Query psy8562
Match_columns 205
No_of_seqs 126 out of 1111
Neff 6.3
Searched_HMMs 13730
Date Fri Aug 16 22:02:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8562.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8562hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1feua_ b.53.1.1 (A:) Ribosoma 100.0 3.2E-56 2.3E-60 366.5 19.9 180 1-191 3-183 (185)
2 d2zjrs1 b.53.1.1 (S:1-175) Rib 100.0 2.2E-55 1.6E-59 358.7 6.8 173 1-186 1-175 (175)
3 d1dfup_ b.53.1.1 (P:) Ribosoma 100.0 1.5E-33 1.1E-37 207.8 11.0 92 1-92 2-93 (94)
4 d1bdfa2 d.181.1.1 (A:53-178) R 77.4 0.72 5.2E-05 33.2 2.9 50 128-184 34-83 (126)
5 d1zaka2 g.41.2.1 (A:128-158) M 75.5 0.21 1.5E-05 27.7 -0.4 17 77-93 3-19 (31)
6 d1smya2 d.181.1.1 (A:50-172) R 63.3 0.61 4.5E-05 33.4 -0.3 64 114-186 20-87 (123)
7 d3cx5e1 b.33.1.1 (E:87-215) IS 50.6 4.3 0.00032 28.9 2.5 18 142-159 7-24 (129)
8 d1riea_ b.33.1.1 (A:) ISP subu 47.1 5 0.00037 28.5 2.4 18 142-159 4-21 (127)
9 d1htwa_ c.37.1.18 (A:) Hypothe 37.6 3.4 0.00025 30.5 0.1 26 71-98 69-94 (158)
10 d1y8xb1 c.111.1.2 (B:349-440) 20.1 42 0.0031 22.2 3.3 21 149-169 68-88 (92)
No 1
>d1feua_ b.53.1.1 (A:) Ribosomal protein TL5 (general stress protein CTC) {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=3.2e-56 Score=366.51 Aligned_cols=180 Identities=25% Similarity=0.518 Sum_probs=165.5
Q ss_pred CEEEEEEeCCCCchHHHHHHHcCCeeEEEecCCCCceEEEEeHHHHHHHhhcCCcceEEEEEEE-CCeEEEEEEEeEeec
Q psy8562 1 MKIIAFERKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSILNLEI-YGKVELVLLRNFQLH 79 (205)
Q Consensus 1 ~~l~a~~R~~~Gk~~ar~LRr~G~IPaViYG~~~e~~~i~v~~~e~~k~~~~~~~~~~vi~L~i-~G~~~~vlikevQ~~ 79 (205)
++|+|+.|+..|+ ++|||+|+|||||||++. +.+++++.++|.++++..++ ++++.|.+ ||+++.||+|++|+|
T Consensus 3 ~~l~a~~Re~~~~---~~LRr~G~VPaViYG~~~-~~~i~v~~~e~~k~~~~~~~-~~~i~l~~~dg~~~~vlikevQ~~ 77 (185)
T d1feua_ 3 YRLKAYYREGEKP---SALRRAGKLPGLMYNRHL-NRKVYVDLVEFDKVFRQASI-HHVIVLELPDGQSLPTLVRQVNLD 77 (185)
T ss_dssp EEEECEECSSSCH---HHHHHTTEEEEEEECSSC-EEEEEEEHHHHHHHHHHHTT-TSEEEEECTTSCEEEEEEEEEEEC
T ss_pred EEEEEEEecCCCc---hHHHhCCCceEEEECCCC-CcCEEecchHHHhHhhhhhc-cceEEEEeecchhhhheeeeeEec
Confidence 4799999997665 469999999999999875 58999999999999998876 46777888 899999999999999
Q ss_pred ccCCceeEEEEEEeCCCCeEEEEEeEEEEecCCCcceeeCCeEEEEEecEEEEEEeCCCCCceEEEeccCCCCCCeEEEe
Q psy8562 80 AYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVKLNSCIISNVISDLYISCLPKNLPKFIEINLEKMEVNTSIHLS 159 (205)
Q Consensus 80 pv~~~i~HvDF~~v~~~~~v~v~VPI~~~Ge~~~~gvk~~GG~l~~~~~~i~V~~~p~~IPe~I~vDvs~L~iGd~i~v~ 159 (205)
|++++++|+|||+++ +++|+++|||+|+|+ |+|+| .||+|++.+++|+|+|+|++||++|+||||+|++||+||++
T Consensus 78 pv~~~i~HvDF~~v~-~~~v~v~VPv~~~G~--~~gvk-~GG~l~~~~~~i~v~~~p~~IPe~i~VDvs~L~igd~i~v~ 153 (185)
T d1feua_ 78 KRRRRPEHVDFFVLS-DEPVEMYVPLRFVGT--PAGVR-AGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHAS 153 (185)
T ss_dssp SSSSCEEEEEEEECC-SSCEEEEEEEEEESC--CHHHH-TTCEEEECCSEEEEEECGGGCCSCEEEECTTCCTTEEEEGG
T ss_pred ccccceeEEEEeecc-CceEEEEeceEEeec--ccccc-cccEEEEEEeeeEEEeeccCCCeEEEEEcccCCCCCeEEEE
Confidence 999999999999986 999999999999995 79999 89999999999999999999999999999999999999999
Q ss_pred ccCCCCCeEEeccCCCCceEEEEECccccccC
Q psy8562 160 DIKLPRGVSVIHSTEEDPTIATAIIPVNTLES 191 (205)
Q Consensus 160 Dl~lp~gv~~~~~~d~~~vV~sv~~~~~~~~~ 191 (205)
||++|+|+++.. +++++||+|.+|+.+++.
T Consensus 154 Dl~lp~gv~~~~--d~~~~vv~v~~p~~~ee~ 183 (185)
T d1feua_ 154 DLKLPPGVELAV--SPEETIAAVVPPEDVEKL 183 (185)
T ss_dssp GSCCCTTCEESS--CTTCEEEEEECSSSSSCC
T ss_pred eecCCCCcEEcc--CCCCeEEEEeCCCccccc
Confidence 999999999774 899999999999975443
No 2
>d2zjrs1 b.53.1.1 (S:1-175) Ribosomal protein TL5 (general stress protein CTC) {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00 E-value=2.2e-55 Score=358.67 Aligned_cols=173 Identities=20% Similarity=0.420 Sum_probs=161.4
Q ss_pred CEEEEEEeCCCCchHHHHHHHcCCeeEEEecCCCCceEEEEeHHHHHHHhhcCCcceEEEEEEECC-eEEEEEEEeEeec
Q psy8562 1 MKIIAFERKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSILNLEIYG-KVELVLLRNFQLH 79 (205)
Q Consensus 1 ~~l~a~~R~~~Gk~~ar~LRr~G~IPaViYG~~~e~~~i~v~~~e~~k~~~~~~~~~~vi~L~i~G-~~~~vlikevQ~~ 79 (205)
|+|+|++|+ +|++|++|+||||+||++ +++++++++++|.++++..+ .+++|+|+++| ++++||+|++|+|
T Consensus 1 ~~l~a~~r~------~k~~R~~G~VPaViYG~~-~~~~i~v~~~~l~k~l~~~~-~~~li~l~i~g~~~~~vlikevQ~~ 72 (175)
T d2zjrs1 1 MELTAKPRT------PKQKLDESMIAAVAYNKE-NNVSFALDRKAFDRAFRQQS-TTGLFDITVEGGETFPALVKAVQMD 72 (175)
T ss_dssp CCCCBCCSC------CHHHHSSSCCCEEEESSS-CCCCCBCCHHHHHHHHHHHT-TSCCCBCCCTTCCCCBCCEEEEEEC
T ss_pred CeeEeccch------HHHHhhCCCCCEEEECCC-CCEEEEEcHHHHHHHHHhcC-cceEEEEEecCCceEEEEehhhhhh
Confidence 467777774 689999999999999976 89999999999999999776 57899999987 6789999999999
Q ss_pred ccCCceeEEEEEEeCCCCeEEEEEeEEEEecCCCcceeeCCeEEEEEecEEEEEEe-CCCCCceEEEeccCCCCCCeEEE
Q psy8562 80 AYKKLVLHADFQRVDTEKKIHVKVPLHFINSEISPAVKLNSCIISNVISDLYISCL-PKNLPKFIEINLEKMEVNTSIHL 158 (205)
Q Consensus 80 pv~~~i~HvDF~~v~~~~~v~v~VPI~~~Ge~~~~gvk~~GG~l~~~~~~i~V~~~-p~~IPe~I~vDvs~L~iGd~i~v 158 (205)
|++++++|+|||+++++++|+++|||+|+|+ |+|+| .||+|++.+++|++.|. |++||++|++|||+|++||+||+
T Consensus 73 pv~~~i~HvDF~~v~~~~~i~v~VPi~~~G~--~~gvk-~Gg~l~~~~~~i~v~~~~P~~IP~~i~vDvs~L~iGd~i~v 149 (175)
T d2zjrs1 73 KRKRAPIHVDFYMVTYGEPVEVSVPVHTTGR--SQGEV-QGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITA 149 (175)
T ss_dssp SSSCCEEEEEEECCCSSCCCEEEEECEEESC--CTTTT-TTSEEECSCSEEEEECCCTTCCCSCCEEECTTCCSSCEEET
T ss_pred hccCceeEEEEEecCCCcEEEEEEEEEeecc--ccccc-ccceeeeeehhhhhhccChhhCCceEEecchhccCCCeEEE
Confidence 9999999999999999999999999999996 68999 89999999999999995 99999999999999999999999
Q ss_pred eccCCCCCeEEeccCCCCceEEEEECcc
Q psy8562 159 SDIKLPRGVSVIHSTEEDPTIATAIIPV 186 (205)
Q Consensus 159 ~Dl~lp~gv~~~~~~d~~~vV~sv~~~~ 186 (205)
+||++|+|+++.. |+|.+||+|.+||
T Consensus 150 ~Dl~lp~gv~~~~--d~~~~v~~V~~pr 175 (175)
T d2zjrs1 150 GDIKLPEGCTLAA--DPELTVVSVLPPR 175 (175)
T ss_dssp TTSCCSTTCCCCS--CTTCEEEEEECCC
T ss_pred EeecCCCCcEEcc--CCCcEEEEEeCCC
Confidence 9999999999763 8999999999986
No 3
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.5e-33 Score=207.84 Aligned_cols=92 Identities=37% Similarity=0.580 Sum_probs=89.0
Q ss_pred CEEEEEEeCCCCchHHHHHHHcCCeeEEEecCCCCceEEEEeHHHHHHHhhcCCcceEEEEEEECCeEEEEEEEeEeecc
Q psy8562 1 MKIIAFERKKKGTSFSRNLRKIGKVPGIIYGGNKDPVKISMNHNMIYHALKKETFHSSILNLEIYGKVELVLLRNFQLHA 80 (205)
Q Consensus 1 ~~l~a~~R~~~Gk~~ar~LRr~G~IPaViYG~~~e~~~i~v~~~e~~k~~~~~~~~~~vi~L~i~G~~~~vlikevQ~~p 80 (205)
++|+|++|+.+||+++|+||++|+|||||||++.+|++++++.++|.+++++.++.+.+++|+++|+++.|++||+|+||
T Consensus 2 ~~L~a~~R~~~Gk~~~r~lRr~G~vPaViYG~~~~~~~i~v~~~~l~~~l~~~~~~~~~i~l~~~g~~~~vlikevQ~~p 81 (94)
T d1dfup_ 2 FTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHP 81 (94)
T ss_dssp CEEECEECSCCSHHHHHHHHHTTEEEEEEECSSSCCEEEEEEHHHHHHHTTSGGGGTSCBEEEETTEECCEEEEEEEECS
T ss_pred eEEEEEEeccCCcHHHHHHHHcCCccEEEECCCCCCcEEEecHHHHhhhhcccccccceEEEEECCeEEEeeheeeeecC
Confidence 58999999999999999999999999999999999999999999999999987777889999999999999999999999
Q ss_pred cCCceeEEEEEE
Q psy8562 81 YKKLVLHADFQR 92 (205)
Q Consensus 81 v~~~i~HvDF~~ 92 (205)
++++++|||||+
T Consensus 82 v~~~i~HvDF~r 93 (94)
T d1dfup_ 82 YKPKLQHIDFVR 93 (94)
T ss_dssp SSSCEEEEEEEE
T ss_pred CCCCEEEEeeec
Confidence 999999999998
No 4
>d1bdfa2 d.181.1.1 (A:53-178) RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=77.40 E-value=0.72 Score=33.19 Aligned_cols=50 Identities=12% Similarity=0.154 Sum_probs=36.6
Q ss_pred cEEEEEEeCCCCCceEEEeccCCCCCCeEEEeccCCCCCeEEeccCCCCceEEEEEC
Q psy8562 128 SDLYISCLPKNLPKFIEINLEKMEVNTSIHLSDIKLPRGVSVIHSTEEDPTIATAII 184 (205)
Q Consensus 128 ~~i~V~~~p~~IPe~I~vDvs~L~iGd~i~v~Dl~lp~gv~~~~~~d~~~vV~sv~~ 184 (205)
+.|.++.. ..-+..+.+++++= ..++.+||.+|.++++. +||..+|++..
T Consensus 34 K~i~~k~~-~~~~~~~~l~~~gp---~~VtA~di~~~~~veIv---Npd~~Iatlt~ 83 (126)
T d1bdfa2 34 KGLAVRVQ-GKDEVILTLNKSGI---GPVTAADITHDGDVEIV---KPQHVICHLTD 83 (126)
T ss_dssp HTCCEECS-SCSEEEEEEEEESS---EEEEGGGBCCCSSCEES---CTTCEEEEECS
T ss_pred ccceEEec-CCCceEEEEEecCc---ccEEEecccCCCCEEEe---CCceEEEEEec
Confidence 44555533 23455666666653 36999999999999987 69999999964
No 5
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=75.49 E-value=0.21 Score=27.66 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=14.0
Q ss_pred eecccCCceeEEEEEEe
Q psy8562 77 QLHAYKKLVLHADFQRV 93 (205)
Q Consensus 77 Q~~pv~~~i~HvDF~~v 93 (205)
..||+||+++|+-|..-
T Consensus 3 R~DP~TG~iYH~~f~pp 19 (31)
T d1zaka2 3 RLDPVTGKIYHLKYSPP 19 (31)
T ss_dssp EECTTTCCEEESSSSCC
T ss_pred cCCCCCCcEeEEecCCC
Confidence 36999999999988643
No 6
>d1smya2 d.181.1.1 (A:50-172) RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=63.35 E-value=0.61 Score=33.38 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=41.4
Q ss_pred cceeeCCeEEEEE--ecEEEEEEeCCCCCc--eEEEeccCCCCCCeEEEeccCCCCCeEEeccCCCCceEEEEECcc
Q psy8562 114 PAVKLNSCIISNV--ISDLYISCLPKNLPK--FIEINLEKMEVNTSIHLSDIKLPRGVSVIHSTEEDPTIATAIIPV 186 (205)
Q Consensus 114 ~gvk~~GG~l~~~--~~~i~V~~~p~~IPe--~I~vDvs~L~iGd~i~v~Dl~lp~gv~~~~~~d~~~vV~sv~~~~ 186 (205)
+||+ .. +++.. ++.|.++... .-++ .+.++.++ . ..++.+||.+|.++++. +||+.+|++....
T Consensus 20 ~GV~-ED-V~eIiLNLK~i~~~~~~-~~~~~~~~~l~~~G--p-~~VtA~Di~~~~~veIv---Npd~~IaTl~~~~ 87 (123)
T d1smya2 20 PGVK-ED-VVEIILNLKELVVRFLN-PSLQTVTLLLKAEG--P-KEVKARDFLPVADVEIM---NPDLHIATLEEGG 87 (123)
T ss_dssp TTBS-SC-HHHHHHHHHHCCEEESS-TTCSEEEEEEEECS--S-BCCBGGGSCCCTTEEES---CTTCBCCCBCTTC
T ss_pred CChh-hh-HHHHHHhhhhhheeecc-cccccEEEEEEecC--C-CeEEeeeecCCCcEEEE---CCcEEEEEEcCCc
Confidence 4665 22 44433 3566666543 2334 44455443 2 25899999999999987 7999999997543
No 7
>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=50.64 E-value=4.3 Score=28.92 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=16.4
Q ss_pred eEEEeccCCCCCCeEEEe
Q psy8562 142 FIEINLEKMEVNTSIHLS 159 (205)
Q Consensus 142 ~I~vDvs~L~iGd~i~v~ 159 (205)
.++||+|+|+.|+.++|.
T Consensus 7 ~veVDis~l~pG~~~~V~ 24 (129)
T d3cx5e1 7 KVEVNLAAIPLGKNVVVK 24 (129)
T ss_dssp CEEEEGGGCCTTCEEEEE
T ss_pred ceEEehhhCCCCCeEEEE
Confidence 589999999999999985
No 8
>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=47.15 E-value=5 Score=28.54 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=16.1
Q ss_pred eEEEeccCCCCCCeEEEe
Q psy8562 142 FIEINLEKMEVNTSIHLS 159 (205)
Q Consensus 142 ~I~vDvs~L~iGd~i~v~ 159 (205)
.++||+|.|+.|+.++|.
T Consensus 4 ~veVDlS~lepG~~~~V~ 21 (127)
T d1riea_ 4 KIEIKLSDIPEGKNMAFK 21 (127)
T ss_dssp SEEEEGGGSCTTCEEEEE
T ss_pred CEEEehhhCCCCCEEEEE
Confidence 589999999999999883
No 9
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}
Probab=37.63 E-value=3.4 Score=30.52 Aligned_cols=26 Identities=19% Similarity=0.492 Sum_probs=19.2
Q ss_pred EEEEeEeecccCCceeEEEEEEeCCCCe
Q psy8562 71 VLLRNFQLHAYKKLVLHADFQRVDTEKK 98 (205)
Q Consensus 71 vlikevQ~~pv~~~i~HvDF~~v~~~~~ 98 (205)
.++++++. -...+.|+||||++..+.
T Consensus 69 ~l~~~Y~~--~~~~i~H~DlYRl~~~~E 94 (158)
T d1htwa_ 69 TLVEEYNI--AGKMIYHFDLYRLADPEE 94 (158)
T ss_dssp TCEEEEEE--TTEEEEEEECTTCSCTTH
T ss_pred EEEEeecc--CCceEEEEEEeccCChhh
Confidence 56777653 345799999999987654
No 10
>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.14 E-value=42 Score=22.21 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=18.1
Q ss_pred CCCCCCeEEEeccCCCCCeEE
Q psy8562 149 KMEVNTSIHLSDIKLPRGVSV 169 (205)
Q Consensus 149 ~L~iGd~i~v~Dl~lp~gv~~ 169 (205)
++.-|+.|+|.|..+|-.+.+
T Consensus 68 gl~dG~ei~VtD~t~p~~~~~ 88 (92)
T d1y8xb1 68 GLVDGQELAVADVTTPQTVLF 88 (92)
T ss_dssp TCCTTCEEEEECTTCSSCEEE
T ss_pred CCcCCCEEEEecCCCcccEEE
Confidence 468899999999999988764
Done!