BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8564
(341 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q89A45|MUTY_BUCBP A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=mutY PE=3 SV=1
Length = 351
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 149/343 (43%), Positives = 210/343 (61%), Gaps = 25/343 (7%)
Query: 1 MLPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGL 60
LPWQ KN Y W+SEIMLQQTQV TVIPYY +F+K+FPNI +L+ + L++++ LWSGL
Sbjct: 21 TLPWQIKKNPYKTWISEIMLQQTQVKTVIPYYCKFIKRFPNIDTLSDSPLDSILNLWSGL 80
Query: 61 GYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGN 120
GYY+RARN++ AK++ K+NGIFP ++ +I LPGIG+STA AI F + + ILDGN
Sbjct: 81 GYYTRARNIYKTAKILKQKFNGIFPNSYAEIIKLPGIGKSTAGAILSFGFNLYSCILDGN 140
Query: 121 VKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCK 180
+KR+LIR IN +N K+IEK LW+ + P + + Q L+D G++IC K PKC
Sbjct: 141 IKRVLIRYYSIN--INNKYIEKLLWKTIESITPIYHTNKFNQALIDIGALICLKSNPKCN 198
Query: 181 VCPLQLCCISYKTNKINNFLI---KNKKNIKNCSIIMFIVID-DDYVLFQKRSNKGIWGG 236
+CPL+ C SY NK+ F I KNKK+I + F+++ +Y+ +KR N GIW
Sbjct: 199 ICPLKSTCKSYLNNKL--FQINCKKNKKHIIPKTKYWFLILQYKNYIFLEKRQNLGIWKK 256
Query: 237 LLSFPEWILKDKIINFVD-NNLKNLIELEIKKFISSFGFIKNYLILPIISHKLTHLQFKI 295
L FP++I ++ I++++ NN K IK IL HKL+HL I
Sbjct: 257 LFCFPQFIRQNDILSWIQKNNTK----------------IKKINILNEFKHKLSHLTLYI 300
Query: 296 VPCHIFLKKCFLKENKNNFIWYPIKKIKNSPIPAPVRKILFQI 338
P I + K + N N IWY + + +P PV KI+ +I
Sbjct: 301 NPIWIIINKISIFSNNNKTIWYNLNNPQCIGLPTPVTKIITKI 343
>sp|P17802|MUTY_ECOLI A/G-specific adenine glycosylase OS=Escherichia coli (strain K12)
GN=mutY PE=1 SV=1
Length = 350
Score = 248 bits (632), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 128/338 (37%), Positives = 188/338 (55%), Gaps = 16/338 (4%)
Query: 2 LPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLG 61
LPWQ K Y +WLSE+MLQQTQV TVIPY++RF+ +FP + LA A L+ V+ LW+GLG
Sbjct: 22 LPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLG 81
Query: 62 YYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNV 121
YY+RARNLH A+ V + G FP+ F + LPG+G+STA AI + GK ILDGNV
Sbjct: 82 YYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNV 141
Query: 122 KRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKV 181
KR+L R ++ K +E KLW + + P +E + Q +MD G++IC + KPKC +
Sbjct: 142 KRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSL 201
Query: 182 CPLQLCCISYKTNKINNFLIKNKKNIKNCSIIMFIVID-DDYVLFQKRSNKGIWGGLLSF 240
CPLQ CI+ N + K K F+++ +D VL +R G+WGGL F
Sbjct: 202 CPLQNGCIAAANNSWALYPGKKPKQTLPERTGYFLLLQHEDEVLLAQRPPSGLWGGLYCF 261
Query: 241 PEWILKDKIINFVDNNLKNLIELEIKKFISSFGFIKNYLILPIISHKLTHLQFKIVPCHI 300
P+ F D ++L + ++ I++ N L H +H IVP +
Sbjct: 262 PQ---------FADE--ESLRQWLAQRQIAA----DNLTQLTAFRHTFSHFHLDIVPMWL 306
Query: 301 FLKKCFLKENKNNFIWYPIKKIKNSPIPAPVRKILFQI 338
+ ++ N +WY + + + + APV ++L Q+
Sbjct: 307 PVSSFTGCMDEGNALWYNLAQPPSVGLAAPVERLLQQL 344
>sp|Q05869|MUTY_SALTY A/G-specific adenine glycosylase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=mutY PE=3 SV=1
Length = 350
Score = 247 bits (630), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 122/341 (35%), Positives = 186/341 (54%), Gaps = 22/341 (6%)
Query: 2 LPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLG 61
LPWQ K Y +WLSE+MLQQTQV TVIPY++RF+ +FP + LA A L+ V+ LW+GLG
Sbjct: 22 LPWQINKTPYKVWLSEVMLQQTQVTTVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLG 81
Query: 62 YYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNV 121
YY+RARNLH A+ V + G FP+ F + LPG+G+STA AI A GK ILDGNV
Sbjct: 82 YYARARNLHKAAQQVATLHGGEFPQTFAEIAALPGVGRSTAGAILSLALGKHYPILDGNV 141
Query: 122 KRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKV 181
KR+L R ++ K +E LW + + P + +E + Q +MD G+++C + KPKC +
Sbjct: 142 KRVLARCYAVSGWPGKKEVENTLWTLSEQVTPARGVERFNQAMMDLGAMVCTRSKPKCTL 201
Query: 182 CPLQLCCISYKTNKINNFLIKNKKNIKNCSIIMFIVIDDDYVLF-QKRSNKGIWGGLLSF 240
CPLQ CI+ + + K K F+++ + +F +R G+WGGL F
Sbjct: 202 CPLQNGCIAAAHESWSRYPGKKPKQTLPERTGYFLLLQHNQEIFLAQRPPSGLWGGLYCF 261
Query: 241 PEWILKDKIINFVDN---NLKNLIELEIKKFISSFGFIKNYLILPIISHKLTHLQFKIVP 297
P++ +D++ ++ N NL +L H +H IVP
Sbjct: 262 PQFAREDELREWLAQRHVNADNLTQLN------------------AFRHTFSHFHLDIVP 303
Query: 298 CHIFLKKCFLKENKNNFIWYPIKKIKNSPIPAPVRKILFQI 338
+ + ++ + +WY + + + + APV ++L Q+
Sbjct: 304 MWLPVSSLDACMDEGSALWYNLAQPPSVGLAAPVERLLQQL 344
>sp|P44320|MUTY_HAEIN A/G-specific adenine glycosylase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mutY PE=3 SV=1
Length = 378
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 170/312 (54%), Gaps = 18/312 (5%)
Query: 2 LPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLG 61
LPWQ K Y +WLSE+MLQQTQV TVIPY++RF+K FPNI +LA A + V+ LW+GLG
Sbjct: 27 LPWQQNKTLYGVWLSEVMLQQTQVATVIPYFERFIKTFPNITALANASQDEVLHLWTGLG 86
Query: 62 YYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNV 121
YY+RARNLH A+ V ++NG FP NF + L G+G+STA AI + ILDGNV
Sbjct: 87 YYARARNLHKAAQKVRDEFNGNFPTNFEQVWALSGVGRSTAGAILSSVLNQPYPILDGNV 146
Query: 122 KRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKV 181
KR+L R + K +E +LW + P + + Q +MD G+++C + KPKC +
Sbjct: 147 KRVLARYFAVEGWSGEKKVENRLWALTEQVTPTTRVADFNQAMMDIGAMVCMRTKPKCDL 206
Query: 182 CPLQLCCISYK-TNKINNFLIKNKKNIKNCSIIMFIVIDDDYVLFQKRSNKGIWGGLLSF 240
CPL + C++YK TN K KK + + I+ + V ++R N G+WGGL F
Sbjct: 207 CPLNIDCLAYKNTNWEKFPAKKPKKAMPEKTTYFLILSKNGKVCLEQRENSGLWGGLFCF 266
Query: 241 PEWILKDKIINFVDNNLKNLIELEIKKFISSFGFIKNYLILPIISHKLTHLQFKIVPCHI 300
P++ K +++F+ + +Y P H +H I P +
Sbjct: 267 PQFEDKSSLLHFLAQEK-----------------VTHYQEWPSFRHTFSHFHLDIHPIYA 309
Query: 301 FLKKCFLKENKN 312
++ E N
Sbjct: 310 EMESTLCVEQAN 321
>sp|P57617|MUTY_BUCAI A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=mutY PE=3 SV=1
Length = 350
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/337 (41%), Positives = 193/337 (57%), Gaps = 19/337 (5%)
Query: 2 LPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLG 61
LPWQ K Y +W+SEIMLQQT V + IPY+++F+ FPNI SL +KL++V+ LWSGLG
Sbjct: 22 LPWQINKTLYTVWISEIMLQQTTVKSAIPYFKKFILNFPNIKSLNDSKLDDVLYLWSGLG 81
Query: 62 YYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNV 121
YY+RA+N++ A+++ KY GIFP F ++I LPGIG+STA AI + ILDGNV
Sbjct: 82 YYNRAKNIYKSAQIIKKKYKGIFPDQFSNIIQLPGIGRSTAGAILSLSLNFFYPILDGNV 141
Query: 122 KRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKV 181
KRIL+R GI+ L K IEKKLW + P N + QG+MD G+ IC IKPKC +
Sbjct: 142 KRILVRYYGISGLLKDKKIEKKLWNIIESITPIHNTGKFNQGMMDIGASICISIKPKCTI 201
Query: 182 CPLQLCCISYKTNKINNFLIKNKKNIKNCSIIMFIVI-DDDYVLFQKRSNKGIWGGLLSF 240
CPL+ CI+ K + +KN K I FI+I ++ +K + + IW L F
Sbjct: 202 CPLKKECIAQIEKKWEKYPLKNIKKTLPQKISWFIIIKHENNFWLKKNTEQEIWKELFCF 261
Query: 241 PEWILKDKIINFVDNNLKNLIELEIKKFISSFGFIKNYLILPIISHKLTHLQFKIVPCHI 300
P++ K++ + ++ N+ E IS F HK +H I P I
Sbjct: 262 PKFKNKEEALIWLKEKKININTCE--NMISFF-------------HKFSHFILHINPILI 306
Query: 301 FLK--KCFLKENKNNFIWYPIKKIKNSPIPAPVRKIL 335
L F KEN IWY +K ++ +P PV+KIL
Sbjct: 307 RLPYISEFFKENHKK-IWYNLKNPQHIGLPRPVQKIL 342
>sp|Q8K926|MUTY_BUCAP A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=mutY PE=3 SV=1
Length = 347
Score = 208 bits (529), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 138/339 (40%), Positives = 189/339 (55%), Gaps = 22/339 (6%)
Query: 2 LPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLG 61
LPW+ K Y +W+SEIMLQQT V T IPY++ F+ +FPNI SL Q+KL++++ LWSGLG
Sbjct: 22 LPWKKDKTLYKVWISEIMLQQTTVKTAIPYFKNFISRFPNIQSLNQSKLDDILCLWSGLG 81
Query: 62 YYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNV 121
YY RA N++ K++ ++ FP F LI LPGIG+STA AI + IL+GNV
Sbjct: 82 YYKRAENIYKTVKIIKEEFQEKFPTGFSDLIKLPGIGRSTAGAILSLSLDYFFPILEGNV 141
Query: 122 KRILIRVLGINCSLNIKFIEKKLWRYAIDLL-PKKNIEIYTQGLMDFGSIICKKIKPKCK 180
KRIL+R GI + K IE+KLW Y I+L+ P N + QG+MD G++IC PKC
Sbjct: 142 KRILMRYYGIIGYVTEKKIEQKLW-YLIELITPIHNTGSFNQGIMDIGALICTPKNPKCN 200
Query: 181 VCPLQLCCISYKTNKINNFLIKNKKNIKNCSIIMFIVID-DDYVLFQKRSNKGIWGGLLS 239
+CPL CI+YK + +K KK I F+VI + +K + K IW L
Sbjct: 201 LCPLIQKCIAYKEKNWIKYPLKKKKKIILEKKSWFVVIKYQNQFWIEKNTEKKIWKNLFC 260
Query: 240 FPEWILKDKIINFVDNNLKNLIELEIKKFISSFGFIKNYLILPIISHKLTHLQFKIVPCH 299
FP + K K I ++ N N+ + K I SF HK +H I+P
Sbjct: 261 FPNFDTKIKTIEWLKKNKINIDKKHKK--IQSF------------YHKFSHFTLHIIP-- 304
Query: 300 IFLKKCFLK---ENKNNFIWYPIKKIKNSPIPAPVRKIL 335
I + F K +K IWY +K + +P PV+KIL
Sbjct: 305 ILVNLSFFKNFQNSKKTGIWYDLKNTHDIGLPKPVQKIL 343
>sp|O31584|YFHQ_BACSU Probable A/G-specific adenine glycosylase YfhQ OS=Bacillus subtilis
(strain 168) GN=yfhQ PE=2 SV=1
Length = 369
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 160/305 (52%), Gaps = 25/305 (8%)
Query: 1 MLPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGL 60
+LPW+ ++ Y +W+SE+MLQQT+V TVIPY+ RF+++FP + +LA A E V++ W GL
Sbjct: 30 VLPWREDQDPYKVWVSEVMLQQTRVETVIPYFLRFVEQFPTVEALADADEEKVLKAWEGL 89
Query: 61 GYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGN 120
GYYSR RNL K V +Y GI P + L G+G T A+ AY K +DGN
Sbjct: 90 GYYSRVRNLQSAVKEVKQEYGGIVPPDEKDFGGLKGVGPYTKGAVLSIAYNKPIPAVDGN 149
Query: 121 VKRILIRVLGINCSLNIKFIEKKLWRYAI-DLLPKKNIEIYTQGLMDFGSIICKKIKPKC 179
V R++ R+L I + K + ++ AI + K+ + QGLM+ G++IC P C
Sbjct: 150 VMRVMSRILSIWDDI-AKPKTRTIFEDAIRAFISKEKPSEFNQGLMELGALICTPKSPSC 208
Query: 180 KVCPLQLCCISYKTNKINNFLIKNKKNIKNCSIIMFIVI--DDDYVLFQKRSNKGIWGGL 237
+CP+Q C +++ +K+KK + IV+ +D V KR +KG+ L
Sbjct: 209 LLCPVQQHCSAFEEGTERELPVKSKKKKPGIKTMAAIVLTDEDGQVYIHKRPSKGLLANL 268
Query: 238 LSFPEW-------ILKDKIINFVDNNLKNLIELEIKKFISSFGFIKNYLILPIISHKLTH 290
FP ++++I F++N E I+ IS + ++ H TH
Sbjct: 269 WEFPNLETQKGIKTEREQLIAFLEN------EYGIQADISD--------LQGVVEHVFTH 314
Query: 291 LQFKI 295
L + I
Sbjct: 315 LVWNI 319
>sp|Q99P21|MUTYH_MOUSE A/G-specific adenine DNA glycosylase OS=Mus musculus GN=Mutyh PE=2
SV=2
Length = 515
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 10/221 (4%)
Query: 2 LPWQN--------TKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENV 53
LPW+N + Y +W+SE+MLQQTQV TVI YY R+++K+P + LA A LE V
Sbjct: 82 LPWRNLAKEEANSDRRAYAVWVSEVMLQQTQVATVIDYYTRWMQKWPKLQDLASASLEEV 141
Query: 54 MELWSGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLIN-LPGIGQSTASAIRVFAYGK 112
+LWSGLGYYSR R L A+ V + G P+ +L LPG+G+ TA AI A+ +
Sbjct: 142 NQLWSGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFDQ 201
Query: 113 RNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIIC 172
++DGNV R+L RV I + LW A L+ + Q M+ G+ +C
Sbjct: 202 VTGVVDGNVLRVLCRVRAIGADPTSTLVSHHLWNLAQQLVDPARPGDFNQAAMELGATVC 261
Query: 173 KKIKPKCKVCPLQLCCISYKTNKINNF-LIKNKKNIKNCSI 212
+P C CP+Q C +Y+ + + + +I+ C++
Sbjct: 262 TPQRPLCSHCPVQSLCRAYQRVQRGQLSALPGRPDIEECAL 302
>sp|Q8R5G2|MUTYH_RAT A/G-specific adenine DNA glycosylase OS=Rattus norvegicus GN=Mutyh
PE=2 SV=1
Length = 516
Score = 162 bits (410), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 118/221 (53%), Gaps = 10/221 (4%)
Query: 2 LPWQN--------TKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENV 53
LPW+ + Y +W+SE+MLQQTQV TVI YY R+++K+P + LA A LE V
Sbjct: 82 LPWRKRVKEETNLDRRAYAVWVSEVMLQQTQVATVIDYYTRWMQKWPTLQDLASASLEEV 141
Query: 54 MELWSGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLIN-LPGIGQSTASAIRVFAYGK 112
+LWSGLGYYSR R L A+ V + G P+ +L LPG+G+ TA AI A+ +
Sbjct: 142 NQLWSGLGYYSRGRRLQEGARKVVEELGGHVPRTAETLQQLLPGVGRYTAGAIASIAFDQ 201
Query: 113 RNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIIC 172
++DGNV R+L RV I F+ LW A L+ + Q M+ G+ +C
Sbjct: 202 VTGVVDGNVIRVLCRVRAIGADPTSSFVSHHLWDLAQQLVDPARPGDFNQAAMELGATVC 261
Query: 173 KKIKPKCKVCPLQ-LCCISYKTNKINNFLIKNKKNIKNCSI 212
+P C CP+Q LC + + + +I+ C++
Sbjct: 262 TPQRPLCNHCPVQSLCRAHQRVGQGRLSALPGSPDIEECAL 302
>sp|Q9UIF7|MUTYH_HUMAN A/G-specific adenine DNA glycosylase OS=Homo sapiens GN=MUTYH PE=1
SV=1
Length = 546
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 13/223 (5%)
Query: 2 LPWQN--------TKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENV 53
LPW+ + Y +W+SE+MLQQTQV TVI YY +++K+P + LA A LE V
Sbjct: 108 LPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEV 167
Query: 54 MELWSGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLIN-LPGIGQSTASAIRVFAYGK 112
+LW+GLGYYSR R L A+ V + G P+ +L LPG+G+ TA AI A+G+
Sbjct: 168 NQLWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQ 227
Query: 113 RNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIIC 172
++DGNV R+L RV I + + ++LW A L+ + Q M+ G+ +C
Sbjct: 228 ATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVC 287
Query: 173 KKIKPKCKVCPLQLCCISYKTNKINNFL----IKNKKNIKNCS 211
+P C CP++ C + + + L + +++ C+
Sbjct: 288 TPQRPLCSQCPVESLCRARQRVEQEQLLASGSLSGSPDVEECA 330
>sp|F4JRF4|MUTYH_ARATH A/G-specific adenine DNA glycosylase OS=Arabidopsis thaliana GN=MYH
PE=3 SV=1
Length = 630
Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 151/309 (48%), Gaps = 44/309 (14%)
Query: 2 LPWQNTKN-------TYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLEN-- 52
LPW+N ++ Y +W+SEIMLQQT+V TV+ YY+R+++K+P I L QA LEN
Sbjct: 146 LPWRNRRSESEKERRAYEVWVSEIMLQQTRVQTVMKYYKRWMQKWPTIYDLGQASLENLI 205
Query: 53 -----------------VMELWSGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLP 95
V E+W+GLGYY RAR L AK+V G FP SL+ +
Sbjct: 206 VSRSRELSFLRGNEKKEVNEMWAGLGYYRRARFLLEGAKMVVAGTEG-FPNQASSLMKVK 264
Query: 96 GIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKK 155
GIGQ TA AI A+ + ++DGNV R+L R+ I+ + + + W+ A L+
Sbjct: 265 GIGQYTAGAIASIAFNEAVPVVDGNVIRVLARLKAISANPKDRLTARNFWKLAAQLVDPS 324
Query: 156 NIEIYTQGLMDFGSIICKKIKPKCKVCPLQLCCISYKTNKINNFL---------IKNKKN 206
+ Q LM+ G+ +C KP C CP+ C ++ ++ N + IK K
Sbjct: 325 RPGDFNQSLMELGATLCTVSKPSCSSCPVSSQCRAFSLSEENRTISVTDYPTKVIKAKPR 384
Query: 207 IKNCSIIMFIVID-------DDYVLFQKRSNKGIWGGLLSFPEWILKDKIINFVDNNLKN 259
C + + + + +VL KR +G+ GL FP IL ++ + N N
Sbjct: 385 HDFCCVCVLEIHNLERNQSGGRFVLV-KRPEQGLLAGLWEFPSVILNEEADSATRRNAIN 443
Query: 260 LIELEIKKF 268
+ E +F
Sbjct: 444 VYLKEAFRF 452
>sp|Q10159|MYH1_SCHPO A/G-specific adenine DNA glycosylase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=myh1 PE=1 SV=1
Length = 461
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 156/358 (43%), Gaps = 62/358 (17%)
Query: 5 QNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKL-ENVMELWSGLGYY 63
Q + Y + +SEIMLQQT+V TV YY ++++ P + S A+A+ VM LWSG+G+Y
Sbjct: 57 QPVQRLYEVLVSEIMLQQTRVETVKRYYTKWMETLPTLKSCAEAEYNTQVMPLWSGMGFY 116
Query: 64 SRARNLH-ICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVK 122
+R + LH C L + I +PG+G TA A+ A+ + I+DGNV
Sbjct: 117 TRCKRLHQACQHLAKLHPSEIPRTGDEWAKGIPGVGPYTAGAVLSIAWKQPTGIVDGNVI 176
Query: 123 RILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVC 182
R+L R L I+ + +W+ A +L+ + Q LM+ G+I C P+C VC
Sbjct: 177 RVLSRALAIHSDCSKGKANALIWKLANELVDPVRPGDFNQALMELGAITCTPQSPRCSVC 236
Query: 183 PLQLCCISYKTNKI-----------------------------NNFLI--------KNKK 205
P+ C +Y+ + N+++ K K+
Sbjct: 237 PISEICKAYQEQNVIRDGNTIKYDIEDVPCNICITDIPSKEDLQNWVVARYPVHPAKTKQ 296
Query: 206 NIKNCSIIMFIVID----DDYVLFQKRSNKGIWGGLLSFPEWILKDKIINFVDNNLKNLI 261
+ +++F D + + L +KR + G+ GL FP I F + +
Sbjct: 297 REERALVVIFQKTDPSTKEKFFLIRKRPSAGLLAGLWDFP-------TIEFGQESWPKDM 349
Query: 262 ELEIKKFIS------SFGFIKNY----LILPIISH--KLTHLQFKIVPCHIFLKKCFL 307
+ E +K I+ S IK Y L I SH K +H+ + I I + F
Sbjct: 350 DAEFQKSIAQWISNDSRSLIKKYQSRGRYLHIFSHIRKTSHVFYAIASPDIVTNEDFF 407
>sp|A0R567|MUTY_MYCS2 A/G-specific adenine glycosylase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=mutY PE=3 SV=1
Length = 293
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 102/187 (54%), Gaps = 3/187 (1%)
Query: 2 LPWQNTK-NTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGL 60
LPW+ + + I +SE MLQQT V+ V P + +++++P + A A V+ W L
Sbjct: 19 LPWRRPGVSAWQILVSEFMLQQTPVSRVEPIWSAWIERWPTASATAAAGPAEVLRAWGKL 78
Query: 61 GYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGN 120
GY RA+ LH CA ++ +Y+ + P++ +L+ LPGIG TA A+ FAY ++D N
Sbjct: 79 GYPRRAKRLHECAVVIASEYDDVVPRDVDTLLTLPGIGAYTARAVACFAYQASVPVVDTN 138
Query: 121 VKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCK 180
V+R++ R ++ + + + L A L P ++ LM+ G+ +C P+C
Sbjct: 139 VRRVVTR--AVHGAADAPASTRDLDMVAALLPPDTTAPTFSAALMELGATVCTARSPRCG 196
Query: 181 VCPLQLC 187
+CPL C
Sbjct: 197 ICPLSHC 203
>sp|P29588|GTMR_METTF G/T mismatches repair enzyme OS=Methanobacterium thermoformicicum
PE=1 SV=1
Length = 221
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 110/195 (56%), Gaps = 8/195 (4%)
Query: 2 LPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKK---FPNIMSLAQAKL-ENVMELW 57
PW++T++ Y I ++EI+L++T V Y +F K F +I+ ++++ +++ E+
Sbjct: 27 FPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEI- 85
Query: 58 SGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAIL 117
GL RA L A++V Y G P+N ++++LPG+G+ T +A+ A+GK+ A++
Sbjct: 86 -GLSN-QRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMV 143
Query: 118 DGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKP 177
D N R++ R G + N+ + K LW A L+P + GLMDF +IIC KP
Sbjct: 144 DANFVRVINRYFGGSYE-NLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKP 202
Query: 178 KCKVCPLQLCCISYK 192
KC+ C + C Y+
Sbjct: 203 KCEKCGMSKLCSYYE 217
>sp|P46230|MUTY_AERHY A/G-specific adenine glycosylase (Fragment) OS=Aeromonas
hydrophila GN=mutY PE=3 SV=1
Length = 99
Score = 114 bits (284), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 60/75 (80%)
Query: 2 LPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLG 61
LPWQ K Y +W+SEIMLQQTQV TVIPYYQRF+ +FP++ +LAQA ++ V+ W+GLG
Sbjct: 25 LPWQQDKTPYRVWVSEIMLQQTQVATVIPYYQRFMARFPDVQALAQAPIDEVLHHWTGLG 84
Query: 62 YYSRARNLHICAKLV 76
YY+RARNLH A+ +
Sbjct: 85 YYARARNLHKAAQQI 99
>sp|P39788|END3_BACSU Probable endonuclease III OS=Bacillus subtilis (strain 168) GN=nth
PE=3 SV=1
Length = 219
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Query: 50 LENVMELWSGLG-YYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVF 108
LE + + +G Y ++A+N+ +K++ Y G P++ L+ LPG+G+ TA+ +
Sbjct: 70 LEELQQDIKSIGLYRNKAKNIQKLSKMIIEDYGGEVPRDRDELVKLPGVGRKTANVVVSV 129
Query: 109 AYGKRNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFG 168
A+G +D +V+R+ R+ ++ +EK L R +PK++ + L+ FG
Sbjct: 130 AFGVPAIAVDTHVERVSKRLGICRWKDSVLEVEKTLMRK----VPKEDWSVTHHRLIFFG 185
Query: 169 SIICKKIKPKCKVCP-LQLCCISYKTNK 195
CK P+C CP L LC K +K
Sbjct: 186 RYHCKAQSPRCAECPLLSLCREGQKRDK 213
>sp|P73715|END3_SYNY3 Endonuclease III OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=nth PE=3 SV=1
Length = 219
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 89/173 (51%), Gaps = 10/173 (5%)
Query: 24 QVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYY-SRARNLHICAKLVFFKYNG 82
+VN V P +++P+ +LA + + EL G++ ++A+N+ + + +++G
Sbjct: 55 RVNKVTPA---LFQRYPDANALAYGDRQEIEELIHSTGFFRNKAKNIQGACRKIVEEFDG 111
Query: 83 IFPKNFISLINLPGIGQSTASAIRVFAYGKRNAI-LDGNVKRILIRVLGINCSLNIKFIE 141
P+ L+ LPG+ + TA+ + A+G + +D +VKR+ R LG+ + + IE
Sbjct: 112 EVPQRMEELLTLPGVARKTANVVLAHAFGILAGVTVDTHVKRLSQR-LGLTKATDPIRIE 170
Query: 142 KKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVCPLQLCCISYKTN 194
+ L + L+P+ + E ++ ++ G +C KP C C L C S + +
Sbjct: 171 RDLMK----LIPQPDWENFSIHIIYHGRAVCAARKPLCGECQLAHLCPSAQAS 219
>sp|P46303|UVEN_MICLC Ultraviolet N-glycosylase/AP lyase OS=Micrococcus luteus (strain
ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB
9278 / NCTC 2665 / VKM Ac-2230) GN=pdg PE=1 SV=2
Length = 279
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 19/198 (9%)
Query: 8 KNTYYIWLSEIMLQQT---QVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYYS 64
+ + + ++ ++ QT +VN P +FP+ ++A A + EL G+Y
Sbjct: 42 ETPFELLVATVLSAQTTDVRVNAATPA---LFARFPDAHAMAAATEPELQELVRSTGFY- 97
Query: 65 RARN-----LHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDG 119
RN L + +LV +++G P L+ LPG+G+ TA + A+G+ +D
Sbjct: 98 --RNKASAILRLSQELVG-RHDGEVPARLEDLVALPGVGRKTAFVVLGNAFGQPGITVDT 154
Query: 120 NVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKC 179
+ R L R LG + K R + P ++ + + L+ G +C +P C
Sbjct: 155 HFGR-LARRLGFTDETDPG---KGRARRGRPVPPARDWTMLSHRLIFHGRRVCHARRPAC 210
Query: 180 KVCPLQLCCISYKTNKIN 197
CP+ C SY + +
Sbjct: 211 GRCPIARWCPSYAAGETD 228
>sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=nth PE=3 SV=1
Length = 213
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 8/191 (4%)
Query: 5 QNTKNT--YYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLG- 61
+N K T + + +S ++ Q+T+ ++ + + LA+AK E++ +L G
Sbjct: 15 RNHKETDPFRVLISTVLSQRTRDENTEKASKKLFEVYRTPQELAKAKPEDLYDLIKESGM 74
Query: 62 YYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNV 121
Y +A + ++++ KY G P + L+ LPG+G+ TA+ + + K +D +V
Sbjct: 75 YRQKAERIVEISRILVEKYGGRVPDSLEELLKLPGVGRKTANIVLWVGFKKPALAVDTHV 134
Query: 122 KRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKV 181
RI R LG + + E+ L + LLP+ +++FG ICK P C+
Sbjct: 135 HRISNR-LGWVKTRTPEETEEALKK----LLPEDLWGPINGSMVEFGRRICKPQNPLCEE 189
Query: 182 CPLQLCCISYK 192
C L+ C Y+
Sbjct: 190 CFLKNHCEFYR 200
>sp|Q4UK93|END3_RICFE Endonuclease III OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=nth PE=3 SV=1
Length = 213
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 51 ENVMELW-SGLGYY--------SRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQST 101
E ++EL GL Y S+A+N+ K++ Y P +F LI LPG+G+ T
Sbjct: 62 EKILELGEDGLKKYIKSIGLFNSKAKNIIALCKILISNYQSSVPNDFKELIKLPGVGRKT 121
Query: 102 ASAIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYT 161
A+ + +G +D +V R+ R+ G+ + + +EK+L + ++ +K +
Sbjct: 122 ANVVLNCLFGMPTMAVDTHVFRVAKRI-GLARGNSPEIVEKEL----LQIINEKWLTHAH 176
Query: 162 QGLMDFGSIICKKIKPKCKVCPLQLCCISYKT 193
L+ G ICK KP C +CP++ C Y +
Sbjct: 177 HWLILHGRYICKARKPDCDICPIKEYCEYYNS 208
>sp|Q92GH4|END3_RICCN Endonuclease III OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=nth PE=3 SV=1
Length = 210
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 6/185 (3%)
Query: 8 KNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYY-SRA 66
KN + + ++ I+ Q +V + + + + E + + +G + S+A
Sbjct: 27 KNDFTLLVAVILSAQATDISVNLATKSLFATYDTPEKILELGEEGLKKYIKSIGLFNSKA 86
Query: 67 RNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILI 126
+N+ K++ Y P +F +LI LPG+G+ TA+ + +G +D +V R+
Sbjct: 87 KNIIALCKILISNYQASVPNDFKALIKLPGVGRKTANVVLNCLFGMPTMAVDTHVFRVAN 146
Query: 127 RVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVCPLQL 186
R+ G+ + +E +L + ++ K + L+ G ICK KP C +CP++
Sbjct: 147 RI-GLAKGDTPEIVENEL----LQIIDTKWLTHAHHWLILHGRYICKARKPDCDICPIKE 201
Query: 187 CCISY 191
C Y
Sbjct: 202 YCDYY 206
>sp|P54137|NTH1_CAEEL Probable endonuclease III homolog OS=Caenorhabditis elegans
GN=nth-1 PE=1 SV=2
Length = 298
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 90/200 (45%), Gaps = 7/200 (3%)
Query: 11 YYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYYSR-ARNL 69
+ + ++ ++ QT+ +R +I + + K+ ++ + +G+Y R A L
Sbjct: 68 FQVLVALMLSSQTRDEVNAAAMKRLKDHGLSIGKILEFKVPDLETILCPVGFYKRKAVYL 127
Query: 70 HICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAI-LDGNVKRILIRV 128
AK++ ++G P + L LPG+G A+ + A+G+ I +D +V RI R+
Sbjct: 128 QKTAKILKDDFSGDIPDSLDGLCALPGVGPKMANLVMQIAWGECVGIAVDTHVHRISNRL 187
Query: 129 LGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVCPLQLCC 188
I S +K + LLPK + L+ FG + C+ ++PKC C + C
Sbjct: 188 GWIKTS-----TPEKTQKALEILLPKSEWQPINHLLVGFGQMQCQPVRPKCGTCLCRFTC 242
Query: 189 ISYKTNKINNFLIKNKKNIK 208
S + + + +I+
Sbjct: 243 PSSTAKNVKSETEETSTSIE 262
>sp|O05956|END3_RICPR Endonuclease III OS=Rickettsia prowazekii (strain Madrid E) GN=nth
PE=3 SV=1
Length = 212
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 64 SRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKR 123
S+A+N+ +++ Y P NF L+ LPG+G+ TA+ + + +D +V R
Sbjct: 84 SKAKNIIALCQILIKNYQTSIPNNFKELVKLPGVGRKTANVVLNCLFAMPTMAVDTHVFR 143
Query: 124 ILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVCP 183
+ R+ G+ +EK+L + ++ +K + L+ G ICK KP C +CP
Sbjct: 144 VSKRI-GLAKGNTAAIVEKEL----LQIIDEKWLTYAHHWLILHGRYICKARKPGCNICP 198
Query: 184 LQLCCISYKTNKINNF 199
++ C Y IN F
Sbjct: 199 IKEYCEYY----INTF 210
>sp|Q68W04|END3_RICTY Endonuclease III OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=nth PE=3 SV=1
Length = 212
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 64 SRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKR 123
S+A+N+ +++ Y P +F L+ LPG+G+ TA+ + + +D +V R
Sbjct: 84 SKAKNIIASCQILIKNYQASIPNDFKELVKLPGVGRKTANVVLNCLFAMPTMAVDTHVFR 143
Query: 124 ILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVCP 183
+ R+ G+ +EK+L + ++ +K + L+ G ICK KP C++C
Sbjct: 144 VSKRI-GLAKGNTTVIVEKEL----LQIIDEKWLTHAHHWLVLHGRYICKARKPSCRICH 198
Query: 184 LQLCCISYKTNKINNF 199
++ C Y IN F
Sbjct: 199 IKEYCEYY----INTF 210
>sp|P57219|END3_BUCAI Endonuclease III OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=nth PE=3 SV=1
Length = 210
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
Query: 50 LENVMELWSGLGYY-SRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVF 108
LE + +G Y ++A N+ + ++ KYN I P N I L +LPG+G+ TA+ I
Sbjct: 69 LERLKNYIKDIGLYNTKALNIIRTSFIILTKYNSIVPNNRIELESLPGVGRKTANIILNI 128
Query: 109 AYGKRNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFG 168
+ K+ +D +V R+ R N+K +E+KL I ++P + + G
Sbjct: 129 LFKKKTIAVDTHVFRVCNRT-NFAKGKNVKIVEEKL----IKVVPSIFKLNFHSWFILHG 183
Query: 169 SIICKKIKPKCKVCPL-QLC 187
IC K KC +C + +LC
Sbjct: 184 RYICTARKIKCNICLIFKLC 203
>sp|Q89AW4|END3_BUCBP Endonuclease III OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=nth PE=3 SV=1
Length = 215
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 6/179 (3%)
Query: 11 YYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYYSR-ARNL 69
+ + +S ++ QT V QR L + E LG Y++ + N+
Sbjct: 35 FELLISVMLSAQTTDRMVNKTTQRLFGIANTPSGFISIGLHAIRENIRKLGLYNKKSSNI 94
Query: 70 HICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVL 129
+++ +Y G P N L +LPG+G+ TA+ I + K+ +D +V R+ R+
Sbjct: 95 LRTCEILLKRYGGKVPNNREDLESLPGVGRKTANVILNVIFKKKTIAVDTHVFRLCNRI- 153
Query: 130 GINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVCPLQLCC 188
G + +EKKL ++++P+K + + G IC PKC C + C
Sbjct: 154 GFAKGTTVLTVEKKL----LNIVPEKFKLNFHAWFIMHGRYICTSRVPKCSKCIISSLC 208
>sp|P63540|END3_MYCTU Endonuclease III OS=Mycobacterium tuberculosis GN=nth PE=3 SV=1
Length = 245
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 9/178 (5%)
Query: 24 QVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYY-SRARNLHICAKLVFFKYNG 82
+VN P ++ AQA + L G+Y ++A +L + + ++ G
Sbjct: 57 RVNLTTPA---LFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGG 113
Query: 83 IFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIEK 142
P L+ LPG+G+ TA+ I A+G +D + R++ R +K +E+
Sbjct: 114 EVPATMDKLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVK-VEQ 172
Query: 143 KLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVCPLQLCCISYKTNKINNFL 200
+ +L+ +K + + ++ G +C +P C VC L C S+ L
Sbjct: 173 AVG----ELIERKEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLL 226
>sp|P63541|END3_MYCBO Endonuclease III OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=nth PE=3 SV=1
Length = 245
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 9/178 (5%)
Query: 24 QVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYY-SRARNLHICAKLVFFKYNG 82
+VN P ++ AQA + L G+Y ++A +L + + ++ G
Sbjct: 57 RVNLTTPA---LFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGG 113
Query: 83 IFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIEK 142
P L+ LPG+G+ TA+ I A+G +D + R++ R +K +E+
Sbjct: 114 EVPATMDKLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVK-VEQ 172
Query: 143 KLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVCPLQLCCISYKTNKINNFL 200
+ +L+ +K + + ++ G +C +P C VC L C S+ L
Sbjct: 173 AVG----ELIERKEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLL 226
>sp|Q8SRB8|NTH1_ENCCU Endonuclease III homolog OS=Encephalitozoon cuniculi (strain GB-M1)
GN=NTH1 PE=1 SV=1
Length = 238
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 90/195 (46%), Gaps = 23/195 (11%)
Query: 11 YYIWLSEIMLQQTQVNTVIPYYQRFLKKFPN-------------IMSLAQAKLENVMELW 57
++I +S ++ QT+ R K P I +A + ++++ E
Sbjct: 49 FHILVSLLLSSQTKDEVTYEAMARLRKLLPESAATDGEARGGLTIERVANSDVKHINECI 108
Query: 58 SGLGYYSR-ARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAI 116
+G+++R A NL A+++ K P+ LI+LPGIG A A + I
Sbjct: 109 KKVGFHNRKAANLKKIAEILREKG---LPREMKDLISLPGIGNKMALLYMSHACNRTVGI 165
Query: 117 -LDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKI 175
+D +V RI R+ G+ + +++ ++L R ++P+K + L+ FG IC
Sbjct: 166 SVDTHVHRISNRI-GLVRTRDVESTRRELER----VVPRKEWKTINNILVGFGQTICVAK 220
Query: 176 KPKCKVCPLQLCCIS 190
+P+C+ C ++ C S
Sbjct: 221 RPRCEECCIRGRCPS 235
>sp|Q2KID2|NTHL1_BOVIN Endonuclease III-like protein 1 OS=Bos taurus GN=NTHL1 PE=2 SV=1
Length = 305
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 86/187 (45%), Gaps = 11/187 (5%)
Query: 11 YYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYY-SRARNL 69
Y + LS ++ QT+ QR + + S+ Q + L +G++ S+ + +
Sbjct: 123 YQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDSTLGALIYPVGFWRSKVKYI 182
Query: 70 HICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAI-LDGNVKRILIRV 128
+ ++ +Y+G P + L+ LPG+G A A+G + I +D +V RI R
Sbjct: 183 KQTSAILQQRYDGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR- 241
Query: 129 LGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQ--GLM-DFGSIICKKIKPKCKVCPLQ 185
+ + ++ R + LP+ E++++ GL+ FG C I+P+C+ C +
Sbjct: 242 --LRWTKKATKSPEETRRALEEWLPR---ELWSEINGLLVGFGQQTCLPIRPRCQACLNR 296
Query: 186 LCCISYK 192
C + +
Sbjct: 297 ALCPAAR 303
>sp|Q58030|Y613_METJA Putative endonuclease MJ0613 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0613 PE=3 SV=2
Length = 344
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 13/180 (7%)
Query: 7 TKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYYSRA 66
K+ + + +S I+ +T+ ++ K+ ++ L E + +L G+Y
Sbjct: 23 DKDPFKVLISTIISARTKDEVTEEVSKKLFKEIKDVDDLLNIDEEKLADLIYPAGFYKNK 82
Query: 67 RNLHICAKLVFFK-YNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRIL 125
+ + YNG P + L+ LPG+G+ TA+ + A+ K +D +V RI
Sbjct: 83 AKNLKKLAKILKENYNGKVPDSLEELLKLPGVGRKTANLVITLAFNKDGICVDTHVHRIC 142
Query: 126 IR---VLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVC 182
R V + KK LPKK ++ L+ FG IC K KC C
Sbjct: 143 NRWEIVDTETPEETEFELRKK--------LPKKYWKVINNLLVVFGREICSS-KSKCDKC 193
>sp|Q9CB92|END3_MYCLE Endonuclease III OS=Mycobacterium leprae (strain TN) GN=nth PE=3
SV=2
Length = 245
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 7/177 (3%)
Query: 24 QVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYYSRARNLHICAKLVFFKYNGI 83
+VN P + + M +A+LEN + +G + ++A +L + + +++G
Sbjct: 57 RVNLTTPAVFARYRSALDYMQADRAELENFIRP-TGF-FRNKAASLIRLGQALVERFDGE 114
Query: 84 FPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIEKK 143
P + L LPG+G+ TA+ I A+G +D + R++ R +K +E
Sbjct: 115 VPSTMVDLFTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTAEEDPVK-VEHA 173
Query: 144 LWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVCPLQLCCISYKTNKINNFL 200
+ +L+ + + + ++ G +C KP C VC L C S+ L
Sbjct: 174 VG----ELIERDQWTLLSHRVIFHGRRVCHARKPACGVCVLAKDCPSFGLGPTEPLL 226
>sp|P78549|NTHL1_HUMAN Endonuclease III-like protein 1 OS=Homo sapiens GN=NTHL1 PE=1 SV=2
Length = 312
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 7/185 (3%)
Query: 11 YYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYY-SRARNL 69
Y + LS ++ QT+ QR + + S+ Q + +L +G++ S+ + +
Sbjct: 130 YQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPVGFWRSKVKYI 189
Query: 70 HICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAI-LDGNVKRILIRV 128
+ ++ Y G P + L+ LPG+G A A+G + I +D +V RI R+
Sbjct: 190 KQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANRL 249
Query: 129 LGINCSLNIKFIEKKLWRYAIDL-LPKKNIEIYTQGLMDFGSIICKKIKPKCKVCPLQLC 187
+ K E+ R A++ LP++ L+ FG C + P+C C Q
Sbjct: 250 RWTKKA--TKSPEET--RAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHACLNQAL 305
Query: 188 CISYK 192
C + +
Sbjct: 306 CPAAQ 310
>sp|Q8KA16|END3_BUCAP Endonuclease III OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=nth PE=3 SV=1
Length = 209
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 62 YYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNV 121
Y +++ N+ A L+ KYN P N L +LPG+G+ TA+ I + K +D +V
Sbjct: 82 YNTKSLNIINSAYLIKTKYNNKVPSNRTELESLPGVGRKTANIILNVLFNKNTIAVDTHV 141
Query: 122 KRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKV 181
R+ R G N+ +EKK+ + + KK + + + G +C + KCK
Sbjct: 142 FRVANRT-GFAKGKNVIEVEKKMIKIVPSIF-KKYVHFW---FVLHGRYVCTARQLKCKT 196
Query: 182 CPLQLCC 188
C ++ C
Sbjct: 197 CFIEKLC 203
>sp|P0AB83|END3_ECOLI Endonuclease III OS=Escherichia coli (strain K12) GN=nth PE=1 SV=1
Length = 211
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 62 YYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNV 121
Y S+A N+ +++ ++NG P++ +L LPG+G+ TA+ + A+G +D ++
Sbjct: 82 YNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHI 141
Query: 122 KRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKV 181
R+ R N++ +E+KL + ++P + L+ G C KP+C
Sbjct: 142 FRVCNRT-QFAPGKNVEQVEEKLLK----VVPAEFKVDCHHWLILHGRYTCIARKPRCGS 196
Query: 182 CPLQLCC 188
C ++ C
Sbjct: 197 CIIEDLC 203
>sp|P0AB84|END3_ECOL6 Endonuclease III OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=nth PE=3 SV=1
Length = 211
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 62 YYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNV 121
Y S+A N+ +++ ++NG P++ +L LPG+G+ TA+ + A+G +D ++
Sbjct: 82 YNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHI 141
Query: 122 KRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKV 181
R+ R N++ +E+KL + ++P + L+ G C KP+C
Sbjct: 142 FRVCNRT-QFAPGKNVEQVEEKLLK----VVPAEFKVDCHHWLILHGRYTCIARKPRCGS 196
Query: 182 CPLQLCC 188
C ++ C
Sbjct: 197 CIIEDLC 203
>sp|O35980|NTHL1_MOUSE Endonuclease III-like protein 1 OS=Mus musculus GN=Nthl1 PE=2 SV=1
Length = 300
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 76/174 (43%), Gaps = 5/174 (2%)
Query: 11 YYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYY-SRARNL 69
Y + LS ++ QT+ QR + + S+ Q + + L +G++ ++ + +
Sbjct: 118 YQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVESILQTDDDTLGRLIYPVGFWRNKVKYI 177
Query: 70 HICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAI-LDGNVKRILIRV 128
++ +Y G P + L+ LPG+G A A+G + I +D +V RI R
Sbjct: 178 KQTTAILQQRYEGDIPASVAELVALPGVGPKMAHLAMAVAWGTISGIAVDTHVHRIANR- 236
Query: 129 LGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVC 182
+ + + ++ + + LP+ L+ FG IC + P+C+ C
Sbjct: 237 --LRWTKKMTKTPEETRKNLEEWLPRVLWSEVNGLLVGFGQQICLPVHPRCQAC 288
>sp|Q9SR66|DML2_ARATH DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2
Length = 1332
Score = 45.8 bits (107), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 15/119 (12%)
Query: 91 LINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINCS-----LNIKFIE---- 141
L+++ G+G + +R+ + + +D NV RI +R+ + L + +E
Sbjct: 876 LLSINGLGLKSVECVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPLPDELQMHLLELYPV 935
Query: 142 -----KKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVCPLQLCCISYKTNK 195
K LW L K E++ ++ FG + C K+KP C CP++ C Y + +
Sbjct: 936 LESVQKYLWPRLCKLDQKTLYELHYH-MITFGKVFCTKVKPNCNACPMKAECRHYSSAR 993
>sp|Q9SJQ6|ROS1_ARATH Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2
Length = 1393
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 91 LINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINC-----SLNIKFIE---- 141
L++ G+G + +R+ +D NV RI +R+ + SL + +E
Sbjct: 944 LLSFNGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPM 1003
Query: 142 -----KKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVCPLQLCC 188
K LW L K E++ Q ++ FG + C K KP C CP++ C
Sbjct: 1004 LESIQKYLWPRLCKLDQKTLYELHYQ-MITFGKVFCTKSKPNCNACPMKGEC 1054
>sp|P44319|END3_HAEIN Endonuclease III OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=nth PE=3 SV=1
Length = 211
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 62 YYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNV 121
+ S+A N+ + + K+NG P+N +L L G+G+ TA+ + A+G +D ++
Sbjct: 82 FNSKAENIIKTCRDLIEKHNGEVPENREALEALAGVGRKTANVVLNTAFGHPTIAVDTHI 141
Query: 122 KRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKK-NIEIYTQGLMDFGSIICKKIKPKCK 180
R+ R ++ +E+KL + ++P + ++++ L+ G C KP+C
Sbjct: 142 FRVCNRT-NFAAGKDVVKVEEKLLK----VVPNEFKVDVH-HWLILHGRYTCIARKPRCG 195
Query: 181 VCPLQLCC 188
C ++ C
Sbjct: 196 SCIIEDLC 203
>sp|O49498|DML3_ARATH DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2
Length = 1044
Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 91 LINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRV-------LGINCSLNIKF---- 139
L+ + GIG +A +R+ +D NV RI +R+ L ++ F
Sbjct: 584 LLEIEGIGLKSAECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPS 643
Query: 140 ---IEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVCPLQLCC 188
I+K LW L + E++ Q ++ FG + C K P C CP++ C
Sbjct: 644 MDSIQKYLWPRLCKLPQETLYELHYQ-MITFGKVFCTKTIPNCNACPMKSEC 694
>sp|O83754|END3_TREPA Endonuclease III OS=Treponema pallidum (strain Nichols) GN=nth PE=3
SV=1
Length = 211
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 62 YYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNV 121
Y ++AR + + + ++ P + +L +LPG+G TA+ + +G +D ++
Sbjct: 85 YPTKARRIIALSAELIERFAAQVPCDAHALESLPGVGHKTANVVLNMGFGIPTIAVDTHI 144
Query: 122 KRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKV 181
R R+ G++ + +E+ L + + P++ ++ G C +P+C
Sbjct: 145 LRTAPRI-GLSSGRTPRAVERDL----LVVTPREFRMHAHHWILLHGRYTCTARRPRCTE 199
Query: 182 CPLQ-LCC 188
C L+ LCC
Sbjct: 200 CCLRDLCC 207
>sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1
SV=2
Length = 1987
Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 91 LINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINC-----SLNIKFIE---- 141
L+++ G+G + +R+ +D NV RI +R+ + SL + +E
Sbjct: 1535 LLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLELYPV 1594
Query: 142 -----KKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKVCPLQLCC 188
K LW L + E++ Q L+ FG + C K +P C CP++ C
Sbjct: 1595 LESIQKFLWPRLCKLDQRTLYELHYQ-LITFGKVFCTKSRPNCNACPMRGEC 1645
>sp|Q58829|Y1434_METJA Putative endonuclease MJ1434 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1434 PE=3 SV=1
Length = 220
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 15/107 (14%)
Query: 90 SLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAI 149
L+++ G+G+ TA +I ++A + + ++D KR+ R+ IN EK +
Sbjct: 122 ELLSINGVGKETADSILLYALDRESFVVDAYTKRMFSRLGVIN--------EKAKYDEIK 173
Query: 150 DLLPK---KNIEIYTQG---LMDFGSIICKKIKPKCKVCPLQLCCIS 190
++ K K++EIY + +++ C+K K C CP++ C+S
Sbjct: 174 EIFEKNLPKDLEIYKEYHALIVEHCKKFCRK-KALCDNCPIKEFCLS 219
>sp|O08760|OGG1_MOUSE N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE=2 SV=2
Length = 345
Score = 36.2 bits (82), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 39 FPNIMSLAQAKLENVMELWSGLGYYSRARNLHICAKLVFFKYNGI----------FPKNF 88
FPN+ +LA + E + GLGY RAR + AK + + G + +
Sbjct: 181 FPNLHALAGPEAETHLRK-LGLGY--RARYVRASAKAILEEQGGPAWLQQLRVAPYEEAH 237
Query: 89 ISLINLPGIGQSTASAIRVFAYGKRNAI-LDGNVKRILIRVLG 130
+L LPG+G A I + A K A+ +D +V +I R G
Sbjct: 238 KALCTLPGVGAKVADCICLMALDKPQAVPVDVHVWQIAHRDYG 280
>sp|Q09907|NTH1_SCHPO Endonuclease III homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nth1 PE=1 SV=1
Length = 355
Score = 35.0 bits (79), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 30/195 (15%)
Query: 15 LSEIMLQQTQVNTVIPYYQRFLKK-------FPNIMSLAQAKLENVMELWSGLGYYSRAR 67
L +ML + V+ R LK+ +I ++ + L ++E +G+++R
Sbjct: 52 LVALMLSSQTKDIVLGPTMRNLKEKLAGGLCLEDIQNIDEVSLNKLIE---KVGFHNRKT 108
Query: 68 -NLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAI-LDGNVKRIL 125
L A+++ K+ G P L+ LPG+G A+ K I +D +V RI
Sbjct: 109 IYLKQMARILSEKFQGDIPDTVEDLMTLPGVGPKMGYLCMSIAWNKTVGIGVDVHVHRI- 167
Query: 126 IRVLGINCSL----NIKFIEKKLWRYAIDL-LPKKNIEIYTQGLMDFGSIICKKIKPKCK 180
C+L N K E+ R A+ LPK+ L+ FG IC +C
Sbjct: 168 -------CNLLHWCNTKTEEQT--RAALQSWLPKELWFELNHTLVGFGQTICLPRGRRCD 218
Query: 181 VCPLQ---LCCISYK 192
+C L LC ++K
Sbjct: 219 MCTLSSKGLCPSAFK 233
>sp|P44164|SIXA_HAEIN Phosphohistidine phosphatase SixA homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=sixA-A
PE=3 SV=1
Length = 164
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 32 YQRFLKKFPNIMSLAQAKLENVMELWSGLGYYSRARNLHICAKLVFFKYNGIFPKNFISL 91
Y R + F + +LEN E+W G+ Y A + + L K G+ K+ + +
Sbjct: 58 YVRAQETFHQVNQAFDLELENKFEIWEGITPYGHAHS--VIDYLEVLKDEGV--KSVLIV 113
Query: 92 INLPGIGQSTASAIRVFAYGKRNAIL-----------DGNVKRILIR 127
+LP +G+ A YGKRN I DGN IL+
Sbjct: 114 SHLPLVGEIVAE-----LYGKRNPISFYPATIAQLLWDGNKSEILMH 155
>sp|O95243|MBD4_HUMAN Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1
SV=1
Length = 580
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 3 PWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGY 62
PW+ + ++ I L +T IP +FL+K+P+ A +V EL LG
Sbjct: 456 PWK-------LLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGL 508
Query: 63 YSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVF 108
Y + AK + + K + I L GIG+ + R+F
Sbjct: 509 YD------LRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIF 548
>sp|Q9Z2D7|MBD4_MOUSE Methyl-CpG-binding domain protein 4 OS=Mus musculus GN=Mbd4 PE=1
SV=1
Length = 554
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 9 NTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYYSRARN 68
+ + + ++ I L +T IP FL+K+P+ A +V EL LG Y
Sbjct: 429 DPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYD---- 484
Query: 69 LHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVF 108
+ AK + + K + I L GIG+ + R+F
Sbjct: 485 --LRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIF 522
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.144 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,941,048
Number of Sequences: 539616
Number of extensions: 5067890
Number of successful extensions: 15703
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 15616
Number of HSP's gapped (non-prelim): 79
length of query: 341
length of database: 191,569,459
effective HSP length: 118
effective length of query: 223
effective length of database: 127,894,771
effective search space: 28520533933
effective search space used: 28520533933
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)