probs=47.5
Q ss_pred EEEEeEEEEecCCCcceeeCCeEEEEEecEEEEEEe--CCCC-Cc--eEEEeccCCCCCC-eEEEeccCCCCCeEEeccC
Q psy8562 100 HVKVPLHFINSEISPAVKLNSCIISNVISDLYISCL--PKNL-PK--FIEINLEKMEVNT-SIHLSDIKLPRGVSVIHST 173 (205)
Q Consensus 100 ~v~VPI~~~Ge~~~~gvk~~GG~l~~~~~~i~V~~~--p~~I-Pe--~I~vDvs~L~iGd-~i~v~Dl~lp~gv~~~~~~ 173 (205)
+.+|||.|.|.+ .|.. +.....+++|+.. ...+ +. ...||+|++..|+ .+.|. +.+|.|+++.. .
T Consensus 4 tytVPv~~~Nlp--~~~~-----v~~~~~tV~V~v~G~r~~~~~~di~A~VDLsg~~~G~~~~~V~-v~~P~G~~lv~-v 74 (90)
T 3lyw_A 4 TLTLSLIAKNTP--ANSM-----IMTKLPSVRVKTEGYNPSINVNELFAYVDLSGSEPGEHDYEVK-VEPIPNIKIVE-I 74 (90)
T ss_dssp EEEEEEEEESCC--TTEE-----ECSCCCEEEEEEEECCTTCCSTTCEEEEECTTCCSEEEEEECE-ECCCTTEEEEE-E
T ss_pred eEEeeEEEeeCC--CCcE-----EecCCCEEEEEEEecCcCCChHHEEEEEECcCCCCCcEeEEEE-EECCCCCEEEE-E
Confidence 579999999964 3332 2333346665553 3222 11 4689999999998 44455 89999999443 3
Q ss_pred CCCceEEEE
Q psy8562 174 EEDPTIATA 182 (205)
Q Consensus 174 d~~~vV~sv 182 (205)
.|+.+-..+
T Consensus 75 sP~~V~~~~ 83 (90)
T 3lyw_A 75 SPRVVTLQL 83 (90)
T ss_dssp ESSEEEEEE
T ss_pred ccceEEEEe
Confidence 677766554
No 5
>2kq1_A BH0266 protein; solution NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus halodurans}
Probab=80.25 E-value=15 Score=26.83 Aligned_cols=79 Identities=9% Similarity=0.019 Sum_probs=51.9
Q ss_pred CeEEEEEeEEEEecCCCcceeeCCeEEEEEecEEEEEEeC--C---CC---Cc--eEEEeccCCCCCC---eEEEeccCC
Q psy8562 97 KKIHVKVPLHFINSEISPAVKLNSCIISNVISDLYISCLP--K---NL---PK--FIEINLEKMEVNT---SIHLSDIKL 163 (205)
Q Consensus 97 ~~v~v~VPI~~~Ge~~~~gvk~~GG~l~~~~~~i~V~~~p--~---~I---Pe--~I~vDvs~L~iGd---~i~v~Dl~l 163 (205)
...-..|||.+.+.+ .|-.+...-.+++|.... . .+ ++ ...+|+|+|..|. .+.+. .+
T Consensus 8 ~~~~~~VPV~v~~~~-------~~~~v~~~p~~V~V~l~G~~~~l~~~~~~~~~i~~~vDLs~l~~G~~~vpv~v~--~l 78 (119)
T 2kq1_A 8 NLSLGELELTVLYDE-------ERYDIVEQTETVQVDLEGPRGVLTVFRFARPSYEVFVDLTEAGEGSHTVDVEHR--GF 78 (119)
T ss_dssp EEEEEEEEEEEECCT-------TTCEEEECCCEEEEEEEECHHHHHHHTTSCCCCEEEEECTTCCBEEEEEECEEE--SS
T ss_pred eEEEEEeeEEEEECC-------CCEEEECCCCEEEEEEEECHHHhhhccccccCEEEEEECccCCCCeEEEEEEEe--cC
Confidence 445678999999853 234444445566665532 1 11 22 5689999999997 44444 48
Q ss_pred CCCeEEeccCCCCceEEEEECcc
Q psy8562 164 PRGVSVIHSTEEDPTIATAIIPV 186 (205)
Q Consensus 164 p~gv~~~~~~d~~~vV~sv~~~~ 186 (205)
|+|+++.. +|..+-+++....
T Consensus 79 p~~v~v~v--~P~~V~V~i~~~~ 99 (119)
T 2kq1_A 79 PGDLAVTV--EPRMARVQLEERQ 99 (119)
T ss_dssp CTTSEEEE--SCCEEEEEEESCC
T ss_pred CCCeEEEE--cCCEEEEEEEEEE
Confidence 99999543 6888888887543
No 6
>2l3u_A YBBR family protein; beta strand, figure eight, figure 8, structural genomics, PS biology, protein structure initiative; NMR {Desulfitobacterium hafniense}
Probab=71.39 E-value=3.4 Score=29.39 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=45.6
Q ss_pred EEEeEEEEecCCCcceeeCCeEEEEEecEEEEEEe--CC---CC-Cc--eEEEeccCCCCCCeEEEeccCCCCCeEEecc
Q psy8562 101 VKVPLHFINSEISPAVKLNSCIISNVISDLYISCL--PK---NL-PK--FIEINLEKMEVNTSIHLSDIKLPRGVSVIHS 172 (205)
Q Consensus 101 v~VPI~~~Ge~~~~gvk~~GG~l~~~~~~i~V~~~--p~---~I-Pe--~I~vDvs~L~iGd~i~v~Dl~lp~gv~~~~~ 172 (205)
.+|||.+.|.+ .+.. +...-.++.|.+. .. .+ ++ .+.+|+|+|..|..-.-=.+.+|.|+++..
T Consensus 5 ~~VPV~v~n~~--~~~~-----v~~~p~~V~V~v~G~~~~l~~l~~~di~~~vDls~l~~G~~~v~v~v~~P~~~~~v~- 76 (98)
T 2l3u_A 5 YDLPIVLRNLP--EDLV-----LEKPLPEVSVTIRAYPEILNNLTKEQISLWIDATGKAVGEHTVKIYWQLPAGIEMVS- 76 (98)
T ss_dssp CCCSCEEESCC--TTEE-----ESSCCCCCCCEEECCHHHHTTCCGGGCBCEEECSSCCSBCCEECCCCBCSSSCEEEE-
T ss_pred EecCEEEEeCC--CceE-----EEcCCCEEEEEEEECHHHhhhCChhhEEEEEEecCCcCceEEEeEEEECCCCcEEEE-
Confidence 46899999953 3444 2223344444443 21 11 11 567899999999743333578899998432
Q ss_pred CCCCceEEEEEC
Q psy8562 173 TEEDPTIATAII 184 (205)
Q Consensus 173 ~d~~~vV~sv~~ 184 (205)
-.|..+-++|..
T Consensus 77 i~P~~V~V~i~e 88 (98)
T 2l3u_A 77 IPDVTYTLKAKE 88 (98)
T ss_dssp CCCEECCEEECC
T ss_pred eCCCEEEEEEec
Confidence 367766666543
No 7
>2kps_A Uncharacterized protein; beta strand, figure eight, figure 8, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51} PDB: 2l3u_A
Probab=66.79 E-value=4.5 Score=28.93 Aligned_cols=72 Identities=14% Similarity=0.264 Sum_probs=44.9
Q ss_pred EEeEEEEecCCCcceeeCCeEEEEEecEEEEEE--eCCCC----Cc--eEEEeccCCCCCC-eEEEeccCCCCCeEEecc
Q psy8562 102 KVPLHFINSEISPAVKLNSCIISNVISDLYISC--LPKNL----PK--FIEINLEKMEVNT-SIHLSDIKLPRGVSVIHS 172 (205)
Q Consensus 102 ~VPI~~~Ge~~~~gvk~~GG~l~~~~~~i~V~~--~p~~I----Pe--~I~vDvs~L~iGd-~i~v~Dl~lp~gv~~~~~ 172 (205)
.|||.+.|.+ .|.. +.....++.|+. ..+.| ++ ...+|+|+|..|. .+.+ .+.+|.|+++.
T Consensus 6 ~VpI~v~nl~--~~~~-----v~~~~~~V~V~v~G~~~~l~~l~~~di~a~vDLs~l~~G~~~vpv-~v~lP~gv~vv-- 75 (98)
T 2kps_A 6 DLPIVLRNLP--EDLV-----LEKPLPEVSVTIRAYPEILNNLTKEQISLWIDATGKAVGEHTVKI-YWQLPAGIEMV-- 75 (98)
T ss_dssp GSCCEECSCC--TTEE-----ESCCCCCCCCCCCCCHHHHHTCCTTTSBCEECCTTCCSSCEEEEC-CCBCSSCCCCC--
T ss_pred ecCEEEEeCC--CCeE-----EECCCCEEEEEEEECHHHHhhCChhhEEEEEECCCCCCCeEEEeE-EEECCCCEEEE--
Confidence 4899999953 3443 332335555554 22211 33 3589999999998 5555 68899999966
Q ss_pred CCCCceEEEEEC
Q psy8562 173 TEEDPTIATAII 184 (205)
Q Consensus 173 ~d~~~vV~sv~~ 184 (205)
....+=+++..
T Consensus 76 -~~~~v~vtl~~ 86 (98)
T 2kps_A 76 -SIPDVTYTLKA 86 (98)
T ss_dssp -CCCEEEECEEE
T ss_pred -ecCcEEEEEEE
Confidence 24455555543
No 8
>1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=56.29 E-value=12 Score=25.45 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=22.2
Q ss_pred EEeCCCCchHHHHHHHcCCeeEEEecCCC
Q psy8562 6 FERKKKGTSFSRNLRKIGKVPGIIYGGNK 34 (205)
Q Consensus 6 ~~R~~~Gk~~ar~LRr~G~IPaViYG~~~ 34 (205)
.+....|...+|.+++.| +|++.||.+.
T Consensus 19 ~~~~~~g~TDar~~~~~g-ip~v~fGPg~ 46 (88)
T 1q7l_B 19 EPEIMPAAGDNRYIRAVG-VPALGFSPMN 46 (88)
T ss_dssp EEEECCSCSHHHHHHHTT-CCEEEECCCC
T ss_pred EeeeeceeCcHHHHHHcC-CCEEEECCCC
Confidence 344456777899999886 8999999874
No 9
>2lyx_A Uncharacterized protein YQZG; PF13028, DUF3889, structural genomics, unknown function; NMR {Bacillus subtilis subsp}
Probab=54.63 E-value=27 Score=24.75 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=26.1
Q ss_pred EEEEEE-CCeEEEEEEEeEeecccCCceeEEEEEE
Q psy8562 59 ILNLEI-YGKVELVLLRNFQLHAYKKLVLHADFQR 92 (205)
Q Consensus 59 vi~L~i-~G~~~~vlikevQ~~pv~~~i~HvDF~~ 92 (205)
.|.|.+ +|.+...+.-+|-+||.|++++-++|..
T Consensus 50 ~Fklwl~e~~kefgV~V~I~f~p~T~kv~sI~~~E 84 (87)
T 2lyx_A 50 QYHLTLREGSKEFGVFVTISFDPYSQKVNKIAILE 84 (87)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEEEeCCEEEEEEEEEEEECCCCeEEEEEEEE
Confidence 466666 3445556666899999999999999975
No 10
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=43.34 E-value=14 Score=28.09 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=16.9
Q ss_pred eEEEeccCCCCCCeEEEec
Q psy8562 142 FIEINLEKMEVNTSIHLSD 160 (205)
Q Consensus 142 ~I~vDvs~L~iGd~i~v~D 160 (205)
.++||+|.|+.|+.++|.=
T Consensus 3 ~~~vd~s~l~~g~~~~v~w 21 (141)
T 2nwf_A 3 SIFVDVSSVEPGVQLTVKF 21 (141)
T ss_dssp CEEEECTTCCTTEEEEEEE
T ss_pred CEEEecccCCCCCEEEEEE
Confidence 5899999999999998863
No 11
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=32.83 E-value=25 Score=29.09 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=24.5
Q ss_pred eEEEeccCCCCCeEEeccCCCCceEEEEEC
Q psy8562 155 SIHLSDIKLPRGVSVIHSTEEDPTIATAII 184 (205)
Q Consensus 155 ~i~v~Dl~lp~gv~~~~~~d~~~vV~sv~~ 184 (205)
.++.+||..|.++++. +||..||++..
T Consensus 109 ~VtA~Di~~~~~v~iv---npd~~IatL~~ 135 (235)
T 1bdf_A 109 PVTAADITHDGDVEIV---KPQHVICHLTD 135 (235)
T ss_dssp EEEGGGBCCCSSCEES---CTTCEEEEECS
T ss_pred EEEhHhCCCCCCCEEc---CCCeEEEEECC
Confidence 7999999999999987 69999999976
No 12
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=31.94 E-value=22 Score=30.99 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=32.5
Q ss_pred CceEEEeccCCCCCCeEEEeccCCCCCeEEeccCCCCceEEEEE-Cc
Q psy8562 140 PKFIEINLEKMEVNTSIHLSDIKLPRGVSVIHSTEEDPTIATAI-IP 185 (205)
Q Consensus 140 Pe~I~vDvs~L~iGd~i~v~Dl~lp~gv~~~~~~d~~~vV~sv~-~~ 185 (205)
|..+.+++.+ -..++.+||.+|.++++. +|+..||++. ..
T Consensus 97 ~~~~~L~~~G---p~~VtA~DI~~~~~veiv---npd~~IatL~~~~ 137 (329)
T 3lu0_A 97 EVILTLNKSG---IGPVTAADITHDGDVEIV---KPQHVICHLTDEN 137 (329)
T ss_dssp CEEEEECCCS---SSCEETTSSCCCSSEECS---CTTCEEECBCSSC
T ss_pred eEEEEEEEeC---CeEEEeeeeccCCCCEEe---CCCcEEEEEccCC
Confidence 6677777754 247999999999999976 6999999998 44
No 13
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=31.41 E-value=37 Score=29.37 Aligned_cols=40 Identities=18% Similarity=0.108 Sum_probs=30.7
Q ss_pred CceEEEeccCCCCCCeEEEeccCCCCCeEEeccCCCCceEEEEECc
Q psy8562 140 PKFIEINLEKMEVNTSIHLSDIKLPRGVSVIHSTEEDPTIATAIIP 185 (205)
Q Consensus 140 Pe~I~vDvs~L~iGd~i~v~Dl~lp~gv~~~~~~d~~~vV~sv~~~ 185 (205)
|-.+.+++.+= ..++.+||..|.++++. +|+..||++...
T Consensus 96 ~~~~~L~v~gp---~~VtA~Di~~~~~v~iv---npd~~IatL~~g 135 (315)
T 2a6h_A 96 TVTLLLKAEGP---KEVKARDFLPVADVEIM---NPDLHIATLEEG 135 (315)
T ss_dssp BCCEEEEEESS---CEEEGGGSCCCTTEEES---CTTCEEEEBCSS
T ss_pred eEEEEEEEecC---eeEEhhhCCcCCCcEEc---CCCeEEEEECCC
Confidence 34455555531 47999999999999987 699999999754
No 14
>2lht_A Cellophane-induced protein 1; secreted repeat domain, cell adhesion; NMR {Venturia inaequalis}
Probab=26.91 E-value=20 Score=26.14 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=21.7
Q ss_pred HHHHHHHcCCeeEEEecCCCCceEEEEeH
Q psy8562 15 FSRNLRKIGKVPGIIYGGNKDPVKISMNH 43 (205)
Q Consensus 15 ~ar~LRr~G~IPaViYG~~~e~~~i~v~~ 43 (205)
+..+--|+-+-|+++||.+..|+-+.+-.
T Consensus 51 ac~k~irekykp~~vygydgkpld~~fc~ 79 (122)
T 2lht_A 51 ACAKGIREKYKPAVVYGYDGKPLDLGFCT 79 (122)
Confidence 34455567899999999998887776543
Done!