Query psy8564
Match_columns 341
No_of_seqs 345 out of 2213
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 22:03:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fsp_A A/G-specific adenine gl 100.0 7.7E-80 2.7E-84 591.7 36.0 326 1-340 30-360 (369)
2 1kg2_A A/G-specific adenine gl 100.0 2.1E-55 7.1E-60 394.2 22.3 205 1-205 21-225 (225)
3 3n5n_X A/G-specific adenine DN 100.0 1.8E-54 6.2E-59 397.5 16.8 205 1-205 32-245 (287)
4 1kea_A Possible G-T mismatches 100.0 2.3E-52 7.9E-57 373.3 19.4 194 1-195 26-220 (221)
5 1orn_A Endonuclease III; DNA r 100.0 2.2E-48 7.7E-53 348.3 20.6 187 4-194 27-214 (226)
6 2abk_A Endonuclease III; DNA-r 100.0 2.3E-48 8E-53 345.2 18.3 184 4-192 23-207 (211)
7 1pu6_A 3-methyladenine DNA gly 100.0 1.4E-36 4.7E-41 270.4 15.7 166 3-170 23-212 (218)
8 4e9f_A Methyl-CPG-binding doma 100.0 2E-32 6.8E-37 231.1 12.6 120 7-133 28-150 (161)
9 4b21_A Probable DNA-3-methylad 100.0 3.8E-30 1.3E-34 230.4 16.5 155 2-169 52-226 (232)
10 3fhg_A Mjogg, N-glycosylase/DN 100.0 4.1E-31 1.4E-35 233.4 9.3 153 2-174 25-189 (207)
11 3fhf_A Mjogg, N-glycosylase/DN 100.0 7.5E-31 2.6E-35 231.4 8.8 148 6-174 40-196 (214)
12 2h56_A DNA-3-methyladenine gly 100.0 1.6E-29 5.4E-34 227.0 12.9 162 2-171 43-218 (233)
13 3n0u_A Probable N-glycosylase/ 100.0 1.3E-29 4.3E-34 224.5 10.0 156 3-167 43-212 (219)
14 2yg9_A DNA-3-methyladenine gly 100.0 1.7E-28 5.9E-33 219.0 13.5 147 3-163 54-212 (225)
15 3s6i_A DNA-3-methyladenine gly 100.0 5.4E-28 1.9E-32 216.1 16.6 149 7-169 46-215 (228)
16 3i0w_A 8-oxoguanine-DNA-glycos 99.9 1.9E-27 6.6E-32 220.0 15.9 153 7-170 112-287 (290)
17 2xhi_A N-glycosylase/DNA lyase 99.9 1.6E-26 5.6E-31 219.4 16.6 155 7-166 149-335 (360)
18 2jhn_A ALKA, 3-methyladenine D 99.9 5.3E-26 1.8E-30 211.2 13.0 152 2-164 108-283 (295)
19 1mpg_A ALKA, 3-methyladenine D 99.9 7E-25 2.4E-29 202.5 16.9 146 6-165 109-274 (282)
20 1x51_A A/G-specific adenine DN 99.9 5.8E-25 2E-29 184.8 10.4 135 195-340 3-148 (155)
21 3ees_A Probable pyrophosphohyd 99.9 6.1E-23 2.1E-27 171.2 11.6 134 196-340 2-145 (153)
22 3hhj_A Mutator MUTT protein; n 99.9 1.4E-21 4.7E-26 164.5 10.7 132 198-340 17-155 (158)
23 2rrk_A ORF135, CTP pyrophospho 99.9 3.7E-21 1.3E-25 158.0 11.7 123 207-340 6-132 (140)
24 1mut_A MUTT, nucleoside tripho 99.8 1.6E-21 5.4E-26 157.9 7.7 121 209-340 4-128 (129)
25 3r03_A Nudix hydrolase; struct 99.8 3.5E-21 1.2E-25 159.1 8.6 121 209-340 8-134 (144)
26 3gwy_A Putative CTP pyrophosph 99.8 6.9E-21 2.4E-25 157.0 8.6 120 210-340 6-131 (140)
27 3grn_A MUTT related protein; s 99.8 1.7E-19 5.8E-24 150.9 10.8 123 207-340 5-135 (153)
28 3id9_A MUTT/nudix family prote 99.8 1.5E-18 5.1E-23 147.8 8.9 137 172-338 1-148 (171)
29 3exq_A Nudix family hydrolase; 99.8 4.2E-18 1.4E-22 143.9 11.5 122 206-339 6-135 (161)
30 3oga_A Nucleoside triphosphata 99.7 9.1E-18 3.1E-22 142.0 10.7 121 207-338 25-162 (165)
31 3q93_A 7,8-dihydro-8-oxoguanin 99.7 1.5E-17 5.3E-22 142.7 11.1 119 210-340 25-149 (176)
32 4dyw_A MUTT/nudix family prote 99.7 5.2E-17 1.8E-21 136.5 12.3 120 208-340 27-155 (157)
33 2pbt_A AP4A hydrolase; nudix p 99.7 2.3E-17 7.8E-22 134.2 9.4 113 211-339 5-126 (134)
34 2b06_A MUTT/nudix family prote 99.7 3.6E-17 1.2E-21 136.7 9.4 119 209-340 7-134 (155)
35 3i7u_A AP4A hydrolase; nudix p 99.7 6.2E-17 2.1E-21 132.8 9.1 114 210-339 4-126 (134)
36 3fk9_A Mutator MUTT protein; s 99.7 2.9E-16 9.9E-21 136.2 11.7 116 210-340 4-129 (188)
37 2fkb_A Putative nudix hydrolas 99.7 7.4E-17 2.5E-21 138.4 7.5 131 198-339 24-165 (180)
38 1vcd_A NDX1; nudix protein, di 99.7 7.1E-17 2.4E-21 130.0 6.9 112 213-340 6-122 (126)
39 1nqz_A COA pyrophosphatase (MU 99.7 2.1E-17 7.1E-22 143.8 3.7 133 179-322 3-147 (194)
40 2o1c_A DATP pyrophosphohydrola 99.6 2E-16 6.9E-21 130.8 6.9 115 212-340 12-147 (150)
41 1rya_A GDP-mannose mannosyl hy 99.6 1.8E-16 6.3E-21 132.9 4.9 116 211-338 19-152 (160)
42 1ktg_A Diadenosine tetraphosph 99.6 6.7E-16 2.3E-20 126.2 7.6 115 212-340 6-133 (138)
43 2azw_A MUTT/nudix family prote 99.6 4.3E-16 1.5E-20 128.8 6.3 115 210-340 18-145 (148)
44 2b0v_A Nudix hydrolase; struct 99.6 8.3E-16 2.8E-20 127.9 8.0 119 210-340 8-138 (153)
45 1sjy_A MUTT/nudix family prote 99.6 2E-15 6.9E-20 126.3 7.4 105 212-327 15-132 (159)
46 3cng_A Nudix hydrolase; struct 99.6 1.2E-14 3.9E-19 126.0 12.0 114 211-338 41-161 (189)
47 3f6a_A Hydrolase, nudix family 99.6 1.3E-14 4.5E-19 121.8 12.0 111 210-335 6-143 (159)
48 3eds_A MUTT/nudix family prote 99.5 1E-14 3.4E-19 121.9 8.8 104 211-330 22-140 (153)
49 1k2e_A Nudix homolog; nudix/MU 99.5 1.3E-14 4.6E-19 121.5 9.6 109 212-339 3-133 (156)
50 1q27_A Putative nudix hydrolas 99.5 9.6E-16 3.3E-20 130.3 2.1 115 213-339 38-164 (171)
51 3f13_A Putative nudix hydrolas 99.5 7.1E-14 2.4E-18 118.4 12.9 113 207-340 13-129 (163)
52 3gg6_A Nudix motif 18, nucleos 99.5 3.1E-14 1.1E-18 118.9 9.6 112 212-338 23-143 (156)
53 3o8s_A Nudix hydrolase, ADP-ri 99.5 2.2E-14 7.4E-19 126.1 9.0 113 211-339 71-193 (206)
54 3shd_A Phosphatase NUDJ; nudix 99.5 2.7E-14 9.3E-19 118.8 8.5 117 210-339 5-131 (153)
55 2pqv_A MUTT/nudix family prote 99.5 1.5E-14 5.1E-19 120.6 6.5 107 210-333 19-137 (154)
56 3e57_A Uncharacterized protein 99.5 7.1E-15 2.4E-19 129.2 4.1 124 210-338 68-203 (211)
57 1vk6_A NADH pyrophosphatase; 1 99.5 1E-13 3.6E-18 126.6 11.9 110 212-336 142-258 (269)
58 3son_A Hypothetical nudix hydr 99.5 4E-14 1.4E-18 117.3 7.3 107 219-340 18-139 (149)
59 2yyh_A MUTT domain, 8-OXO-DGTP 99.5 1.6E-13 5.4E-18 112.3 9.5 102 219-340 21-136 (139)
60 1hzt_A Isopentenyl diphosphate 99.5 3.9E-14 1.3E-18 122.6 5.2 117 213-340 36-171 (190)
61 3q1p_A Phosphohydrolase (MUTT/ 99.4 2.5E-13 8.4E-18 119.3 8.3 114 211-339 69-192 (205)
62 3i9x_A MUTT/nudix family prote 99.4 2.8E-13 9.6E-18 117.0 6.8 109 220-339 45-169 (187)
63 2qjo_A Bifunctional NMN adenyl 99.4 3.9E-13 1.3E-17 126.6 7.7 119 210-340 203-339 (341)
64 1f3y_A Diadenosine 5',5'''-P1, 99.4 9.6E-14 3.3E-18 116.5 2.1 116 211-340 16-163 (165)
65 2qjt_B Nicotinamide-nucleotide 99.4 7.7E-13 2.6E-17 125.2 8.4 119 210-340 208-346 (352)
66 2yvp_A NDX2, MUTT/nudix family 99.4 1.1E-13 3.8E-18 118.8 1.7 101 213-324 45-153 (182)
67 3u53_A BIS(5'-nucleosyl)-tetra 99.3 1.6E-12 5.6E-17 108.6 8.0 105 220-338 23-138 (155)
68 1v8y_A ADP-ribose pyrophosphat 99.3 9.1E-13 3.1E-17 111.8 5.3 102 212-324 36-143 (170)
69 2w4e_A MUTT/nudix family prote 99.3 5.9E-13 2E-17 110.1 3.1 101 213-324 9-116 (145)
70 1vhz_A ADP compounds hydrolase 99.3 1.8E-12 6.2E-17 113.1 6.3 104 212-326 51-161 (198)
71 3gz5_A MUTT/nudix family prote 99.3 2.8E-12 9.5E-17 115.4 7.4 106 221-338 37-152 (240)
72 2fb1_A Conserved hypothetical 99.3 3.3E-12 1.1E-16 113.8 7.1 103 220-336 27-137 (226)
73 3fcm_A Hydrolase, nudix family 99.3 4.5E-12 1.6E-16 110.3 7.7 112 212-339 48-181 (197)
74 1u20_A U8 snoRNA-binding prote 99.3 3.6E-12 1.2E-16 112.4 6.3 108 216-340 51-191 (212)
75 2jvb_A Protein PSU1, mRNA-deca 99.3 3.1E-12 1.1E-16 105.4 4.4 103 211-330 6-119 (146)
76 1mk1_A ADPR pyrophosphatase; n 99.2 1.6E-12 5.4E-17 114.2 2.6 102 212-325 45-158 (207)
77 2dho_A Isopentenyl-diphosphate 99.2 4.6E-11 1.6E-15 107.0 8.5 124 214-339 64-213 (235)
78 3h95_A Nucleoside diphosphate- 99.2 2.2E-11 7.4E-16 106.2 5.7 106 212-330 29-145 (199)
79 3fjy_A Probable MUTT1 protein; 99.2 3.3E-11 1.1E-15 114.8 6.8 104 221-339 38-172 (364)
80 2kdv_A RNA pyrophosphohydrolas 99.1 2.2E-10 7.6E-15 96.6 10.4 99 211-324 9-134 (164)
81 2a6t_A SPAC19A8.12; alpha/beta 99.1 1.8E-10 6.2E-15 105.3 9.3 105 209-329 100-216 (271)
82 2pny_A Isopentenyl-diphosphate 99.1 1.7E-10 5.8E-15 104.0 8.6 123 214-338 75-223 (246)
83 2fvv_A Diphosphoinositol polyp 99.1 6E-11 2.1E-15 103.1 5.4 89 220-324 53-149 (194)
84 3o6z_A GDP-mannose pyrophospha 99.1 7.8E-11 2.7E-15 102.1 4.1 101 212-324 47-165 (191)
85 1g0s_A Hypothetical 23.7 kDa p 99.0 2.1E-10 7.1E-15 100.8 5.2 102 212-324 59-178 (209)
86 2fml_A MUTT/nudix family prote 98.9 2.8E-09 9.4E-14 97.5 10.3 105 221-337 56-192 (273)
87 2dsc_A ADP-sugar pyrophosphata 98.9 1.6E-09 5.6E-14 95.2 6.6 93 221-324 77-182 (212)
88 3kvh_A Protein syndesmos; NUDT 98.9 6.2E-10 2.1E-14 94.8 3.3 66 222-304 45-115 (214)
89 3q91_A Uridine diphosphate glu 98.9 1.6E-09 5.6E-14 95.7 6.0 79 235-324 94-187 (218)
90 3qsj_A Nudix hydrolase; struct 98.9 9.8E-09 3.4E-13 91.5 10.8 119 222-340 25-209 (232)
91 1q33_A Pyrophosphatase, ADP-ri 98.8 7.6E-08 2.6E-12 88.7 13.3 101 222-339 140-274 (292)
92 2xsq_A U8 snoRNA-decapping enz 98.7 1.6E-08 5.6E-13 89.2 6.2 86 221-323 65-171 (217)
93 3rh7_A Hypothetical oxidoreduc 98.6 5.7E-08 2E-12 90.6 7.1 107 210-340 183-292 (321)
94 3dup_A MUTT/nudix family prote 98.5 1.9E-07 6.4E-12 86.1 8.6 99 215-324 124-241 (300)
95 3bho_A Cleavage and polyadenyl 98.2 8.6E-07 2.9E-11 76.3 3.2 47 212-274 61-112 (208)
96 2jg6_A DNA-3-methyladenine gly 95.4 0.11 3.8E-06 43.8 10.0 71 8-78 29-104 (186)
97 2ofk_A 3-methyladenine DNA gly 94.7 0.23 8E-06 41.8 9.9 71 8-78 29-104 (183)
98 2edu_A Kinesin-like protein KI 93.6 0.17 5.8E-06 38.1 6.4 60 42-109 31-90 (98)
99 1x2i_A HEF helicase/nuclease; 91.3 0.18 6E-06 35.6 3.6 24 86-109 43-66 (75)
100 2duy_A Competence protein come 91.0 0.12 4E-06 36.9 2.4 52 43-106 19-70 (75)
101 1kft_A UVRC, excinuclease ABC 90.1 0.2 6.7E-06 35.9 3.0 22 87-108 54-75 (78)
102 1z00_A DNA excision repair pro 90.1 0.23 7.8E-06 36.6 3.4 24 86-109 48-71 (89)
103 2ztd_A Holliday junction ATP-d 90.1 0.16 5.6E-06 43.9 2.9 27 86-112 120-146 (212)
104 3vdp_A Recombination protein R 89.9 0.1 3.5E-06 44.9 1.5 28 86-113 23-50 (212)
105 2a1j_B DNA excision repair pro 89.9 0.24 8.2E-06 36.6 3.4 24 86-109 61-84 (91)
106 1ixr_A Holliday junction DNA h 89.6 0.2 7E-06 42.6 3.1 26 86-111 104-129 (191)
107 2duy_A Competence protein come 89.3 0.22 7.6E-06 35.4 2.7 22 87-108 25-46 (75)
108 1cuk_A RUVA protein; DNA repai 88.7 0.26 8.8E-06 42.4 3.1 24 86-109 105-128 (203)
109 2ihm_A POL MU, DNA polymerase 88.1 1 3.6E-05 42.1 7.2 57 51-109 25-81 (360)
110 4glx_A DNA ligase; inhibitor, 87.9 0.84 2.9E-05 45.5 6.7 91 28-129 455-577 (586)
111 1vdd_A Recombination protein R 87.9 0.34 1.2E-05 42.0 3.3 28 86-113 9-36 (228)
112 2fmp_A DNA polymerase beta; nu 87.1 1.4 4.9E-05 40.7 7.4 57 51-109 20-77 (335)
113 2bcq_A DNA polymerase lambda; 87.1 1.4 4.9E-05 40.7 7.4 43 65-109 35-77 (335)
114 1jms_A Terminal deoxynucleotid 86.5 1.3 4.4E-05 41.8 6.8 57 51-109 44-100 (381)
115 2a1j_A DNA repair endonuclease 86.4 1.7 5.9E-05 29.6 5.8 40 31-73 16-55 (63)
116 2i5h_A Hypothetical protein AF 86.4 0.36 1.2E-05 41.1 2.6 46 83-132 126-171 (205)
117 1s5l_U Photosystem II 12 kDa e 86.3 0.31 1.1E-05 38.7 2.1 20 87-106 61-80 (134)
118 1s5l_U Photosystem II 12 kDa e 86.2 0.38 1.3E-05 38.2 2.5 48 44-109 56-109 (134)
119 2a1j_A DNA repair endonuclease 85.8 0.52 1.8E-05 32.3 2.8 22 88-109 3-24 (63)
120 3arc_U Photosystem II 12 kDa e 85.6 0.41 1.4E-05 36.0 2.4 22 86-107 23-44 (97)
121 1dgs_A DNA ligase; AMP complex 85.3 0.81 2.8E-05 46.3 5.0 89 30-128 452-571 (667)
122 3arc_U Photosystem II 12 kDa e 84.3 0.35 1.2E-05 36.4 1.4 57 40-108 15-71 (97)
123 2kp7_A Crossover junction endo 82.2 1.8 6.3E-05 31.7 4.6 42 65-108 36-77 (87)
124 2owo_A DNA ligase; protein-DNA 81.7 2.4 8.4E-05 42.8 6.8 76 31-109 458-564 (671)
125 1z00_B DNA repair endonuclease 81.6 2.7 9.3E-05 30.5 5.3 40 31-73 30-69 (84)
126 1z00_B DNA repair endonuclease 81.5 0.81 2.8E-05 33.4 2.4 26 86-111 15-40 (84)
127 2edu_A Kinesin-like protein KI 80.8 0.96 3.3E-05 33.8 2.7 23 87-109 38-60 (98)
128 2bgw_A XPF endonuclease; hydro 79.2 1.7 5.9E-05 37.3 4.2 17 91-107 164-180 (219)
129 2ztd_A Holliday junction ATP-d 79.0 1.1 3.7E-05 38.7 2.7 43 88-132 87-132 (212)
130 1ixr_A Holliday junction DNA h 78.6 1.2 4.1E-05 37.7 2.9 20 89-108 72-91 (191)
131 4gfj_A Topoisomerase V; helix- 77.1 5.6 0.00019 37.7 7.0 70 33-106 532-639 (685)
132 3c1y_A DNA integrity scanning 76.9 2.4 8.1E-05 39.7 4.6 47 31-79 327-373 (377)
133 1z00_A DNA excision repair pro 73.5 2.3 7.7E-05 31.0 2.9 24 87-111 17-40 (89)
134 1cuk_A RUVA protein; DNA repai 73.5 1.8 6E-05 37.1 2.6 20 89-108 73-92 (203)
135 1kft_A UVRC, excinuclease ABC 73.0 1.6 5.4E-05 31.0 1.9 23 88-111 23-45 (78)
136 2csb_A Topoisomerase V, TOP61; 72.0 18 0.0006 32.1 8.6 68 32-113 367-434 (519)
137 2a1j_B DNA excision repair pro 70.5 3 0.0001 30.5 2.9 23 88-111 31-53 (91)
138 3c1y_A DNA integrity scanning 70.0 3.5 0.00012 38.5 4.0 33 73-105 328-363 (377)
139 1x2i_A HEF helicase/nuclease; 68.3 3.7 0.00013 28.4 2.9 23 88-111 13-35 (75)
140 4gfj_A Topoisomerase V; helix- 67.3 6.8 0.00023 37.1 5.2 39 32-73 481-519 (685)
141 2fmp_A DNA polymerase beta; nu 63.8 2.8 9.4E-05 38.7 1.9 24 85-108 94-117 (335)
142 1z3e_B DNA-directed RNA polyme 63.4 8.1 0.00028 27.2 3.9 48 58-107 12-59 (73)
143 2rhf_A DNA helicase RECQ; HRDC 63.1 8.2 0.00028 27.1 4.0 21 84-104 42-62 (77)
144 3k4g_A DNA-directed RNA polyme 63.1 9 0.00031 27.9 4.2 49 58-108 15-63 (86)
145 2ihm_A POL MU, DNA polymerase 61.8 3.1 0.00011 38.8 1.9 26 83-108 96-121 (360)
146 2w9m_A Polymerase X; SAXS, DNA 60.8 3.9 0.00013 40.6 2.5 25 84-108 92-116 (578)
147 3idw_A Actin cytoskeleton-regu 60.5 37 0.0013 23.7 6.7 63 14-82 5-67 (72)
148 3bqs_A Uncharacterized protein 60.0 8.7 0.0003 28.4 3.7 42 88-129 3-44 (93)
149 3gfk_B DNA-directed RNA polyme 59.4 2.5 8.7E-05 30.3 0.6 48 58-107 19-66 (79)
150 1vq8_Y 50S ribosomal protein L 59.1 2 6.8E-05 37.8 0.0 12 264-275 217-228 (241)
151 3im1_A Protein SNU246, PRE-mRN 58.9 14 0.00047 33.7 5.7 44 58-106 131-174 (328)
152 2bcq_A DNA polymerase lambda; 58.7 6.8 0.00023 36.1 3.6 21 88-108 95-115 (335)
153 1wud_A ATP-dependent DNA helic 57.2 11 0.00039 27.3 3.9 20 84-103 50-69 (89)
154 2kv2_A Bloom syndrome protein; 57.2 9.1 0.00031 27.5 3.4 19 84-102 44-62 (85)
155 1jms_A Terminal deoxynucleotid 57.2 4.2 0.00014 38.2 1.9 26 83-108 115-140 (381)
156 3r8n_M 30S ribosomal protein S 57.0 6.2 0.00021 30.4 2.5 46 83-128 7-59 (114)
157 3b0x_A DNA polymerase beta fam 56.1 5.3 0.00018 39.6 2.5 25 84-108 88-112 (575)
158 1wcn_A Transcription elongatio 53.6 9.8 0.00033 26.4 2.9 40 33-75 21-62 (70)
159 3sgi_A DNA ligase; HET: DNA AM 53.3 2.8 9.6E-05 41.9 0.0 23 87-109 559-581 (615)
160 3u5c_S 40S ribosomal protein S 53.3 7.8 0.00027 31.2 2.6 41 88-128 29-73 (146)
161 2e1f_A Werner syndrome ATP-dep 53.1 12 0.00042 28.0 3.6 21 84-104 52-72 (103)
162 3mab_A Uncharacterized protein 50.0 11 0.00038 27.8 2.8 25 88-112 3-27 (93)
163 3iz6_M 40S ribosomal protein S 49.9 10 0.00035 30.7 2.8 46 83-128 19-71 (152)
164 3j20_O 30S ribosomal protein S 49.9 9.1 0.00031 30.9 2.5 40 88-127 22-65 (148)
165 2rrd_A BLM HRDC domain, HRDC d 49.3 15 0.00053 27.4 3.6 20 84-103 59-78 (101)
166 2xzm_M RPS18E; ribosome, trans 47.2 10 0.00036 30.8 2.5 22 88-109 29-50 (155)
167 2q0z_X Protein Pro2281; SEC63, 45.9 41 0.0014 30.6 6.7 45 58-106 134-178 (339)
168 2vqe_M 30S ribosomal protein S 43.6 12 0.00041 29.3 2.2 28 82-109 7-37 (126)
169 3c65_A Uvrabc system protein C 43.0 5.1 0.00017 34.8 0.0 21 88-108 172-192 (226)
170 2dgz_A Werner syndrome protein 40.1 15 0.0005 28.1 2.2 18 84-101 59-76 (113)
171 1u9l_A Transcription elongatio 39.6 26 0.00089 24.3 3.3 42 34-78 21-64 (70)
172 2nrt_A Uvrabc system protein C 39.0 18 0.00061 31.2 2.8 22 89-111 168-189 (220)
173 2ziu_A MUS81 protein; helix-ha 38.0 37 0.0013 30.4 5.0 20 89-108 237-256 (311)
174 2w9m_A Polymerase X; SAXS, DNA 37.4 27 0.00093 34.5 4.3 17 90-106 132-148 (578)
175 2bgw_A XPF endonuclease; hydro 37.3 20 0.00068 30.5 2.9 12 65-76 126-137 (219)
176 2va8_A SSO2462, SKI2-type heli 36.0 1E+02 0.0035 30.8 8.5 42 66-111 638-679 (715)
177 1ci4_A Protein (barrier-TO-aut 34.8 86 0.0029 22.8 5.4 26 87-112 16-41 (89)
178 1exn_A 5'-exonuclease, 5'-nucl 32.1 19 0.00065 32.4 2.0 18 91-108 205-222 (290)
179 1b22_A DNA repair protein RAD5 31.9 29 0.00098 26.5 2.7 26 86-111 55-80 (114)
180 3q8k_A Flap endonuclease 1; he 31.5 21 0.00072 32.8 2.2 18 91-108 234-251 (341)
181 4ic1_A Uncharacterized protein 30.4 13 0.00045 31.4 0.6 16 176-191 189-204 (206)
182 1vq8_Y 50S ribosomal protein L 25.3 15 0.00051 32.1 0.0 49 57-109 20-68 (241)
183 1coo_A RNA polymerase alpha su 25.1 46 0.0016 24.7 2.7 50 57-108 26-75 (98)
184 3b0x_A DNA polymerase beta fam 24.5 1.5E+02 0.005 29.1 7.1 57 52-109 12-73 (575)
185 3bzc_A TEX; helix-turn-helix, 24.5 52 0.0018 33.8 3.8 54 48-109 505-558 (785)
186 1b22_A DNA repair protein RAD5 24.1 37 0.0013 25.9 2.1 45 30-77 36-82 (114)
187 4f92_B U5 small nuclear ribonu 23.5 1.1E+02 0.0038 34.4 6.5 53 55-111 1527-1579(1724)
188 1rxw_A Flap structure-specific 23.0 36 0.0012 31.0 2.1 18 91-108 237-254 (336)
189 2nrt_A Uvrabc system protein C 22.7 1.1E+02 0.0038 26.1 5.1 21 86-108 197-218 (220)
190 3ory_A Flap endonuclease 1; hy 22.4 37 0.0013 31.4 2.1 17 93-109 255-271 (363)
191 2izo_A FEN1, flap structure-sp 21.8 39 0.0013 31.0 2.1 18 91-108 235-253 (346)
192 3bzc_A TEX; helix-turn-helix, 21.0 99 0.0034 31.7 5.1 23 86-108 505-527 (785)
193 1a76_A Flap endonuclease-1 pro 20.7 43 0.0015 30.3 2.1 16 93-108 229-244 (326)
194 1ul1_X Flap endonuclease-1; pr 20.1 46 0.0016 30.9 2.2 16 93-108 236-251 (379)
195 3qe9_Y Exonuclease 1; exonucle 20.1 46 0.0016 30.6 2.2 17 92-108 228-244 (352)
No 1
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=100.00 E-value=7.7e-80 Score=591.74 Aligned_cols=326 Identities=27% Similarity=0.525 Sum_probs=305.1
Q ss_pred CCCCCCCCChHHHHHHHHHhhhcChhhHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhhcCcHHHHHHHHHHHHHhHHHh
Q psy8564 1 MLPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYYSRARNLHICAKLVFFKY 80 (341)
Q Consensus 1 ~~pwr~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~~~~~~l~~~l~~~G~~~rA~~i~~~a~~i~~~~ 80 (341)
++|||.+.|||++||++||+|||++++|.+++.+|+++||||++|+++++++|.++|+++|||+||++|+++|+.+.++|
T Consensus 30 ~lpw~~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~a~~~~l~~~i~~~G~~~ra~~l~~~a~~~~~~~ 109 (369)
T 3fsp_A 30 DLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRY 109 (369)
T ss_dssp CCGGGSCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHHTTTTSSCTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCChHHHHHHHHHhccCcHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHhcChHHHHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchHHHhcCCCCCHHHHHHHHHHHhCCeeeccChhHHHHHHHHhcccCCcchHHHHHHHHHHHHhhCCCCCHHHH
Q psy8564 81 NGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIY 160 (341)
Q Consensus 81 ~g~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 160 (341)
+|++|+++++|++|||||+|||++||+|+||++.++||+||.|+++|+++++.+++...+.+.+++.++.++|.+.+++|
T Consensus 110 ~g~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 189 (369)
T 3fsp_A 110 GGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAYENPGAF 189 (369)
T ss_dssp TTCCCCSHHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHCCSSSHHHH
T ss_pred CCCChhHHHHHhcCCCcCHHHHHHHHHHHCCCCcccccHHHHHHHHHHcCcccCccccchHHHHHHHHHHhCChhhHHHH
Confidence 99999999999999999999999999999999999999999999999999887666667778899999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCCCCCccccccccccCccccccccc-cCcccceeEEEEEEE-eCCEEEEEEeCCCCcccccc
Q psy8564 161 TQGLMDFGSIICKKIKPKCKVCPLQLCCISYKTNKINNFLIKN-KKNIKNCSIIMFIVI-DDDYVLFQKRSNKGIWGGLL 238 (341)
Q Consensus 161 ~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~~~-kk~~~~~~~~~~ii~-~~g~vLl~kR~~~g~~~GlW 238 (341)
|++||+||+++|+|++|+|+.|||++.|.+++.+.+..||+|+ |++++.+.++++|+. ++|+|||.||+.+|+|+|+|
T Consensus 190 ~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~PvK~~kk~~~~~~~~~~vi~~~~g~vLL~rR~~~g~~~GlW 269 (369)
T 3fsp_A 190 NEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQVPLAVAVLADDEGRVLIRKRDSTGLLANLW 269 (369)
T ss_dssp HHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTCGGGCSCCCCCCCCEEEEEEEEEEECSSSEEEEEECCSSSTTTTCE
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCChhhhHHHhcCCcccCCccccccCcceEEEEEEEEEeCCCEEEEEECCCCCCcCCcc
Confidence 9999999999999999999999999999999999999999999 556666667666666 67999999999999999999
Q ss_pred cccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEeeceEEEEEEEEEEecccccccCCCCce
Q psy8564 239 SFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKLTHLQFKIVPCHIFLKKCFLKENKNNFI 315 (341)
Q Consensus 239 EFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~~h~~~~l~~~~~~~~~~~~~~~~~~~~ 315 (341)
+||| +|.| ++ ++|+.||+.||+|++ .....++.+.|.|+|+++++++|.+++.+... ++++++
T Consensus 270 efPGG~ve~g-t~-----------~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~~~~~~~~~~~~~--e~~~~~ 335 (369)
T 3fsp_A 270 EFPSCETDGA-DG-----------KEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFPGRLVHGGP--VEEPYR 335 (369)
T ss_dssp ECCEEECSSS-CT-----------HHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEEEEEEEECCSSC--CCTTEE
T ss_pred cCCCcccCCC-Cc-----------HHHHHHHHHHHhCCceeeecccccEEEEcceEEEEEEEEEEEEcCCCC--CccccE
Confidence 9999 8888 87 899999999999999 77788999999999999999999999766422 348899
Q ss_pred eeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 316 WYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 316 W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
|++++++.++++|++++++++.+.+
T Consensus 336 Wv~~~el~~~~l~~~~~~il~~l~~ 360 (369)
T 3fsp_A 336 LAPEDELKAYAFPVSHQRVWREYKE 360 (369)
T ss_dssp EEEGGGGGGSCCCHHHHHHHHHHHH
T ss_pred EeeHHHhhhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999998753
No 2
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=100.00 E-value=2.1e-55 Score=394.16 Aligned_cols=205 Identities=47% Similarity=0.850 Sum_probs=196.4
Q ss_pred CCCCCCCCChHHHHHHHHHhhhcChhhHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhhcCcHHHHHHHHHHHHHhHHHh
Q psy8564 1 MLPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYYSRARNLHICAKLVFFKY 80 (341)
Q Consensus 1 ~~pwr~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~~~~~~l~~~l~~~G~~~rA~~i~~~a~~i~~~~ 80 (341)
++|||...|||++||++||+|||+++++.+++.+|++.||||++|+++++++|.++|+++|||+||++|+++|+.+.++|
T Consensus 21 ~l~w~~~~~pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~pt~~~la~~~~~~l~~~i~~~G~~~kA~~l~~~a~~i~~~~ 100 (225)
T 1kg2_A 21 TLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLH 100 (225)
T ss_dssp CSGGGSSCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCSSHHHHHHSCHHHHHHHHTTSCCTHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHCcCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchHHHhcCCCCCHHHHHHHHHHHhCCeeeccChhHHHHHHHHhcccCCcchHHHHHHHHHHHHhhCCCCCHHHH
Q psy8564 81 NGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIY 160 (341)
Q Consensus 81 ~g~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 160 (341)
+|++|+++++|++|||||+|||++||+|+||++.++||+||+|+++|+++++...+...+++.++++++.++|.+.++.+
T Consensus 101 ~g~~p~~~~~L~~lpGIG~~TA~~il~~a~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 180 (225)
T 1kg2_A 101 GGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERF 180 (225)
T ss_dssp TTSCCCSHHHHHTSTTCCHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHTCCSCTTSHHHHHHHHHHHHHHCCSTTHHHH
T ss_pred CCCchHHHHHHhcCCCCcHHHHHHHHHHhCCCCcceeCHHHHHHHHHHcCCCCCCCccchHHHHHHHHHHHCCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999886666667888999999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCCCCCCccccccccccCccccccccccC
Q psy8564 161 TQGLMDFGSIICKKIKPKCKVCPLQLCCISYKTNKINNFLIKNKK 205 (341)
Q Consensus 161 ~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~~~kk 205 (341)
|++||+||+.+|++++|+|+.|||++.|+++..+.+..+|+|++|
T Consensus 181 ~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~~~~~ 225 (225)
T 1kg2_A 181 NQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKPK 225 (225)
T ss_dssp HHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHTCGGGSSCCCC-
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCChhhCHHHHcCCcccCCCCCCC
Confidence 999999999999999999999999999999999999999997743
No 3
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-54 Score=397.52 Aligned_cols=205 Identities=37% Similarity=0.723 Sum_probs=195.4
Q ss_pred CCCCCC--------CCChHHHHHHHHHhhhcChhhHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhhcCcHHHHHHHHHH
Q psy8564 1 MLPWQN--------TKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYYSRARNLHIC 72 (341)
Q Consensus 1 ~~pwr~--------~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~~~~~~l~~~l~~~G~~~rA~~i~~~ 72 (341)
+||||. +.|||++||++||+|||++++|.+++.+|+++||||++|+++++++|.++|+++|||+||++|+++
T Consensus 32 ~lPWR~~~~~~~d~~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fptpe~La~a~~eel~~~ir~lG~~~KA~~L~~~ 111 (287)
T 3n5n_X 32 DLPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRRLQEG 111 (287)
T ss_dssp CCHHHHHHHHCCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred CCCCcCcCccccCCCCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 689998 468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHhCCCCccchHHHhc-CCCCCHHHHHHHHHHHhCCeeeccChhHHHHHHHHhcccCCcchHHHHHHHHHHHHhh
Q psy8564 73 AKLVFFKYNGIFPKNFISLIN-LPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDL 151 (341)
Q Consensus 73 a~~i~~~~~g~~p~~~~~L~~-l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~~ 151 (341)
|+.++++|+|.+|+++++|++ |||||+|||++||+|+||++.++||+||+|+++|+++++...+...+++.++..++.+
T Consensus 112 A~~i~~~~~g~~p~~~~~Ll~~LpGIG~kTA~~iL~~a~g~p~~~VDt~V~Rv~~Rlg~i~~~~~~~~~~~~l~~~a~~~ 191 (287)
T 3n5n_X 112 ARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQL 191 (287)
T ss_dssp HHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHh
Confidence 999999999999999999998 9999999999999999999999999999999999998876666667888899989999
Q ss_pred CCCCCHHHHHHHHHHHhhhhcccCCCCCCCCCccccccccccCccccccccccC
Q psy8564 152 LPKKNIEIYTQGLMDFGSIICKKIKPKCKVCPLQLCCISYKTNKINNFLIKNKK 205 (341)
Q Consensus 152 ~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~~~kk 205 (341)
+|.+.+++||++||+||+.+|++++|+|+.|||++.|++++.+....+|.+++.
T Consensus 192 lp~~~~~~~h~~L~~~Gr~iC~~r~P~C~~Cpl~~~C~~~~~~~~~~~~~~~~~ 245 (287)
T 3n5n_X 192 VDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVEQEQLLASGSL 245 (287)
T ss_dssp SCSSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHhHHHcCCCCCCCCCCCChhhhHHHHhcchhhhhhhhcc
Confidence 999999999999999999999999999999999999999999999999987744
No 4
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=100.00 E-value=2.3e-52 Score=373.25 Aligned_cols=194 Identities=30% Similarity=0.591 Sum_probs=182.9
Q ss_pred CCCCCCCCChHHHHHHHHHhhhcChhhHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhhcCcH-HHHHHHHHHHHHhHHH
Q psy8564 1 MLPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYY-SRARNLHICAKLVFFK 79 (341)
Q Consensus 1 ~~pwr~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~~~~~~l~~~l~~~G~~-~rA~~i~~~a~~i~~~ 79 (341)
++|||...|||++||++||+|||+++++.+++.+|+++||||++|+++++++|.++|+++||| +||++|+++|+.+.++
T Consensus 26 ~~pw~~~~~pfe~lv~~IlsQqts~~~~~~~~~~l~~~fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~ 105 (221)
T 1kea_A 26 DFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVIND 105 (221)
T ss_dssp CCGGGGCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred hCcCCCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999 5999999999999999
Q ss_pred hCCCCccchHHHhcCCCCCHHHHHHHHHHHhCCeeeccChhHHHHHHHHhcccCCcchHHHHHHHHHHHHhhCCCCCHHH
Q psy8564 80 YNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEI 159 (341)
Q Consensus 80 ~~g~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 159 (341)
|+|++|+++++|++|||||+|||++|++|++|++.++||+||+|+++|++|+...+++.. ++.++++++.++|.+.+++
T Consensus 106 ~~g~~p~~~~~L~~lpGIG~~TA~~il~~~~~~~~~~vD~~v~Rv~~rl~gl~~~~~~~~-~~~l~~~ae~~~P~~~~~~ 184 (221)
T 1kea_A 106 YGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYN-HKALWELAETLVPGGKCRD 184 (221)
T ss_dssp HTTSCCSCHHHHHTSTTCCHHHHHHHHHHTTCCCCCCCCHHHHHHHHHHHCGGGTTCCTT-SHHHHHHHHHHSCTTCHHH
T ss_pred hCCCchHHHHHHHhCCCCcHHHHHHHHHHhcCCCcceecHHHHHHHHHHhCCCCCCCcHH-HHHHHHHHHHhCChhhHHH
Confidence 999999999999999999999999999999999999999999999999988865544333 5778899999999999999
Q ss_pred HHHHHHHHhhhhcccCCCCCCCCCccccccccccCc
Q psy8564 160 YTQGLMDFGSIICKKIKPKCKVCPLQLCCISYKTNK 195 (341)
Q Consensus 160 ~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~ 195 (341)
+|++||+||+.+|++++|+|+.|||++.|+++..+.
T Consensus 185 ~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~ 220 (221)
T 1kea_A 185 FNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKCS 220 (221)
T ss_dssp HHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHTC-
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCChhhchhhhcCC
Confidence 999999999999999999999999999999987654
No 5
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=100.00 E-value=2.2e-48 Score=348.26 Aligned_cols=187 Identities=24% Similarity=0.412 Sum_probs=172.6
Q ss_pred CCCCCChHHHHHHHHHhhhcChhhHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhhcCcH-HHHHHHHHHHHHhHHHhCC
Q psy8564 4 WQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYY-SRARNLHICAKLVFFKYNG 82 (341)
Q Consensus 4 wr~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~~~~~~l~~~l~~~G~~-~rA~~i~~~a~~i~~~~~g 82 (341)
|....|||++||++||+|||++++|.+++.+|+++||||++|+++++++|.++|+++||| +||++|+++|+.+.++|+|
T Consensus 27 ~l~~~~pfe~Lv~~IlsQqts~~~v~~~~~~l~~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g 106 (226)
T 1orn_A 27 ELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG 106 (226)
T ss_dssp CSCCSSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Confidence 345689999999999999999999999999999999999999999999999999999999 5999999999999999999
Q ss_pred CCccchHHHhcCCCCCHHHHHHHHHHHhCCeeeccChhHHHHHHHHhcccCCcchHHHHHHHHHHHHhhCCCCCHHHHHH
Q psy8564 83 IFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQ 162 (341)
Q Consensus 83 ~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 162 (341)
++|+++++|++|||||+|||++|++|+||++.++||+|+.|++.|++.++...++. .+++.++.++|.+.++++|+
T Consensus 107 ~~p~~~~~L~~lpGIG~~TA~~il~~a~g~~~~~vD~~v~Rv~~rlg~~~~~~~~~----~~~~~l~~~~p~~~~~~~~~ 182 (226)
T 1orn_A 107 EVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVL----EVEKTLMKIIPKEEWSITHH 182 (226)
T ss_dssp SCCSCHHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHH----HHHHHHHHHSCGGGHHHHHH
T ss_pred CcHHHHHHHHHCCCccHHHHHHHHHHHCCCceeeeCHHHHHHHHHhCCCCCCCCHH----HHHHHHHHhcChhhHHHHHH
Confidence 99999999999999999999999999999999999999999999996655344444 34455677899999999999
Q ss_pred HHHHHhhhhcccCCCCCCCCCccccccccccC
Q psy8564 163 GLMDFGSIICKKIKPKCKVCPLQLCCISYKTN 194 (341)
Q Consensus 163 ~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 194 (341)
+||+||+.+|++++|+|+.|||++.|+++..+
T Consensus 183 ~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 214 (226)
T 1orn_A 183 RMIFFGRYHCKAQSPQCPSCPLLHLCREGKKR 214 (226)
T ss_dssp HHHHHHHHTSCSSCCCGGGCTTGGGCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCChhhhhhHhhc
Confidence 99999999999999999999999999998653
No 6
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=100.00 E-value=2.3e-48 Score=345.22 Aligned_cols=184 Identities=19% Similarity=0.292 Sum_probs=171.2
Q ss_pred CCCCCChHHHHHHHHHhhhcChhhHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhhcCcH-HHHHHHHHHHHHhHHHhCC
Q psy8564 4 WQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYY-SRARNLHICAKLVFFKYNG 82 (341)
Q Consensus 4 wr~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~~~~~~l~~~l~~~G~~-~rA~~i~~~a~~i~~~~~g 82 (341)
|+...|||++||++||+|||++++|.+++.+|++.||||++|+++++++|.++|+++||| +||++|+++|+.+.++|+|
T Consensus 23 ~~~~~~pfe~lv~~Il~qqts~~~v~~~~~~l~~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g 102 (211)
T 2abk_A 23 ELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG 102 (211)
T ss_dssp SSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 667889999999999999999999999999999999999999999999999999999999 4999999999999999999
Q ss_pred CCccchHHHhcCCCCCHHHHHHHHHHHhCCeeeccChhHHHHHHHHhcccCCcchHHHHHHHHHHHHhhCCCCCHHHHHH
Q psy8564 83 IFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQ 162 (341)
Q Consensus 83 ~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 162 (341)
++|+++++|++|||||+|||++|++|++|++.++||+|+.|+++|+ |+....++ +.+++.++.++|.+.++.+|+
T Consensus 103 ~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rl-gl~~~~~~----~~~~~~~~~~~p~~~~~~~~~ 177 (211)
T 2abk_A 103 EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRT-QFAPGKNV----EQVEEKLLKVVPAEFKVDCHH 177 (211)
T ss_dssp SCCSCHHHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-CSSCCSSH----HHHHHHHHHHSCGGGTTTHHH
T ss_pred CchHHHHHHHhCCCCChHHHHHHHHHHCCCCcCCcCHHHHHHHHHh-CCCCCCCH----HHHHHHHHHhcChhhHHHHHH
Confidence 9999999999999999999999999999999999999999999998 45433444 345566778999999999999
Q ss_pred HHHHHhhhhcccCCCCCCCCCccccccccc
Q psy8564 163 GLMDFGSIICKKIKPKCKVCPLQLCCISYK 192 (341)
Q Consensus 163 ~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~ 192 (341)
+||+||+.+|++++|+|+.|||++.|+++.
T Consensus 178 ~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~ 207 (211)
T 2abk_A 178 WLILHGRYTCIARKPRCGSCIIEDLCEYKE 207 (211)
T ss_dssp HHHHHHHHTSCSSSCCGGGCTTGGGCCCTT
T ss_pred HHHHHHHHHCCCCCCCCCCCCChhhCCCcC
Confidence 999999999999999999999999999864
No 7
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=100.00 E-value=1.4e-36 Score=270.40 Aligned_cols=166 Identities=16% Similarity=0.230 Sum_probs=149.6
Q ss_pred CCCCCCChHHHHHHHHHhhhcChhhHHHHHHHHHHh-CCC------HHHHHhCCHHHHHHHHhhcCcHH-HHHHHHHHHH
Q psy8564 3 PWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKK-FPN------IMSLAQAKLENVMELWSGLGYYS-RARNLHICAK 74 (341)
Q Consensus 3 pwr~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~-~pt------~~~la~~~~~~l~~~l~~~G~~~-rA~~i~~~a~ 74 (341)
.||...|||++||++||+|||+++++.+++.+|+++ ||| |++|+++++++|.++|+++|||+ ||++|+++|+
T Consensus 23 ~~~~~~dpfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~ 102 (218)
T 1pu6_A 23 WWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSG 102 (218)
T ss_dssp TSSTTTTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999 999 99999999999999999999996 9999999999
Q ss_pred HhHHHhCC----CCccchHHHhcCCCCCHHHHHHHHHHHhCCeeeccChhHHHHHHHHhcccCCcchHHHHHHHHHHHHh
Q psy8564 75 LVFFKYNG----IFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAID 150 (341)
Q Consensus 75 ~i~~~~~g----~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~ 150 (341)
.+.++|+| +.|+++++|++|||||+|||++||+|++|++.++||+|+.|++.|+ |+. ..++.++++.+++...+
T Consensus 103 ~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~~~~vD~~v~Ri~~rl-g~~-~~~~~~~~~~l~~~~p~ 180 (218)
T 1pu6_A 103 NILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKL-GIE-IEDYDELQHFFEKGVQE 180 (218)
T ss_dssp HHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHT-TCC-CCSHHHHHHHHHHHHHT
T ss_pred HHHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHHCCCCccccCHHHHHHHHHc-CCC-CCCHHHHHHHHHHhhhh
Confidence 99999988 7889999999999999999999999999999999999999999997 554 45666777766653222
Q ss_pred hCC------------CCCHHHHHHHHHHHhhh
Q psy8564 151 LLP------------KKNIEIYTQGLMDFGSI 170 (341)
Q Consensus 151 ~~p------------~~~~~~~~~~l~~~G~~ 170 (341)
.+| .+.+.+||..|++||+.
T Consensus 181 ~lp~~~~~~~~~~~~~~~~~~~h~liv~~Gk~ 212 (218)
T 1pu6_A 181 NLNSALALYENTISLAQLYARFHGKIVEFSKQ 212 (218)
T ss_dssp THHHHHHTTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhcccccchHHHHHHHHHHHHHHhhh
Confidence 444 34589999999999997
No 8
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.98 E-value=2e-32 Score=231.13 Aligned_cols=120 Identities=23% Similarity=0.347 Sum_probs=111.6
Q ss_pred CCChHHHHHHHHHhhhcChhhHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhhcCcHH-HHHHHHHHHHHhHHHhCCCCc
Q psy8564 7 TKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYYS-RARNLHICAKLVFFKYNGIFP 85 (341)
Q Consensus 7 ~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~~~~~~l~~~l~~~G~~~-rA~~i~~~a~~i~~~~~g~~p 85 (341)
.+|||++||++||||||++++|.+++.+|+++||||++|+++++++|.++|+++|||+ ||++|+++++.+ +|
T Consensus 28 ~~dP~~vLVs~ILsqQT~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~-------vp 100 (161)
T 4e9f_A 28 FHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEY-------LT 100 (161)
T ss_dssp TTSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHH-------HH
T ss_pred cCChHHHHHHHHHHhhCcHHHHHHHHHHHHHHCCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCCc-------CC
Confidence 4799999999999999999999999999999999999999999999999999999995 999999998755 57
Q ss_pred cchHHHhcCCCCCHHHHHHHHHHHhCC--eeeccChhHHHHHHHHhcccC
Q psy8564 86 KNFISLINLPGIGQSTASAIRVFAYGK--RNAILDGNVKRILIRVLGINC 133 (341)
Q Consensus 86 ~~~~~L~~l~GIG~~tA~~il~~~~~~--~~~~vD~~v~Rvl~Rl~~~~~ 133 (341)
+++++|++|||||+|||++|++||+|. +++++|.|++|++++++...+
T Consensus 101 ~~~~~L~~LpGVG~yTAdav~~F~~~e~~~V~p~D~~l~r~l~wl~~~~e 150 (161)
T 4e9f_A 101 KQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHE 150 (161)
T ss_dssp SCCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHHHHTC-
T ss_pred CChhhhhcCCCchHHHHHHHHHHHCCCCCCCCCCcHHHHHHHHHHHcCcc
Confidence 889999999999999999999999995 689999999999999865443
No 9
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=99.97 E-value=3.8e-30 Score=230.40 Aligned_cols=155 Identities=16% Similarity=0.231 Sum_probs=131.2
Q ss_pred CCCCCCCChHHHHHHHHHhhhcChhhHHHHHHHHHHh------CCCHHHHHhCCHHHHHHHHhhcCcH-HHHHHHHHHHH
Q psy8564 2 LPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKK------FPNIMSLAQAKLENVMELWSGLGYY-SRARNLHICAK 74 (341)
Q Consensus 2 ~pwr~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~------~pt~~~la~~~~~~l~~~l~~~G~~-~rA~~i~~~a~ 74 (341)
+||+...|||++||++||+|||+++++.+++.+|.++ ||||++|+++++++| +.+||+ +||++|+++|+
T Consensus 52 l~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~L----r~~Gl~~~Ka~~l~~~A~ 127 (232)
T 4b21_A 52 LTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETL----HECGFSKLKSQEIHIVAE 127 (232)
T ss_dssp CCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHH----HTTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHH----HHcCCcHHHHHHHHHHHH
Confidence 4666788999999999999999999999999999998 899999999999886 789998 58999999999
Q ss_pred HhHHHhCCCCc-----------cchHHHhcCCCCCHHHHHHHHHHHhCCe-eecc-ChhHHHHHHHHhcccCCcchHHHH
Q psy8564 75 LVFFKYNGIFP-----------KNFISLINLPGIGQSTASAIRVFAYGKR-NAIL-DGNVKRILIRVLGINCSLNIKFIE 141 (341)
Q Consensus 75 ~i~~~~~g~~p-----------~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~v-D~~v~Rvl~Rl~~~~~~~~~~~~~ 141 (341)
.+.+ |.+| +.+++|++|||||+|||++|++|++|++ +++| |+||+|+++|+++++..++.
T Consensus 128 ~~~~---g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D~~v~r~~~rl~~~~~~~~~---- 200 (232)
T 4b21_A 128 AALN---KQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQT---- 200 (232)
T ss_dssp HHHT---TCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSSCCCH----
T ss_pred HHHh---CCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHHhCCCCCCCH----
Confidence 9987 4443 4689999999999999999999999997 6777 99999999999998765554
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHhh
Q psy8564 142 KKLWRYAIDLLPKKNIEIYTQGLMDFGS 169 (341)
Q Consensus 142 ~~l~~~~~~~~p~~~~~~~~~~l~~~G~ 169 (341)
+.+.++++.|-|.. +...+.|+...+
T Consensus 201 ~~~~~~~e~w~P~r--s~A~~yLw~~~~ 226 (232)
T 4b21_A 201 EEVEKLTKPCKPYR--TIAAWYLWQIPK 226 (232)
T ss_dssp HHHHHHTGGGTTCH--HHHHHHHHTGGG
T ss_pred HHHHHHHHHccCHH--HHHHHHHHHcCc
Confidence 45666788888774 444444554433
No 10
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.97 E-value=4.1e-31 Score=233.37 Aligned_cols=153 Identities=15% Similarity=0.109 Sum_probs=128.5
Q ss_pred CCCCCCCChHHHHHHHHHhhhcChhhHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhhcC--cH-HHHHHHHHHHHHhH-
Q psy8564 2 LPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLG--YY-SRARNLHICAKLVF- 77 (341)
Q Consensus 2 ~pwr~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~~~~~~l~~~l~~~G--~~-~rA~~i~~~a~~i~- 77 (341)
.||+...|||++||++||+|||+++++.+++.+| +++|+.+++++|.++|+++| || +||++|+++|+.+.
T Consensus 25 ~~~~~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~ 98 (207)
T 3fhg_A 25 NNLSNEEVWFRELTLCLLTANSSFISAYQALNCL------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYG 98 (207)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTT
T ss_pred ccCCCcCCHHHHHHHHHHcCCCCHHHHHHHHHHH------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999 58999999999999999666 88 59999999999553
Q ss_pred ------HHhCCCCc-cchHHHhcCCCCCHHHHHHHHHH-HhCCeeeccChhHHHHHHHHhcccCCcchHHHHHHHHHHHH
Q psy8564 78 ------FKYNGIFP-KNFISLINLPGIGQSTASAIRVF-AYGKRNAILDGNVKRILIRVLGINCSLNIKFIEKKLWRYAI 149 (341)
Q Consensus 78 ------~~~~g~~p-~~~~~L~~l~GIG~~tA~~il~~-~~~~~~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~ 149 (341)
+.++|..| +++++|++|||||+|||++||+| ++ .+.++||+|+.|+++|++.++....
T Consensus 99 ~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~-~~~~~vD~~v~Ri~~rlg~~~~~~~------------- 164 (207)
T 3fhg_A 99 RLKEEIKPLADEDQQLARERLLNIKGIGMQEASHFLRNVGY-FDLAIIDRHIIDFMRRIGAIGETNV------------- 164 (207)
T ss_dssp THHHHHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHTTC-CSSCCCCHHHHHHHHHTTSSCCCCC-------------
T ss_pred HhhhhHHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CCcceecHHHHHHHHHcCCCCcccc-------------
Confidence 34455566 78999999999999999999998 56 7899999999999999977654211
Q ss_pred hhCCCCCHHHHHHHHHHHhhhhccc
Q psy8564 150 DLLPKKNIEIYTQGLMDFGSIICKK 174 (341)
Q Consensus 150 ~~~p~~~~~~~~~~l~~~G~~~C~~ 174 (341)
+.++++.+.++|..|.+||+.+|.+
T Consensus 165 k~~~~k~y~~~~~~l~~~~~~~~~~ 189 (207)
T 3fhg_A 165 KQLSKSLYISFENILKSIASNLNMS 189 (207)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 1234456777788888888877754
No 11
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.97 E-value=7.5e-31 Score=231.40 Aligned_cols=148 Identities=18% Similarity=0.113 Sum_probs=131.2
Q ss_pred CCCChHHHHHHHHHhhhcChhhHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhhcC--cHH-HHHHHHHHHH--HhHHHh
Q psy8564 6 NTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLG--YYS-RARNLHICAK--LVFFKY 80 (341)
Q Consensus 6 ~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~~~~~~l~~~l~~~G--~~~-rA~~i~~~a~--~i~~~~ 80 (341)
..+|||++||++||||||+++++.+++.+|+ +.|+.+++++|.++|+++| ||+ ||++|+++++ .+.+.+
T Consensus 40 ~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~~~~l~~~~ 113 (214)
T 3fhf_A 40 SNEEWFKELCFCILTANFTAEGGIRIQKEIG------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIV 113 (214)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCHHHHH
T ss_pred CCCChHHHHHHHHHcCCCCHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHh
Confidence 4579999999999999999999999999996 7899999999999999999 985 9999999999 888888
Q ss_pred CC--CCccchHHHh-cCCCCCHHHHHHHHHHHhCCeeec-cChhHHHHHHHHhcccCCcchHHHHHHHHHHHHhhCCCCC
Q psy8564 81 NG--IFPKNFISLI-NLPGIGQSTASAIRVFAYGKRNAI-LDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKN 156 (341)
Q Consensus 81 ~g--~~p~~~~~L~-~l~GIG~~tA~~il~~~~~~~~~~-vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~~~p~~~ 156 (341)
+| ++|+++++|+ +|||||+|||++||+++ +.+.++ ||+||.|+++|++.++..+ +.+|++.
T Consensus 114 ~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~~~~~vVDthv~Ri~~RlG~~~~~~--------------k~lt~~~ 178 (214)
T 3fhf_A 114 ESFENEKVAREFLVRNIKGIGYKEASHFLRNV-GYDDVAIIDRHILRELYENNYIDEIP--------------KTLSRRK 178 (214)
T ss_dssp HHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TCCSCCCCCHHHHHHHHHTTSSSSCC--------------SSCCHHH
T ss_pred cccCCcHHHHHHHHHhCCCCCHHHHHHHHHHc-CCCCcccCcHHHHHHHHHcCCCCCCC--------------CcCCHHH
Confidence 77 7899999999 99999999999999998 556555 9999999999997776322 2356667
Q ss_pred HHHHHHHHHHHhhhhccc
Q psy8564 157 IEIYTQGLMDFGSIICKK 174 (341)
Q Consensus 157 ~~~~~~~l~~~G~~~C~~ 174 (341)
+.++|..|.+||+.+|.+
T Consensus 179 y~e~~~~l~~~g~~~g~~ 196 (214)
T 3fhf_A 179 YLEIENILRDIGEEVNLK 196 (214)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 899999999999999975
No 12
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=99.96 E-value=1.6e-29 Score=227.03 Aligned_cols=162 Identities=15% Similarity=0.056 Sum_probs=137.4
Q ss_pred CCCCCCCChHHHHHHHHHhhhcChhhHHHHHHHHHHhC----CCHHHHHhCCHHHHHHHHhhcCcHH-HHHHHHHHHHHh
Q psy8564 2 LPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKF----PNIMSLAQAKLENVMELWSGLGYYS-RARNLHICAKLV 76 (341)
Q Consensus 2 ~pwr~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~----pt~~~la~~~~~~l~~~l~~~G~~~-rA~~i~~~a~~i 76 (341)
++|+...|||++||++||+|||+++++.+++.+|+++| |||++|+++++++| +++||++ ||++|+++|+.+
T Consensus 43 ~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~L----r~~G~~~~KA~~I~~~A~~i 118 (233)
T 2h56_A 43 VQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEAL----RQAGVSKRKIEYIRHVCEHV 118 (233)
T ss_dssp EEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHH----HHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999974 69999999999887 8899995 999999999999
Q ss_pred HHHh-CCC-C---c--cchHHHhcCCCCCHHHHHHHHHHHhCCe-eeccChhHHHHHHHHh-cccCCcchHHHHHHHHHH
Q psy8564 77 FFKY-NGI-F---P--KNFISLINLPGIGQSTASAIRVFAYGKR-NAILDGNVKRILIRVL-GINCSLNIKFIEKKLWRY 147 (341)
Q Consensus 77 ~~~~-~g~-~---p--~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~vD~~v~Rvl~Rl~-~~~~~~~~~~~~~~l~~~ 147 (341)
.+++ +++ + | +++++|++|||||+|||++||+|++|++ +++||.|+.|+..|++ +.+..+++ +.++++
T Consensus 119 ~~~~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvdd~~~r~~~~~~~~~~~~~~~----~~~~~~ 194 (233)
T 2h56_A 119 ESGRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGNGEGDGK----KLLIYH 194 (233)
T ss_dssp HTTSSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTCHHHHHHHHHHHSSSCSCHH----HHHHHH
T ss_pred HhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCchHHHHHHHHHhccCCCCCCH----HHHHHH
Confidence 9865 332 2 6 6799999999999999999999999998 8999888888877764 43333333 456677
Q ss_pred HHhhCCCCCHHHHHHHHHHHhhhh
Q psy8564 148 AIDLLPKKNIEIYTQGLMDFGSII 171 (341)
Q Consensus 148 ~~~~~p~~~~~~~~~~l~~~G~~~ 171 (341)
++.+.|...+..++.+.++.+..-
T Consensus 195 ~e~~~P~~~~a~~~lw~~~~~~~~ 218 (233)
T 2h56_A 195 GKAWAPYETVACLYLWKAAGTFAE 218 (233)
T ss_dssp HGGGTTCHHHHHHHHHHHHTHHHH
T ss_pred HHHcCcHHHHHHHHHHhccccccc
Confidence 889999988888888888776643
No 13
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.96 E-value=1.3e-29 Score=224.53 Aligned_cols=156 Identities=20% Similarity=0.094 Sum_probs=133.4
Q ss_pred CCCCCCChHHHHHHHHHhhhcChhhHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhhcC--cH-HHHHHHHHHHHHh---
Q psy8564 3 PWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLG--YY-SRARNLHICAKLV--- 76 (341)
Q Consensus 3 pwr~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~~~~~~l~~~l~~~G--~~-~rA~~i~~~a~~i--- 76 (341)
||+...|||++||++||+|||+++++.+++.+| |+.|+.+++++|.++|+++| || +||+||+++|+.+
T Consensus 43 ~~~~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L------p~~l~~~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~ig~l 116 (219)
T 3n0u_A 43 EEGTEEDLFCELSFCVLTANWSAEGGIRAQKEI------GKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLLGKL 116 (219)
T ss_dssp HHCCHHHHHHHHHHHHHTTTSCHHHHHHHHHHH------TTHHHHCCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGTTTH
T ss_pred cCCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH------HHHHHcCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999 68899999999999999999 88 5999999999986
Q ss_pred HHHhCCCCccchHHHh-cCCCCCHHHHHHHHHHHhCC-eeeccChhHHHHHHHHhcccCC---c---chHHHHHHHHHHH
Q psy8564 77 FFKYNGIFPKNFISLI-NLPGIGQSTASAIRVFAYGK-RNAILDGNVKRILIRVLGINCS---L---NIKFIEKKLWRYA 148 (341)
Q Consensus 77 ~~~~~g~~p~~~~~L~-~l~GIG~~tA~~il~~~~~~-~~~~vD~~v~Rvl~Rl~~~~~~---~---~~~~~~~~l~~~~ 148 (341)
.+.++++.|+++++|+ ++||||+|||++||++ +|. +.++||+||.|++.|++.++.. . ....+++.+.+++
T Consensus 117 ~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~-~g~~~~~~VDthv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~~~a 195 (219)
T 3n0u_A 117 KNLVKGDPFQSREFLVRNAKGIGWKEASHFLRN-TGVEDLAILDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKVA 195 (219)
T ss_dssp HHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHT-TTCCSCCCCCHHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHH-cCCCCeeeecHHHHHHHHHcCCCCcCcCcCCHHHHHHHHHHHHHHH
Confidence 6667889999999999 9999999999999999 776 8999999999999999877652 1 2245667777777
Q ss_pred HhhCCCCCHHHHHHHHHHH
Q psy8564 149 IDLLPKKNIEIYTQGLMDF 167 (341)
Q Consensus 149 ~~~~p~~~~~~~~~~l~~~ 167 (341)
+.+-. ..+.+...|+..
T Consensus 196 ~~~g~--~~~~ldl~lW~~ 212 (219)
T 3n0u_A 196 EAFGE--SPGKFDLYLWYL 212 (219)
T ss_dssp HHHTC--CHHHHHHHHHHH
T ss_pred HHHCC--CHHHHHHHHHHH
Confidence 66533 356666665543
No 14
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=99.95 E-value=1.7e-28 Score=219.04 Aligned_cols=147 Identities=17% Similarity=0.162 Sum_probs=125.6
Q ss_pred CCCCCCChHHHHHHHHHhhhcChhhHHHHHHHHHHhC--CCHHHHHhCCHHHHHHHHhhcCcH-HHHHHHHHHHHHhHHH
Q psy8564 3 PWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKF--PNIMSLAQAKLENVMELWSGLGYY-SRARNLHICAKLVFFK 79 (341)
Q Consensus 3 pwr~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~--pt~~~la~~~~~~l~~~l~~~G~~-~rA~~i~~~a~~i~~~ 79 (341)
+|+...|||++||++||+|||+++++..++.+|.++| |||++|+++++++| +++||+ +||++|+++|+.+.+.
T Consensus 54 ~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~L----r~~G~~~~KA~~i~~lA~~~~~g 129 (225)
T 2yg9_A 54 VLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDL----RGVGLSWAKVRTVQAAAAAAVSG 129 (225)
T ss_dssp CCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHH----HHTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHH----HHCCCcHHHHHHHHHHHHHHHhC
Confidence 6889999999999999999999999999999999999 99999999999886 789998 5999999999999872
Q ss_pred hCC-----CCccc--hHHHhcCCCCCHHHHHHHHHHHhCCe-eecc-ChhHHHHHHHHhcccCCcchHHHHHHHHHHHHh
Q psy8564 80 YNG-----IFPKN--FISLINLPGIGQSTASAIRVFAYGKR-NAIL-DGNVKRILIRVLGINCSLNIKFIEKKLWRYAID 150 (341)
Q Consensus 80 ~~g-----~~p~~--~~~L~~l~GIG~~tA~~il~~~~~~~-~~~v-D~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~ 150 (341)
... ..|.+ +++|++|||||+|||++||+|++|++ .++| |+||+|+++|++ . . +.+.++++.
T Consensus 130 ~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fpv~D~~v~r~~~~l~--~----~----~~~~~~~e~ 199 (225)
T 2yg9_A 130 QIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFALARPDVFSSGDLALRQGVERLY--P----G----EDWRDVTAR 199 (225)
T ss_dssp SSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCCTTCHHHHHHHHHHS--T----T----SCHHHHHHH
T ss_pred CcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHhC--C----H----HHHHHHHHH
Confidence 110 11433 89999999999999999999999997 7787 999999999997 1 1 335566788
Q ss_pred hCCCCCHHHHHHH
Q psy8564 151 LLPKKNIEIYTQG 163 (341)
Q Consensus 151 ~~p~~~~~~~~~~ 163 (341)
|.|...+..+|.+
T Consensus 200 ~~P~r~~a~~~Lw 212 (225)
T 2yg9_A 200 WAPYRSLASRYLW 212 (225)
T ss_dssp HTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 8888666666555
No 15
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=99.95 E-value=5.4e-28 Score=216.13 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=125.5
Q ss_pred CC-ChHHHHHHHHHhhhcChhhHHHHHHHHHHhC------CCHHHHHhCCHHHHHHHHhhcCcHH-HHHHHHHHHHHhHH
Q psy8564 7 TK-NTYYIWLSEIMLQQTQVNTVIPYYQRFLKKF------PNIMSLAQAKLENVMELWSGLGYYS-RARNLHICAKLVFF 78 (341)
Q Consensus 7 ~~-~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~------pt~~~la~~~~~~l~~~l~~~G~~~-rA~~i~~~a~~i~~ 78 (341)
.. |||++||++||+|||+++++..++.+| ++| |||++|+++++++| +++||++ ||++|+++|+.+.+
T Consensus 46 ~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~L----r~~G~~~rKa~~i~~~A~~~~~ 120 (228)
T 3s6i_A 46 EKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIM----RACGFSARKIDSLKSIAEATIS 120 (228)
T ss_dssp TTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHH----HHHTCCHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHHHHc
Confidence 34 999999999999999999999999999 775 99999999999886 7899985 89999999999985
Q ss_pred HhCCCCcc-----------chHHHhcCCCCCHHHHHHHHHHHhCCe-eecc-ChhHHHHHHHHhcccCCcchHHHHHHHH
Q psy8564 79 KYNGIFPK-----------NFISLINLPGIGQSTASAIRVFAYGKR-NAIL-DGNVKRILIRVLGINCSLNIKFIEKKLW 145 (341)
Q Consensus 79 ~~~g~~p~-----------~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~v-D~~v~Rvl~Rl~~~~~~~~~~~~~~~l~ 145 (341)
|.+|+ .+++|++|||||+|||++||+|++|++ +++| |.|++|+++++++++..++. +.+.
T Consensus 121 ---g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD~~v~r~~~~~~~~~~~~~~----~~~~ 193 (228)
T 3s6i_A 121 ---GLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIPTK----MYVL 193 (228)
T ss_dssp ---TSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSSCCCH----HHHH
T ss_pred ---CCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEecccHHHHHHHHHHhCCCCCCCH----HHHH
Confidence 66653 389999999999999999999999997 6777 57899999999998765554 4566
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHhh
Q psy8564 146 RYAIDLLPKKNIEIYTQGLMDFGS 169 (341)
Q Consensus 146 ~~~~~~~p~~~~~~~~~~l~~~G~ 169 (341)
++++.|.|.. +...+.|+..++
T Consensus 194 ~~~e~w~P~r--~~A~~yLw~~~~ 215 (228)
T 3s6i_A 194 KHSEICAPFR--TAAAWYLWKTSK 215 (228)
T ss_dssp HHHGGGTTCH--HHHHHHHHHGGG
T ss_pred HHHHHhCCHH--HHHHHHHHHhCc
Confidence 6788888874 444445555544
No 16
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=99.95 E-value=1.9e-27 Score=220.01 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=130.0
Q ss_pred CCChHHHHHHHHHhhhcChhhHHHHHHHHHHh--------------CCCHHHHHhCCHHHHHHHHhhcCcHHHHHHHHHH
Q psy8564 7 TKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKK--------------FPNIMSLAQAKLENVMELWSGLGYYSRARNLHIC 72 (341)
Q Consensus 7 ~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~--------------~pt~~~la~~~~~~l~~~l~~~G~~~rA~~i~~~ 72 (341)
..|||+++|++||+|||+++++.+++.+|.++ ||||++|+++++++|.+ .++|| ||++|+++
T Consensus 112 ~~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L~~--~g~g~--Ra~~I~~~ 187 (290)
T 3i0w_A 112 RQDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEE--CTAGF--RAKYLKDT 187 (290)
T ss_dssp CCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHHH--TTCGG--GHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHHHH--cCCch--HHHHHHHH
Confidence 48999999999999999999999999999986 79999999999999876 35665 99999999
Q ss_pred HHHhHHHhC-------CCCccchHHHhcCCCCCHHHHHHHHHHHhCCe-eeccChhHHHHHHHHhcccCCcchHHHHHHH
Q psy8564 73 AKLVFFKYN-------GIFPKNFISLINLPGIGQSTASAIRVFAYGKR-NAILDGNVKRILIRVLGINCSLNIKFIEKKL 144 (341)
Q Consensus 73 a~~i~~~~~-------g~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l 144 (341)
|+.+.+++. .+.++.+++|++|||||+|||++|++|++|++ ++|||+||+|++.|+++.+ .+++ +.+
T Consensus 188 A~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpvD~~v~r~~~rl~~~~-~~~~----~~i 262 (290)
T 3i0w_A 188 VDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLYVAP-DVSL----KKI 262 (290)
T ss_dssp HHHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHHHHHHHTSCT-TCCH----HHH
T ss_pred HHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcceecHHHHHHHHHhcCCC-CCCH----HHH
Confidence 999987431 24567899999999999999999999999996 8889999999999998765 3344 345
Q ss_pred HHHH-HhhCCCCCHHHHHHHHHHHhhh
Q psy8564 145 WRYA-IDLLPKKNIEIYTQGLMDFGSI 170 (341)
Q Consensus 145 ~~~~-~~~~p~~~~~~~~~~l~~~G~~ 170 (341)
.+++ +.+-| ..+..++.|+.+|+.
T Consensus 263 ~~~~~~~~~p--~~~~A~~~Lw~~~R~ 287 (290)
T 3i0w_A 263 RDFGREKFGS--LSGFAQQYLFYYARE 287 (290)
T ss_dssp HHHHHHHHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHhhcch--HHHHHHHHHHHhhhh
Confidence 5555 44443 578899999999986
No 17
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=99.94 E-value=1.6e-26 Score=219.37 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=124.7
Q ss_pred CCChHHHHHHHHHhhhcChhhHHHHHHHHHH---------------hCCCHHHHHhCCHHHHHHHHhhcCcHHHHHHHHH
Q psy8564 7 TKNTYYIWLSEIMLQQTQVNTVIPYYQRFLK---------------KFPNIMSLAQAKLENVMELWSGLGYYSRARNLHI 71 (341)
Q Consensus 7 ~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~---------------~~pt~~~la~~~~~~l~~~l~~~G~~~rA~~i~~ 71 (341)
..|||++||++||+|||++.++..++.+|++ .||||++|++++.++ .|+.+||..||++|++
T Consensus 149 ~~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~ee---~Lr~~Gl~~RA~~I~~ 225 (360)
T 2xhi_A 149 RQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEA---HLRKLGLGYRARYVSA 225 (360)
T ss_dssp CCCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHH---HHHHTTCTTHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHHH---HHHHcCCcHHHHHHHH
Confidence 3799999999999999999999999999998 479999999997643 4577888669999999
Q ss_pred HHHHhHHHhCCC--------Cc--cchHHHhcCCCCCHHHHHHHHHHHhCCe-eeccChhHHHHHHHHhcccCCc----c
Q psy8564 72 CAKLVFFKYNGI--------FP--KNFISLINLPGIGQSTASAIRVFAYGKR-NAILDGNVKRILIRVLGINCSL----N 136 (341)
Q Consensus 72 ~a~~i~~~~~g~--------~p--~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~vD~~v~Rvl~Rl~~~~~~~----~ 136 (341)
+|+.+.++|+|. +| +.+++|++|||||+|||++|++|++|++ +++||+||.|++.|++|+.... +
T Consensus 226 ~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpvDthV~Ri~~r~~gl~~~~~~~k~ 305 (360)
T 2xhi_A 226 SARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMALDKPQAVPVNVHMWHIAQRDYSWHPTTSQAKG 305 (360)
T ss_dssp HHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCSHHHHHHHHHHHCCCCSSCSCSS
T ss_pred HHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEecHHHHHHHHHHhCcccccccccC
Confidence 999999988875 45 6799999999999999999999999998 8899999999999988875321 1
Q ss_pred -hHHHHHHHHH-HHHhhCCCCCHHHHHHHHHH
Q psy8564 137 -IKFIEKKLWR-YAIDLLPKKNIEIYTQGLMD 166 (341)
Q Consensus 137 -~~~~~~~l~~-~~~~~~p~~~~~~~~~~l~~ 166 (341)
+...++.+.+ +.+.|-|.. +..++.|+.
T Consensus 306 ~~~~~~~~l~~~~~e~w~p~~--~~a~~yLw~ 335 (360)
T 2xhi_A 306 PSPQTNKELGNFFRSLWGPYA--GWAQAVLFS 335 (360)
T ss_dssp CCHHHHHHHHHHHHHHHCTTH--HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 1334444433 345565553 444444443
No 18
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=99.93 E-value=5.3e-26 Score=211.16 Aligned_cols=152 Identities=16% Similarity=0.086 Sum_probs=125.2
Q ss_pred CCCCC--CCChHHHHHHHHHhhhcChhhHHHHHHHHHHh--------------CCCHHHHHhCCHHHHHHHHhhcCcHH-
Q psy8564 2 LPWQN--TKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKK--------------FPNIMSLAQAKLENVMELWSGLGYYS- 64 (341)
Q Consensus 2 ~pwr~--~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~--------------~pt~~~la~~~~~~l~~~l~~~G~~~- 64 (341)
++|.. ..|||+++|++||+|||+++++.+++.+|.++ ||||++|+++++++| +++||++
T Consensus 108 lr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~~L----r~~G~~~r 183 (295)
T 2jhn_A 108 FGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEGL----RECGLSRR 183 (295)
T ss_dssp CCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHH----HHTTCCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHHHH----HHcCCCHH
Confidence 45666 89999999999999999999999999999988 899999999999876 7899985
Q ss_pred HHHHHHHHHHHhHHHhCC--CCcc--chHHHhcCCCCCHHHHHHHHHHHhCCe-eecc-ChhHHHHHHHHhcccC-Ccch
Q psy8564 65 RARNLHICAKLVFFKYNG--IFPK--NFISLINLPGIGQSTASAIRVFAYGKR-NAIL-DGNVKRILIRVLGINC-SLNI 137 (341)
Q Consensus 65 rA~~i~~~a~~i~~~~~g--~~p~--~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~v-D~~v~Rvl~Rl~~~~~-~~~~ 137 (341)
||++|+++|+. ..+++ ..|. .+++|++|||||+|||++|++|++| + +++| |.|++|++.|++++.. .+++
T Consensus 184 Ka~~i~~~A~~--g~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg-~d~fpvdD~~~rr~~~~~~g~~~~~~~~ 260 (295)
T 2jhn_A 184 KAELIVEIAKE--ENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG-KNVFPADDLGVRRAVSRLYFNGEIQSAE 260 (295)
T ss_dssp HHHHHHHHHTC--SSGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC-CCCCCTTCHHHHHHHHHHHSTTCCCCHH
T ss_pred HHHHHHHHHHC--CCHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC-CCcccchHHHHHHHHHHHhcCCCCCCCH
Confidence 89999999988 33332 2343 4899999999999999999999999 7 7787 6777889999988754 3333
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHH
Q psy8564 138 KFIEKKLWRYAIDLLPKKNIEIYTQGL 164 (341)
Q Consensus 138 ~~~~~~l~~~~~~~~p~~~~~~~~~~l 164 (341)
+.+.++++.+.|...+..+|.+.
T Consensus 261 ----~~~~~~~e~~~p~r~~a~~~Lw~ 283 (295)
T 2jhn_A 261 ----KVREIARERFGRFARDILFYLFL 283 (295)
T ss_dssp ----HHHHHHHHHTGGGHHHHHHHHHH
T ss_pred ----HHHHHHHHhcccHHHHHHHHHHH
Confidence 45666788888876665555554
No 19
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=99.92 E-value=7e-25 Score=202.46 Aligned_cols=146 Identities=20% Similarity=0.225 Sum_probs=122.6
Q ss_pred CCCChHHHHHHHHHhhhcChhhHHHHHHHHHHh-------------CCCHHHHHhCCHHHHHHHHhhcCcH-HHHHHHHH
Q psy8564 6 NTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKK-------------FPNIMSLAQAKLENVMELWSGLGYY-SRARNLHI 71 (341)
Q Consensus 6 ~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~-------------~pt~~~la~~~~~~l~~~l~~~G~~-~rA~~i~~ 71 (341)
...|||+++|++||+|||+++++.+++.+|.++ ||||++|+++++++| +++||+ +||++|++
T Consensus 109 ~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~L----r~~G~~~~ra~~i~~ 184 (282)
T 1mpg_A 109 GCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKRAEALIH 184 (282)
T ss_dssp CCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHH
Confidence 568999999999999999999999999999753 789999999999887 789998 69999999
Q ss_pred HHHHhHHH-hCCCCc----cchHHHhcCCCCCHHHHHHHHHHHhCCe-eeccChhHHHHHHHHhcccCCcchHHHHHHHH
Q psy8564 72 CAKLVFFK-YNGIFP----KNFISLINLPGIGQSTASAIRVFAYGKR-NAILDGNVKRILIRVLGINCSLNIKFIEKKLW 145 (341)
Q Consensus 72 ~a~~i~~~-~~g~~p----~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~ 145 (341)
+|+.+.++ ++++.+ +.+++|++|||||+|||++|++|++|++ .+++|.|+.| +++ ...+. +.+.
T Consensus 185 ~A~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~pvdd~~~r--~~l----~~~~~----~~~~ 254 (282)
T 1mpg_A 185 LANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIK--QRF----PGMTP----AQIR 254 (282)
T ss_dssp HHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHH--HHS----TTCCH----HHHH
T ss_pred HHHHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCccccHHHH--HHh----ccCCH----HHHH
Confidence 99999986 666554 3489999999999999999999999998 8888777766 444 12333 4456
Q ss_pred HHHHhhCCCCCHHHHHHHHH
Q psy8564 146 RYAIDLLPKKNIEIYTQGLM 165 (341)
Q Consensus 146 ~~~~~~~p~~~~~~~~~~l~ 165 (341)
++++.+.|...+..+|.+..
T Consensus 255 ~~~~~~~P~r~~a~~~lw~~ 274 (282)
T 1mpg_A 255 RYAERWKPWRSYALLHIWYT 274 (282)
T ss_dssp HHHGGGTTCHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 67788999888887777653
No 20
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.92 E-value=5.8e-25 Score=184.85 Aligned_cols=135 Identities=14% Similarity=0.244 Sum_probs=112.0
Q ss_pred ccccccccc-cCcccceeEEEEEEEe----CCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhH-HHHHH
Q psy8564 195 KINNFLIKN-KKNIKNCSIIMFIVID----DDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLI-ELEIK 266 (341)
Q Consensus 195 ~~~~~p~~~-kk~~~~~~~~~~ii~~----~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~-~a~~r 266 (341)
.+..||+|+ |++++.+..+++|+.+ +|+|||.||+.+|+|+|+|+||| +|.||++ . +|+.|
T Consensus 3 ~~~~~Pvk~~k~~~~~~~~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~-----------~~~a~~R 71 (155)
T 1x51_A 3 SGSSGPRKASRKPPREESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQL-----------QRKALLQ 71 (155)
T ss_dssp CSCSCTTSSSCSCTTEEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHH-----------HHHHHHH
T ss_pred chhhCCCcCCCCCCCeEEEEEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCH-----------HHHHHHH
Confidence 567899999 5555566565555543 48999999999999999999999 8999976 6 89999
Q ss_pred HHHHhcC-Cc-ccccccCcEEEEeeceEEEEEEEEEEecc-cccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 267 KFISSFG-FI-KNYLILPIISHKLTHLQFKIVPCHIFLKK-CFLKENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 267 E~~ee~g-~~-~~~~~~~~~~h~~~h~~~~l~~~~~~~~~-~~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
|+.||+| +. .....++.+.|.|+|+++++++|.|...+ .+...++.+++|++++++.+++||++++++++.+.+
T Consensus 72 El~EE~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 148 (155)
T 1x51_A 72 ELQRWAGPLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQTPVTTVPPGARWLTQEEFHTAAVSTAMKKVFRVYQG 148 (155)
T ss_dssp HHHHHSCCCCSTTCEECCCBCCBCSSCEEEEEEEEEECSSCCCCCCCCTTEEEEEHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCcceeeeeecceEEEecCCccEEEEEEEEEEcCCCCCCCCCCccEEccHHHhhhcCCCHHHHHHHHHHHh
Confidence 9999999 87 66677888999999999999999998754 222223478999999999999999999999998754
No 21
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.89 E-value=6.1e-23 Score=171.19 Aligned_cols=134 Identities=17% Similarity=0.207 Sum_probs=105.5
Q ss_pred cccccccc-cCccc-----ceeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHH
Q psy8564 196 INNFLIKN-KKNIK-----NCSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKK 267 (341)
Q Consensus 196 ~~~~p~~~-kk~~~-----~~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE 267 (341)
+..+|+|. ||..+ ...++++|+.++|+|||.||+.++.++|+|+||| +|.||++ .+|+.||
T Consensus 2 ~~~lP~k~~kk~~~~~~~~~~~~~~~i~~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~-----------~~aa~RE 70 (153)
T 3ees_A 2 TDDSAVESKQKKSKIRKGHWIPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETP-----------EEALARE 70 (153)
T ss_dssp ------------------CEEEEEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCH-----------HHHHHHH
T ss_pred CCCccccCccccccccCCceEEEEEEEEEECCEEEEEEeCCCCCCCCeEECCceeeCCCCCH-----------HHHHHHH
Confidence 45788877 44433 3456677778899999999999999999999999 9999988 9999999
Q ss_pred HHHhcCCc-ccccccCcEEEEeeceEEEEEEEEEEecc-cccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 268 FISSFGFI-KNYLILPIISHKLTHLQFKIVPCHIFLKK-CFLKENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 268 ~~ee~g~~-~~~~~~~~~~h~~~h~~~~l~~~~~~~~~-~~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
+.||+|+. .....++.+.|.|+|.++.+++|.+...+ .....++.++.|++++++.+++++++++++++.+.+
T Consensus 71 ~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 145 (153)
T 3ees_A 71 LNEELGIEAEVGELKLACTHSYGDVGILILFYEILYWKGEPRAKHHMMLEWIHPEELKHRNIPEANRKILHKIYK 145 (153)
T ss_dssp HHHHHSCEEECCCEEEEEEEEETTEEEEEEEEEECEEESCCCCSSSSEEEEECGGGGGGSCCCHHHHTTHHHHHH
T ss_pred HHHHHCCccccCceEEEEEEecCCCeEEEEEEEEEECCCCcCCCccceEEEecHHHhhhCCCCcchHHHHHHHHH
Confidence 99999999 77778888999999999999999998754 322334478999999999999999999999998754
No 22
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.86 E-value=1.4e-21 Score=164.54 Aligned_cols=132 Identities=15% Similarity=0.158 Sum_probs=103.4
Q ss_pred cccccc-cCcccceeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCC
Q psy8564 198 NFLIKN-KKNIKNCSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGF 274 (341)
Q Consensus 198 ~~p~~~-kk~~~~~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~ 274 (341)
.=|++. ++.++...++++|+.++|+|||.||+.++.++|+|+||| +|.+|++ .+|+.||+.||+|+
T Consensus 17 ~gP~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~-----------~~aa~RE~~EEtGl 85 (158)
T 3hhj_A 17 QGPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETP-----------EASLIRELEEELGV 85 (158)
T ss_dssp ----------CEEEEEEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCH-----------HHHHHHHHHHHHCC
T ss_pred CCCccCCCCCceEEEEEEEEEeCCCEEEEEEeCCCCCCCCEEECCceeecCCCCH-----------HHHHHHHHHHHhCc
Confidence 345555 333444445566666789999999998999999999999 9999988 99999999999999
Q ss_pred c-ccc--cccCcEEEEeeceEEEEEEEEEEecc-cccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 275 I-KNY--LILPIISHKLTHLQFKIVPCHIFLKK-CFLKENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 275 ~-~~~--~~~~~~~h~~~h~~~~l~~~~~~~~~-~~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
. ... ..+..+.|.|+|.++.+++|.|...+ .....+..+++|++++++.+++++++++++++.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~il~~~~~ 155 (158)
T 3hhj_A 86 HVQADNLFPLTFASHGYETFHLLMPLYFCSHYKGVAQGREGQNLKWIFINDLDKYPMPEADKPLVQVLKN 155 (158)
T ss_dssp BCCGGGCEEEEEEEEECSSCEEEEEEEEESCCBSCCCCTTSCEEEEEEGGGGGGSCCCTTTHHHHHHHHH
T ss_pred EeecceEEEEEEEeeccCCcEEEEEEEEEEECCCccCCccccceEEEcHHHHhhCCCCcchHHHHHHHHH
Confidence 8 544 34677889999999999999998654 222333478999999999999999999999998865
No 23
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.85 E-value=3.7e-21 Score=158.04 Aligned_cols=123 Identities=11% Similarity=0.165 Sum_probs=105.1
Q ss_pred ccceeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCc
Q psy8564 207 IKNCSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPI 283 (341)
Q Consensus 207 ~~~~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~ 283 (341)
++.+.++++|+.++|+|||.||+.++.++|+|+||| +|.+|++ .+|+.||+.||+|+. .....++.
T Consensus 6 ~~~~~~~~~ii~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~-----------~~aa~RE~~EE~Gl~~~~~~~~~~ 74 (140)
T 2rrk_A 6 MKMIEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQ-----------RQALVRELREELGIEATVGEYVAS 74 (140)
T ss_dssp SCEEEEEEEEEEETTEEEEEECCSSCSCCCCEECCEEECCTTSCH-----------HHHHHHHHHHHSCEEEECCEEEEE
T ss_pred CccceEEEEEEEcCCEEEEEEcCCCCCCCCEEECCceecCCCCCH-----------HHHHHHHHHHHHCCeeecccEEEE
Confidence 344556667778899999999998899999999999 9999988 899999999999999 77778889
Q ss_pred EEEEeeceEEEEEEEEEEecc-cccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 284 ISHKLTHLQFKIVPCHIFLKK-CFLKENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 284 ~~h~~~h~~~~l~~~~~~~~~-~~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
+.|.|+|+++.+++|.|...+ .....+..++.|++++++.+++++++++++++.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 132 (140)
T 2rrk_A 75 HQREVSGRIIHLHAWHVPDFHGTLQAHEHQALVWCSPEEALQYPLAPADIPLLEAFMA 132 (140)
T ss_dssp EEEEETTEEEEEEEEEESEEEECCCCSSCSCEEEECHHHHTTSCCCTTHHHHHHHHHH
T ss_pred EEEecCCcEEEEEEEEEEeeCCCcCCCccceeEEeCHHHHhhCCCChhHHHHHHHHHH
Confidence 999999999999999988654 222233478999999999999999999999988753
No 24
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.84 E-value=1.6e-21 Score=157.86 Aligned_cols=121 Identities=7% Similarity=0.139 Sum_probs=103.6
Q ss_pred ceeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEE
Q psy8564 209 NCSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIIS 285 (341)
Q Consensus 209 ~~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~ 285 (341)
...++++|+.++|+|||.||+.++.++|+|+||| +|.||++ .+|+.||+.||+|+. .....++.+.
T Consensus 4 ~~~~~~ii~~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~-----------~~aa~RE~~EE~G~~~~~~~~~~~~~ 72 (129)
T 1mut_A 4 LQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETP-----------EQAVVRELQEEVGITPQHFSLFEKLE 72 (129)
T ss_dssp EECCCEECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSST-----------THHHHHHHHTTTCCSSCEECCCCCCB
T ss_pred EEEEEEEEEecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCH-----------HHHHHHHHHHHhCCccccceEEEEEE
Confidence 3445566667889999999998889999999999 9999988 899999999999999 7677788889
Q ss_pred EEeeceEEEEEEEEEEecc-cccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 286 HKLTHLQFKIVPCHIFLKK-CFLKENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 286 h~~~h~~~~l~~~~~~~~~-~~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
|.|+|.++.+++|.+...+ .+...+..++.|++++++.+++++++++++++++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~l~~ 128 (129)
T 1mut_A 73 YEFPDRHITLWFWLVERWEGEPWGKEGQPGEWMSLVGLNADDFPPANEPVIAKLKR 128 (129)
T ss_dssp CCCSSCEEECCCEEEEECSSCCCCCSSCCCEEEESSSCCTTTSCTTCHHHHHHHTC
T ss_pred EecCCceEEEEEEEEEccCCccCCcccceeEEeCHHHcccccCCchhHHHHHHHhh
Confidence 9999999999999998654 222233468999999999999999999999998864
No 25
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.84 E-value=3.5e-21 Score=159.11 Aligned_cols=121 Identities=12% Similarity=0.173 Sum_probs=101.5
Q ss_pred ceeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccc--cccCc
Q psy8564 209 NCSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNY--LILPI 283 (341)
Q Consensus 209 ~~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~--~~~~~ 283 (341)
...++++|+..+|+|||.||+.++.++|+|+||| +|.||++ .+|+.||+.||+|+. ... ..+..
T Consensus 8 ~~~~~~vi~~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~-----------~~aa~RE~~EE~Gl~~~~~~~~~~~~ 76 (144)
T 3r03_A 8 LLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETP-----------EAALVRELAEELGVDTRASCLAPLAF 76 (144)
T ss_dssp EEEEEEEEBCTTSCEEEEECCTTSSSTTCEECSEEECCTTCCH-----------HHHHHHHHHHHHCCBCCGGGCEEEEE
T ss_pred eEEEEEEEEcCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCH-----------HHHHHHHHHHHhCceeeccceEEEEe
Confidence 3344555556689999999998999999999999 9999988 999999999999998 544 45677
Q ss_pred EEEEeeceEEEEEEEEEEecc-cccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 284 ISHKLTHLQFKIVPCHIFLKK-CFLKENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 284 ~~h~~~h~~~~l~~~~~~~~~-~~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
+.|.++|.++.+++|.+...+ .+...+..+++|++++++.+++++++++++++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 134 (144)
T 3r03_A 77 ASHSYDTFHLLMPLYACRSWRGRATAREGQTLAWVRAERLREYPMPPADLPLIPILQD 134 (144)
T ss_dssp EEEECSSSEEEEEEEEECCCBSCCCCCSSCEEEEECGGGGGGSCCCTTTTTHHHHHHH
T ss_pred eeccCCCeEEEEEEEEEEecCCccCCCCcceEEEEeHHHhccCCCCcchHHHHHHHhC
Confidence 899999999999999998654 222333477999999999999999999999998864
No 26
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.83 E-value=6.9e-21 Score=157.00 Aligned_cols=120 Identities=8% Similarity=0.113 Sum_probs=98.1
Q ss_pred eeEEEEEEEeCCEEEEEEeCCCCc--ccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcE
Q psy8564 210 CSIIMFIVIDDDYVLFQKRSNKGI--WGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPII 284 (341)
Q Consensus 210 ~~~~~~ii~~~g~vLl~kR~~~g~--~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~ 284 (341)
..++++|+.++|+|||.||+.++. ++|+|+||| +|.||++ .+|+.||+.||+|++ .....+..+
T Consensus 6 ~~~v~~vi~~~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~-----------~~aa~REl~EE~Gl~~~~~~~~~~~ 74 (140)
T 3gwy_A 6 IEVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESL-----------QEALQREIMEEMDYVIEVGEKLLTV 74 (140)
T ss_dssp EEEEEEEEEETTEEEEEEC---------CCEECSEEECCTTCCH-----------HHHHHHHHHHHHCCCEEEEEEEEEE
T ss_pred EEEEEEEEEeCCEEEEEEecCCCCCCCCCeEECCCccCCCCCCH-----------HHHHHHHHHHhhCcEEEeceEEEEE
Confidence 445566666799999999998887 999999999 9999988 999999999999999 777888889
Q ss_pred EEEeeceEEEEEEEEEEecc-cccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 285 SHKLTHLQFKIVPCHIFLKK-CFLKENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 285 ~h~~~h~~~~l~~~~~~~~~-~~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
.|.|+|.++.+++|.+...+ .+...+..+++|++++++.+++++++++++++.+.+
T Consensus 75 ~~~~~~~~~~~~~f~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~ 131 (140)
T 3gwy_A 75 HHTYPDFEITMHAFLCHPVGQRYVLKEHIAAQWLSTREMAILDWAEADKPIVRKISE 131 (140)
T ss_dssp ECCCSSCCEEEEEEEEEECCSCCCCCSSCEEEEECHHHHTTSCBCGGGHHHHHHHHC
T ss_pred EEEeCCceEEEEEEEEEecCCcccccccceeEeccHHHHhhCCCCcccHHHHHHHHh
Confidence 99999999999999999765 222233477999999999999999999999998865
No 27
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.80 E-value=1.7e-19 Score=150.87 Aligned_cols=123 Identities=14% Similarity=0.116 Sum_probs=102.7
Q ss_pred ccceeEEEEEEE-eCCEEEEEEeCCC-Ccccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-cccccc
Q psy8564 207 IKNCSIIMFIVI-DDDYVLFQKRSNK-GIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLIL 281 (341)
Q Consensus 207 ~~~~~~~~~ii~-~~g~vLl~kR~~~-g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~ 281 (341)
++....+++++. .+|+|||.||+.. +.++|+|+||| +|.||++ .+|+.||+.||+|+. .....+
T Consensus 5 ~~~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~-----------~~aa~REl~EE~Gl~~~~~~~~ 73 (153)
T 3grn_A 5 KPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESL-----------KEGVAREVWEETGITMVPGDIA 73 (153)
T ss_dssp SCEEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCH-----------HHHHHHHHHHHHCCCCCCCSEE
T ss_pred CceEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCH-----------HHHHHhhhhhhhCcEeecceEE
Confidence 344455555554 5789999999876 89999999999 9999988 999999999999999 777788
Q ss_pred CcEEEEeeceEEEEEEEEEEecc-cc-cccCCCCceeeeCCCCCCCC-CCHHHHHHHHHhhc
Q psy8564 282 PIISHKLTHLQFKIVPCHIFLKK-CF-LKENKNNFIWYPIKKIKNSP-IPAPVRKILFQIIQ 340 (341)
Q Consensus 282 ~~~~h~~~h~~~~l~~~~~~~~~-~~-~~~~~~~~~W~~~~el~~~~-~~~a~~~il~~l~~ 340 (341)
+.+.|.|+|.++.+.+|.+...+ .. ...+..+++|++++++.+++ ++++++++++.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~l~~ 135 (153)
T 3grn_A 74 GQVNFELTEKKVIAIVFDGGYVVADVKLSYEHIEYSWVSLEKILGMETLPAYFRDFFERFDR 135 (153)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCCCCCCTTEEEEEEECHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred EEEEEecCCceEEEEEEEEEecCCcEecCCCcceEEEEEHHHhhhcccchHHHHHHHHHHhc
Confidence 89999999999999999988654 21 12233678999999999999 99999999998853
No 28
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.75 E-value=1.5e-18 Score=147.80 Aligned_cols=137 Identities=13% Similarity=0.039 Sum_probs=92.0
Q ss_pred cccCCCCCCCCCccccccccccCccccccccccCcccceeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccch
Q psy8564 172 CKKIKPKCKVCPLQLCCISYKTNKINNFLIKNKKNIKNCSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKI 249 (341)
Q Consensus 172 C~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~~~kk~~~~~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~ 249 (341)
|.+.+|.|..||....|.... ....+++|+.++|+|||.||..+ +|+|+||| +|.||++
T Consensus 1 ms~~~~~~~~~~~~~~~~~~~----------------~~~~v~~ii~~~~~vLL~~r~~~---~~~w~~PgG~ve~gEs~ 61 (171)
T 3id9_A 1 MSLEGFICKFNRKRRLYIENI----------------MQVRVTGILIEDEKVLLVKQKVA---NRDWSLPGGRVENGETL 61 (171)
T ss_dssp -------------------------------------CEEEEEEEEEETTEEEEEECSST---TCCEECCEEECCTTCCH
T ss_pred CCccccccccChhhhhccCCc----------------eEEEEEEEEEECCEEEEEEEECC---CCeEECCCccCCCCCCH
Confidence 457789999999988874321 23455666677899999999764 89999999 9999988
Q ss_pred hhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEeeceEEEEEEEEEEecc-cc-------cccCCCCceeeeCC
Q psy8564 250 INFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKLTHLQFKIVPCHIFLKK-CF-------LKENKNNFIWYPIK 320 (341)
Q Consensus 250 ~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~~h~~~~l~~~~~~~~~-~~-------~~~~~~~~~W~~~~ 320 (341)
.+|+.||+.||+|++ .....+..+.+.+++......+|.+...+ .. ...+..+++|++++
T Consensus 62 -----------~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~ 130 (171)
T 3id9_A 62 -----------EEAMIREMREETGLEVKIKKLLYVCDKPDASPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPIN 130 (171)
T ss_dssp -----------HHHHHHHHHHHHCCCEEEEEEEEEEEETTSSSCEEEEEEEEEEC-------------CCCCCEEEEETG
T ss_pred -----------HHHHHHHHHHHHCCccccceEEEEEcccCCCCcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHH
Confidence 999999999999999 76677777777777766666777777543 11 11334789999999
Q ss_pred CCCCCCCCHHHHHHHHHh
Q psy8564 321 KIKNSPIPAPVRKILFQI 338 (341)
Q Consensus 321 el~~~~~~~a~~~il~~l 338 (341)
++.++++++++++++++.
T Consensus 131 el~~~~~~~~~~~~l~~~ 148 (171)
T 3id9_A 131 ELSYYGFSETFINLISGG 148 (171)
T ss_dssp GGGGGTCCTTCSHHHHHG
T ss_pred HHhhCCCCHHHHHHHHHh
Confidence 999999999999998865
No 29
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.75 E-value=4.2e-18 Score=143.89 Aligned_cols=122 Identities=13% Similarity=0.123 Sum_probs=100.1
Q ss_pred cccceeEEEEEEEeC--CEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccc
Q psy8564 206 NIKNCSIIMFIVIDD--DYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLI 280 (341)
Q Consensus 206 ~~~~~~~~~~ii~~~--g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~ 280 (341)
..+...++++++.++ |+|||.||+ ++.|+|+|+||| +|.||++ .+|+.||+.||+|+. .....
T Consensus 6 ~~~~~~~v~~vi~~~~~~~vLL~~r~-~~~~~g~w~lPgG~ve~gEs~-----------~~aa~REl~EEtGl~~~~~~~ 73 (161)
T 3exq_A 6 TQPVELVTMVMVTDPETQRVLVEDKV-NVPWKAGHSFPGGHVEVGEPC-----------ATAAIREVFEETGLRLSGVTF 73 (161)
T ss_dssp CCCEEEEEEEEEBCTTTCCEEEECCC-CCTTTCSBBCCCCBCCTTSCH-----------HHHHHHHHHHHHCCEESCCEE
T ss_pred cCCceEEEEEEEEeCCCCEEEEEEcc-CCCCCCCEEccceecCCCCCH-----------HHHHHHHHHHhhCcEecCCcE
Confidence 334455566666555 499999998 678999999999 9999988 999999999999999 77778
Q ss_pred cCcEEEEe--eceEEEEEEEEEEecc-cccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhh
Q psy8564 281 LPIISHKL--THLQFKIVPCHIFLKK-CFLKENKNNFIWYPIKKIKNSPIPAPVRKILFQII 339 (341)
Q Consensus 281 ~~~~~h~~--~h~~~~l~~~~~~~~~-~~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~ 339 (341)
+..+.|.+ ++.++.+.+|.+...+ .+...+..+++|++++++.++++++.++++++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 135 (161)
T 3exq_A 74 CGTCEWFDDDRQHRKLGLLYRASNFTGTLKASAEGQLSWLPITALTRENSAASLPEFLQVFT 135 (161)
T ss_dssp EEEEEEECSSCSSEEEEEEEEECCEESCCCGGGTTTEEEECGGGCCTTTBCTTHHHHHHHHT
T ss_pred EEEEecccCCCCeEEEEEEEEEeccCCccCCCccceEEEeeHHHhhhCccChHHHHHHHHHh
Confidence 88888888 6778888999988544 22233347899999999999999999999998875
No 30
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.73 E-value=9.1e-18 Score=142.04 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=87.1
Q ss_pred ccceeEEEEEEEeCCEEEEEEeCC-CCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccC
Q psy8564 207 IKNCSIIMFIVIDDDYVLFQKRSN-KGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILP 282 (341)
Q Consensus 207 ~~~~~~~~~ii~~~g~vLl~kR~~-~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~ 282 (341)
.+...++++|+.++|+|||.||+. ++.++|+|+||| +|.||++ .+|+.||+.||+|++ .....+.
T Consensus 25 ~~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~-----------~~aa~REl~EEtGl~~~~~~~~~ 93 (165)
T 3oga_A 25 MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERI-----------EEALRREIREELGEQLILSDITP 93 (165)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCH-----------HHHHHHHHHHHHCSSCCEEEEEE
T ss_pred cceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCH-----------HHHHHHHHHHHhCCCccccceee
Confidence 344556677778899999999984 568999999999 9999988 999999999999998 5443332
Q ss_pred c------EEEEeeceEE-----EEEEEEEEecc-cc-cccCCCCceeeeCCCCCCCCCCHHHHHHHHHh
Q psy8564 283 I------ISHKLTHLQF-----KIVPCHIFLKK-CF-LKENKNNFIWYPIKKIKNSPIPAPVRKILFQI 338 (341)
Q Consensus 283 ~------~~h~~~h~~~-----~l~~~~~~~~~-~~-~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l 338 (341)
. ..|.|++..+ .+.+|.+...+ .. ...+..+++|++++++.+++++++++++++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~ 162 (165)
T 3oga_A 94 WTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELALYDLNVATRHTLALK 162 (165)
T ss_dssp EEEEEEEEEEEC--CCEEEEEEEEEEEEEEESCCCCCCCTTEEEEEEECGGGGGGSCBCHHHHHHHHHT
T ss_pred eeeecceeeEecCCCCceeEEEEEEEEEeeccCCCccCCchheeeEEccHHHHhhCCCCHHHHHHHHHh
Confidence 1 2477776643 35566666544 11 12233679999999999999999999999875
No 31
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.73 E-value=1.5e-17 Score=142.69 Aligned_cols=119 Identities=9% Similarity=0.054 Sum_probs=98.9
Q ss_pred eeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEE
Q psy8564 210 CSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISH 286 (341)
Q Consensus 210 ~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h 286 (341)
..++++++.++|+|||.||. .+.++|+|+||| +|.||++ .+|+.||+.||+|+. .....++.+.|
T Consensus 25 ~~~~~~vi~~~~~vLL~~r~-~~~~~g~W~lPgG~ve~gEs~-----------~~aa~REl~EEtGl~~~~~~~l~~~~~ 92 (176)
T 3q93_A 25 RLYTLVLVLQPQRVLLGMKK-RGFGAGRWNGFGGKVQEGETI-----------EDGARRELQEESGLTVDALHKVGQIVF 92 (176)
T ss_dssp EEEEEEEEECSSEEEEEEEC-SSTTTTSEECEEEECCTTSCH-----------HHHHHHHHHHHHSCEESCCEEEEEEEE
T ss_pred cEEEEEEEEeCCEEEEEEEc-CCCCCCeEECceecCCCCCCH-----------HHHHHHHHHHHHCCcceeeEEEEEEEE
Confidence 44566677788999999995 467899999999 9999988 999999999999999 77788889999
Q ss_pred Eeec--eEEEEEEEEEEecc-cccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 287 KLTH--LQFKIVPCHIFLKK-CFLKENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 287 ~~~h--~~~~l~~~~~~~~~-~~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
.+++ .++.+++|.+...+ .+...++.+.+|++++++.++++++++++++..+.+
T Consensus 93 ~~~~~~~~~~~~~f~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 149 (176)
T 3q93_A 93 EFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQ 149 (176)
T ss_dssp EETTCSCEEEEEEEEESCEESCCCCCSSEEEEEEETTCCCGGGBCTTHHHHHHHHHT
T ss_pred EcCCCCcEEEEEEEEEECCCCCcCCCcceeeEEeeHHHccccccCcchHHHHHHHHc
Confidence 9877 57778999988543 222223357899999999999999999999988754
No 32
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.71 E-value=5.2e-17 Score=136.53 Aligned_cols=120 Identities=12% Similarity=0.155 Sum_probs=98.2
Q ss_pred cceeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcE
Q psy8564 208 KNCSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPII 284 (341)
Q Consensus 208 ~~~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~ 284 (341)
+.+..+++++.++|+|||.||.... ++|+|+||| +|.||++ .+|+.||+.||+|++ .....+..+
T Consensus 27 ~~~~~v~~vi~~~~~vLL~~r~~~~-~~~~w~lPgG~ve~gEs~-----------~~aa~REl~EEtGl~~~~~~~~~~~ 94 (157)
T 4dyw_A 27 QPRVGCGAAIVRDGRILLIKRKRAP-EAGCWGLPGGKVDWLEPV-----------ERAVCREIEEELGIALERATLLCVV 94 (157)
T ss_dssp CCEEEEEEEEEETTEEEEEEECSSS-STTCEECCEEECCTTCCH-----------HHHHHHHHHHHHSCEEESCEEEEEE
T ss_pred CceeEEEEEEEECCEEEEEEecCCC-CCCEEECCcccCCCCCCH-----------HHHHHHHHHHHHCcccccCcEEEEE
Confidence 3445566666679999999998655 899999999 9999988 999999999999999 777888888
Q ss_pred EEEe--eceEEEEEEEEEEecc-cc--c-ccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 285 SHKL--THLQFKIVPCHIFLKK-CF--L-KENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 285 ~h~~--~h~~~~l~~~~~~~~~-~~--~-~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
.|.+ ++.++.+.+|.+...+ .. . ..+..+++|++++++.+ .+++..+++|+.|+.
T Consensus 95 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~-~l~~~~~~~l~~l~~ 155 (157)
T 4dyw_A 95 DHIDAANGEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQ-PLTHATRIALEQVTR 155 (157)
T ss_dssp EEEETTTTEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCCS-SBCHHHHHHHHHHC-
T ss_pred EeeccCCCcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHccc-ccCHHHHHHHHHHHh
Confidence 8888 5778888999988644 21 1 12235789999999999 899999999998864
No 33
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.71 E-value=2.3e-17 Score=134.20 Aligned_cols=113 Identities=16% Similarity=0.079 Sum_probs=94.5
Q ss_pred eEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEE
Q psy8564 211 SIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHK 287 (341)
Q Consensus 211 ~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~ 287 (341)
..+++++.++|+|||.||+. |+|+||| +|.||++ .+|+.||+.||+|++ .....++.+.|.
T Consensus 5 ~~~~~vi~~~~~vLl~~r~~-----~~w~~PgG~ve~gE~~-----------~~aa~RE~~EE~Gl~~~~~~~~~~~~~~ 68 (134)
T 2pbt_A 5 FSAGGVLFKDGEVLLIKTPS-----NVWSFPKGNIEPGEKP-----------EETAVREVWEETGVKGEILDYIGEIHYW 68 (134)
T ss_dssp EEEEEEEEETTEEEEEECTT-----SCEECCEEECCTTCCH-----------HHHHHHHHHHHHSEEEEEEEEEEEEEEE
T ss_pred eEEEEEEEECCEEEEEEeCC-----CcEECCccccCCCCCH-----------HHHHHHHHHHHHCCccEEeeeeeEEEEE
Confidence 45556666689999999965 9999999 9999988 999999999999999 777888889999
Q ss_pred ee----ceEEEEEEEEEEecc-cc-cccCCCCceeeeCCCCCCCCCCHHHHHHHHHhh
Q psy8564 288 LT----HLQFKIVPCHIFLKK-CF-LKENKNNFIWYPIKKIKNSPIPAPVRKILFQII 339 (341)
Q Consensus 288 ~~----h~~~~l~~~~~~~~~-~~-~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~ 339 (341)
|+ +.+..+++|.+...+ .. ...+..+++|++++++.++.++++++++++.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 126 (134)
T 2pbt_A 69 YTLKGERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEIFEKAL 126 (134)
T ss_dssp EEETTEEEEEEEEEEEEEEEEECCCCCTTSSEEEEEEHHHHHHHCCSHHHHHHHHHHH
T ss_pred eeCCCcEEEEEEEEEEEEecCCCcCCCcceeEEEEEcHHHHHhhhcchhHHHHHHHHH
Confidence 98 678888999998754 11 111347899999999999999999999998764
No 34
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.70 E-value=3.6e-17 Score=136.72 Aligned_cols=119 Identities=13% Similarity=0.210 Sum_probs=92.2
Q ss_pred ceeEEEEEEEeCCE----EEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-cccccc
Q psy8564 209 NCSIIMFIVIDDDY----VLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLIL 281 (341)
Q Consensus 209 ~~~~~~~ii~~~g~----vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~ 281 (341)
...++++++.++|+ +|+.+|+.++ |+| |+||| +|.||++ .+|+.||+.||+|++ .....+
T Consensus 7 ~~~~~~~ii~~~~~~~~~vLl~~r~~~~-~~g-w~lPgG~ve~gE~~-----------~~aa~RE~~EEtGl~~~~~~~~ 73 (155)
T 2b06_A 7 TILTNICLIEDLETQRVVMQYRAPENNR-WSG-YAFPGGHVENDEAF-----------AESVIREIYEETGLTIQNPQLV 73 (155)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEC------CCE-EECCCCBCCTTSCH-----------HHHHHHHHHHHHSEEEESCEEE
T ss_pred cEEEEEEEEEECCCCeEEEEEEECCCCC-CCC-EeccceecCCCCCH-----------HHHHHHHHHHHhCccccCCcEE
Confidence 44556666677777 9999998776 888 99999 9999988 999999999999999 766777
Q ss_pred CcEEEEee-ceEEEEEEEEEEecc-cccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 282 PIISHKLT-HLQFKIVPCHIFLKK-CFLKENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 282 ~~~~h~~~-h~~~~l~~~~~~~~~-~~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
....|.++ +.++.+++|.|...+ .....+..+++|++++++.+++++++.+++++.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 134 (155)
T 2b06_A 74 GIKNWPLDTGGRYIVICYKATEFSGTLQSSEEGEVSWVQKDQIPNLNLAYDMLPLMEMMEA 134 (155)
T ss_dssp EEEEEECTTSCEEEEEEEEECEEEECCCCBTTBEEEEEEGGGGGGSCBCTTHHHHHHHHHC
T ss_pred EEEeeccCCCceEEEEEEEEEecCCCCCCCcceeeEEeeHHHhhhCCCChhHHHHHHHHhC
Confidence 77777664 677888999888644 222233478999999999999999999999987753
No 35
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.69 E-value=6.2e-17 Score=132.77 Aligned_cols=114 Identities=16% Similarity=0.063 Sum_probs=90.1
Q ss_pred eeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEE
Q psy8564 210 CSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISH 286 (341)
Q Consensus 210 ~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h 286 (341)
..++++|+.++|+|||.||.. |.|+||| +|.|||+ .+|+.||+.||+|++ .....++.+.|
T Consensus 4 ~~aag~vv~~~~~vLL~~r~~-----g~W~~PgG~ve~gEt~-----------~~aa~RE~~EEtGl~~~~~~~l~~~~~ 67 (134)
T 3i7u_A 4 EFSAGGVLFKDGEVLLIKTPS-----NVWSFPKGNIEPGEKP-----------EETAVREVWEETGVKGEILDYIGEIHY 67 (134)
T ss_dssp EEEEEEEEEETTEEEEEECTT-----SCEECCEEECCTTCCH-----------HHHHHHHHHHHHSEEEEEEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEeCC-----CcEECCeeEecCCCCH-----------HHHHHHHHHHhcCceEEEeeeeeeeeE
Confidence 346667778899999999953 6899999 9999998 999999999999999 77777887777
Q ss_pred Eeec----eEEEEEEEEEEecc-cc-cccCCCCceeeeCCCCCCCCCCHHHHHHHHHhh
Q psy8564 287 KLTH----LQFKIVPCHIFLKK-CF-LKENKNNFIWYPIKKIKNSPIPAPVRKILFQII 339 (341)
Q Consensus 287 ~~~h----~~~~l~~~~~~~~~-~~-~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~ 339 (341)
.|+. .+..+++|.|...+ .+ ...++.+++|++++|+.++...+.++.++++..
T Consensus 68 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~l~~~~~r~il~~a~ 126 (134)
T 3i7u_A 68 WYTLKGERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEIFEKAL 126 (134)
T ss_dssp EEEETTEEEEEEEEEEEEEEEEECCCCCTTSSEEEEEEHHHHHHHBCSHHHHHHHHHHH
T ss_pred EecCCCceEEEEEEEEEEEEcCCcCcCChhheEEEEEEHHHHhhhcCChHHHHHHHHHH
Confidence 7643 23456778887654 22 223457899999999998877888999887653
No 36
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.67 E-value=2.9e-16 Score=136.22 Aligned_cols=116 Identities=16% Similarity=0.245 Sum_probs=93.8
Q ss_pred eeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEE
Q psy8564 210 CSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISH 286 (341)
Q Consensus 210 ~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h 286 (341)
..++++++.++|+|||.||+. +|+|+||| +|.||++ .+|+.||+.||+|++ .....++.+.+
T Consensus 4 ~~v~~~vi~~~~~vLL~~r~~----~g~W~lPGG~ve~gEs~-----------~~aa~REl~EEtGl~~~~~~~~~~~~~ 68 (188)
T 3fk9_A 4 QRVTNCIVVDHDQVLLLQKPR----RGWWVAPGGKMEAGESI-----------LETVKREYWEETGITVKNPELKGIFSM 68 (188)
T ss_dssp CEEEEEEEEETTEEEEEECTT----TCCEECCEEECCTTCCH-----------HHHHHHHHHHHHSCEESSCEEEEEEEE
T ss_pred eEEEEEEEEECCEEEEEEeCC----CCeEECCeecccCCCCH-----------HHHHHHHHHHHHCCCCCCceEEEEEEE
Confidence 345666667789999999964 78999999 9999988 999999999999999 77777788888
Q ss_pred Eeec-----eEEEEEEEEEEecc-cc-cccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 287 KLTH-----LQFKIVPCHIFLKK-CF-LKENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 287 ~~~h-----~~~~l~~~~~~~~~-~~-~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
.+++ .++.+++|.+...+ .. ...+..+++|++++++.+++++++++.+++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~f~a~~~~~~~~~~~e~~~~~W~~~~el~~~~l~~~~~~~l~~~l~ 129 (188)
T 3fk9_A 69 VIFDEGKIVSEWMLFTFKATEHEGEMLKQSPEGKLEWKKKDEVLELPMAAGDKWIFKHVLH 129 (188)
T ss_dssp EEEETTEEEEEEEEEEEEESCEESCCCSEETTEEEEEEEGGGGGGSCCCHHHHHHHHHHTT
T ss_pred EecCCCcceEEEEEEEEEEECCCCCCcCCCCCEeEEEEEHHHhhhCCCCHHHHHHHHHHHc
Confidence 8866 34578888887543 22 1222257999999999999999999999998754
No 37
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.67 E-value=7.4e-17 Score=138.37 Aligned_cols=131 Identities=9% Similarity=0.070 Sum_probs=99.8
Q ss_pred cccccc-cCcccceeEEEEE-EEeCCEEEEEEeCCCC-cccccccc-cc--cccccchhhhccchhhhhHHHHHHHHHHh
Q psy8564 198 NFLIKN-KKNIKNCSIIMFI-VIDDDYVLFQKRSNKG-IWGGLLSF-PE--WILKDKIINFVDNNLKNLIELEIKKFISS 271 (341)
Q Consensus 198 ~~p~~~-kk~~~~~~~~~~i-i~~~g~vLl~kR~~~g-~~~GlWEF-Pg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee 271 (341)
..|.+. ++......+++++ +..+|++||.+|...+ .++|+|+| || +|.||++ .+|+.||+.||
T Consensus 24 ~~~r~~~~~~~~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~-----------~~aa~REl~EE 92 (180)
T 2fkb_A 24 QASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQL-----------LESARREAEEE 92 (180)
T ss_dssp EEEHHHHHHHTCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCH-----------HHHHHHHHHHH
T ss_pred EEEHHHhhccCceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCH-----------HHHHHHHHHHH
Confidence 445443 3323333344444 4457899999997654 56999999 98 9999988 99999999999
Q ss_pred cCCc-ccccccCcEEEEeeceEEEEEEEEEEecccc--cccCCCCceeeeCCCCCCC--CCCHHHHHHHHHhh
Q psy8564 272 FGFI-KNYLILPIISHKLTHLQFKIVPCHIFLKKCF--LKENKNNFIWYPIKKIKNS--PIPAPVRKILFQII 339 (341)
Q Consensus 272 ~g~~-~~~~~~~~~~h~~~h~~~~l~~~~~~~~~~~--~~~~~~~~~W~~~~el~~~--~~~~a~~~il~~l~ 339 (341)
+|+. .....++.+.|.+++.++.+++|.|...+.. ...+..++.|++++++.++ +|++++++++..+.
T Consensus 93 tGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~~ 165 (180)
T 2fkb_A 93 LGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWM 165 (180)
T ss_dssp HCCBSCCCEEEEEEEEEETTEEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHTTGGGBCHHHHHHHHHHH
T ss_pred HCCCccceEEEEEEEecCCCceEEEEEEEEecCCCcCCChhHhheEEEecHHHHHHHHHHhCCcHHHHHHHHH
Confidence 9998 6667788888999999999999999854421 1222357899999999998 89999999987764
No 38
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.67 E-value=7.1e-17 Score=129.98 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=92.5
Q ss_pred EEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEee
Q psy8564 213 IMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKLT 289 (341)
Q Consensus 213 ~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~~ 289 (341)
.++++..+|++||.||.. |+|+||| +|.||++ .+|+.||+.||+|+. .....++.+.|.++
T Consensus 6 ~~vi~~~~~~vLl~~r~~-----g~w~~PgG~ve~gE~~-----------~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~ 69 (126)
T 1vcd_A 6 GGVVFNAKREVLLLRDRM-----GFWVFPKGHPEPGESL-----------EEAAVREVWEETGVRAEVLLPLYPTRYVNP 69 (126)
T ss_dssp EEEEECTTSCEEEEECTT-----SCEECCEECCCTTCCH-----------HHHHHHHHHHHHCCEEEEEEEEEEEEEECT
T ss_pred EEEEEcCCCEEEEEEECC-----CCccCCcCcCCCCCCH-----------HHHHHHHHHHhhCcEeeeccEEeEEEEecC
Confidence 344445578999999965 7899999 9999988 899999999999999 77778888889999
Q ss_pred ceEEEEEEEEEEecc-c-ccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 290 HLQFKIVPCHIFLKK-C-FLKENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 290 h~~~~l~~~~~~~~~-~-~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
|.+..+++|.+...+ . ....+..+++|++++++.++.++++++++++++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~l~~~~~ 122 (126)
T 1vcd_A 70 KGVEREVHWFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALE 122 (126)
T ss_dssp TSCEEEEEEEEEEEESCCCCCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHHH
T ss_pred CceEEEEEEEEEEcCCCCCCCcceeeeEEcCHHHHHHhhcChhHHHHHHHHHH
Confidence 998889999887543 2 12233468999999999999999999999987753
No 39
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.66 E-value=2.1e-17 Score=143.80 Aligned_cols=133 Identities=11% Similarity=0.081 Sum_probs=95.3
Q ss_pred CCCCCccccccccccCccccccccc-cCcccceeEEEEEEEeCC--EEEEEEeCCC-Ccccccccccc--cccccchhhh
Q psy8564 179 CKVCPLQLCCISYKTNKINNFLIKN-KKNIKNCSIIMFIVIDDD--YVLFQKRSNK-GIWGGLLSFPE--WILKDKIINF 252 (341)
Q Consensus 179 C~~Cpl~~~C~~~~~~~~~~~p~~~-kk~~~~~~~~~~ii~~~g--~vLl~kR~~~-g~~~GlWEFPg--vE~~E~~~~~ 252 (341)
|..+|+++.|.++..+....+|.+. +++.....++++++.++| +|||.||... +.++|+|+||| +|.||++
T Consensus 3 ~p~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~--- 79 (194)
T 1nqz_A 3 APHDPLDDIQADPWALWLSGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETP--- 79 (194)
T ss_dssp -CCCHHHHHHTCTTCCCBCC----------CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCH---
T ss_pred CCCCcCCHHHHHHHHHHHhhcChhhccCCCCceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCH---
Confidence 5688999999999999999999886 433333344455556677 9999999764 67899999999 9999988
Q ss_pred ccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEeeceEEEEEEEEEEecc--c-c--cccCCCCceeeeCCCC
Q psy8564 253 VDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKLTHLQFKIVPCHIFLKK--C-F--LKENKNNFIWYPIKKI 322 (341)
Q Consensus 253 ~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~~h~~~~l~~~~~~~~~--~-~--~~~~~~~~~W~~~~el 322 (341)
++|+.||+.||+|++ .....++.+.|.+++....+++|.+.+.. . . ...+..++.|++++++
T Consensus 80 --------~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el 147 (194)
T 1nqz_A 80 --------TQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAEL 147 (194)
T ss_dssp --------HHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHH
T ss_pred --------HHHHHHHHHHHHCCCccceEEEEEccCccCCCCeEEEEEEEEecCCccccCCCccceeEEEEEEHHHh
Confidence 999999999999999 77777878888887777788899988753 1 1 1222357899999988
No 40
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.64 E-value=2e-16 Score=130.80 Aligned_cols=115 Identities=9% Similarity=0.057 Sum_probs=87.1
Q ss_pred EEEEEEEe-CCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccc--cccC---
Q psy8564 212 IIMFIVID-DDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNY--LILP--- 282 (341)
Q Consensus 212 ~~~~ii~~-~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~--~~~~--- 282 (341)
+.++|+.. +|++||.||+.+ +|+|+||| +|.||++ .+|+.||+.||+|+. ... ..++
T Consensus 12 v~~~i~~~~~~~vLl~~r~~~---~g~w~~PgG~ve~gE~~-----------~~aa~RE~~EEtGl~~~~~~~~~~~~~~ 77 (150)
T 2o1c_A 12 ILVVIYAQDTKRVLMLQRRDD---PDFWQSVTGSVEEGETA-----------PQAAMREVKEEVTIDVVAEQLTLIDCQR 77 (150)
T ss_dssp EEEEEEETTTCEEEEEECSSS---TTCEESEEEECCTTCCH-----------HHHHHHHHHHHHCCCHHHHTCCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEEecCC---CCceECCccccCCCCCH-----------HHHHHHHHHHHhCCCccccceeEEeeec
Confidence 34445544 499999999765 68999999 9999988 999999999999998 432 1221
Q ss_pred --------cEEEEee--ceEEEEEEEEEEeccc--ccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 283 --------IISHKLT--HLQFKIVPCHIFLKKC--FLKENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 283 --------~~~h~~~--h~~~~l~~~~~~~~~~--~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
...|.|+ +.++.+++|.+...+. ....+..+++|++++++.++.++++++++++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 147 (150)
T 2o1c_A 78 TVEFEIFSHLRHRYAPGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVI 147 (150)
T ss_dssp EEEEECCGGGGGGBCTTCCEEEEEEEEEEESSCCCCCCSSSSCEEEEEHHHHHHHCSCHHHHHHHHHHTT
T ss_pred eeeeeeecccccccCCCCcceEEEEEEEEcCCCCCcChhHhhccEeecHHHHHhhhcCHHHHHHHHHHHH
Confidence 1122344 4578889999987642 11234578999999999999999999999998764
No 41
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.62 E-value=1.8e-16 Score=132.88 Aligned_cols=116 Identities=14% Similarity=0.167 Sum_probs=89.4
Q ss_pred eEEEEEEE-eCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-c--cccccCcE
Q psy8564 211 SIIMFIVI-DDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-K--NYLILPII 284 (341)
Q Consensus 211 ~~~~~ii~-~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~--~~~~~~~~ 284 (341)
..+.+++. .+|+|||.||..+ .++|+|+||| +|.||++ .+|+.||+.||+|+. . ....++.+
T Consensus 19 ~~v~~vi~~~~~~vLl~~r~~~-~~~g~w~~PgG~ve~gE~~-----------~~aa~REl~EEtGl~~~~~~~~~~~~~ 86 (160)
T 1rya_A 19 VSLDFIVENSRGEFLLGKRTNR-PAQGYWFVPGGRVQKDETL-----------EAAFERLTMAELGLRLPITAGQFYGVW 86 (160)
T ss_dssp EEEEEEEECTTSCEEEEEECSS-SSTTSEECCEEECCTTCCH-----------HHHHHHHHHHHHSSCCCGGGSEEEEEE
T ss_pred EEEEEEEEcCCCEEEEEeccCC-CCCCEEECCccccCCCCCH-----------HHHHHHHHHHHHCCCCCcccceEEEEE
Confidence 34444444 4899999999865 4799999999 9999988 999999999999998 3 45677888
Q ss_pred EEEeece--------EEEEEEEEEEecc-cc--cccCCCCceeeeCCCCCCCCC-CHHHHHHHHHh
Q psy8564 285 SHKLTHL--------QFKIVPCHIFLKK-CF--LKENKNNFIWYPIKKIKNSPI-PAPVRKILFQI 338 (341)
Q Consensus 285 ~h~~~h~--------~~~l~~~~~~~~~-~~--~~~~~~~~~W~~~~el~~~~~-~~a~~~il~~l 338 (341)
.|.|+|. ++.+++|.+...+ .. ...+..+++|++++++.++++ .+..+.+++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~~ 152 (160)
T 1rya_A 87 QHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAE 152 (160)
T ss_dssp EEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTTBCHHHHGGGCHH
T ss_pred eEEEcccccCCCcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhhccccCHHHHHHHHHH
Confidence 9999875 7888999998654 21 122336789999999999875 45566666544
No 42
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.62 E-value=6.7e-16 Score=126.20 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=89.4
Q ss_pred EEEEEEEe---CCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-cc---c-ccc
Q psy8564 212 IIMFIVID---DDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KN---Y-LIL 281 (341)
Q Consensus 212 ~~~~ii~~---~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~---~-~~~ 281 (341)
+.++++.. +++|||.||+.+ +|+|+||| +|.||++ .+|+.||+.||+|+. .. . ..+
T Consensus 6 ~~~vi~~~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gE~~-----------~~aa~RE~~EEtGl~~~~~~~~~~~~ 71 (138)
T 1ktg_A 6 AGLVIYRKLAGKIEFLLLQASYP---PHHWTPPKGHVDPGEDE-----------WQAAIRETKEEANITKEQLTIHEDCH 71 (138)
T ss_dssp EEEEEEEEETTEEEEEEEEESST---TCCEESSEEECCTTCCH-----------HHHHHHHHHHHHCCCGGGEEEEEEEE
T ss_pred EEEEEEEecCCCcEEEEEEccCC---CCcEeCCccccCCCCCH-----------HHHHHHHHHHHHCCCccceEEecccc
Confidence 34444444 368999999743 58999999 9999988 999999999999995 22 2 344
Q ss_pred CcEEEEeeceEEEEEEEEEEecc-cc--cccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 282 PIISHKLTHLQFKIVPCHIFLKK-CF--LKENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 282 ~~~~h~~~h~~~~l~~~~~~~~~-~~--~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
..+.|.+++.+..+++|.+...+ .. ...+..++.|++++++.++.+++.++++++++.+
T Consensus 72 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 133 (138)
T 1ktg_A 72 ETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSA 133 (138)
T ss_dssp EEEEEEETTEEEEEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ceEEEEeCCCceEEEEEEEEecCCcccCCCchhcEeEeccHHHHHHhhccchHHHHHHHHHH
Confidence 56778888888999999998755 21 1223357899999999999999999999988754
No 43
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.61 E-value=4.3e-16 Score=128.79 Aligned_cols=115 Identities=11% Similarity=-0.024 Sum_probs=87.1
Q ss_pred eeEEEEEEEe--CCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcE
Q psy8564 210 CSIIMFIVID--DDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPII 284 (341)
Q Consensus 210 ~~~~~~ii~~--~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~ 284 (341)
+..+++++.+ +|+|||.||+. |+|+||| +|.||++ .+|+.||+.||+|++ .....++.+
T Consensus 18 ~~~~~~vi~~~~~~~vLl~~r~~-----g~w~~PgG~ve~gE~~-----------~~aa~RE~~EEtGl~~~~~~~~~~~ 81 (148)
T 2azw_A 18 RYAAYIIVSKPENNTMVLVQAPN-----GAYFLPGGEIEGTETK-----------EEAIHREVLEELGISVEIGCYLGEA 81 (148)
T ss_dssp CCEEEEECEEGGGTEEEEEECTT-----SCEECSEEECCTTCCH-----------HHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred eeEEEEEEECCCCCeEEEEEcCC-----CCEeCCCcccCCCCCH-----------HHHHHHHHHHHhCCeeEeeeEEEEE
Confidence 3344444444 49999999952 8999999 9999988 899999999999998 665666655
Q ss_pred E-EEe-----eceEEEEEEEEEEeccc--ccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 285 S-HKL-----THLQFKIVPCHIFLKKC--FLKENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 285 ~-h~~-----~h~~~~l~~~~~~~~~~--~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
. +.+ +|.++.+++|.+...+. ....+..++.|++++++.++.+++.++.+++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 145 (148)
T 2azw_A 82 DEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSHRWAVEKWLA 145 (148)
T ss_dssp EEEEEETTTTEEEEEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHHBSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCcceEEEEEEEEEEcCcCCcCCCCceeeEEEeeHHHHHhhhcchhHHHHHHHHHH
Confidence 3 222 34667788898886541 11223468999999999999999999999988754
No 44
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.61 E-value=8.3e-16 Score=127.88 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=94.4
Q ss_pred eeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEE
Q psy8564 210 CSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISH 286 (341)
Q Consensus 210 ~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h 286 (341)
...+++|+.++|++||.||...+. +|+|+||| +|.||++ .+|+.||+.||+|+. .....++.+.|
T Consensus 8 ~~~v~~ii~~~~~vLl~~r~~~~~-~~~w~lPgG~ve~gE~~-----------~~aa~RE~~EEtGl~~~~~~~~~~~~~ 75 (153)
T 2b0v_A 8 NVTVAAVIEQDDKYLLVEEIPRGT-AIKLNQPAGHLEPGESI-----------IQACSREVLEETGHSFLPEVLTGIYHW 75 (153)
T ss_dssp EEEEEEECEETTEEEEEEECSSSS-CCEEECSEEECCTTSCH-----------HHHHHHHHHHHHSEEEEEEEEEEEEEE
T ss_pred CEEEEEEEeeCCEEEEEEEcCCCC-CCeEECCCcCcCCCCCH-----------HHHHHHHHHHhhCcEeccceEEEEEEE
Confidence 445666777899999999988877 99999999 9999988 999999999999999 76677777778
Q ss_pred Eee--ceEEEEEEEEEEeccc----ccccCCCCceeeeCCCCCC---CCCCHHHHHHHHHhhc
Q psy8564 287 KLT--HLQFKIVPCHIFLKKC----FLKENKNNFIWYPIKKIKN---SPIPAPVRKILFQIIQ 340 (341)
Q Consensus 287 ~~~--h~~~~l~~~~~~~~~~----~~~~~~~~~~W~~~~el~~---~~~~~a~~~il~~l~~ 340 (341)
.++ +.++.+++|.+...+. ....+..++.|++++++.+ ...++..++++..+.+
T Consensus 76 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~l~~~~~ 138 (153)
T 2b0v_A 76 TCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDYHA 138 (153)
T ss_dssp EETTTTEEEEEEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHHHT
T ss_pred eCCCCCcEEEEEEEEEEeCCCCCCCCCCCCeeeEEEecHHHHhhhhcccCcHHHHHHHHHHHh
Confidence 887 4566778888886441 1122235789999999988 4678888888877643
No 45
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.58 E-value=2e-15 Score=126.32 Aligned_cols=105 Identities=6% Similarity=0.002 Sum_probs=82.8
Q ss_pred EEEEEE-EeCCEEEEEEeCC---CCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcE
Q psy8564 212 IIMFIV-IDDDYVLFQKRSN---KGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPII 284 (341)
Q Consensus 212 ~~~~ii-~~~g~vLl~kR~~---~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~ 284 (341)
.+++++ +.+|++||.||.. ++.++|+|+||| +|.||++ .+|+.||+.||+|+. .....++.+
T Consensus 15 ~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~-----------~~aa~RE~~EEtGl~~~~~~~l~~~ 83 (159)
T 1sjy_A 15 AAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENP-----------QDAAVREACEETGLRVRPVKFLGAY 83 (159)
T ss_dssp EEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCH-----------HHHHHHHHHHHHSCCEEEEEEEEEE
T ss_pred eEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCH-----------HHHHHHHHHHHHCccceeeEEEEEE
Confidence 344444 4579999999986 677899999999 9999988 999999999999999 777788888
Q ss_pred EEEeec-eEEEEEEEEEEecc-c-c---cccCCCCceeeeCCCCCCCCC
Q psy8564 285 SHKLTH-LQFKIVPCHIFLKK-C-F---LKENKNNFIWYPIKKIKNSPI 327 (341)
Q Consensus 285 ~h~~~h-~~~~l~~~~~~~~~-~-~---~~~~~~~~~W~~~~el~~~~~ 327 (341)
.|.|+| .++.+++|.+...+ . . ...+..++.|++++++.++..
T Consensus 84 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 132 (159)
T 1sjy_A 84 LGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYA 132 (159)
T ss_dssp EEECTTSCEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHH
T ss_pred ecccCCCceEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHHhhh
Confidence 999988 78889999998754 2 2 122335789999999876543
No 46
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=99.58 E-value=1.2e-14 Score=126.05 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=86.4
Q ss_pred eEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEE
Q psy8564 211 SIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHK 287 (341)
Q Consensus 211 ~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~ 287 (341)
.++++|+.++|+|||.||...+ .+|+|+||| +|.||++ .+|+.||+.||+|+. .....+. .|.
T Consensus 41 ~~v~~ii~~~~~vLL~~r~~~~-~~g~w~lPgG~ve~gEs~-----------~~aa~REl~EEtGl~~~~~~~~~--~~~ 106 (189)
T 3cng_A 41 VIVGCIPEWENKVLLCKRAIAP-YRGKWTLPAGFMENNETL-----------VQGAARETLEEANARVEIRELYA--VYS 106 (189)
T ss_dssp EEEEEEEEETTEEEEEEESSSS-STTCEECSEEECCTTCCH-----------HHHHHHHHHHHHCCCEEEEEEEE--EEE
T ss_pred eEEEEEEEeCCEEEEEEccCCC-CCCeEECceeeccCCCCH-----------HHHHHHHHHHHHCCccccceeEE--EEe
Confidence 4556666679999999997654 489999999 9999988 999999999999998 5444332 367
Q ss_pred eeceEEEEEEEEEEecc-cc-cccCCCCceeeeCCCCC--CCCCCHHHHHHHHHh
Q psy8564 288 LTHLQFKIVPCHIFLKK-CF-LKENKNNFIWYPIKKIK--NSPIPAPVRKILFQI 338 (341)
Q Consensus 288 ~~h~~~~l~~~~~~~~~-~~-~~~~~~~~~W~~~~el~--~~~~~~a~~~il~~l 338 (341)
+++.+..+++|.+...+ .. ...+..++.|++++++. .+.+|.....+.+.+
T Consensus 107 ~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~~~~~l~~~l 161 (189)
T 3cng_A 107 LPHISQVYMLFRAKLLDLDFFPGIESLEVRLFGEQEIPWNDIAFRVIHDPLKRYM 161 (189)
T ss_dssp EGGGTEEEEEEEEEECCSCCCCCTTEEEEEEECTTTCCGGGBSCHHHHHHHHHHH
T ss_pred cCCCcEEEEEEEEEeCCCccCCCccceeEEEECHHHcCcccccChHHHHHHHHHH
Confidence 88888888999998754 21 12223578999999998 777776655554433
No 47
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.58 E-value=1.3e-14 Score=121.78 Aligned_cols=111 Identities=13% Similarity=0.053 Sum_probs=79.5
Q ss_pred eeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCc---
Q psy8564 210 CSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPI--- 283 (341)
Q Consensus 210 ~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~--- 283 (341)
..++++++.++|+|||.||.. +|.|+||| +|.||++ .+|+.||+.||+|++ .....+..
T Consensus 6 ~~~v~~vi~~~~~vLL~~r~~----~g~w~lPgG~ve~gEs~-----------~~aa~REl~EEtGl~~~~~~~~~~~~~ 70 (159)
T 3f6a_A 6 HFTVSVFIVCKDKVLLHLHKK----AKKMLPLGGHIEVNELP-----------EEACIREAKEEAGLNVTLYNPIDINLK 70 (159)
T ss_dssp CEEEEEEEEETTEEEEEECSS----SCCEECEEEECCTTCCH-----------HHHHHHHHHHHHCCCCEECCCCCHHHH
T ss_pred eEEEEEEEEECCEEEEEEcCC----CCeEECCccCccCCCCH-----------HHHHHHHHHHHhCCCceeccccccccc
Confidence 445666666789999999974 58999999 9999998 999999999999998 55444431
Q ss_pred -----------------EEEEeeceEEEE-EEEEEEecc-c--ccccCCCCceeeeCCCCCCCCCCHHHHHHH
Q psy8564 284 -----------------ISHKLTHLQFKI-VPCHIFLKK-C--FLKENKNNFIWYPIKKIKNSPIPAPVRKIL 335 (341)
Q Consensus 284 -----------------~~h~~~h~~~~l-~~~~~~~~~-~--~~~~~~~~~~W~~~~el~~~~~~~a~~~il 335 (341)
..|.|+..+..+ .+|.|...+ . ....+..+++|++++++.++++.+++...+
T Consensus 71 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l 143 (159)
T 3f6a_A 71 KSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLKNAHNIQENILVM 143 (159)
T ss_dssp HHHHHTTCEEECCCSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTCSSSCHHHHHH
T ss_pred ccccccccccccCccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHhhCcCCChhHHHH
Confidence 123333333333 577787644 2 212345789999999999999555555544
No 48
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.55 E-value=1e-14 Score=121.88 Aligned_cols=104 Identities=12% Similarity=0.181 Sum_probs=74.3
Q ss_pred eEEEEEE-EeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcE--
Q psy8564 211 SIIMFIV-IDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPII-- 284 (341)
Q Consensus 211 ~~~~~ii-~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~-- 284 (341)
..+++++ ..+|+|||.+|. +|+|+||| +|.||++ .+|+.||+.||+|++ .....++.+
T Consensus 22 ~~v~~ii~~~~~~vLL~~r~-----~~~w~lPgG~ve~gEs~-----------~~aa~REl~EEtGl~~~~~~~~~~~~~ 85 (153)
T 3eds_A 22 PSVAAVIKNEQGEILFQYPG-----GEYWSLPAGAIELGETP-----------EEAVVREVWEETGLKVQVKKQKGVFGG 85 (153)
T ss_dssp EEEEEEEBCTTCCEEEECC--------CBBCSEEECCTTSCH-----------HHHHHHHHHHHHCEEEEEEEEEEEECS
T ss_pred eeEEEEEEcCCCeEEEEEcC-----CCcEECCccccCCCCCH-----------HHHHHHHHHHHHCccceeeeEEEEecc
Confidence 3444444 457899999996 79999999 9999988 999999999999998 655555544
Q ss_pred ---EEEeece---EEEEEEEEEEecc-c--ccccCCCCceeeeCCCCCCCCCCHH
Q psy8564 285 ---SHKLTHL---QFKIVPCHIFLKK-C--FLKENKNNFIWYPIKKIKNSPIPAP 330 (341)
Q Consensus 285 ---~h~~~h~---~~~l~~~~~~~~~-~--~~~~~~~~~~W~~~~el~~~~~~~a 330 (341)
.|.|++. ++.+.+|.+...+ . ....+..+++|++++++.++++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~l~~~~p 140 (153)
T 3eds_A 86 KEYRYTYSNGDEVEYIVVVFECEVTSGELRSIDGESLKLQYFSLSEKPPLALPYP 140 (153)
T ss_dssp GGGEEECTTSCEEEEEEEEEEEEEEEECCC-------CEEEECGGGCCCBSSCCC
T ss_pred cceeeecCCCCeEEEEEEEEEEEecCCccccCCCcEEEEEEECHHHCchhcccCc
Confidence 7778774 4467888888654 1 1223346899999999999877644
No 49
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.55 E-value=1.3e-14 Score=121.52 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=80.2
Q ss_pred EEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEE---
Q psy8564 212 IIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIIS--- 285 (341)
Q Consensus 212 ~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~--- 285 (341)
++++++.++|+|||.||+. .|+|+||| +|.||++ .+|+.||+.||+|++ .....+..+.
T Consensus 3 ~~~~vi~~~~~vLL~~r~~----~g~W~lPgG~ve~gEs~-----------~~aa~REl~EEtGl~~~~~~~~~~~~~~~ 67 (156)
T 1k2e_A 3 VTSGVLVENGKVLLVKHKR----LGVYIYPGGHVEHNETP-----------IEAVKREFEEETGIVVEPIGFTYGIIDEN 67 (156)
T ss_dssp EEEEECEETTEEEEEECTT----TCSEECSEEECCTTCCH-----------HHHHHHHHHHHHSEEEEECCCCCCCBSSS
T ss_pred EEEEEEEECCEEEEEEEcC----CCcEECCeeecCCCCCH-----------HHHHHHHHHHHHCCcceeccceeeecccc
Confidence 4555556699999999975 58999999 9999998 999999999999998 5444432111
Q ss_pred --------------EEeec-eEEEEE-EEEEEecccccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhh
Q psy8564 286 --------------HKLTH-LQFKIV-PCHIFLKKCFLKENKNNFIWYPIKKIKNSPIPAPVRKILFQII 339 (341)
Q Consensus 286 --------------h~~~h-~~~~l~-~~~~~~~~~~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~ 339 (341)
+.|+. .++++. +|.+...+. +..+++|++++++.++++++.++++++.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~----e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 133 (156)
T 1k2e_A 68 AVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGG----DLKNGEWIDVREIDRIETFPNVRKVVSLAL 133 (156)
T ss_dssp EEECCCCSEEEEEEEECSSCEEEEEEEEEEEEEEEE----CCCSCEEEEGGGGGGSCBSTTHHHHHHHHH
T ss_pred cccccccceeeeeeecCCCCceEEEEEEEEEEecCC----cEeeeEEeCHHHHhcCCCChHHHHHHHHHH
Confidence 12322 233333 366664332 237899999999999999999999988764
No 50
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.54 E-value=9.6e-16 Score=130.28 Aligned_cols=115 Identities=10% Similarity=0.023 Sum_probs=88.3
Q ss_pred EEEEEEeCCEEEEEEeCC-CCccccccc-ccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-cc--ccccCcEE
Q psy8564 213 IMFIVIDDDYVLFQKRSN-KGIWGGLLS-FPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KN--YLILPIIS 285 (341)
Q Consensus 213 ~~~ii~~~g~vLl~kR~~-~g~~~GlWE-FPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~--~~~~~~~~ 285 (341)
.++|+..+|++||.||.. ++.++|+|+ ||| +|.||++ .+|+.||+.||+|+. .. ...+..+.
T Consensus 38 ~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~-----------~~aa~REl~EEtGl~~~~~~l~~~~~~~ 106 (171)
T 1q27_A 38 NAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETY-----------EEAFRREAREELNVEIDALSWRPLASFS 106 (171)
T ss_dssp EEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCH-----------HHHHHHHHHHHHSCTTSSSCEEEEEEEC
T ss_pred EEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCH-----------HHHHHHHHHHHHCCcccccceEEEEEEe
Confidence 344556789999999954 567899999 999 9999988 999999999999998 44 34555555
Q ss_pred -EEeeceEEEEEEEEEEeccc--ccccCCCCceeeeCCCCC--CCCCCHHHHHHHHHhh
Q psy8564 286 -HKLTHLQFKIVPCHIFLKKC--FLKENKNNFIWYPIKKIK--NSPIPAPVRKILFQII 339 (341)
Q Consensus 286 -h~~~h~~~~l~~~~~~~~~~--~~~~~~~~~~W~~~~el~--~~~~~~a~~~il~~l~ 339 (341)
|.+++.. .+++|.|...+. ....+..+++|++++++. .++++.++.++++.|.
T Consensus 107 ~~~~~~~~-~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~l~ 164 (171)
T 1q27_A 107 PFQTTLSS-FMCVYELRSDATPIFNPNDISGGEWLTPEHLLARIAAGEAAKGDLAELVR 164 (171)
T ss_dssp SSSSCCSS-EEEEEEEECCCCCCSCTTTCSCCEEECHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred ccCCCCcc-EEEEEEEEECCccccCchhhheEEEecHHHHHHHHhcCCCCchhHHHHHH
Confidence 6666655 678888887332 122334789999999999 6688888888887775
No 51
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.53 E-value=7.1e-14 Score=118.38 Aligned_cols=113 Identities=13% Similarity=0.015 Sum_probs=83.8
Q ss_pred ccceeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCc
Q psy8564 207 IKNCSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPI 283 (341)
Q Consensus 207 ~~~~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~ 283 (341)
.+...++++|+.++|++||.+|. +|.|+||| +|.||++ .+|+.||+.||+|++ .....+.
T Consensus 13 ~~~~~~~~~ii~~~~~vLL~~r~-----~g~w~lPgG~ve~gEs~-----------~~aa~REl~EEtGl~~~~~~~l~- 75 (163)
T 3f13_A 13 SDLARRATAIIEMPDGVLVTASR-----GGRYNLPGGKANRGELR-----------SQALIREIREETGLRINSMLYLF- 75 (163)
T ss_dssp SSCEEEEEEECEETTEEEEEECC--------BBCSEEECCTTCCH-----------HHHHHHHHHHHHCCCCCEEEEEE-
T ss_pred CCceEEEEEEEEeCCEEEEEEEC-----CCeEECCceeCCCCCCH-----------HHHHHHHHHHHHCcccceeEEEE-
Confidence 34456677788889999999995 58999999 9999998 999999999999998 5555442
Q ss_pred EEEEeeceEEEEEEEEEEeccccc-ccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 284 ISHKLTHLQFKIVPCHIFLKKCFL-KENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 284 ~~h~~~h~~~~l~~~~~~~~~~~~-~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
.+.+++ ...++|.|.+.+.+. ..+..+++|++ .+...+++++.++++++.+.+
T Consensus 76 -~~~~~~--~~~~~f~~~~~~~~~~~~E~~~~~W~~-~~~~~~~l~~~~~~il~~~~~ 129 (163)
T 3f13_A 76 -DHITPF--NAHKVYLCIAQGQPKPQNEIERIALVS-SPDTDMDLFVEGRAILRRYAR 129 (163)
T ss_dssp -EEECSS--EEEEEEEEEC-CCCCCCTTCCEEEEES-STTCSSCBCHHHHHHHHHHHH
T ss_pred -EEecCC--eEEEEEEEEECCcCccCCCceEEEEEC-cccccCCCCHHHHHHHHHHHH
Confidence 334444 667788887655321 12346899999 667788999999999988753
No 52
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.52 E-value=3.1e-14 Score=118.93 Aligned_cols=112 Identities=11% Similarity=0.131 Sum_probs=83.6
Q ss_pred EEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEe
Q psy8564 212 IIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKL 288 (341)
Q Consensus 212 ~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~ 288 (341)
++++++..+|+|||.||... .++|.|+||| +|.||++ .+|+.||+.||+|++ .....+..+.+.+
T Consensus 23 v~~~i~~~~~~vLl~~r~~~-~~~~~w~~PgG~ve~gE~~-----------~~aa~REl~EEtGl~~~~~~~~~~~~~~~ 90 (156)
T 3gg6_A 23 VLAVFLSEQDEVLLIQEAKR-ECRGSWYLPAGRMEPGETI-----------VEALQREVKEEAGLHCEPETLLSVEERGP 90 (156)
T ss_dssp EEEECBCTTSEEEEEECCCT-TSTTCEECSEEECCTTCCH-----------HHHHHHHHHHHHCEEEEEEEEEEEEESST
T ss_pred EEEEEEeCCCEEEEEEecCC-CCCCEEECCeeeccCCCCH-----------HHHHHHHHHHhhCceeEeeeEEEEEcCCC
Confidence 34455556899999999754 4899999999 9999988 999999999999998 6656665544322
Q ss_pred eceEEEEEEEEEEecc-c-----ccccCCCCceeeeCCCCCCCCCCHHHHHHHHHh
Q psy8564 289 THLQFKIVPCHIFLKK-C-----FLKENKNNFIWYPIKKIKNSPIPAPVRKILFQI 338 (341)
Q Consensus 289 ~h~~~~l~~~~~~~~~-~-----~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l 338 (341)
.+..++|.+...+ . ....+..+++|++++++.+.-.+.....+++..
T Consensus 91 ---~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~ 143 (156)
T 3gg6_A 91 ---SWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRAHDILHLVELA 143 (156)
T ss_dssp ---TEEEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBSCTHHHHHHHHH
T ss_pred ---CEEEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccccchhHHHHHHHH
Confidence 2345677777543 1 111344678999999999988888888877654
No 53
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.52 E-value=2.2e-14 Score=126.13 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=85.8
Q ss_pred eEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEE--
Q psy8564 211 SIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIIS-- 285 (341)
Q Consensus 211 ~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~-- 285 (341)
..+.+++.++|+|||.||. .|.|+||| +|.||++ .+|+.||+.||+|++ .....+..+.
T Consensus 71 ~~v~~vv~~~~~vLLvrr~-----~g~w~lPgG~ve~gEs~-----------~~aa~REl~EEtGl~~~~~~~l~~~~~~ 134 (206)
T 3o8s_A 71 LDTRAAIFQEDKILLVQEN-----DGLWSLPGGWCDVDQSV-----------KDNVVKEVKEEAGLDVEAQRVVAILDKH 134 (206)
T ss_dssp EEEEEEEEETTEEEEEECT-----TSCEECSEEECCTTSCH-----------HHHHHHHHHHHHCEEEEEEEEEEEEEHH
T ss_pred ccEEEEEEECCEEEEEEec-----CCeEECCeeccCCCCCH-----------HHHHHHHHHHHHCCcceeeeEEEEEecc
Confidence 3454555568999999997 78999999 9999998 999999999999998 6655555554
Q ss_pred -EEee--ceEEEEEEEEEEecc-ccc-ccCCCCceeeeCCCCCCCCCCHHHHHHHHHhh
Q psy8564 286 -HKLT--HLQFKIVPCHIFLKK-CFL-KENKNNFIWYPIKKIKNSPIPAPVRKILFQII 339 (341)
Q Consensus 286 -h~~~--h~~~~l~~~~~~~~~-~~~-~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~ 339 (341)
|.++ +.++...+|.|...+ ... ..+..+++|+++++|.++++++..+++++.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~l~~~~ 193 (206)
T 3o8s_A 135 KNNPAKSAHRVTKVFILCRLLGGEFQPNSETVASGFFSLDDLPPLYLGKNTAEQLALCL 193 (206)
T ss_dssp HHCC-----CEEEEEEEEEEEEECCCCCSSCSEEEEECTTSCCCBCTTTCCHHHHHHHH
T ss_pred ccCCCCCCceEEEEEEEEEecCCeecCCCCceEEEEEeHHHhhhccCCCchHHHHHHHH
Confidence 3333 345667788888654 221 13447899999999999999999998887764
No 54
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.51 E-value=2.7e-14 Score=118.80 Aligned_cols=117 Identities=10% Similarity=0.063 Sum_probs=86.3
Q ss_pred eeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEE
Q psy8564 210 CSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISH 286 (341)
Q Consensus 210 ~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h 286 (341)
..++++++.++|+|||.||. ...+|.|+||| +|.||++ .+|+.||+.||+|++ .....++...|
T Consensus 5 ~~~v~~ii~~~~~vLl~~r~--~~~~~~w~~PgG~ve~gEs~-----------~~aa~REl~EEtGl~~~~~~~~~~~~~ 71 (153)
T 3shd_A 5 HVTVACVVHAEGKFLVVEET--INGKALWNQPAGHLEADETL-----------VEAAARELWEETGISAQPQHFIRMHQW 71 (153)
T ss_dssp EEEEEEEEEETTEEEEEEEE--ETTEEEEECSEEECCTTCCH-----------HHHHHHHHHHHHCCCCCCCEEEEEEEE
T ss_pred ceEEEEEEEeCCEEEEEEec--CCCCCCEECCeEEeCCCCCH-----------HHHHHHHHHHHHCcccccCcEEEEEEE
Confidence 45666777889999999996 34589999999 9999998 999999999999999 66677777777
Q ss_pred EeeceE-EEEEEEEEEeccc----ccccCCCCceeeeCCCCCC--CCCCHHHHHHHHHhh
Q psy8564 287 KLTHLQ-FKIVPCHIFLKKC----FLKENKNNFIWYPIKKIKN--SPIPAPVRKILFQII 339 (341)
Q Consensus 287 ~~~h~~-~~l~~~~~~~~~~----~~~~~~~~~~W~~~~el~~--~~~~~a~~~il~~l~ 339 (341)
.+++.. ...++|.+...+. ....+..+++|++++++.. -...+..+.++..+.
T Consensus 72 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~~ 131 (153)
T 3shd_A 72 IAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQ 131 (153)
T ss_dssp CCTTSCCEEEEEEEEECSSCCCCCCCSTTCCEEEEECHHHHHTCSCBSSTHHHHHHHHHH
T ss_pred ecCCCceEEEEEEEEEccccCcCCCCcccceeeEEecHHHhhccccccCchHHHHHHHHH
Confidence 776543 4457788886541 2233447789999999921 224455556666553
No 55
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.51 E-value=1.5e-14 Score=120.63 Aligned_cols=107 Identities=9% Similarity=0.087 Sum_probs=82.7
Q ss_pred eeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEE
Q psy8564 210 CSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISH 286 (341)
Q Consensus 210 ~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h 286 (341)
...+++++.++|+|||.|| +|.|+||| +|.||++ .+|+.||+.||+|++ .....+..+.|
T Consensus 19 ~~~~~~ii~~~~~vLl~~r------~~~w~lPgG~ve~gE~~-----------~~aa~REl~EEtGl~~~~~~~~~~~~~ 81 (154)
T 2pqv_A 19 GVRATALIVQNHKLLVTKD------KGKYYTIGGAIQVNEST-----------EDAVVREVKEELGVKAQAGQLAFVVEN 81 (154)
T ss_dssp EEEEEECCEETTEEEEEEE------TTEEECEEEECBTTCCH-----------HHHHHHHHHHHHCCCEEEEEEEEEEEE
T ss_pred eEEEEEEEEECCEEEEEec------CCeEECcccCcCCCCCH-----------HHHHHHHHHHHhCCeeeeceEEEEEee
Confidence 4456666678999999999 68999999 9999988 999999999999999 76677777777
Q ss_pred Eeece----EEEEEEEEEEeccc-c----cccCCCCceeeeCCCCCCCCCCHHHHH
Q psy8564 287 KLTHL----QFKIVPCHIFLKKC-F----LKENKNNFIWYPIKKIKNSPIPAPVRK 333 (341)
Q Consensus 287 ~~~h~----~~~l~~~~~~~~~~-~----~~~~~~~~~W~~~~el~~~~~~~a~~~ 333 (341)
.|++. +...++|.+...+. . ...+..+++|++++++.++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 137 (154)
T 2pqv_A 82 RFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPVFLK 137 (154)
T ss_dssp EEEETTEEEEEEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGSCEESTTHH
T ss_pred eecCCCCcceEEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhcCcCcHHHH
Confidence 77643 23345788876441 1 111235789999999999999887765
No 56
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.50 E-value=7.1e-15 Score=129.16 Aligned_cols=124 Identities=11% Similarity=0.040 Sum_probs=81.2
Q ss_pred eeEEEEEEEeCCEEEEEEeCCCC---cccccccc-cc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccC
Q psy8564 210 CSIIMFIVIDDDYVLFQKRSNKG---IWGGLLSF-PE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILP 282 (341)
Q Consensus 210 ~~~~~~ii~~~g~vLl~kR~~~g---~~~GlWEF-Pg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~ 282 (341)
+.+.++|+.++|+||+.||+.++ .+.|.|+| || +|.||+. ...+++++|++||+.||+|++ .....++
T Consensus 68 q~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~-----~p~EtleeAa~REl~EEtGl~v~~~~~ig 142 (211)
T 3e57_A 68 QVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGA-----TPREAFLKGLEREVNEEVDVSLRELEFLG 142 (211)
T ss_dssp EEEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCS-----SHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCC-----CchhhHHHHHHHHHHHHhCCeeeccEEEE
Confidence 34566777889999999998764 37899999 99 9999961 001234899999999999998 7777777
Q ss_pred cEEEEe-eceEEEE-EEEEEEecc-cccccCCCCceeeeCCCCCCC--CCCHHHHHHHHHh
Q psy8564 283 IISHKL-THLQFKI-VPCHIFLKK-CFLKENKNNFIWYPIKKIKNS--PIPAPVRKILFQI 338 (341)
Q Consensus 283 ~~~h~~-~h~~~~l-~~~~~~~~~-~~~~~~~~~~~W~~~~el~~~--~~~~a~~~il~~l 338 (341)
.+.+.+ +...+++ .+|.|+..+ .+...+..+++|+++++|.++ .|.+-.+-+++.|
T Consensus 143 ~~~~~~~~~~~~~l~~~f~~~~~~g~~~~~E~~~~~W~~~~eL~~~~~~le~wS~lvl~~l 203 (211)
T 3e57_A 143 LINSSTTEVSRVHLGALFLGRGKFFSVKEKDLFEWELIKLEELEKFSGVMEGWSKISAAVL 203 (211)
T ss_dssp EEECCSSHHHHTEEEEEEEEEEEEEEESCTTTCEEEEEEHHHHHHHGGGCCHHHHHHHHHH
T ss_pred EEeccCCCCCeEEEEEEEEEEeCCceeCCCCeEEEEEEEHHHHHHhHhhccchhHHHHHHH
Confidence 776632 2222222 468887554 333344478999999999987 6765555555554
No 57
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=99.50 E-value=1e-13 Score=126.60 Aligned_cols=110 Identities=13% Similarity=0.196 Sum_probs=85.5
Q ss_pred EEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEe
Q psy8564 212 IIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKL 288 (341)
Q Consensus 212 ~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~ 288 (341)
++++++.++|+|||.||...+ .|+|+||| +|.|||+ ++|+.||+.||+|++ .....++...|.|
T Consensus 142 ~viv~v~~~~~vLL~rr~~~~--~g~w~lPgG~vE~GEt~-----------eeAa~REv~EEtGl~v~~~~~~~~~~~~~ 208 (269)
T 1vk6_A 142 CIIVAIRRDDSILLAQHTRHR--NGVHTVLAGFVEVGETL-----------EQAVAREVMEESGIKVKNLRYVTSQPWPF 208 (269)
T ss_dssp EEEEEEEETTEEEEEEETTTC--SSCCBCEEEECCTTCCH-----------HHHHHHHHHHHHCCEEEEEEEEEEEEEET
T ss_pred EEEEEEEeCCEEEEEEecCCC--CCcEECCcCcCCCCCCH-----------HHHHHHHHHHHhCceeeeEEEEEEEecCC
Confidence 445566778999999997654 79999999 9999998 999999999999999 7778888888888
Q ss_pred eceEEEEEEEEEEecc-c--ccccCCCCceeeeCCCCCCCCCCHHH-HHHHH
Q psy8564 289 THLQFKIVPCHIFLKK-C--FLKENKNNFIWYPIKKIKNSPIPAPV-RKILF 336 (341)
Q Consensus 289 ~h~~~~l~~~~~~~~~-~--~~~~~~~~~~W~~~~el~~~~~~~a~-~~il~ 336 (341)
+|. .+.+|.+.+.+ . ....+..+.+|++++|+..++.+.+. +.+++
T Consensus 209 ~~~--~~~~f~a~~~~~~~~~~~~E~~~~~W~~~~el~~l~~~~si~~~li~ 258 (269)
T 1vk6_A 209 PQS--LMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIE 258 (269)
T ss_dssp TEE--EEEEEEEEEEECCCCCCTTTEEEEEEEETTSCCSCCCTTSHHHHHHH
T ss_pred CCE--EEEEEEEEECCCCcCCCCcceEEEEEEEHHHhhhcccCcHHHHHHHH
Confidence 875 56778887654 2 11222357899999999999887643 33443
No 58
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.48 E-value=4e-14 Score=117.34 Aligned_cols=107 Identities=9% Similarity=0.032 Sum_probs=80.7
Q ss_pred eCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-cccc-ccCcE------EEEe
Q psy8564 219 DDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYL-ILPII------SHKL 288 (341)
Q Consensus 219 ~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~-~~~~~------~h~~ 288 (341)
.+++|||.||..+ |.|+||| +|.||++ .+|+.||+.||+|++ .... .+..+ .|.|
T Consensus 18 ~~~~vLl~~r~~~----g~w~~PgG~ve~gE~~-----------~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 82 (149)
T 3son_A 18 ANYQFGVLHRTDA----DVWQFVAGGGEDEEAI-----------SETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSF 82 (149)
T ss_dssp SSEEEEEEEESSS----SCEECEEEECCTTCCH-----------HHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCS
T ss_pred CCeEEEEEEEcCC----CCEeCCccccCCCCCH-----------HHHHHHHHHHHhCCCcccceEEEEeeecccceeecc
Confidence 4579999999764 9999999 9999998 999999999999998 4421 11111 1122
Q ss_pred ec-eEEEEEEEEEEec--c-ccc-ccCCCCceeeeCCCCCCCCCCHHHHHHHHHhhc
Q psy8564 289 TH-LQFKIVPCHIFLK--K-CFL-KENKNNFIWYPIKKIKNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 289 ~h-~~~~l~~~~~~~~--~-~~~-~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 340 (341)
++ .+..+++|.+... . .+. ..++.+++|++++++.++.+.+.++.+++.+.+
T Consensus 83 ~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 139 (149)
T 3son_A 83 NKPYVVPEYCFAIDLTSCSYQVTLSLEHSELRWVSYESAIQLLEWDSNKTALYELNE 139 (149)
T ss_dssp SSCSEEEEEEEEEECTTTGGGCCCCTTEEEEEEECHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCceEeEEEEEEEEcCCCCCcccCCCceeeEEEeCHHHHHHHhcCHHHHHHHHHHHH
Confidence 22 4667789999976 2 221 234467899999999999999999999988753
No 59
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.47 E-value=1.6e-13 Score=112.35 Aligned_cols=102 Identities=10% Similarity=0.130 Sum_probs=75.5
Q ss_pred eCCE--EEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEeec---
Q psy8564 219 DDDY--VLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKLTH--- 290 (341)
Q Consensus 219 ~~g~--vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~~h--- 290 (341)
.+|+ +||.||...+ +.|+||| +|.||++ .+|+.||+.||+|+. .....+ +.|++
T Consensus 21 ~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gE~~-----------~~aa~RE~~EEtGl~~~~~~~~----~~~~~~~~ 82 (139)
T 2yyh_A 21 GENFKGIVLIERKYPP---VGLALPGGFVEVGERV-----------EEAAAREMREETGLEVRLHKLM----GVYSDPER 82 (139)
T ss_dssp TTEEEEEEEEEECSSS---CSEECCEEECCTTCCH-----------HHHHHHHHHHHHCCCCEEEEEE----EEECCTTS
T ss_pred CCCcEEEEEEEecCCC---CcEECccccCCCCCCH-----------HHHHHHHHHHHHCCCcccceEE----EEECCCCc
Confidence 3788 9999997643 3399999 9999988 999999999999998 544433 34443
Q ss_pred ---eEEEEEEEEEEeccccc-ccCCCCceeeeCCCCC--CCCCCHHHHHHHHHhhc
Q psy8564 291 ---LQFKIVPCHIFLKKCFL-KENKNNFIWYPIKKIK--NSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 291 ---~~~~l~~~~~~~~~~~~-~~~~~~~~W~~~~el~--~~~~~~a~~~il~~l~~ 340 (341)
.++.+++|.|...+.+. ..+..+++|++++++. ++.++ .+++++.+.+
T Consensus 83 ~~~~~~~~~~f~~~~~~~~~~~~e~~~~~W~~~~el~~~~l~~~--~~~~l~~~l~ 136 (139)
T 2yyh_A 83 DPRAHVVSVVWIGDAQGEPKAGSDAKKVKVYRLEEIPLDKLVFD--HKKIILDFLK 136 (139)
T ss_dssp CTTSCEEEEEEEEEEESCCCCCTTEEEEEEECTTSCCGGGBCTT--HHHHHHHHHH
T ss_pred CCCceEEEEEEEEecCCccCCCCCcceEEEEEHHHCCHhhcCCC--HHHHHHHHHh
Confidence 46777888888744221 2223578999999999 77776 6778776643
No 60
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.45 E-value=3.9e-14 Score=122.62 Aligned_cols=117 Identities=9% Similarity=0.061 Sum_probs=88.2
Q ss_pred EEEEEEeCCEEEEEEeCC-CCcccccccc-cc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccc-cccCcEEE
Q psy8564 213 IMFIVIDDDYVLFQKRSN-KGIWGGLLSF-PE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNY-LILPIISH 286 (341)
Q Consensus 213 ~~~ii~~~g~vLl~kR~~-~g~~~GlWEF-Pg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~-~~~~~~~h 286 (341)
.++|+..+|++||.||.. ++.++|+|+| || +|.||++ ++|+.||+.||+|++ ... ..++.+.|
T Consensus 36 ~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~-----------~~aa~REl~EEtGl~~~~~~~~~~~~~~ 104 (190)
T 1hzt_A 36 SSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN-----------EDAVIRRCRYELGVEITPPESIYPDFRY 104 (190)
T ss_dssp EEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCH-----------HHHHHHHHHHHHCCCBSCCEEEETTCEE
T ss_pred EEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCH-----------HHHHHHHHHHHHCCCchhhheeeeeEEE
Confidence 344445579999999964 4578999999 87 9999998 999999999999999 655 66666666
Q ss_pred Ee--ec---eEEEEEEEEEEecccc--cccCCCCceeeeCCCCCCC------CCCHHHHHHHHHhhc
Q psy8564 287 KL--TH---LQFKIVPCHIFLKKCF--LKENKNNFIWYPIKKIKNS------PIPAPVRKILFQIIQ 340 (341)
Q Consensus 287 ~~--~h---~~~~l~~~~~~~~~~~--~~~~~~~~~W~~~~el~~~------~~~~a~~~il~~l~~ 340 (341)
.+ ++ .+..+++|.+.+.+.. ...+..+++|++++++.++ .|.+..+.+++.+..
T Consensus 105 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~p~~~~~~~~~~~ 171 (190)
T 1hzt_A 105 RATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREA 171 (190)
T ss_dssp EEECTTSCEEEEECCEEEEEBCSCCCCCTTTEEEEEEECHHHHHHHHHHCGGGBCHHHHHHHHSHHH
T ss_pred EeeCCCCCcceEEEEEEEEecCCCCcCCccceeeEEEecHHHHHHHHHcChhhcCchHHHHHHHHHH
Confidence 43 32 2566788888865421 1223357899999999764 499999999887753
No 61
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.42 E-value=2.5e-13 Score=119.26 Aligned_cols=114 Identities=12% Similarity=0.157 Sum_probs=82.6
Q ss_pred eEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEE
Q psy8564 211 SIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHK 287 (341)
Q Consensus 211 ~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~ 287 (341)
..+.+++.++|+|||.||.. .|.|+||| +|.||++ .+|+.||+.||+|++ .....+....+.
T Consensus 69 ~~v~~vv~~~~~vLLv~r~~----~g~w~lPgG~ve~gEs~-----------~~aa~REl~EEtGl~v~~~~~l~~~~~~ 133 (205)
T 3q1p_A 69 VDIRAVVFQNEKLLFVKEKS----DGKWALPGGWADVGYTP-----------TEVAAKEVFEETGYEVDHFKLLAIFDKE 133 (205)
T ss_dssp EEEEEEEEETTEEEEEEC-------CCEECSEEECCTTCCH-----------HHHHHHHHHHHHSEEEEEEEEEEEEEHH
T ss_pred ceEEEEEEECCEEEEEEEcC----CCcEECCcCccCCCCCH-----------HHHHHHHHHHHHCCccccceEEEEEecc
Confidence 34444555689999999973 67999999 9999998 999999999999998 655555443322
Q ss_pred e-----eceEEEEEEEEEEecc-cc-cccCCCCceeeeCCCCCCCCCCHHHHHHHHHhh
Q psy8564 288 L-----THLQFKIVPCHIFLKK-CF-LKENKNNFIWYPIKKIKNSPIPAPVRKILFQII 339 (341)
Q Consensus 288 ~-----~h~~~~l~~~~~~~~~-~~-~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~ 339 (341)
+ ...++...+|.|...+ .. ...+..++.|+++++|.++.+.+.+..+++.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~i~~~~ 192 (205)
T 3q1p_A 134 KHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEFFGENELPNLSIARNTEDQIKEMF 192 (205)
T ss_dssp HHSCCCCSSCEEEEEEEEEEEEECCCCCTTSCCEEEECTTSCCCBCTTTCCHHHHHHHH
T ss_pred ccCCCCCCceEEEEEEEEEecCCccCCCCcceEEEEEeHHHhhhcCCCccHHHHHHHHH
Confidence 1 1235566778887644 21 123447899999999999999998888877653
No 62
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.40 E-value=2.8e-13 Score=116.95 Aligned_cols=109 Identities=9% Similarity=0.052 Sum_probs=79.6
Q ss_pred CCEEEEEEeCC------CCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEee-
Q psy8564 220 DDYVLFQKRSN------KGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKLT- 289 (341)
Q Consensus 220 ~g~vLl~kR~~------~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~~- 289 (341)
+++|||.||.. .+..+|.|+||| +|.||++ .+|++||+.||+|++ .....++.+.+.+.
T Consensus 45 ~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~-----------~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~ 113 (187)
T 3i9x_A 45 TLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESA-----------EQAAERELEEETSLTDIPLIPFGVFDKPGRD 113 (187)
T ss_dssp EEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCH-----------HHHHHHHHHHHHCCCSCCCEEEEEECCTTSS
T ss_pred CCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCH-----------HHHHHHHHHHHHCCCCcceEEEEEEcCCccC
Confidence 46899999953 367899999999 9999998 999999999999998 66555554443321
Q ss_pred -ceEEEEEEEEEEecc-----cccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhh
Q psy8564 290 -HLQFKIVPCHIFLKK-----CFLKENKNNFIWYPIKKIKNSPIPAPVRKILFQII 339 (341)
Q Consensus 290 -h~~~~l~~~~~~~~~-----~~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~ 339 (341)
+..+...+|.+.... .....+..+++|++++++.++++++.++.+++...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~~~il~~a~ 169 (187)
T 3i9x_A 114 PRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFDHLDMLKKAF 169 (187)
T ss_dssp TTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTTHHHHHHHHH
T ss_pred CCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCccHHHHHHHHH
Confidence 112333455544332 11223447899999999999999999999988653
No 63
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.39 E-value=3.9e-13 Score=126.55 Aligned_cols=119 Identities=14% Similarity=0.129 Sum_probs=86.9
Q ss_pred eeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcE--
Q psy8564 210 CSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPII-- 284 (341)
Q Consensus 210 ~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~-- 284 (341)
...+.+++.++|+|||.||... ..+|+|+||| +|.||++ ++|+.||+.||+|++ .....++.+
T Consensus 203 ~~~v~~vi~~~~~vLL~~r~~~-~~~g~w~lPgG~ve~gE~~-----------~~aa~REl~EEtGl~~~~~~~~~~~~~ 270 (341)
T 2qjo_A 203 FITTDAVVVQAGHVLMVRRQAK-PGLGLIALPGGFIKQNETL-----------VEGMLRELKEETRLKVPLPVLRGSIVD 270 (341)
T ss_dssp EEEEEEEEEETTEEEEEECCSS-SSTTCEECSEEECCTTSCH-----------HHHHHHHHHHHHCCSSCHHHHHHTEEE
T ss_pred ceEEEEEEEeCCEEEEEEecCC-CCCCeEECCCCcCCCCCCH-----------HHHHHHHHhhhhCCccccccccccccc
Confidence 4556666668999999999753 4589999999 9999998 999999999999998 554444322
Q ss_pred EEEee--c----eEEEEEEEEEEecc-c----ccccCCCCceeeeCCCCCCC--CCCHHHHHHHHHhhc
Q psy8564 285 SHKLT--H----LQFKIVPCHIFLKK-C----FLKENKNNFIWYPIKKIKNS--PIPAPVRKILFQIIQ 340 (341)
Q Consensus 285 ~h~~~--h----~~~~l~~~~~~~~~-~----~~~~~~~~~~W~~~~el~~~--~~~~a~~~il~~l~~ 340 (341)
.+.|+ + .+..+++|.+...+ . ....+..+++|++++++.++ ++++.++++++.+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~il~~~~~ 339 (341)
T 2qjo_A 271 SHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYEDHFQIIQHFVS 339 (341)
T ss_dssp EEEECCTTSCTTSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHTGGGBCTTHHHHHHHHC-
T ss_pred eEEEeCCCCCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhhhhhhhchHHHHHHHHHHh
Confidence 34443 2 23556778877543 2 11233468999999999998 899999999998754
No 64
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.37 E-value=9.6e-14 Score=116.53 Aligned_cols=116 Identities=7% Similarity=0.063 Sum_probs=79.5
Q ss_pred eEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccC--cEE
Q psy8564 211 SIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILP--IIS 285 (341)
Q Consensus 211 ~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~--~~~ 285 (341)
.+.++|+..+|+|||.||.. .+|+|+||| +|.||++ ++|+.||+.||+|++ ....... .+.
T Consensus 16 ~v~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gE~~-----------~~aa~RE~~EEtGl~~~~~~~~~~~~~~ 81 (165)
T 1f3y_A 16 NVGICLMNNDKKIFAASRLD---IPDAWQMPQGGIDEGEDP-----------RNAAIRELREETGVTSAEVIAEVPYWLT 81 (165)
T ss_dssp EEEEEEECTTSCEEEEEETT---EEEEEECCEEECCTTCCH-----------HHHHHHHHHHHHCCCSEEEEEECSSCCB
T ss_pred eEEEEEECCCCcEEEEecCC---CCCcEECCeeccCCCCCH-----------HHHHHHHHHHhhCCChhhhhccccccee
Confidence 34455666789999999974 359999999 9999988 999999999999997 3221111 144
Q ss_pred EEeeceE--------------EEEEEEEEEeccc---cc-------ccCCCCceeeeCCCCCCCCCC---HHHHHHHHHh
Q psy8564 286 HKLTHLQ--------------FKIVPCHIFLKKC---FL-------KENKNNFIWYPIKKIKNSPIP---APVRKILFQI 338 (341)
Q Consensus 286 h~~~h~~--------------~~l~~~~~~~~~~---~~-------~~~~~~~~W~~~~el~~~~~~---~a~~~il~~l 338 (341)
|.|++.. ...++|.+...+. .. ..+..+++|++++++.++.++ +..+++++.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~l 161 (165)
T 1f3y_A 82 YDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVF 161 (165)
T ss_dssp CCCCHHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGGGHHHHHHHHHHH
T ss_pred eecCccccccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhhhhHHHHHHHHHHh
Confidence 5555431 1346677765431 11 123367899999999997766 6666777666
Q ss_pred hc
Q psy8564 339 IQ 340 (341)
Q Consensus 339 ~~ 340 (341)
..
T Consensus 162 ~~ 163 (165)
T 1f3y_A 162 AP 163 (165)
T ss_dssp GG
T ss_pred hh
Confidence 53
No 65
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.37 E-value=7.7e-13 Score=125.21 Aligned_cols=119 Identities=12% Similarity=0.129 Sum_probs=87.4
Q ss_pred eeEEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCc--E
Q psy8564 210 CSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPI--I 284 (341)
Q Consensus 210 ~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~--~ 284 (341)
...+.+++.++|+|||.||... ..+|+|+||| +|.||++ ++|+.||+.||+|++ .....++. .
T Consensus 208 ~~~v~~vv~~~~~vLL~~r~~~-~~~g~w~lPgG~ve~gEt~-----------~~aa~REl~EEtGl~v~~~~~~~~~~~ 275 (352)
T 2qjt_B 208 FVTVDALVIVNDHILMVQRKAH-PGKDLWALPGGFLECDETI-----------AQAIIRELFEETNINLTHEQLAIAKRC 275 (352)
T ss_dssp EEEEEEEEEETTEEEEEEESSS-SSTTCEECSEEECCTTSCH-----------HHHHHHHHHHHHCCSCCHHHHHHHEEE
T ss_pred ceEEEEEEEECCEEEEEEEcCC-CCCCeEECCCCcCCCCCCH-----------HHHHHHHHHHhhCCCcccchhcceeee
Confidence 4456666668999999999764 3589999999 9999998 999999999999998 54333221 2
Q ss_pred EEEeec------eEEEEEEEEEEecc-c--c---cccCCCCceeeeC-CCCCCC--CCCHHHHHHHHHhhc
Q psy8564 285 SHKLTH------LQFKIVPCHIFLKK-C--F---LKENKNNFIWYPI-KKIKNS--PIPAPVRKILFQIIQ 340 (341)
Q Consensus 285 ~h~~~h------~~~~l~~~~~~~~~-~--~---~~~~~~~~~W~~~-~el~~~--~~~~a~~~il~~l~~ 340 (341)
.+.|++ .++.+++|.+.+.. . + ...+..+++|+++ +++.++ ++++.++++++.+.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~~~~il~~~~~ 346 (352)
T 2qjt_B 276 EKVFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLEDHYQIITILLE 346 (352)
T ss_dssp EEEECCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHHHHHH
T ss_pred eEEecCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChhHHHHHHHHHH
Confidence 344432 34566777777543 2 1 1223357899999 999987 899999999987753
No 66
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.36 E-value=1.1e-13 Score=118.78 Aligned_cols=101 Identities=10% Similarity=0.073 Sum_probs=78.8
Q ss_pred EEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEee
Q psy8564 213 IMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKLT 289 (341)
Q Consensus 213 ~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~~ 289 (341)
+++++..+|++||.+|...+..+|+|+||| +|.||++ .+|+.||+.||+|+. .....++.+.|..+
T Consensus 45 ~v~i~~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~-----------~~aa~REl~EEtGl~~~~~~~l~~~~~~~~ 113 (182)
T 2yvp_A 45 FVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETP-----------EAAARRELREEVGAEAETLIPLPSFHPQPS 113 (182)
T ss_dssp EEEEBCTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCH-----------HHHHHHHHHHHHCEECSCEEECCCBCSCTT
T ss_pred EEEEEcCCCEEEEEEeccCCCCCcEEEeccccCCCCcCH-----------HHHHHHHHHHHhCCCcccEEEEEEEeCCCC
Confidence 344445689999999987777899999999 9999988 999999999999998 66677777766666
Q ss_pred ceEEEEEEEEEEecc---c--ccccCCCCceeeeCCCCCC
Q psy8564 290 HLQFKIVPCHIFLKK---C--FLKENKNNFIWYPIKKIKN 324 (341)
Q Consensus 290 h~~~~l~~~~~~~~~---~--~~~~~~~~~~W~~~~el~~ 324 (341)
+.+..+++|.+.... . ....+..++.|++++++.+
T Consensus 114 ~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 153 (182)
T 2yvp_A 114 FTAVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYA 153 (182)
T ss_dssp TBCCEEEEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHH
T ss_pred ccccEEEEEEEeccccCCCCCCCCCceEEEEEEEHHHHHH
Confidence 666778889887432 1 1223346789999998865
No 67
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.35 E-value=1.6e-12 Score=108.58 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=74.9
Q ss_pred CCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEe----eceE
Q psy8564 220 DDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKL----THLQ 292 (341)
Q Consensus 220 ~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~----~h~~ 292 (341)
+++|||.||..+ .|.|+||| +|.|||+ .+|+.||+.||+|++ .....+..+.+.+ ....
T Consensus 23 ~~e~LL~~r~~~---~~~W~lPgG~ve~gEt~-----------~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 88 (155)
T 3u53_A 23 AIEFLLLQASDG---IHHWTPPKGHVEPGEDD-----------LETALRETQEEAGIEAGQLTIIEGFKRELNYVARNKP 88 (155)
T ss_dssp SEEEEEEEESSS---SCCEECSEEECCSSCCH-----------HHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEE
T ss_pred CcEEEEEEecCC---CCCEECCeeeccCCCCH-----------HHHHHHHHHHHHCCccccceeeeeEeeeeecCCCcce
Confidence 468999999765 37899999 9999998 999999999999998 5544444433322 2334
Q ss_pred EEEEEEEEEecc---cc-cccCCCCceeeeCCCCCCCCCCHHHHHHHHHh
Q psy8564 293 FKIVPCHIFLKK---CF-LKENKNNFIWYPIKKIKNSPIPAPVRKILFQI 338 (341)
Q Consensus 293 ~~l~~~~~~~~~---~~-~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l 338 (341)
....+|.+...+ .. ...++.+++|++++|+.++...+.++.+|++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~ea~~~~~~~~~~~~L~~a 138 (155)
T 3u53_A 89 KTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAALQEG 138 (155)
T ss_dssp EEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHHCSHHHHHHHHHH
T ss_pred eEEEEEEEEEeccCCccCCCcceeEEEEeEHHHHHHHcCCHHHHHHHHHH
Confidence 455566666543 11 22234678999999988776667778887654
No 68
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.32 E-value=9.1e-13 Score=111.85 Aligned_cols=102 Identities=11% Similarity=0.059 Sum_probs=72.5
Q ss_pred EEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCcccccccCcEEEEee
Q psy8564 212 IIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFIKNYLILPIISHKLT 289 (341)
Q Consensus 212 ~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~~~~~~~~~~~h~~~ 289 (341)
++++++.++|++||.+|...+..+|+|+||| +|.||++ .+|+.||+.||+|+......++.+.|..+
T Consensus 36 ~v~vii~~~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~-----------~~aa~REl~EEtGl~~~~~~l~~~~~~~~ 104 (170)
T 1v8y_A 36 AVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDP-----------LEAARRELAEQTGLSGDLTYLFSYFVSPG 104 (170)
T ss_dssp EEEEEEEETTEEEEEECCBTTTTBCCBBCSEEECCTTCCH-----------HHHHHHHHHHHHSEEEEEEEEEEEESCTT
T ss_pred eEEEEEEECCEEEEEEEEeCCCCCCEEECCccccCCCCCH-----------HHHHHHHHHHHHCCCcCceeeEEEecCCC
Confidence 4544544599999999876677899999999 9999988 99999999999998312234444444445
Q ss_pred ceEEEEEEEEEEecc-c---ccccCCCCceeeeCCCCCC
Q psy8564 290 HLQFKIVPCHIFLKK-C---FLKENKNNFIWYPIKKIKN 324 (341)
Q Consensus 290 h~~~~l~~~~~~~~~-~---~~~~~~~~~~W~~~~el~~ 324 (341)
+.+..+++|.+...+ . ....+..++.|++++++.+
T Consensus 105 ~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 143 (170)
T 1v8y_A 105 FTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALE 143 (170)
T ss_dssp TBCCEEEEEEEEEEEECC--------CEEEEECHHHHHH
T ss_pred ccccEEEEEEEEeccccCCCCCCCceEEEEEEEHHHHHH
Confidence 556677888887543 1 1223347899999998865
No 69
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.31 E-value=5.9e-13 Score=110.08 Aligned_cols=101 Identities=6% Similarity=0.059 Sum_probs=67.1
Q ss_pred EEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEee
Q psy8564 213 IMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKLT 289 (341)
Q Consensus 213 ~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~~ 289 (341)
+++++..+|++||.++...+..+|+|+||| +|.||++ ++|+.||+.||+|++ .....++.+.+..+
T Consensus 9 ~vi~~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~-----------~~aa~REl~EEtGl~~~~~~~l~~~~~~~~ 77 (145)
T 2w4e_A 9 FILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDL-----------GAAAARELLEEVGGAASEWVPLPGFYPQPS 77 (145)
T ss_dssp EEEEEETTSEEEEEEEEETTTTEEEEECEEEECCTTCCH-----------HHHHHHHHHHHHCEECSEEEECCCBBSCTT
T ss_pred EEEEEcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCH-----------HHHHHHHHHHhhCCccCeEEEEecCcCCCC
Confidence 334445678997754322334578999999 9999998 999999999999998 65556665433333
Q ss_pred ceEEEEEEEEEEe-cc-c--ccccCCCCceeeeCCCCCC
Q psy8564 290 HLQFKIVPCHIFL-KK-C--FLKENKNNFIWYPIKKIKN 324 (341)
Q Consensus 290 h~~~~l~~~~~~~-~~-~--~~~~~~~~~~W~~~~el~~ 324 (341)
+....+++|.+.. .. . ....+..+++|++++++.+
T Consensus 78 ~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 116 (145)
T 2w4e_A 78 ISGVVFYPLLALGVTLGAAQLEDTETIERVVLPLAEVYR 116 (145)
T ss_dssp TCCCEEEEEEEEEEEEC--------CEEEEEEEHHHHHH
T ss_pred ccCceEEEEEEEecccCCCCCCCCCeEEEEEEeHHHHHH
Confidence 3344567777763 21 1 1223346789999998865
No 70
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.31 E-value=1.8e-12 Score=113.15 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=77.0
Q ss_pred EEEEEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEe
Q psy8564 212 IIMFIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKL 288 (341)
Q Consensus 212 ~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~ 288 (341)
++++++.++++|||.+|...+..+|+|+||| +|.||++ ++|+.||+.||+|+. .....++.+.+..
T Consensus 51 av~vl~~~~~~vLLvrq~r~~~~~~~welPgG~ve~gEs~-----------~~aA~REl~EEtGl~~~~~~~l~~~~~~~ 119 (198)
T 1vhz_A 51 AVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESV-----------YEAANRELKEEVGFGANDLTFLKKLSMAP 119 (198)
T ss_dssp EEEEEEEETTEEEEEEEEETTTTEEEEECEEEECCTTCCH-----------HHHHHHHHHHHHSEEEEEEEEEEEEECCT
T ss_pred EEEEEEEECCEEEEEEcccCCCCCcEEEeCcccCCCCcCH-----------HHHHHHHHHHHHCCCcCceEEEEEEeCCC
Confidence 4555545566999998766667799999999 9999998 999999999999998 6666666666554
Q ss_pred eceEEEEEEEEEEecc--c--ccccCCCCceeeeCCCCCCCC
Q psy8564 289 THLQFKIVPCHIFLKK--C--FLKENKNNFIWYPIKKIKNSP 326 (341)
Q Consensus 289 ~h~~~~l~~~~~~~~~--~--~~~~~~~~~~W~~~~el~~~~ 326 (341)
......+++|.+.... . ..+.+..+..|++++++.++-
T Consensus 120 ~~~~~~~~~f~a~~~~~~~~~~~~~E~~~~~w~~~~el~~~~ 161 (198)
T 1vhz_A 120 SYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLL 161 (198)
T ss_dssp TTCCCEEEEEEEEEEEECCCCCCCSSCCCEEEEEGGGGGGGG
T ss_pred CccCcEEEEEEEEeCCcccCCCCCCceEEEEEEEHHHHHHHH
Confidence 4445567788887432 1 122334678999999997643
No 71
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.30 E-value=2.8e-12 Score=115.36 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=81.0
Q ss_pred CEEEEEEeCCCCcccccccccc--ccc--ccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEe--eceEE
Q psy8564 221 DYVLFQKRSNKGIWGGLLSFPE--WIL--KDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKL--THLQF 293 (341)
Q Consensus 221 g~vLl~kR~~~g~~~GlWEFPg--vE~--~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~--~h~~~ 293 (341)
++|||.||. ...++|.|+||| +|. ||++ .+|+.||+.||+|++ ...+.+..+.+.. +..++
T Consensus 37 ~~vLLv~R~-~~~~~g~W~lPGG~ve~~~gEs~-----------~~AA~REl~EEtGl~~~~~~~l~~~~~~~r~~~~~~ 104 (240)
T 3gz5_A 37 LKVLLVQRS-NHPFLGLWGLPGGFIDETCDESL-----------EQTVLRKLAEKTAVVPPYIEQLCTVGNNSRDARGWS 104 (240)
T ss_dssp EEEEEEECC-SSSSTTCEECSEEECCTTTCSBH-----------HHHHHHHHHHHHSSCCSEEEEEEEEEESSSSTTSCE
T ss_pred cEEEEEECc-CCCCCCCEECCccccCCCCCcCH-----------HHHHHHHHHHHHCCCCCceeeEEEeCCCccCCCceE
Confidence 599999997 456799999999 999 9988 999999999999998 6666665555532 22345
Q ss_pred EEEEEEEEeccc---ccccCCCCceeeeCCCCCCCCCCHHHHHHHHHh
Q psy8564 294 KIVPCHIFLKKC---FLKENKNNFIWYPIKKIKNSPIPAPVRKILFQI 338 (341)
Q Consensus 294 ~l~~~~~~~~~~---~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l 338 (341)
...+|.+.+... ....+..+..|++++++.+.+++..+..|++..
T Consensus 105 ~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~~~l~~dh~~il~~a 152 (240)
T 3gz5_A 105 VTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQA 152 (240)
T ss_dssp EEEEEEEECCHHHHHHHHTTCTTEEEEEHHHHTTSCCSTTHHHHHHHH
T ss_pred EEEEEEEEecccccCCCCCcccceEEecHHHcccCCcchhHHHHHHHH
Confidence 556677765441 122344789999999999888888888888754
No 72
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.29 E-value=3.3e-12 Score=113.81 Aligned_cols=103 Identities=10% Similarity=0.010 Sum_probs=73.3
Q ss_pred CCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEee--ceEEE
Q psy8564 220 DDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKLT--HLQFK 294 (341)
Q Consensus 220 ~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~~--h~~~~ 294 (341)
+++|||.||.. ...+|.|+||| +|.||++ .+|+.||+.||+|++ ...+.+..+.+.+. ..++.
T Consensus 27 ~~~vLLv~r~~-~~~~g~w~lPGG~ve~gEs~-----------~~Aa~REl~EEtGl~~~~~~~l~~~~~~~r~~~~~~v 94 (226)
T 2fb1_A 27 EISLLLLKRNF-EPAMGEWSLMGGFVQKDESV-----------DDAAKRVLAELTGLENVYMEQVGAFGAIDRDPGERVV 94 (226)
T ss_dssp EEEEEEEECSS-SSSTTCEECEEEECCTTSCH-----------HHHHHHHHHHHHCCCSCEEEEEEEECCTTSSSSSCEE
T ss_pred CCEEEEEECcC-CCCCCCEECCeeccCCCCCH-----------HHHHHHHHHHHHCCCCCceEEEEEeCCCCcCCCceEE
Confidence 57999999975 46789999999 9999988 999999999999998 55555554433221 12333
Q ss_pred EEEEEEEeccc-c--cccCCCCceeeeCCCCCCCCCCHHHHHHHH
Q psy8564 295 IVPCHIFLKKC-F--LKENKNNFIWYPIKKIKNSPIPAPVRKILF 336 (341)
Q Consensus 295 l~~~~~~~~~~-~--~~~~~~~~~W~~~~el~~~~~~~a~~~il~ 336 (341)
..+|.+.+... . ...+..+..|++++++.++.+.. ..|++
T Consensus 95 ~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~l~~dh--~~il~ 137 (226)
T 2fb1_A 95 SIAYYALININEYDRELVQKHNAYWVNINELPALIFDH--PEMVD 137 (226)
T ss_dssp EEEEEEECCTTSSCHHHHHHTTEEEEETTSCCCBSTTH--HHHHH
T ss_pred EEEEEEEecCcccccCCccccceEEEEHHHhhhccCCH--HHHHH
Confidence 34677765441 1 11223789999999999888763 45544
No 73
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.29 E-value=4.5e-12 Score=110.27 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=72.7
Q ss_pred EEEEEEEeCC-EEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-cc-c-cccCcEE
Q psy8564 212 IIMFIVIDDD-YVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KN-Y-LILPIIS 285 (341)
Q Consensus 212 ~~~~ii~~~g-~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~-~-~~~~~~~ 285 (341)
+.++|+..+| +|||.+|+. .|.|+||| +|.||++ .+|++||+.||+|++ .. . .....+.
T Consensus 48 ~~~vv~~~~~~~vLL~~r~~----~g~w~lPgG~ve~gEs~-----------~eaa~REl~EEtGl~~~~~~~~~~~~~~ 112 (197)
T 3fcm_A 48 SSAFAVNKERNKFLMIHHNI----YNSWAWTGGHSDNEKDQ-----------LKVAIKELKEETGVKNPTPLLDKAFALD 112 (197)
T ss_dssp EEEEEECTTSCEEEEEEETT----TTEEECEEEECTTCCBH-----------HHHHHHHHHHHHCCSSCEESCSSCSEEE
T ss_pred EEEEEEECCCCEEEEEEecC----CCCEECCccccCCCCCH-----------HHHHHHHHHHHHCCCcccccCCCceEEE
Confidence 3444444454 999999973 46999999 9999998 999999999999996 22 1 1121222
Q ss_pred -EEee-----------ceEEEEEEEEEEecc-c---ccccCCCCceeeeCCCCCCCCCCHHHHHHHHHhh
Q psy8564 286 -HKLT-----------HLQFKIVPCHIFLKK-C---FLKENKNNFIWYPIKKIKNSPIPAPVRKILFQII 339 (341)
Q Consensus 286 -h~~~-----------h~~~~l~~~~~~~~~-~---~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~ 339 (341)
|..+ |.++. .+|.+.... . ....+..+++|++++++.++...+.++++++++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~ 181 (197)
T 3fcm_A 113 VLTVNGHIKRGKYVSSHLHLN-LTYLIECSEDETLMLKEDENSGVMWIPFNEISKYCSEPHMIPIYEKLI 181 (197)
T ss_dssp EEEECCEEETTEEECCEEEEE-EEEEEECCTTSCCCCCC----CEEEEEGGGHHHHCCCGGGHHHHHHHH
T ss_pred EeeecCccccCcccCCceeEE-EEEEEEeCCCcccCCCcccccceEEccHHHHHhhcCCHHHHHHHHHHH
Confidence 2221 22221 345555433 1 1223447899999999999888888888777654
No 74
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.27 E-value=3.6e-12 Score=112.43 Aligned_cols=108 Identities=15% Similarity=0.084 Sum_probs=78.9
Q ss_pred EEEeCCEEEEEEeCCCCcccccccccc--ccccc-chhhhccchhhhhHHHHHHHHHHhcCCc-ccc-----cccCcEEE
Q psy8564 216 IVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKD-KIINFVDNNLKNLIELEIKKFISSFGFI-KNY-----LILPIISH 286 (341)
Q Consensus 216 ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E-~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~-----~~~~~~~h 286 (341)
++.+++++|+.|| ++|+|+||| +|.|| ++ ++|+.||+.||+|+. ... ..+..+.|
T Consensus 51 i~~~~~~vLl~~r-----~~g~w~~PGG~ve~gE~t~-----------~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~ 114 (212)
T 1u20_A 51 RVPIRRVLLMMMR-----FDGRLGFPGGFVDTRDISL-----------EEGLKRELEEELGPALATVEVTEDDYRSSQVR 114 (212)
T ss_dssp TEECCEEEEEEEE-----TTSCEECSEEEECTTTSCH-----------HHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEE
T ss_pred EEecCCEEEEEEe-----CCCeEECCCcccCCCCCCH-----------HHHHHHHHHHHHCCCccccceeeeeEEEeccc
Confidence 3456789999999 479999999 99999 98 999999999999998 433 25667777
Q ss_pred EeeceEEEEEEEEEEecc-ccc------------ccCCCCceeeeCCCCCCC--C---------CCHHHHHHHHHhhc
Q psy8564 287 KLTHLQFKIVPCHIFLKK-CFL------------KENKNNFIWYPIKKIKNS--P---------IPAPVRKILFQIIQ 340 (341)
Q Consensus 287 ~~~h~~~~l~~~~~~~~~-~~~------------~~~~~~~~W~~~~el~~~--~---------~~~a~~~il~~l~~ 340 (341)
.|+ .++.+++|.|...+ .+. ..+..++.|++++++.+. . +..+...++++|.+
T Consensus 115 ~~~-~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~~~~~p~f~~~~~i~~a~~~l~~~l~~ 191 (212)
T 1u20_A 115 EHP-QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGLPAFLCNNFIGNSKSQLLYALRS 191 (212)
T ss_dssp CTT-SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTSSTBHHHHTTSCBCTTHHHHHHHHHHH
T ss_pred cCC-CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhhhhcCCchhhhhhhhHHHHHHHHHHHHh
Confidence 777 67788999998643 110 011124799999999764 1 23566667666643
No 75
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.25 E-value=3.1e-12 Score=105.39 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=68.1
Q ss_pred eEEEEEEEeC-CEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEE
Q psy8564 211 SIIMFIVIDD-DYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISH 286 (341)
Q Consensus 211 ~~~~~ii~~~-g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h 286 (341)
.++++|+..+ |+|||.||.. .|+|+||| +|.||++ .+|+.||+.||+|++ .....+..+..
T Consensus 6 ~~~~~i~~~~~~~vLl~~r~~----~g~w~~PgG~ve~gEs~-----------~~aa~RE~~EEtGl~~~~~~~~~~~~~ 70 (146)
T 2jvb_A 6 VRGAAIFNENLSKILLVQGTE----SDSWSFPRGKISKDEND-----------IDCCIREVKEEIGFDLTDYIDDNQFIE 70 (146)
T ss_dssp CEEEEEBCTTSSEEEEECCSS----SSCCBCCEECCCSSSCH-----------HHHHHHHHHHHTSCCCSSSSCSSCEEE
T ss_pred EEEEEEEeCCCCEEEEEEEcC----CCcEECCcccCCCCCCH-----------HHHHHHHHHHHHCCCchHhcccccccc
Confidence 3444555554 8999999864 48999999 9999988 999999999999998 54333333322
Q ss_pred -EeeceEEEEEEEEEEecc-----cc-cccCCCCceeeeCCCCCCCCCCHH
Q psy8564 287 -KLTHLQFKIVPCHIFLKK-----CF-LKENKNNFIWYPIKKIKNSPIPAP 330 (341)
Q Consensus 287 -~~~h~~~~l~~~~~~~~~-----~~-~~~~~~~~~W~~~~el~~~~~~~a 330 (341)
.+++.+ .++|.+.... .+ ...+..++.|++++++.++..+..
T Consensus 71 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 119 (146)
T 2jvb_A 71 RNIQGKN--YKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSN 119 (146)
T ss_dssp EEETTEE--EEEEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCSS
T ss_pred cccCCce--EEEEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhcccc
Confidence 223323 3344443211 11 133447899999999988655543
No 76
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.25 E-value=1.6e-12 Score=114.21 Aligned_cols=102 Identities=10% Similarity=0.117 Sum_probs=73.2
Q ss_pred EEEEE-EEeCCEEEEEEeCCCCcccccccccc--cc-cccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEE
Q psy8564 212 IIMFI-VIDDDYVLFQKRSNKGIWGGLLSFPE--WI-LKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISH 286 (341)
Q Consensus 212 ~~~~i-i~~~g~vLl~kR~~~g~~~GlWEFPg--vE-~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h 286 (341)
+++++ +.++|+|||.+|...+..+|+|+||| +| .||++ .+|+.||+.||+|++ .....++.+ |
T Consensus 45 av~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~-----------~~aa~REl~EEtGl~~~~~~~l~~~-~ 112 (207)
T 1mk1_A 45 AVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPP-----------HLTAARELREEVGLQASTWQVLVDL-D 112 (207)
T ss_dssp EEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCH-----------HHHHHHHHHHHHCEEEEEEEEEEEE-C
T ss_pred EEEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCH-----------HHHHHHHHHHHHCCcccccEEEEEE-E
Confidence 34344 44679999999877777899999999 99 99988 999999999999998 655555544 5
Q ss_pred EeeceEE-EEEEEEEEecc-c-----ccccCCCCceeeeCCCCCCC
Q psy8564 287 KLTHLQF-KIVPCHIFLKK-C-----FLKENKNNFIWYPIKKIKNS 325 (341)
Q Consensus 287 ~~~h~~~-~l~~~~~~~~~-~-----~~~~~~~~~~W~~~~el~~~ 325 (341)
.+++... .+++|.+...+ . ....+..++.|++++++.++
T Consensus 113 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~ 158 (207)
T 1mk1_A 113 TAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARR 158 (207)
T ss_dssp SCTTTBCCCEEEEEEEEEEECCC----------CEEEEEHHHHHHH
T ss_pred cCCCccccEEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHH
Confidence 5555543 57788877533 1 11233468999999998764
No 77
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=99.17 E-value=4.6e-11 Score=107.03 Aligned_cols=124 Identities=10% Similarity=0.099 Sum_probs=81.4
Q ss_pred EEEEEeCCEEEEEEeCCCC-cccccccccc---cccccchhhhccchhhhhHHHHHHHHHHhcCCc-cc-----ccccCc
Q psy8564 214 MFIVIDDDYVLFQKRSNKG-IWGGLLSFPE---WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KN-----YLILPI 283 (341)
Q Consensus 214 ~~ii~~~g~vLl~kR~~~g-~~~GlWEFPg---vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~-----~~~~~~ 283 (341)
++|++.+|++||+||+..+ .++|+|+||+ ++.||+. ..+++..++.+|+.||+.||+|+. .. ...++.
T Consensus 64 v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E--~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~l~~ 141 (235)
T 2dho_A 64 VFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAE--LEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTR 141 (235)
T ss_dssp EEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHH--HCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEEEEE
T ss_pred EEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcc--cccccchhHHHHHHHHHHHHHCCCccccChhhcEEEEE
Confidence 3444557999999997654 6899999993 8888321 000011112789999999999998 42 345666
Q ss_pred EEEEeec-----eEEEEEEEEEEeccc--ccccCCCCceeeeCCCCCCC---------CCCHHHHHHHHHhh
Q psy8564 284 ISHKLTH-----LQFKIVPCHIFLKKC--FLKENKNNFIWYPIKKIKNS---------PIPAPVRKILFQII 339 (341)
Q Consensus 284 ~~h~~~h-----~~~~l~~~~~~~~~~--~~~~~~~~~~W~~~~el~~~---------~~~~a~~~il~~l~ 339 (341)
+.|.++. .+-.+++|.+..... +...+..+++|++++++.++ .|.+..+.+++.+.
T Consensus 142 ~~y~~~~~~~~~~~e~~~vf~~~~~~~~~~~~~Ev~~~~wv~~~el~~~l~~~~~~~~~ftp~~~~i~~~~L 213 (235)
T 2dho_A 142 IHYKAQSDGIWGEHEIDYILLVRMNVTLNPDPNEIKSYCYVSKEELKELLKKAASGEIKITPWFKIIAATFL 213 (235)
T ss_dssp EEEEEECSSSBEEEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHHHHHHHHTTSSCBCHHHHHHHHHTH
T ss_pred EEEeccCCCccceeEEEEEEEEEECCCCcCChHHEEEEEEEcHHHHHHHHhhccCCCcEECHhHHHHHHHHH
Confidence 6665542 122356777775432 22233367899999999653 78898888887653
No 78
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.16 E-value=2.2e-11 Score=106.17 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=66.6
Q ss_pred EEEEEEEe-CCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccC-cEEE
Q psy8564 212 IIMFIVID-DDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILP-IISH 286 (341)
Q Consensus 212 ~~~~ii~~-~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~-~~~h 286 (341)
++++|+.. +++|||.||.. .++|.|+||| +|.||++ .+|+.||+.||+|+. .....++ ...|
T Consensus 29 v~~~v~~~~~~~vLL~~r~~--~~~g~w~lPGG~ve~gEs~-----------~~aA~REl~EEtGl~~~~~~l~~~~~~~ 95 (199)
T 3h95_A 29 VAGAVFDESTRKILVVQDRN--KLKNMWKFPGGLSEPEEDI-----------GDTAVREVFEETGIKSEFRSVLSIRQQH 95 (199)
T ss_dssp EEEEEEETTTTEEEEEEESS--SSTTSBBCCEEECCTTCCH-----------HHHHHHHHHHHHCCCEEEEEEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEEEcC--CCCCCEECCccccCCCCCH-----------HHHHHHHHHHHhCCccccceEEEEEeee
Confidence 33444443 48999999965 3589999999 9999988 999999999999998 5443333 1123
Q ss_pred EeeceE-EEEEEEEEEecc---c--ccccCCCCceeeeCCCCCCCCCCHH
Q psy8564 287 KLTHLQ-FKIVPCHIFLKK---C--FLKENKNNFIWYPIKKIKNSPIPAP 330 (341)
Q Consensus 287 ~~~h~~-~~l~~~~~~~~~---~--~~~~~~~~~~W~~~~el~~~~~~~a 330 (341)
.++... ....+|.+.+.. . ....+..++.|++++++.++....+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 145 (199)
T 3h95_A 96 TNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENTTP 145 (199)
T ss_dssp ---------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCSSBCH
T ss_pred cCCCCceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhhhcCh
Confidence 344322 222334444332 1 1122336789999999987655433
No 79
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.15 E-value=3.3e-11 Score=114.77 Aligned_cols=104 Identities=11% Similarity=0.017 Sum_probs=78.8
Q ss_pred CEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEeec-------
Q psy8564 221 DYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKLTH------- 290 (341)
Q Consensus 221 g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~~h------- 290 (341)
.+|||.+|+.. |.|+||| +|.||++ .+|+.||+.||+|++ .....+..+.|.|++
T Consensus 38 ~~vLLv~r~~~----g~W~lPgG~ve~gEs~-----------~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~ 102 (364)
T 3fjy_A 38 IEVCIVHRPKY----DDWSWPKGKLEQNETH-----------RHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRH 102 (364)
T ss_dssp EEEEEEEETTT----TEEECCEEECCTTCCH-----------HHHHHHHHHHHHSCCEEEEEEEEEEC------------
T ss_pred eEEEEEEcCCC----CCEECCcCCCCCCCCH-----------HHHHHHHHHHHhCCeeeeccccceEEEeccCCCccccc
Confidence 49999999653 8999999 9999998 999999999999999 776777777777663
Q ss_pred ------eEEEEEEEEEEecccc---------------cccCCCCceeeeCCCCCCCCCCHHHHHHHHHhh
Q psy8564 291 ------LQFKIVPCHIFLKKCF---------------LKENKNNFIWYPIKKIKNSPIPAPVRKILFQII 339 (341)
Q Consensus 291 ------~~~~l~~~~~~~~~~~---------------~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~ 339 (341)
....+++|.+...+.. ...+..+++|++++++.++...+.++.+++++.
T Consensus 103 ~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~r~il~~~~ 172 (364)
T 3fjy_A 103 SHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVFV 172 (364)
T ss_dssp ---------CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCHHHHHHHHHHH
T ss_pred ccccccCceEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcchhhHHHHHHHH
Confidence 2456778887764411 113447899999999999999999999988764
No 80
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.13 E-value=2.2e-10 Score=96.62 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=68.4
Q ss_pred eEEE-EEEEeCCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEE-
Q psy8564 211 SIIM-FIVIDDDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIIS- 285 (341)
Q Consensus 211 ~~~~-~ii~~~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~- 285 (341)
..++ +++..+|+|||.+|.. .|.|+||| +|.||++ .+|+.||+.||+|++ .....++.+.
T Consensus 9 ~~v~~~i~~~~~~vLl~~r~~----~~~w~~p~G~~e~gE~~-----------~~aa~RE~~EE~G~~~~~~~~~~~~~~ 73 (164)
T 2kdv_A 9 PNVGIVICNRQGQVMWARRFG----QHSWQFPQGGINPGESA-----------EQAMYRELFEEVGLSRKDVRILASTRN 73 (164)
T ss_dssp EEEEEEEECTTSEEEEEEETT----CCCEECCEEECCTTCCH-----------HHHHHHHHHHHHCCCGGGEEEEEECSS
T ss_pred cEEEEEEEccCCEEEEEEEcC----CCeEECCeeecCCCCCH-----------HHHHHHHHHHHHCCCccceEEEEEecc
Confidence 3444 4445679999999974 68999999 9999988 999999999999998 5555554432
Q ss_pred ---EEeec-----------eEEEEEEEEEEeccc---c-c----ccCCCCceeeeCCCCCC
Q psy8564 286 ---HKLTH-----------LQFKIVPCHIFLKKC---F-L----KENKNNFIWYPIKKIKN 324 (341)
Q Consensus 286 ---h~~~h-----------~~~~l~~~~~~~~~~---~-~----~~~~~~~~W~~~~el~~ 324 (341)
+.++. .....++|.+.+.+. . . ..+..+++|++++++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~ 134 (164)
T 2kdv_A 74 WLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVR 134 (164)
T ss_dssp CEEEECCTTTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGG
T ss_pred eeEEecCcceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhh
Confidence 33322 123467788876431 1 1 11235789999988754
No 81
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=99.11 E-value=1.8e-10 Score=105.26 Aligned_cols=105 Identities=10% Similarity=0.049 Sum_probs=67.5
Q ss_pred ceeEEEEEEEe--CCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCc
Q psy8564 209 NCSIIMFIVID--DDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPI 283 (341)
Q Consensus 209 ~~~~~~~ii~~--~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~ 283 (341)
...++++|+.+ +|+|||.||... +|.|+||| +|.||++ ++|+.||+.||+|++ .....+..
T Consensus 100 ~v~~v~avv~~~~~~~vLLv~r~~~---~g~W~lPgG~ve~gEs~-----------~eAA~REl~EEtGl~~~~l~~~~~ 165 (271)
T 2a6t_A 100 RIPVRGAIMLDMSMQQCVLVKGWKA---SSGWGFPKGKIDKDESD-----------VDCAIREVYEETGFDCSSRINPNE 165 (271)
T ss_dssp CCCEEEEEEBCSSSSEEEEEEESST---TCCCBCSEEECCTTCCH-----------HHHHHHHHHHHHCCCCTTTCCTTC
T ss_pred CCCeEEEEEEECCCCEEEEEEEeCC---CCeEECCcccCCCCcCH-----------HHHHHHHHHHHhCCCceeeeeeee
Confidence 33444445444 389999999653 58999999 9999998 999999999999998 54333332
Q ss_pred EE-EEeeceEEEEEEEEEEecc-----cc-cccCCCCceeeeCCCCCCCCCCH
Q psy8564 284 IS-HKLTHLQFKIVPCHIFLKK-----CF-LKENKNNFIWYPIKKIKNSPIPA 329 (341)
Q Consensus 284 ~~-h~~~h~~~~l~~~~~~~~~-----~~-~~~~~~~~~W~~~~el~~~~~~~ 329 (341)
.. ..+++. .+++|.+.... .+ ...+..+++|++++++.++....
T Consensus 166 ~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~ 216 (271)
T 2a6t_A 166 FIDMTIRGQ--NVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNK 216 (271)
T ss_dssp EEEEEETTE--EEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC---
T ss_pred eccCCcCCc--eEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHhcC
Confidence 11 123343 34666665322 11 12233678999999999875543
No 82
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=99.10 E-value=1.7e-10 Score=103.97 Aligned_cols=123 Identities=9% Similarity=0.115 Sum_probs=80.2
Q ss_pred EEEEEeCCEEEEEEeCCCC-cccccccccc---cccccchhhhccchhhhhHHHHHHHHHHhcCCc-cc-----ccccCc
Q psy8564 214 MFIVIDDDYVLFQKRSNKG-IWGGLLSFPE---WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KN-----YLILPI 283 (341)
Q Consensus 214 ~~ii~~~g~vLl~kR~~~g-~~~GlWEFPg---vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~-----~~~~~~ 283 (341)
++|++.+|++||+||+..+ .++|+|+||+ ++.|++. ..+++..++.+|++||+.||+|+. .. ...++.
T Consensus 75 v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E--~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~l~~ 152 (246)
T 2pny_A 75 VVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAE--LEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTI 152 (246)
T ss_dssp EEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHH--HCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEEEEE
T ss_pred EEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcc--cccccchhHHHHHHHHHHHHHCCCccccCccccEEEEE
Confidence 3444557999999997654 6899999994 8877210 000111112789999999999998 42 345666
Q ss_pred EEEEeec-----eEEEEEEEEEEeccc--ccccCCCCceeeeCCCCCCC---------CCCHHHHHHHHHh
Q psy8564 284 ISHKLTH-----LQFKIVPCHIFLKKC--FLKENKNNFIWYPIKKIKNS---------PIPAPVRKILFQI 338 (341)
Q Consensus 284 ~~h~~~h-----~~~~l~~~~~~~~~~--~~~~~~~~~~W~~~~el~~~---------~~~~a~~~il~~l 338 (341)
+.|.++. .+-.+++|.+..... +...+..+++|++++++.++ .|.+..+.+++.+
T Consensus 153 ~~y~~~~~~~~~~~e~~~vf~~~~~~~~~~~~~Ev~~~~wv~~eel~~~l~~~~~~~~~ftp~~~~i~~~~ 223 (246)
T 2pny_A 153 YHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELWELLEREARGEVKVTPWLRTIAERF 223 (246)
T ss_dssp EEEEEESSSSBEEEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHHHHHHHHHTSSCBCHHHHHHHHHT
T ss_pred EEEEecCCCceeeeEEEEEEEEEECCCCCCChHHeeEEEEEeHHHHHHHHHhccCCCceECHhHHHHHHHH
Confidence 6655532 122356777775432 22233367899999999653 7888888887765
No 83
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=99.10 E-value=6e-11 Score=103.12 Aligned_cols=89 Identities=9% Similarity=0.082 Sum_probs=64.4
Q ss_pred CCEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEeeceEEEEE
Q psy8564 220 DDYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKLTHLQFKIV 296 (341)
Q Consensus 220 ~g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~~h~~~~l~ 296 (341)
+|+|||.||... +|.|+||| +|.||++ ++|++||+.||+|++ .....++.+.+ ..+. ..++
T Consensus 53 ~~~vLLv~r~~~---~g~W~lPgG~ve~gEt~-----------~eaa~REl~EEtGl~~~~~~~l~~~~~-~~~~-~~~~ 116 (194)
T 2fvv_A 53 EEEVLLVSSSRH---PDRWIVPGGGMEPEEEP-----------SVAAVREVCEEAGVKGTLGRLVGIFEN-QERK-HRTY 116 (194)
T ss_dssp CCEEEEEECSSC---TTSEECSEEECCTTCCH-----------HHHHHHHHHHHHCEEEEEEEEEEEEEE-TTTT-EEEE
T ss_pred CCEEEEEEEeCC---CCcEECCCCcCCCCcCH-----------HHHHHHHHHHHhCCccccceEEEEEEc-CCCc-eEEE
Confidence 589999999653 48999999 9999998 999999999999998 66566655543 2222 2456
Q ss_pred EEEEEeccc-----ccccCCCCceeeeCCCCCC
Q psy8564 297 PCHIFLKKC-----FLKENKNNFIWYPIKKIKN 324 (341)
Q Consensus 297 ~~~~~~~~~-----~~~~~~~~~~W~~~~el~~ 324 (341)
+|.+.+.+. ....++.+.+|++++++.+
T Consensus 117 ~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~ 149 (194)
T 2fvv_A 117 VYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIK 149 (194)
T ss_dssp EEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHH
T ss_pred EEEEEEccccCCCCCcccccceEEEEEHHHHHH
Confidence 676664321 1111236899999999865
No 84
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=99.05 E-value=7.8e-11 Score=102.06 Aligned_cols=101 Identities=10% Similarity=-0.036 Sum_probs=69.4
Q ss_pred EEEEEEEe--CCEEEEEEeCCCCc------ccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccc
Q psy8564 212 IIMFIVID--DDYVLFQKRSNKGI------WGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLI 280 (341)
Q Consensus 212 ~~~~ii~~--~g~vLl~kR~~~g~------~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~ 280 (341)
.+++++.+ +|++||.++...+. .+|.|+||| +| ||++ .+|+.||+.||+|++ .....
T Consensus 47 av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~-----------~~aa~REl~EEtG~~~~~~~~ 114 (191)
T 3o6z_A 47 GATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEP-----------EVCIRKEAIEETGYEVGEVRK 114 (191)
T ss_dssp EEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCH-----------HHHHHHHHHHHC-CCCSCEEE
T ss_pred EEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCH-----------HHHHHHHHHHHhCCccCcEEE
Confidence 34444433 58999987654322 678999999 99 9998 999999999999998 65666
Q ss_pred cCcEEEEeeceEEEEEEEEEEecc-------cccccCCCCceeeeCCCCCC
Q psy8564 281 LPIISHKLTHLQFKIVPCHIFLKK-------CFLKENKNNFIWYPIKKIKN 324 (341)
Q Consensus 281 ~~~~~h~~~h~~~~l~~~~~~~~~-------~~~~~~~~~~~W~~~~el~~ 324 (341)
++.+.+..++....+++|.+.... .....+..+..|++++++.+
T Consensus 115 l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 165 (191)
T 3o6z_A 115 LFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQALE 165 (191)
T ss_dssp EEEEESCTTTBCCEEEEEEEECCTTCC--------CCSSEEEEEEHHHHHH
T ss_pred EEEEEeCCCccCcEEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHHH
Confidence 665544433445567888888542 11133446789999988754
No 85
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=99.01 E-value=2.1e-10 Score=100.85 Aligned_cols=102 Identities=9% Similarity=-0.028 Sum_probs=66.6
Q ss_pred EEEEEEEe--CCEEEEEEeCCCCcc-----cccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-cccccc
Q psy8564 212 IIMFIVID--DDYVLFQKRSNKGIW-----GGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLIL 281 (341)
Q Consensus 212 ~~~~ii~~--~g~vLl~kR~~~g~~-----~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~ 281 (341)
++++++.+ +|+|||.++...+.. +++||||| +|.||++ ++|+.||+.||+|+. .....+
T Consensus 59 av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~-----------~~aA~REl~EEtGl~~~~~~~l 127 (209)
T 1g0s_A 59 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESV-----------EDVARREAIEEAGLIVKRTKPV 127 (209)
T ss_dssp EEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCH-----------HHHHHHHHHHHHCCCCCCEEEE
T ss_pred EEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCH-----------HHHHHHHHHHHcCcccCcEEEe
Confidence 44444443 689998553222332 68999999 9999998 999999999999998 655566
Q ss_pred CcEEEEeeceEEEEEEEEEEecc----c----ccccCCCCceeeeCCCCCC
Q psy8564 282 PIISHKLTHLQFKIVPCHIFLKK----C----FLKENKNNFIWYPIKKIKN 324 (341)
Q Consensus 282 ~~~~h~~~h~~~~l~~~~~~~~~----~----~~~~~~~~~~W~~~~el~~ 324 (341)
+.+.+.-......+++|.+.... . ..+.+..+..|++++++.+
T Consensus 128 ~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~ 178 (209)
T 1g0s_A 128 LSFLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQ 178 (209)
T ss_dssp EEEESCTTTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHH
T ss_pred EEEecCCCccCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHH
Confidence 55422212223457788887521 1 1122234689999998764
No 86
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=98.95 E-value=2.8e-09 Score=97.51 Aligned_cols=105 Identities=10% Similarity=0.134 Sum_probs=70.0
Q ss_pred CEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-cc--ccccCcEEEEeec--eEE
Q psy8564 221 DYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KN--YLILPIISHKLTH--LQF 293 (341)
Q Consensus 221 g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~--~~~~~~~~h~~~h--~~~ 293 (341)
++|||.+|... .++|.|+||| +|.||++ .+|+.||+.||+|++ .. ...+..+.+...+ .++
T Consensus 56 ~~VLLv~R~~~-p~~g~W~lPGG~ve~gEs~-----------~~AA~REl~EEtGl~v~~~~l~~l~~~~~~~r~~~~~~ 123 (273)
T 2fml_A 56 LKVLLIQRKGH-PFRNSWALPGGFVNRNEST-----------EDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWV 123 (273)
T ss_dssp EEEEEEEECSS-SSTTCEECCEEECCTTSCH-----------HHHHHHHHHHHHCCCCCGGGEEEEEEECCTTSSTTSSE
T ss_pred cEEEEEEccCC-CCCCcEECCccCCCCCcCH-----------HHHHHHHHHHHHCCCCCcCcEEEEEEEcCCCCCCCceE
Confidence 39999999754 6789999999 9999988 999999999999976 32 2222222111111 234
Q ss_pred EEEEEEEEecccc--cccCCCCceeeeCCCC-----------------------CCCCCCHHHHHHHHH
Q psy8564 294 KIVPCHIFLKKCF--LKENKNNFIWYPIKKI-----------------------KNSPIPAPVRKILFQ 337 (341)
Q Consensus 294 ~l~~~~~~~~~~~--~~~~~~~~~W~~~~el-----------------------~~~~~~~a~~~il~~ 337 (341)
..++|.+.+.+.. ...+..+..|++++++ ...+++-.+..|+..
T Consensus 124 ~~~~y~a~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~LafdH~~Il~~ 192 (273)
T 2fml_A 124 VTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFDHSEIIIK 192 (273)
T ss_dssp EEEEEEEECCCCCCCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTTHHHHHHH
T ss_pred EEEEEEEEeCCCCCCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCcccccHHHHHHH
Confidence 5567777765421 1122356899999863 344677777777654
No 87
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=98.90 E-value=1.6e-09 Score=95.19 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=60.2
Q ss_pred CEEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEE--EeeceEEEE
Q psy8564 221 DYVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISH--KLTHLQFKI 295 (341)
Q Consensus 221 g~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h--~~~h~~~~l 295 (341)
+++||.++-..+.-+++|+||| +|.||++ ++|+.||+.||+|+. .....+..+.. .+++..+++
T Consensus 77 ~~vlLv~q~R~~~~~~~welPgG~ve~gEs~-----------~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 145 (212)
T 2dsc_A 77 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETP-----------EAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHI 145 (212)
T ss_dssp CEEEEEEEEEGGGTEEEEECCEEECCTTCCH-----------HHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCEEEE
T ss_pred cEEEEEEeecCCCCCcEEECCccccCCCCCH-----------HHHHHHHHHHHhCCCccceEEeccEEcCCCccCceEEE
Confidence 4888866322234478999999 9999988 999999999999998 55555544321 234444444
Q ss_pred EEEEEEecc--------cccccCCCCceeeeCCCCCC
Q psy8564 296 VPCHIFLKK--------CFLKENKNNFIWYPIKKIKN 324 (341)
Q Consensus 296 ~~~~~~~~~--------~~~~~~~~~~~W~~~~el~~ 324 (341)
.++.+.... .....+..++.|++++++.+
T Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 182 (212)
T 2dsc_A 146 VTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQ 182 (212)
T ss_dssp EEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHH
T ss_pred EEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHH
Confidence 333333221 11123346789999999865
No 88
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=98.89 E-value=6.2e-10 Score=94.75 Aligned_cols=66 Identities=18% Similarity=0.010 Sum_probs=50.7
Q ss_pred EEEEEEeCCCCcccccccccc--ccccc-chhhhccchhhhhHHHHHHHHHHhcCC-c-ccccccCcEEEEeeceEEEEE
Q psy8564 222 YVLFQKRSNKGIWGGLLSFPE--WILKD-KIINFVDNNLKNLIELEIKKFISSFGF-I-KNYLILPIISHKLTHLQFKIV 296 (341)
Q Consensus 222 ~vLl~kR~~~g~~~GlWEFPg--vE~~E-~~~~~~~~~~~~~~~a~~rE~~ee~g~-~-~~~~~~~~~~h~~~h~~~~l~ 296 (341)
.||++.|- +|+||||| ||.+| |+ ++++.||+.||+|+ . ....++..+.|.|+ .++.++
T Consensus 45 ~iLmQ~R~-----~G~weFPGGkVe~gE~t~-----------e~aL~REl~EElg~~~V~~~~y~~s~~~~yp-~~V~LH 107 (214)
T 3kvh_A 45 SVLMQMRF-----DGLLGFPGGFVDRRFWSL-----------EDGLNRVLGLGLGCLRLTEADYLSSHLTEGP-HRVVAH 107 (214)
T ss_dssp EEEEEEET-----TSCEECSEEEECTTTCCH-----------HHHHHHSCCSCC---CCCGGGEEEEEEC-----CEEEE
T ss_pred eEEEeeee-----CCEEeCCCccCCCCCCCH-----------HHHHHHHHHHhhCCeeeeeeeeEEEEeccCC-CEEEEE
Confidence 57888874 49999999 99999 88 99999999999997 4 55567777888887 688999
Q ss_pred EEEEEecc
Q psy8564 297 PCHIFLKK 304 (341)
Q Consensus 297 ~~~~~~~~ 304 (341)
+|.|++..
T Consensus 108 fY~crl~~ 115 (214)
T 3kvh_A 108 LYARQLTL 115 (214)
T ss_dssp EEEEECCH
T ss_pred EEEEEeeC
Confidence 99999754
No 89
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=98.88 E-value=1.6e-09 Score=95.73 Aligned_cols=79 Identities=6% Similarity=-0.037 Sum_probs=53.1
Q ss_pred cccccccc--ccc-ccchhhhccchhhhhHHHHHHHHHHhcCCc-c--cccccCcEEEEeeceEEEEEEEEEEecc----
Q psy8564 235 GGLLSFPE--WIL-KDKIINFVDNNLKNLIELEIKKFISSFGFI-K--NYLILPIISHKLTHLQFKIVPCHIFLKK---- 304 (341)
Q Consensus 235 ~GlWEFPg--vE~-~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~--~~~~~~~~~h~~~h~~~~l~~~~~~~~~---- 304 (341)
+++||||| +|. ||++ ++|+.||+.||+|+. . ....++.+.+........+++|.+...+
T Consensus 94 ~~~welPgG~ve~~gEs~-----------~eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~ 162 (218)
T 3q91_A 94 GVTVELCAGLVDQPGLSL-----------EEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRS 162 (218)
T ss_dssp CEEEECEEEECCSSSCCH-----------HHHHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBC
T ss_pred CeEEECCcceeCCCCCCH-----------HHHHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccc
Confidence 79999999 999 9998 999999999999997 2 2334444333222334456788887542
Q ss_pred -----cccccCCCCceeeeCCCCCC
Q psy8564 305 -----CFLKENKNNFIWYPIKKIKN 324 (341)
Q Consensus 305 -----~~~~~~~~~~~W~~~~el~~ 324 (341)
...+.+..+..|++++++.+
T Consensus 163 ~~~~~~~d~~E~~ev~wv~l~el~~ 187 (218)
T 3q91_A 163 GPGGGLVEEGELIEVVHLPLEGAQA 187 (218)
T ss_dssp C---------CCEEEEEEEGGGHHH
T ss_pred cCCCCCCCCCcEEEEEEEEHHHHHH
Confidence 11122346789999999854
No 90
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=98.87 E-value=9.8e-09 Score=91.48 Aligned_cols=119 Identities=16% Similarity=0.218 Sum_probs=80.0
Q ss_pred EEEEEEeCCC-Ccccccccccc--cccccchh-----hh----ccchhhhhHHHHHHHHHHhcCCc-cc-cc--------
Q psy8564 222 YVLFQKRSNK-GIWGGLLSFPE--WILKDKII-----NF----VDNNLKNLIELEIKKFISSFGFI-KN-YL-------- 279 (341)
Q Consensus 222 ~vLl~kR~~~-g~~~GlWEFPg--vE~~E~~~-----~~----~~~~~~~~~~a~~rE~~ee~g~~-~~-~~-------- 279 (341)
+|||.||..+ .+++|.|.||| +|.+|+.. .. .......+..|++||+.||+|+. .. ..
T Consensus 25 ~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~~~~~~~~~~~~~ 104 (232)
T 3qsj_A 25 EVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAVRDGEGTKMDTP 104 (232)
T ss_dssp EEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCSEECTTCCBCCSC
T ss_pred EEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceeccccccCcccChh
Confidence 8999999876 46899999999 89887520 00 00111224788999999999986 21 11
Q ss_pred ------------------------------ccCcEEEEee----ceEEEEEEEEEEecccc----cccCCCCceeeeCCC
Q psy8564 280 ------------------------------ILPIISHKLT----HLQFKIVPCHIFLKKCF----LKENKNNFIWYPIKK 321 (341)
Q Consensus 280 ------------------------------~~~~~~h~~~----h~~~~l~~~~~~~~~~~----~~~~~~~~~W~~~~e 321 (341)
.+..+.|-.| .+++..++|.+.+.... ...|..+..|++++|
T Consensus 105 ~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~lpq~~~v~~d~~E~~~~~W~~p~e 184 (232)
T 3qsj_A 105 LAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQHLGEPRLHGAELDAALWTPARD 184 (232)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEECSSCCCCCCCSSSEEEEEEEEHHH
T ss_pred hHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEECCCCCCCCCCCCceEEEEEEcHHH
Confidence 1112222111 24677888887765421 123346789999999
Q ss_pred C------CCCCCCHHHHHHHHHhhc
Q psy8564 322 I------KNSPIPAPVRKILFQIIQ 340 (341)
Q Consensus 322 l------~~~~~~~a~~~il~~l~~ 340 (341)
+ ..+.++++...+|..|.+
T Consensus 185 al~~~~~G~i~L~pPT~~~L~~L~~ 209 (232)
T 3qsj_A 185 MLTRIQSGELPAVRPTIAVLKALVA 209 (232)
T ss_dssp HHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCceechhHHHHHHHHHc
Confidence 9 689999999999998865
No 91
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=98.77 E-value=7.6e-08 Score=88.74 Aligned_cols=101 Identities=11% Similarity=0.015 Sum_probs=67.9
Q ss_pred EEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-c-----------cccccCc--EE
Q psy8564 222 YVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-K-----------NYLILPI--IS 285 (341)
Q Consensus 222 ~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~-----------~~~~~~~--~~ 285 (341)
+|||.||... |.|+||| +|.||++ .+|++||+.||+|+. . ....+.. -.
T Consensus 140 ~vLl~~r~~~----g~W~lPGG~Ve~GEs~-----------~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~ 204 (292)
T 1q33_A 140 QFVAIKRKDC----GEWAIPGGMVDPGEKI-----------SATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHL 204 (292)
T ss_dssp EEEEEECTTT----CSEECCCEECCTTCCH-----------HHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEE
T ss_pred EEEEEEecCC----CcEeCCCcccCCCCCH-----------HHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccc
Confidence 7999999753 7999999 9999988 999999999999986 2 1222332 12
Q ss_pred EEeec----------eEEEEEEEEEEecc-------cc-cccCCCCceeeeCCCCCCCCCCHHHHHHHHHhh
Q psy8564 286 HKLTH----------LQFKIVPCHIFLKK-------CF-LKENKNNFIWYPIKKIKNSPIPAPVRKILFQII 339 (341)
Q Consensus 286 h~~~h----------~~~~l~~~~~~~~~-------~~-~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~ 339 (341)
++|+. ..+...+|.+...+ .. ...+..+++|++++++.+ +...++.||+.+.
T Consensus 205 ~vy~~~~~dpr~~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~--L~~~h~~il~~~~ 274 (292)
T 1q33_A 205 VIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLK--LYASHSQFIKLVA 274 (292)
T ss_dssp EEEEEECCCTTCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCC--CSTTHHHHHHHHH
T ss_pred eeecccccCCCCCcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCcc--cCHhHHHHHHHHH
Confidence 22221 13344555554321 11 122346789999999985 6778888887764
No 92
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=98.69 E-value=1.6e-08 Score=89.25 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=57.5
Q ss_pred CEEEEEEeCCCCcccccccccc--ccccc-chhhhccchhhhhHHHHHHHHHHhcCCc-ccccccCcEEEEee----ceE
Q psy8564 221 DYVLFQKRSNKGIWGGLLSFPE--WILKD-KIINFVDNNLKNLIELEIKKFISSFGFI-KNYLILPIISHKLT----HLQ 292 (341)
Q Consensus 221 g~vLl~kR~~~g~~~GlWEFPg--vE~~E-~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~~~~~~~~h~~~----h~~ 292 (341)
+++|+.+|. +|.|+||| +|.|| ++ ++|+.||+.||+|++ ... .+..+.+.++ ..+
T Consensus 65 ~~~ll~~r~-----~g~w~lPGG~ve~gE~t~-----------~eaa~REl~EEtGl~~~~~-~l~~l~~~~~~~~~~~~ 127 (217)
T 2xsq_A 65 YAILMQMRF-----DGRLGFPGGFVDTQDRSL-----------EDGLNRELREELGEAAAAF-RVERTDYRSSHVGSGPR 127 (217)
T ss_dssp EEEEEEEET-----TSCEECSEEECCTTCSSH-----------HHHHHHHHHHHHCGGGGGC-CCCGGGEEEEEECSSSS
T ss_pred CcEEEEEcc-----CCeEECCceecCCCCCCH-----------HHHHHHHHHHHHCCCCccc-eeEEEEEEeecCCCCCe
Confidence 367777774 68999999 99999 98 999999999999998 431 2222222222 134
Q ss_pred EEEEEEEEEecc-cc----------cc--cCCCCceeeeCCCCC
Q psy8564 293 FKIVPCHIFLKK-CF----------LK--ENKNNFIWYPIKKIK 323 (341)
Q Consensus 293 ~~l~~~~~~~~~-~~----------~~--~~~~~~~W~~~~el~ 323 (341)
...++|.+.+.. .. .. .+..+..|++.+++.
T Consensus 128 ~~~~~f~~~l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~ 171 (217)
T 2xsq_A 128 VVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLR 171 (217)
T ss_dssp EEEEEEEEECCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred EEEEEEEEEeccccceecccccccccccCCceeeEEEEEHHHhh
Confidence 556778787643 11 11 111246799999997
No 93
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=98.60 E-value=5.7e-08 Score=90.59 Aligned_cols=107 Identities=8% Similarity=0.125 Sum_probs=77.0
Q ss_pred eeEEEEEEEeCCEEEEEEeCCCCcccccccccccccccchhhhccchhhhhHHHHHHHHHHhc-CCc-ccccccCcEEEE
Q psy8564 210 CSIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPEWILKDKIINFVDNNLKNLIELEIKKFISSF-GFI-KNYLILPIISHK 287 (341)
Q Consensus 210 ~~~~~~ii~~~g~vLl~kR~~~g~~~GlWEFPgvE~~E~~~~~~~~~~~~~~~a~~rE~~ee~-g~~-~~~~~~~~~~h~ 287 (341)
+.++.+|+.++|+|||. +. .| |.+||.+.+++. .+++.||.+||. |++ .....+..+.+.
T Consensus 183 ~~~vgaii~~~g~vLL~--~~----~G-W~LPG~~~~~~~-----------~~~a~RE~~EEttGl~v~~~~L~~v~~~~ 244 (321)
T 3rh7_A 183 EIRLGAVLEQQGAVFLA--GN----ET-LSLPNCTVEGGD-----------PARTLAAYLEQLTGLNVTIGFLYSVYEDK 244 (321)
T ss_dssp CEEEEEEEESSSCEEEB--CS----SE-EBCCEEEESSSC-----------HHHHHHHHHHHHHSSCEEEEEEEEEEECT
T ss_pred cceEEEEEEECCEEEEe--eC----CC-ccCCcccCCCCh-----------hHHHHHHHHHHhcCCEEeeceEEEEEEcC
Confidence 34667788889999999 32 47 999996666655 668899999998 998 654443332221
Q ss_pred eeceEEEEEEEEEEecccccccCCCCceeeeCCCCCCCCCC-HHHHHHHHHhhc
Q psy8564 288 LTHLQFKIVPCHIFLKKCFLKENKNNFIWYPIKKIKNSPIP-APVRKILFQIIQ 340 (341)
Q Consensus 288 ~~h~~~~l~~~~~~~~~~~~~~~~~~~~W~~~~el~~~~~~-~a~~~il~~l~~ 340 (341)
.+...+ .+|+|++.+.. . .+++|++++||....+. ++.+.+|+.+.+
T Consensus 245 -~~~~~~-i~f~~~~~~g~--~--~e~~~f~~~elp~~~~~~~~~~~~L~~y~~ 292 (321)
T 3rh7_A 245 -SDGRQN-IVYHALASDGA--P--RQGRFLRPAELAAAKFSSSATADIINRFVL 292 (321)
T ss_dssp -TTCCEE-EEEEEEECSSC--C--SSSEEECHHHHTTCEESSHHHHHHHHHHHH
T ss_pred -CCceEE-EEEEEEeCCCC--e--eeeEEECHHHCCCcccCCHHHHHHHHHHHH
Confidence 122333 48899876532 2 68999999999998876 888889888754
No 94
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=98.54 E-value=1.9e-07 Score=86.15 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=68.3
Q ss_pred EEEEeCC---EEEEEEeCCC-Ccccccc-cccc--cccccchhhhccchhhhhHHHHHHHHHHhcCCc-ccc---cccCc
Q psy8564 215 FIVIDDD---YVLFQKRSNK-GIWGGLL-SFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGFI-KNY---LILPI 283 (341)
Q Consensus 215 ~ii~~~g---~vLl~kR~~~-g~~~GlW-EFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~~-~~~---~~~~~ 283 (341)
.+...++ ++||+||+.. ..+.|+| .+|+ +++||++ .+|+.||+.||+|++ ... ...+.
T Consensus 124 ~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~-----------~eaA~REl~EElGI~~~~~~~l~~~g~ 192 (300)
T 3dup_A 124 NGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSL-----------RQNLIKECAEEADLPEALARQAIPVGA 192 (300)
T ss_dssp EEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCH-----------HHHHHHHHHHHHCCCHHHHTTCEEEEE
T ss_pred EEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCH-----------HHHHHHHHHHHhCCChhhhhhccccce
Confidence 3344555 9999999775 5799999 6988 9999998 999999999999998 332 23445
Q ss_pred EEEEee--c--eEEEEEEEEEEeccc----ccccCCCCceeeeCCCCCC
Q psy8564 284 ISHKLT--H--LQFKIVPCHIFLKKC----FLKENKNNFIWYPIKKIKN 324 (341)
Q Consensus 284 ~~h~~~--h--~~~~l~~~~~~~~~~----~~~~~~~~~~W~~~~el~~ 324 (341)
+++.+. . ..-.+++|.+.+... +...|..+++|++++|+.+
T Consensus 193 i~y~~~~~~G~~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~v~~~El~~ 241 (300)
T 3dup_A 193 ITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVE 241 (300)
T ss_dssp EEEEEEETTEEEEEEEEEEEEECCTTCCCCCTTSSEEEEEEEEHHHHHH
T ss_pred EEEEEecCCCeEEEEEEEEEEEecCCCcCCCCchHhheEEEECHHHHHH
Confidence 555442 1 122356777665431 2223346789999888743
No 95
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=98.15 E-value=8.6e-07 Score=76.35 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=38.1
Q ss_pred EEEEEEE-eCC--EEEEEEeCCCCcccccccccc--cccccchhhhccchhhhhHHHHHHHHHHhcCC
Q psy8564 212 IIMFIVI-DDD--YVLFQKRSNKGIWGGLLSFPE--WILKDKIINFVDNNLKNLIELEIKKFISSFGF 274 (341)
Q Consensus 212 ~~~~ii~-~~g--~vLl~kR~~~g~~~GlWEFPg--vE~~E~~~~~~~~~~~~~~~a~~rE~~ee~g~ 274 (341)
++++|+. +++ +||+.|++. +.|+||| +|+||++ ++++.||+.||+|+
T Consensus 61 V~avil~~~~~~phVLLlq~~~-----~~f~LPGGkle~gE~~-----------~eaL~REL~EELg~ 112 (208)
T 3bho_A 61 VEGVLIVHEHRLPHVLLLQLGT-----TFFKLPGGELNPGEDE-----------VEGLKRLMTEILGR 112 (208)
T ss_dssp EEEEEEEEETTEEEEEEEEEET-----TEEECSEEECCTTCCH-----------HHHHHHHHHHHHCC
T ss_pred EEEEEEEcCCCCcEEEEEEcCC-----CcEECCCcccCCCCCH-----------HHHHHHHHHHHhCC
Confidence 4444443 444 799999854 3999999 9999998 99999999999995
No 96
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=95.41 E-value=0.11 Score=43.77 Aligned_cols=71 Identities=11% Similarity=0.009 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHhhhcChhhHHHHHHHHHHhC--CCHHHHHhCCHHHHHHHHhhcCcH---HHHHHHHHHHHHhHH
Q psy8564 8 KNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKF--PNIMSLAQAKLENVMELWSGLGYY---SRARNLHICAKLVFF 78 (341)
Q Consensus 8 ~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~--pt~~~la~~~~~~l~~~l~~~G~~---~rA~~i~~~a~~i~~ 78 (341)
+--||.|+-+.+-.-.++.++..-.+.|.+.| .+|+.+|..+++++++++..-|.- .|.+.++.-|+.+.+
T Consensus 29 ~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~Ll~d~gIIRnr~KI~A~i~NA~~~l~ 104 (186)
T 2jg6_A 29 KALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLK 104 (186)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHH
Confidence 34588888888888889999999999999998 599999999999999999988863 267777777776654
No 97
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=94.68 E-value=0.23 Score=41.75 Aligned_cols=71 Identities=14% Similarity=0.103 Sum_probs=60.6
Q ss_pred CChHHHHHHHHHhhhcChhhHHHHHHHHHHhC--CCHHHHHhCCHHHHHHHHhhcCcH---HHHHHHHHHHHHhHH
Q psy8564 8 KNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKF--PNIMSLAQAKLENVMELWSGLGYY---SRARNLHICAKLVFF 78 (341)
Q Consensus 8 ~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~--pt~~~la~~~~~~l~~~l~~~G~~---~rA~~i~~~a~~i~~ 78 (341)
+--||.|+-+++-.-.++.++..-.+.|.+.| .+|+.+|..+++++++++..-|.- .|.+.++.-|+.+.+
T Consensus 29 ~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~Ll~d~~IIRnr~KI~A~i~NA~~~l~ 104 (183)
T 2ofk_A 29 RKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLA 104 (183)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHH
Confidence 34588889898888889999999999999998 599999999999999999888863 277778887777764
No 98
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=93.59 E-value=0.17 Score=38.07 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=38.9
Q ss_pred HHHHHhCCHHHHHHHHhhcCcHHHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHHHH
Q psy8564 42 IMSLAQAKLENVMELWSGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 42 ~~~la~~~~~~l~~~l~~~G~~~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~ 109 (341)
+-+|..++.++|.. +.++|- ..|+.|.+.-+. .|.+ .+.++|.++||||+++++.+...+
T Consensus 31 ~i~iN~a~~~~L~~-ipGIG~-~~A~~Il~~r~~-----~g~f-~s~edL~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 31 LDLLNEGSARDLRS-LQRIGP-KKAQLIVGWREL-----HGPF-SQVEDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp HHHHHHSCHHHHHH-STTCCH-HHHHHHHHHHHH-----HCCC-SSGGGGGGSTTCCHHHHHHHHHHH
T ss_pred CeehhhCCHHHHHH-CCCCCH-HHHHHHHHHHHh-----cCCc-CCHHHHHhCCCCCHHHHHHHHHCc
Confidence 45577777777743 566763 345555544221 1444 567788999999999998887654
No 99
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=91.28 E-value=0.18 Score=35.56 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=19.9
Q ss_pred cchHHHhcCCCCCHHHHHHHHHHH
Q psy8564 86 KNFISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 86 ~~~~~L~~l~GIG~~tA~~il~~~ 109 (341)
.+.++|.++||||+++|..+..+.
T Consensus 43 a~~~~L~~i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 43 ASVAELMKVEGIGEKIAKEIRRVI 66 (75)
T ss_dssp CCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHhcCCCCCHHHHHHHHHHH
Confidence 357889999999999999887654
No 100
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=90.99 E-value=0.12 Score=36.86 Aligned_cols=52 Identities=31% Similarity=0.409 Sum_probs=30.6
Q ss_pred HHHHhCCHHHHHHHHhhcCcHHHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHH
Q psy8564 43 MSLAQAKLENVMELWSGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIR 106 (341)
Q Consensus 43 ~~la~~~~~~l~~~l~~~G~~~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il 106 (341)
-++..++.++|.. +.|+|- .+|+.|.+. + --.+.++|.+++|||+++++.+.
T Consensus 19 idiN~a~~~~L~~-ipGIG~-~~A~~Il~~-------r---~~~s~~eL~~v~Gig~k~~~~i~ 70 (75)
T 2duy_A 19 VSLNEASLEELMA-LPGIGP-VLARRIVEG-------R---PYARVEDLLKVKGIGPATLERLR 70 (75)
T ss_dssp EETTTCCHHHHTT-STTCCH-HHHHHHHHT-------C---CCSSGGGGGGSTTCCHHHHHHHG
T ss_pred cChhhCCHHHHHh-CCCCCH-HHHHHHHHH-------c---ccCCHHHHHhCCCCCHHHHHHHH
Confidence 3455666666644 355552 234444432 1 12467788888888888887764
No 101
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=90.14 E-value=0.2 Score=35.92 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=16.4
Q ss_pred chHHHhcCCCCCHHHHHHHHHH
Q psy8564 87 NFISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 87 ~~~~L~~l~GIG~~tA~~il~~ 108 (341)
+.++|.++||||+++|..|..+
T Consensus 54 ~~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 54 SVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp CHHHHTTSSSTTSHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHH
Confidence 5677888888888888777654
No 102
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=90.12 E-value=0.23 Score=36.55 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=19.5
Q ss_pred cchHHHhcCCCCCHHHHHHHHHHH
Q psy8564 86 KNFISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 86 ~~~~~L~~l~GIG~~tA~~il~~~ 109 (341)
.+.++|.++||||+++|..+..+.
T Consensus 48 a~~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 48 ASREDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHH
Confidence 357888899999999988887765
No 103
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=90.10 E-value=0.16 Score=43.90 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=22.5
Q ss_pred cchHHHhcCCCCCHHHHHHHHHHHhCC
Q psy8564 86 KNFISLINLPGIGQSTASAIRVFAYGK 112 (341)
Q Consensus 86 ~~~~~L~~l~GIG~~tA~~il~~~~~~ 112 (341)
.+.+.|.++||||+|||+-|..---++
T Consensus 120 ~d~~~L~~vpGIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 120 GNVAALTRVPGIGKRGAERMVLELRDK 146 (212)
T ss_dssp TCHHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999987655443
No 104
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=89.95 E-value=0.1 Score=44.87 Aligned_cols=28 Identities=36% Similarity=0.487 Sum_probs=22.7
Q ss_pred cchHHHhcCCCCCHHHHHHHHHHHhCCe
Q psy8564 86 KNFISLINLPGIGQSTASAIRVFAYGKR 113 (341)
Q Consensus 86 ~~~~~L~~l~GIG~~tA~~il~~~~~~~ 113 (341)
+..++|.+|||||+|||.-+..+-+.++
T Consensus 23 ~LI~~l~~LPGIG~KsA~RlA~hLL~~~ 50 (212)
T 3vdp_A 23 KLIEELSKLPGIGPKTAQRLAFFIINMP 50 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 4578899999999999988777766654
No 105
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=89.87 E-value=0.24 Score=36.63 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=19.5
Q ss_pred cchHHHhcCCCCCHHHHHHHHHHH
Q psy8564 86 KNFISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 86 ~~~~~L~~l~GIG~~tA~~il~~~ 109 (341)
.+.++|.+++|||+++|..+..+.
T Consensus 61 as~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 61 ASREDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp CCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHH
Confidence 457888999999999988887664
No 106
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=89.60 E-value=0.2 Score=42.58 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.3
Q ss_pred cchHHHhcCCCCCHHHHHHHHHHHhC
Q psy8564 86 KNFISLINLPGIGQSTASAIRVFAYG 111 (341)
Q Consensus 86 ~~~~~L~~l~GIG~~tA~~il~~~~~ 111 (341)
.+.++|.++||||+|||.-|...--+
T Consensus 104 ~d~~~L~~vpGIG~K~A~rI~~~lk~ 129 (191)
T 1ixr_A 104 GDARLLTSASGVGRRLAERIALELKG 129 (191)
T ss_dssp TCHHHHTTSTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 57889999999999999998765433
No 107
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=89.25 E-value=0.22 Score=35.35 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.8
Q ss_pred chHHHhcCCCCCHHHHHHHHHH
Q psy8564 87 NFISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 87 ~~~~L~~l~GIG~~tA~~il~~ 108 (341)
+.++|.++||||+++|..|+..
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~ 46 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEG 46 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHT
T ss_pred CHHHHHhCCCCCHHHHHHHHHH
Confidence 4788999999999999999985
No 108
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=88.67 E-value=0.26 Score=42.38 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.0
Q ss_pred cchHHHhcCCCCCHHHHHHHHHHH
Q psy8564 86 KNFISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 86 ~~~~~L~~l~GIG~~tA~~il~~~ 109 (341)
.+.++|.++||||+|||.-|...-
T Consensus 105 ~d~~~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 105 EEVGALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp TCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHH
Confidence 578999999999999999997644
No 109
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=88.11 E-value=1 Score=42.05 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=40.3
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHHHH
Q psy8564 51 ENVMELWSGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 51 ~~l~~~l~~~G~~~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~ 109 (341)
+++..++.-.|-.-|++.-.++|..|.. +...+ .+.++|.+|||||+++|+.|.-+.
T Consensus 25 ~~ia~~~e~~g~~~r~~AYr~Aa~~l~~-l~~~i-~~~~~l~~lpGIG~~~A~kI~E~l 81 (360)
T 2ihm_A 25 ETLAEAAGFEANEGRLLSFSRAASVLKS-LPCPV-ASLSQLHGLPYFGEHSTRVIQELL 81 (360)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-CSSCC-CSGGGGTTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHh-CCccc-CCHHHHhcCCCCCHHHHHHHHHHH
Confidence 3444555555622388888888988875 33333 345679999999999999998775
No 110
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=87.92 E-value=0.84 Score=45.47 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhC--CCHHHHHhCCHHHHHHHHhhcCcH-HHHHHHHHHH-------------------------HHhHHH
Q psy8564 28 VIPYYQRFLKKF--PNIMSLAQAKLENVMELWSGLGYY-SRARNLHICA-------------------------KLVFFK 79 (341)
Q Consensus 28 ~~~~~~~l~~~~--pt~~~la~~~~~~l~~~l~~~G~~-~rA~~i~~~a-------------------------~~i~~~ 79 (341)
....++.|++.- -++.+|..++.++|..+ -||. .+|.+|.+.- +.+.+.
T Consensus 455 G~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l---~g~geKsa~nL~~aIe~sk~~~l~r~l~aLGI~~vG~~~a~~La~~ 531 (586)
T 4glx_A 455 GDKIIDQLVEKEYVHTPADLFKLTAGKLTGL---ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAY 531 (586)
T ss_dssp CHHHHHHHHHTTCCSSGGGGGTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHhCCCHHHHhcc---cCccHHHHHHHHHHHHHHcCCCHHHHHHHcCCCchhHHHHHHHHHH
Confidence 355666777653 58888888888876432 2555 3566665542 333443
Q ss_pred hCCCC----ccchHHHhcCCCCCHHHHHHHHHHHhCCeeeccChhHHHHHHHHh
Q psy8564 80 YNGIF----PKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVL 129 (341)
Q Consensus 80 ~~g~~----p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~ 129 (341)
|+. + ..+.++|.+++|||+.+|..|..|- -|-+.+.++.+|.
T Consensus 532 f~s-l~~l~~a~~e~l~~i~giG~~~A~si~~ff-------~~~~n~~~i~~L~ 577 (586)
T 4glx_A 532 FGT-LEALEAASIEELQKVPDVGIVVASHVHNFF-------AEESNRNVISELL 577 (586)
T ss_dssp HCS-HHHHHHCCHHHHTTSTTCCHHHHHHHHHHH-------HSHHHHHHHHHHH
T ss_pred cCC-HHHHHccCHHHHhcCCCccHHHHHHHHHHH-------cCHHHHHHHHHHH
Confidence 432 2 2357889999999999999998874 2445666666663
No 111
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=87.90 E-value=0.34 Score=42.02 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=22.8
Q ss_pred cchHHHhcCCCCCHHHHHHHHHHHhCCe
Q psy8564 86 KNFISLINLPGIGQSTASAIRVFAYGKR 113 (341)
Q Consensus 86 ~~~~~L~~l~GIG~~tA~~il~~~~~~~ 113 (341)
+.++.|.+|||||+|||.-+..+-+.++
T Consensus 9 ~LI~~l~~LPGIG~KSA~RlA~hLL~~~ 36 (228)
T 1vdd_A 9 SLIRELSRLPGIGPKSAQRLAFHLFEQP 36 (228)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHSSSC
T ss_pred HHHHHHhHCCCCCHHHHHHHHHHHHcCC
Confidence 4578899999999999988777766654
No 112
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=87.13 E-value=1.4 Score=40.68 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCcH-HHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHHHH
Q psy8564 51 ENVMELWSGLGYY-SRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 51 ~~l~~~l~~~G~~-~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~ 109 (341)
+++..+++..|=. -|++.-.++|..|.. +...+ .+..+|.+|||||+++|+.|.-+.
T Consensus 20 ~~ia~l~e~~~~~~~rv~AYr~Aa~~l~~-l~~~i-~~~~~l~~LpGIG~~~A~kI~E~l 77 (335)
T 2fmp_A 20 TELANFEKNVSQAIHKYNAYRKAASVIAK-YPHKI-KSGAEAKKLPGVGTKIAEKIDEFL 77 (335)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH-CSSCC-CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHh-CCccc-cCHHHHhcCCCCcHHHHHHHHHHH
Confidence 3455555534422 388888888888765 33333 356679999999999999998774
No 113
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=87.11 E-value=1.4 Score=40.68 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHHHH
Q psy8564 65 RARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 65 rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~ 109 (341)
|++.-.++|..|.. +...+ .+.++|.+|||||+++|+.|.-+.
T Consensus 35 r~~AYr~Aa~~l~~-l~~~i-~~~~~l~~lpGIG~~~A~kI~E~l 77 (335)
T 2bcq_A 35 RALGYAKAINALKS-FHKPV-TSYQEACSIPGIGKRMAEKIIEIL 77 (335)
T ss_dssp HHHHHHHHHHHHHS-CCSCC-CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh-CCccc-cCHHHHhcCCCccHHHHHHHHHHH
Confidence 77777888888764 22222 346679999999999999998774
No 114
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=86.53 E-value=1.3 Score=41.80 Aligned_cols=57 Identities=9% Similarity=-0.046 Sum_probs=40.6
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHHHH
Q psy8564 51 ENVMELWSGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 51 ~~l~~~l~~~G~~~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~ 109 (341)
+++..++.-.|-.-|++.-.++|..|.. +...+ .+.++|.+|||||+++|+.|--+.
T Consensus 44 ~~ia~~~e~~g~~~rv~AYr~Aa~~l~~-l~~~i-~~~~~l~~lpGIG~~ia~kI~E~l 100 (381)
T 1jms_A 44 DILAENDELRENEGSCLAFMRASSVLKS-LPFPI-TSMKDTEGIPCLGDKVKSIIEGII 100 (381)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT-CSSCC-CSGGGGTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHh-CCccc-cCHHHHhcCCCCcHHHHHHHHHHH
Confidence 4455555556622388888999988865 33333 345579999999999999998775
No 115
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=86.41 E-value=1.7 Score=29.62 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=30.4
Q ss_pred HHHHHHHhCCCHHHHHhCCHHHHHHHHhhcCcHHHHHHHHHHH
Q psy8564 31 YYQRFLKKFPNIMSLAQAKLENVMELWSGLGYYSRARNLHICA 73 (341)
Q Consensus 31 ~~~~l~~~~pt~~~la~~~~~~l~~~l~~~G~~~rA~~i~~~a 73 (341)
-..+|+++|.|.++|.+|+.+||.++ +|-..+|+.|.+..
T Consensus 16 r~~~LL~~Fgs~~~i~~As~eeL~~v---ig~~~~A~~I~~~l 55 (63)
T 2a1j_A 16 NCRSLMHHVKNIAELAALSQDELTSI---LGNAANAKQLYDFI 55 (63)
T ss_dssp HHHHHHHHCSSHHHHHTCCHHHHHHH---HSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHCCHHHHHHH---cCchHHHHHHHHHH
Confidence 34678899999999999999999888 45322377776543
No 116
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=86.39 E-value=0.36 Score=41.10 Aligned_cols=46 Identities=26% Similarity=0.255 Sum_probs=31.6
Q ss_pred CCccchHHHhcCCCCCHHHHHHHHHHHhCCeeeccChhHHHHHHHHhccc
Q psy8564 83 IFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGIN 132 (341)
Q Consensus 83 ~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~~~~ 132 (341)
.+-.+.++|..|||||+++|..|+.+=-.-++-.+ .-+..|+.|+.
T Consensus 126 pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~----eDL~~RV~GIg 171 (205)
T 2i5h_A 126 SITTRMHQLELLPGVGKKMMWAIIEERKKRPFESF----EDIAQRVKGIQ 171 (205)
T ss_dssp CBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSH----HHHHHHSTTCC
T ss_pred CccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCH----HHHHHhcCCCC
Confidence 34456889999999999999999987432233222 23456667765
No 117
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=86.29 E-value=0.31 Score=38.70 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=11.2
Q ss_pred chHHHhcCCCCCHHHHHHHH
Q psy8564 87 NFISLINLPGIGQSTASAIR 106 (341)
Q Consensus 87 ~~~~L~~l~GIG~~tA~~il 106 (341)
+.++|.+||||||+.|..|.
T Consensus 61 ~~~eL~~LpGiGp~~A~~II 80 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIV 80 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHH
Confidence 34555555555555555555
No 118
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=86.24 E-value=0.38 Score=38.23 Aligned_cols=48 Identities=21% Similarity=0.469 Sum_probs=33.3
Q ss_pred HHHhCCHHHHHHHHhhcCcH-HHHHHHHHHHHHhHHHhCCCCccc-----hHHHhcCCCCCHHHHHHHHHHH
Q psy8564 44 SLAQAKLENVMELWSGLGYY-SRARNLHICAKLVFFKYNGIFPKN-----FISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 44 ~la~~~~~~l~~~l~~~G~~-~rA~~i~~~a~~i~~~~~g~~p~~-----~~~L~~l~GIG~~tA~~il~~~ 109 (341)
+|-.|+.++++. +. |.+ .+|+.|+ .. .++|.+++|||+++.+.+--+-
T Consensus 56 niNtA~~~eL~~-Lp--GiGp~~A~~II---------------~~GpF~svedL~~V~GIg~k~~e~l~~~~ 109 (134)
T 1s5l_U 56 DLNNTNIAAFIQ-YR--GLYPTLAKLIV---------------KNAPYESVEDVLNIPGLTERQKQILRENL 109 (134)
T ss_dssp ETTTSCGGGGGG-ST--TCTHHHHHHHH---------------HTCCCSSGGGGGGCTTCCHHHHHHHHHHH
T ss_pred eCcccCHHHHHH-CC--CCCHHHHHHHH---------------HcCCCCCHHHHHhCCCCCHHHHHHHHHhh
Confidence 455677777754 33 544 5666665 53 6899999999999887775443
No 119
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=85.83 E-value=0.52 Score=32.33 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=18.4
Q ss_pred hHHHhcCCCCCHHHHHHHHHHH
Q psy8564 88 FISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 88 ~~~L~~l~GIG~~tA~~il~~~ 109 (341)
...|.+|||||++++..+|..-
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~F 24 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHV 24 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHHHc
Confidence 3578899999999999888654
No 120
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=85.64 E-value=0.41 Score=35.99 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=20.1
Q ss_pred cchHHHhcCCCCCHHHHHHHHH
Q psy8564 86 KNFISLINLPGIGQSTASAIRV 107 (341)
Q Consensus 86 ~~~~~L~~l~GIG~~tA~~il~ 107 (341)
.+.++|.+|||||+++|..|..
T Consensus 23 As~~eL~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 23 TNIAAFIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp SCGGGGGGSTTCTTHHHHHHHH
T ss_pred CCHHHHhHCCCCCHHHHHHHHH
Confidence 3578999999999999999998
No 121
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=85.30 E-value=0.81 Score=46.29 Aligned_cols=89 Identities=21% Similarity=0.280 Sum_probs=52.3
Q ss_pred HHHHHHHHhC--CCHHHHHhCCHHHHHHHHhhcCcH-HHHHHHHHH-------------------------HHHhHHHhC
Q psy8564 30 PYYQRFLKKF--PNIMSLAQAKLENVMELWSGLGYY-SRARNLHIC-------------------------AKLVFFKYN 81 (341)
Q Consensus 30 ~~~~~l~~~~--pt~~~la~~~~~~l~~~l~~~G~~-~rA~~i~~~-------------------------a~~i~~~~~ 81 (341)
..+..|.+.. -|+.+|..+..++|..+ . ||. .+|.+|.+. |+.+.+.|+
T Consensus 452 k~i~~L~~~g~I~~~~DL~~L~~e~L~~l-~--g~G~Ksa~nLl~aIe~sk~~~l~R~L~alGI~~VG~~~Ak~La~~Fg 528 (667)
T 1dgs_A 452 KLIERLLEKGLVRDVADLYHLRKEDLLGL-E--RMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFG 528 (667)
T ss_dssp HHHHHHHHTTSCSSGGGGGGGCCHHHHTT-S--SCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCHHHHHhcCHHHHhcc-c--ccchhhHHHHHHHHHHHhcCcHHHhhHhhccCCccHHHHHHHHHHcC
Confidence 3455666665 38888888887666433 3 444 245555544 333334343
Q ss_pred C---CCccchHHHhcCCCCCHHHHHHHHHHHhCCeeeccChhHHHHHHHH
Q psy8564 82 G---IFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRV 128 (341)
Q Consensus 82 g---~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl 128 (341)
. -...+.++|.+++|||+++|+.|..|-- +-+.+.++.+|
T Consensus 529 sl~~l~~As~eeL~~I~GIG~~~A~sI~~ff~-------~~~~~~~i~~L 571 (667)
T 1dgs_A 529 TMDRLLEASLEELIEVEEVGELTARAILETLK-------DPAFRDLVRRL 571 (667)
T ss_dssp BHHHHTTCCHHHHHTSTTCCHHHHHHHHHHHH-------CHHHHHHHHHH
T ss_pred CHHHHHhCCHHHHHhccCcCHHHHHHHHHHHh-------hHHHHHHHHHH
Confidence 2 1134567888888888888888876642 23445555555
No 122
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=84.28 E-value=0.35 Score=36.38 Aligned_cols=57 Identities=14% Similarity=0.306 Sum_probs=39.1
Q ss_pred CCHHHHHhCCHHHHHHHHhhcCcHHHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHHH
Q psy8564 40 PNIMSLAQAKLENVMELWSGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 40 pt~~~la~~~~~~l~~~l~~~G~~~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~ 108 (341)
+.+-+|-.|+.++|.. +.|+|. .+|+.|.+ + |.+ .++++|.+++|||+++.+-+.-+
T Consensus 15 ~~~vdiNtAs~~eL~~-lpGIG~-~~A~~IV~--------~-GpF-~s~edL~~V~Gig~~~~e~l~~~ 71 (97)
T 3arc_U 15 GEKIDLNNTNIAAFIQ-YRGLYP-TLAKLIVK--------N-APY-ESVEDVLNIPGLTERQKQILREN 71 (97)
T ss_dssp GTSEETTTSCGGGGGG-STTCTT-HHHHHHHH--------H-CCC-SSGGGGGGCTTCCHHHHHHHHHT
T ss_pred CCceeCCcCCHHHHhH-CCCCCH-HHHHHHHH--------c-CCC-CCHHHHHhccCCCHHHHHHHHHH
Confidence 3444566778877754 455553 46666666 2 433 46899999999999998887654
No 123
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=82.24 E-value=1.8 Score=31.69 Aligned_cols=42 Identities=7% Similarity=-0.081 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHHH
Q psy8564 65 RARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 65 rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~ 108 (341)
++....+++..+.. |...+ .+..++..|+|||+++++.+-.+
T Consensus 36 ~~~~Y~KA~~sLk~-~P~~i-~s~~e~~~L~giG~ki~~~L~e~ 77 (87)
T 2kp7_A 36 TRFVFQKALRSLQR-YPLPL-RSGKEAKILQHFGDRLCRMLDEK 77 (87)
T ss_dssp THHHHHHHHHHHHH-CCSCC-CSHHHHHTCTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCC-CCHHHHHHhhcccHHHHHHHHHH
Confidence 45566667777665 32222 46789999999999999887543
No 124
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=81.69 E-value=2.4 Score=42.82 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=44.8
Q ss_pred HHHHHHHhC--CCHHHHHhCCHHHHHHHHhhcCcHH-HHHHHHHHH-------------------------HHhHHHhCC
Q psy8564 31 YYQRFLKKF--PNIMSLAQAKLENVMELWSGLGYYS-RARNLHICA-------------------------KLVFFKYNG 82 (341)
Q Consensus 31 ~~~~l~~~~--pt~~~la~~~~~~l~~~l~~~G~~~-rA~~i~~~a-------------------------~~i~~~~~g 82 (341)
.+..|.+.. -++.+|..+..++|..+ -||.. .|.+|.+.. +.+.+.|++
T Consensus 458 ~i~~L~~~g~I~~~aDL~~L~~~~L~~l---~gfG~Ksa~nLl~aIe~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fgs 534 (671)
T 2owo_A 458 IIDQLVEKEYVHTPADLFKLTAGKLTGL---ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGT 534 (671)
T ss_dssp HHHHHHHTTCCSSGGGGGTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCCCCHHHHHhhCHHHhhcc---cccchhHHHHHHHHHHHHhcCChhheehhhcccCccHHHHHHHHHHcCC
Confidence 345565553 48888999987776432 35553 566666552 222223322
Q ss_pred ---CCccchHHHhcCCCCCHHHHHHHHHHH
Q psy8564 83 ---IFPKNFISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 83 ---~~p~~~~~L~~l~GIG~~tA~~il~~~ 109 (341)
-...+.++|.+++|||+++|..|..|-
T Consensus 535 l~~l~~As~eeL~~i~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 535 LEALEAASIEELQKVPDVGIVVASHVHNFF 564 (671)
T ss_dssp HHHHHTCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHhhcCCCCHHHHHHHHHHH
Confidence 012345777888888888888776654
No 125
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=81.64 E-value=2.7 Score=30.53 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCHHHHHhCCHHHHHHHHhhcCcHHHHHHHHHHH
Q psy8564 31 YYQRFLKKFPNIMSLAQAKLENVMELWSGLGYYSRARNLHICA 73 (341)
Q Consensus 31 ~~~~l~~~~pt~~~la~~~~~~l~~~l~~~G~~~rA~~i~~~a 73 (341)
-..+|+..|.++++|.+|+.+||.++ +|-..+|+.|.+..
T Consensus 30 r~~~LL~~FgSl~~i~~AS~eEL~~v---ig~~~~A~~I~~~l 69 (84)
T 1z00_B 30 NCRSLMHHVKNIAELAALSQDELTSI---LGNAANAKQLYDFI 69 (84)
T ss_dssp HHHHHHHHSSCHHHHHHSCHHHHHHH---HSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHCCHHHHHHH---hCchHHHHHHHHHH
Confidence 34678899999999999999999888 45323477776644
No 126
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=81.46 E-value=0.81 Score=33.38 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=20.6
Q ss_pred cchHHHhcCCCCCHHHHHHHHHHHhC
Q psy8564 86 KNFISLINLPGIGQSTASAIRVFAYG 111 (341)
Q Consensus 86 ~~~~~L~~l~GIG~~tA~~il~~~~~ 111 (341)
.....|..|||||++.+..+|.....
T Consensus 15 ~~~s~L~~IpGIG~kr~~~LL~~FgS 40 (84)
T 1z00_B 15 GPQDFLLKMPGVNAKNCRSLMHHVKN 40 (84)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHSSC
T ss_pred cHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 34677999999999999988865433
No 127
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=80.80 E-value=0.96 Score=33.80 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.5
Q ss_pred chHHHhcCCCCCHHHHHHHHHHH
Q psy8564 87 NFISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 87 ~~~~L~~l~GIG~~tA~~il~~~ 109 (341)
+.++|.++||||+++|..|+..-
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHHH
Confidence 56789999999999999999873
No 128
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=79.19 E-value=1.7 Score=37.33 Aligned_cols=17 Identities=47% Similarity=0.696 Sum_probs=8.8
Q ss_pred HhcCCCCCHHHHHHHHH
Q psy8564 91 LINLPGIGQSTASAIRV 107 (341)
Q Consensus 91 L~~l~GIG~~tA~~il~ 107 (341)
|..+||||+++|..++.
T Consensus 164 L~~i~gVg~~~a~~Ll~ 180 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILE 180 (219)
T ss_dssp HHTSTTCCHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHH
Confidence 44555555555555544
No 129
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=79.01 E-value=1.1 Score=38.71 Aligned_cols=43 Identities=33% Similarity=0.550 Sum_probs=28.5
Q ss_pred hHHHhcCCCCCHHHHHHHHHHHhCCee---eccChhHHHHHHHHhccc
Q psy8564 88 FISLINLPGIGQSTASAIRVFAYGKRN---AILDGNVKRILIRVLGIN 132 (341)
Q Consensus 88 ~~~L~~l~GIG~~tA~~il~~~~~~~~---~~vD~~v~Rvl~Rl~~~~ 132 (341)
...|.+++||||++|..|+.. |+... .+++.+..++ .++-|+.
T Consensus 87 f~~L~sv~GIGpk~A~~Ils~-~~~~~l~~aI~~~d~~~L-~~vpGIG 132 (212)
T 2ztd_A 87 FLTLLSVSGVGPRLAMAALAV-HDAPALRQVLADGNVAAL-TRVPGIG 132 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH-SCHHHHHHHHHTTCHHHH-HTSTTCC
T ss_pred HHHhcCcCCcCHHHHHHHHHh-CCHHHHHHHHHhCCHHHH-hhCCCCC
Confidence 456889999999999999974 44322 2556666554 4444443
No 130
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=78.62 E-value=1.2 Score=37.74 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=17.9
Q ss_pred HHHhcCCCCCHHHHHHHHHH
Q psy8564 89 ISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 89 ~~L~~l~GIG~~tA~~il~~ 108 (341)
..|.+++||||++|..+|..
T Consensus 72 ~~L~~v~GIGpk~A~~iL~~ 91 (191)
T 1ixr_A 72 ELLLSVSGVGPKVALALLSA 91 (191)
T ss_dssp HHHHSSSCCCHHHHHHHHHH
T ss_pred HHHhcCCCcCHHHHHHHHHh
Confidence 46889999999999999975
No 131
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=77.10 E-value=5.6 Score=37.69 Aligned_cols=70 Identities=19% Similarity=0.397 Sum_probs=33.7
Q ss_pred HHHHHhCCCHHHHHhCCHHHHHHHHhhcCcH-HHHHHHHHH------------HHHhHHHhCCC------Cc--------
Q psy8564 33 QRFLKKFPNIMSLAQAKLENVMELWSGLGYY-SRARNLHIC------------AKLVFFKYNGI------FP-------- 85 (341)
Q Consensus 33 ~~l~~~~pt~~~la~~~~~~l~~~l~~~G~~-~rA~~i~~~------------a~~i~~~~~g~------~p-------- 85 (341)
..+..+|.+..++..++.+++ +.+||+ ++...|+.+ |..+.+.|+.- +|
T Consensus 532 ~elkr~ygs~savr~~pv~el----relg~sd~~ia~ikgip~~~~~~~~~e~a~~l~er~~~~~~~~~~~~~~~l~~~g 607 (685)
T 4gfj_A 532 DELKRKYGSASAVRRLPVEEL----RELGFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSLKEIGRRLSYDDLLELG 607 (685)
T ss_dssp HHHHHHSSCHHHHHHSCHHHH----HTTSCCHHHHHHHHTCCHHHHHHSCHHHHHHHHHHHSSSTGGGGSCGGGCCSSSC
T ss_pred HHHHHhhccHHHHHhccHHHH----HHcCCchhhHHHhcCCcHHHHhhcCHHHHHHHHHHhccHHHHhhcCCHHHHhccC
Confidence 357888999999999999886 678998 455555543 45555566541 11
Q ss_pred -----------cchHHHhcCCCCCHHHHHHHH
Q psy8564 86 -----------KNFISLINLPGIGQSTASAIR 106 (341)
Q Consensus 86 -----------~~~~~L~~l~GIG~~tA~~il 106 (341)
...+.|+.++||||+.|+-++
T Consensus 608 ~~~~~~~eik~p~~k~ll~~~gv~p~la~r~~ 639 (685)
T 4gfj_A 608 ATPKAAAEIKGPEFKFLLNIEGVGPKLAERIL 639 (685)
T ss_dssp CGGGC---------------------------
T ss_pred CCHHHHHHhcChhHHHhhcccCCCHHHHHHHH
Confidence 114567777777777777665
No 132
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=76.91 E-value=2.4 Score=39.71 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCHHHHHhCCHHHHHHHHhhcCcHHHHHHHHHHHHHhHHH
Q psy8564 31 YYQRFLKKFPNIMSLAQAKLENVMELWSGLGYYSRARNLHICAKLVFFK 79 (341)
Q Consensus 31 ~~~~l~~~~pt~~~la~~~~~~l~~~l~~~G~~~rA~~i~~~a~~i~~~ 79 (341)
..++|.++|.|++.+.+|+.+||.+. .|+|= .||+.|++....+..+
T Consensus 327 iae~Lv~~FGsLq~Il~AS~eEL~~V-eGIGe-~rAr~IregL~r~~~~ 373 (377)
T 3c1y_A 327 IGYNVVRMFKTLDQISKASVEDLKKV-EGIGE-KRARAISESISSLKHR 373 (377)
T ss_dssp HHHHHHHHHCSHHHHTTCCHHHHTTS-TTCCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhCCHHHHHhc-cCccH-HHHHHHHHHHHHHhcc
Confidence 45678888899999999999888554 55552 4888888888777653
No 133
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=73.49 E-value=2.3 Score=30.99 Aligned_cols=24 Identities=8% Similarity=0.238 Sum_probs=19.5
Q ss_pred chHHHhcCCCCCHHHHHHHHHHHhC
Q psy8564 87 NFISLINLPGIGQSTASAIRVFAYG 111 (341)
Q Consensus 87 ~~~~L~~l~GIG~~tA~~il~~~~~ 111 (341)
....|..+||||+++|..++.. ||
T Consensus 17 ~~~~L~~IpgIG~~~A~~Ll~~-fg 40 (89)
T 1z00_A 17 VTECLTTVKSVNKTDSQTLLTT-FG 40 (89)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHH-TC
T ss_pred HHHHHHcCCCCCHHHHHHHHHH-CC
Confidence 3567889999999999998875 44
No 134
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=73.45 E-value=1.8 Score=37.07 Aligned_cols=20 Identities=35% Similarity=0.300 Sum_probs=17.7
Q ss_pred HHHhcCCCCCHHHHHHHHHH
Q psy8564 89 ISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 89 ~~L~~l~GIG~~tA~~il~~ 108 (341)
..|.+++||||++|-.+|..
T Consensus 73 ~~L~~V~GIGpk~A~~iL~~ 92 (203)
T 1cuk_A 73 KELIKTNGVGPKLALAILSG 92 (203)
T ss_dssp HHHHHSSSCCHHHHHHHHHH
T ss_pred HHHhcCCCcCHHHHHHHHhh
Confidence 46889999999999999984
No 135
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=73.02 E-value=1.6 Score=31.02 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=19.1
Q ss_pred hHHHhcCCCCCHHHHHHHHHHHhC
Q psy8564 88 FISLINLPGIGQSTASAIRVFAYG 111 (341)
Q Consensus 88 ~~~L~~l~GIG~~tA~~il~~~~~ 111 (341)
...|..+||||+++|..++.. |+
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~-fg 45 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKY-MG 45 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHH-HS
T ss_pred HHHHhcCCCCCHHHHHHHHHH-cC
Confidence 456889999999999998876 54
No 136
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=72.02 E-value=18 Score=32.06 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=44.5
Q ss_pred HHHHHHhCCCHHHHHhCCHHHHHHHHhhcCcHHHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHHHHhC
Q psy8564 32 YQRFLKKFPNIMSLAQAKLENVMELWSGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYG 111 (341)
Q Consensus 32 ~~~l~~~~pt~~~la~~~~~~l~~~l~~~G~~~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~~~ 111 (341)
...+++.|-+...+...+.++++.+.....++.-| ..+|-.| ...+|.+-.|||+|||+-+| .+||
T Consensus 367 adeliehfesiagilatdleeiermyeegrlseea---yraavei----------qlaeltkkegvgrktaerll-rafg 432 (519)
T 2csb_A 367 ADELIEHFESIAGILATDLEEIERMYEEGRLSEEA---YRAAVEI----------QLAELTKKEGVGRKTAERLL-RAFG 432 (519)
T ss_dssp HHHHHHHHSSHHHHHTSCHHHHHHHHHHTSSCHHH---HHHHHHH----------HHHHHHTSTTCCHHHHHHHH-HHHS
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHcccccHHH---HHHHHHH----------HHHHHhhhcccchhHHHHHH-HHhC
Confidence 34567778888888888998888887665554211 1112121 24567777899999998755 4666
Q ss_pred Ce
Q psy8564 112 KR 113 (341)
Q Consensus 112 ~~ 113 (341)
.|
T Consensus 433 np 434 (519)
T 2csb_A 433 NP 434 (519)
T ss_dssp SH
T ss_pred CH
Confidence 54
No 137
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=70.47 E-value=3 Score=30.52 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=18.8
Q ss_pred hHHHhcCCCCCHHHHHHHHHHHhC
Q psy8564 88 FISLINLPGIGQSTASAIRVFAYG 111 (341)
Q Consensus 88 ~~~L~~l~GIG~~tA~~il~~~~~ 111 (341)
...|..+||||+++|..++.. ||
T Consensus 31 ~~~L~~IpgIG~~~A~~Ll~~-fg 53 (91)
T 2a1j_B 31 TECLTTVKSVNKTDSQTLLTT-FG 53 (91)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-HS
T ss_pred HHHHHcCCCCCHHHHHHHHHH-CC
Confidence 456889999999999988764 55
No 138
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=70.03 E-value=3.5 Score=38.54 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=19.0
Q ss_pred HHHhHHHhCC---CCccchHHHhcCCCCCHHHHHHH
Q psy8564 73 AKLVFFKYNG---IFPKNFISLINLPGIGQSTASAI 105 (341)
Q Consensus 73 a~~i~~~~~g---~~p~~~~~L~~l~GIG~~tA~~i 105 (341)
++.++++||. -+..+.++|.++.|||++.|..|
T Consensus 328 ae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~I 363 (377)
T 3c1y_A 328 GYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAI 363 (377)
T ss_dssp HHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHHH
Confidence 5555555543 13345666666666666666554
No 139
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=68.27 E-value=3.7 Score=28.42 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=18.8
Q ss_pred hHHHhcCCCCCHHHHHHHHHHHhC
Q psy8564 88 FISLINLPGIGQSTASAIRVFAYG 111 (341)
Q Consensus 88 ~~~L~~l~GIG~~tA~~il~~~~~ 111 (341)
...|..+||||+++|..++.. ||
T Consensus 13 ~~~L~~i~giG~~~a~~Ll~~-fg 35 (75)
T 1x2i_A 13 RLIVEGLPHVSATLARRLLKH-FG 35 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-HC
T ss_pred HHHHcCCCCCCHHHHHHHHHH-cC
Confidence 456889999999999998874 55
No 140
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=67.31 E-value=6.8 Score=37.09 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=29.7
Q ss_pred HHHHHHhCCCHHHHHhCCHHHHHHHHhhcCcHHHHHHHHHHH
Q psy8564 32 YQRFLKKFPNIMSLAQAKLENVMELWSGLGYYSRARNLHICA 73 (341)
Q Consensus 32 ~~~l~~~~pt~~~la~~~~~~l~~~l~~~G~~~rA~~i~~~a 73 (341)
.++|.++|+|.+.+++|+++||.. .|+|= .+|+.|+.+-
T Consensus 481 AeRLLEkFGSVe~Vm~AteDELRe--dGIGe-kqarrI~gl~ 519 (685)
T 4gfj_A 481 AERLLKKYGGYSKVREAGVEELRE--DGLTD-AQIRELKGLK 519 (685)
T ss_dssp HHHHHHHHTSHHHHHHSCHHHHHH--TTCCH-HHHHHHHTCH
T ss_pred HHHHHHHhcCHHHHHhCCHHHHHH--ccccH-HHHHHHhhHH
Confidence 467899999999999999999955 55552 3677766553
No 141
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=63.79 E-value=2.8 Score=38.74 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.8
Q ss_pred ccchHHHhcCCCCCHHHHHHHHHH
Q psy8564 85 PKNFISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 85 p~~~~~L~~l~GIG~~tA~~il~~ 108 (341)
|....+|+++||||++||..+-.-
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHc
Confidence 667899999999999999988544
No 142
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=63.41 E-value=8.1 Score=27.19 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=29.1
Q ss_pred hhcCcHHHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHH
Q psy8564 58 SGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRV 107 (341)
Q Consensus 58 ~~~G~~~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~ 107 (341)
..++++.||.+..+-+..-.- +.-+.-+.++|++++|+|+++.+-|..
T Consensus 12 e~L~LS~Ra~NcLkragI~Tv--~dL~~~s~~dLlki~n~G~kSl~EI~~ 59 (73)
T 1z3e_B 12 EELDLSVRSYNCLKRAGINTV--QELANKTEEDMMKVRNLGRKSLEEVKA 59 (73)
T ss_dssp GGSCCBHHHHHHHHHTTCCBH--HHHHTSCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHcCCCcH--HHHHcCCHHHHHHcCCCCHHHHHHHHH
Confidence 456777777766554321100 001123678899999999998877654
No 143
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=63.12 E-value=8.2 Score=27.12 Aligned_cols=21 Identities=29% Similarity=0.675 Sum_probs=17.7
Q ss_pred CccchHHHhcCCCCCHHHHHH
Q psy8564 84 FPKNFISLINLPGIGQSTASA 104 (341)
Q Consensus 84 ~p~~~~~L~~l~GIG~~tA~~ 104 (341)
.|.+.++|.+++|||++..+-
T Consensus 42 ~P~t~~eL~~i~Gvg~~k~~~ 62 (77)
T 2rhf_A 42 QPRTLAELAEVPGLGEKRIEA 62 (77)
T ss_dssp CCCSHHHHTTSTTTCHHHHHH
T ss_pred CCCCHHHHhhCCCCCHHHHHH
Confidence 588999999999999876543
No 144
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=63.07 E-value=9 Score=27.89 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=30.7
Q ss_pred hhcCcHHHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHHH
Q psy8564 58 SGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 58 ~~~G~~~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~ 108 (341)
..++++.||.+..+-|..-.- +.-+..+.++|++++|+|+++.+-|...
T Consensus 15 ~~L~LSvRa~NcLkragI~Tv--~dL~~~se~dLlki~n~G~KSl~EI~~~ 63 (86)
T 3k4g_A 15 DDLELTVRSANCLXAEAIHYI--GDLVQRTEVELLXTPNLGXXSLTEIXDV 63 (86)
T ss_dssp GGGCCCHHHHHHHHHTTCCBH--HHHHHSCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHcCCCcH--HHHHhCCHHHHhhccccCcccHHHHHHH
Confidence 446777777776555422100 0011236789999999999998887654
No 145
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=61.77 E-value=3.1 Score=38.78 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=21.3
Q ss_pred CCccchHHHhcCCCCCHHHHHHHHHH
Q psy8564 83 IFPKNFISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 83 ~~p~~~~~L~~l~GIG~~tA~~il~~ 108 (341)
..|..+.+|+++||||++||..+-.-
T Consensus 96 ~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 96 ERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 34666789999999999999988543
No 146
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=60.80 E-value=3.9 Score=40.61 Aligned_cols=25 Identities=16% Similarity=0.529 Sum_probs=22.0
Q ss_pred CccchHHHhcCCCCCHHHHHHHHHH
Q psy8564 84 FPKNFISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 84 ~p~~~~~L~~l~GIG~~tA~~il~~ 108 (341)
.+.....|++++||||++|..++.-
T Consensus 92 ~~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 92 LPPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp SCHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hHHHHHHHhCCCCcCHHHHHHHHHc
Confidence 4667888999999999999999975
No 147
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=60.53 E-value=37 Score=23.69 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=51.8
Q ss_pred HHHHHHhhhcChhhHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhhcCcHHHHHHHHHHHHHhHHHhCC
Q psy8564 14 WLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGYYSRARNLHICAKLVFFKYNG 82 (341)
Q Consensus 14 lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~~~~~~l~~~l~~~G~~~rA~~i~~~a~~i~~~~~g 82 (341)
|+..++..-.....+.+|...|.+.--+.+-|..++.+ .|+.+|+ |-.=|+++.+.+..+|+.
T Consensus 5 Wf~FFl~aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~----~Lr~LGi--~eGDIIrVmk~l~~k~~r 67 (72)
T 3idw_A 5 WFEFFLNCGVDVSNCQRYTINFDREQLTEDMMPDINNS----MLRTLGL--REGDIVRVMKHLDKKFGR 67 (72)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTCCGGGGGGCCHH----HHHHTTC--CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHccCCHHHHhhCCHH----HHHHcCC--chhhHHHHHHHHHHHhCc
Confidence 67778888889999999999998888888888888884 4578899 567788888888887764
No 148
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=60.02 E-value=8.7 Score=28.38 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=26.9
Q ss_pred hHHHhcCCCCCHHHHHHHHHHHhCCeeeccChhHHHHHHHHh
Q psy8564 88 FISLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVL 129 (341)
Q Consensus 88 ~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~ 129 (341)
+.+|..||+||++++..+...+..-..-.-+........|+.
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~ 44 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIW 44 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHH
Confidence 457899999999999988776655433233333344444443
No 149
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=59.43 E-value=2.5 Score=30.34 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=31.3
Q ss_pred hhcCcHHHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHH
Q psy8564 58 SGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRV 107 (341)
Q Consensus 58 ~~~G~~~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~ 107 (341)
..++++.||.+..+-|..-.- +.-+..+.++|++++|+|+++.+-|..
T Consensus 19 e~L~LS~Ra~NcLk~agI~Tv--~dL~~~se~dLlki~n~G~kSl~EI~~ 66 (79)
T 3gfk_B 19 EELDLSVRSYNCLKRAGINTV--QELANKTEEDMMKVRNLGRKSLEEVKA 66 (79)
T ss_dssp GGSCCBHHHHHHHHHTTCCBH--HHHTTCCHHHHTTSTTCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHhCCCCH--HHHHhCCHHHHHHcCCCCHhHHHHHHH
Confidence 456777788776665532110 011234678999999999999887764
No 150
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=59.06 E-value=2 Score=37.80 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=8.9
Q ss_pred HHHHHHHhcCCc
Q psy8564 264 EIKKFISSFGFI 275 (341)
Q Consensus 264 ~~rE~~ee~g~~ 275 (341)
.+++.-.++|+.
T Consensus 217 ~i~~~A~~~gik 228 (241)
T 1vq8_Y 217 RIEEEAEDAGIR 228 (241)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCc
Confidence 567777788875
No 151
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=58.85 E-value=14 Score=33.70 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=33.6
Q ss_pred hhcCcHHHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHH
Q psy8564 58 SGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIR 106 (341)
Q Consensus 58 ~~~G~~~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il 106 (341)
...|+.+ |.++.++++.|.. |.++.+ ..|.+|||||+..+..+-
T Consensus 131 ~~~g~~~-~~~~l~L~q~i~q---~~w~~~-~pL~Qlp~i~~~~~~~l~ 174 (328)
T 3im1_A 131 SANGYLN-ATTAMDLAQMLIQ---GVWDVD-NPLRQIPHFNNKILEKCK 174 (328)
T ss_dssp HHTTBTT-HHHHHHHHHHHHH---TSCTTS-CGGGGSTTCCHHHHHHHH
T ss_pred HcCCcHH-HHHHHHHHHHHHh---hcCCCC-CceeCCCCCCHHHHHHHH
Confidence 3467667 8899999999986 555544 569999999998887643
No 152
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=58.69 E-value=6.8 Score=36.08 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=16.5
Q ss_pred hHHHhcCCCCCHHHHHHHHHH
Q psy8564 88 FISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 88 ~~~L~~l~GIG~~tA~~il~~ 108 (341)
.+.|.++||||++||..+-.-
T Consensus 95 l~ll~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 95 LELFSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT
T ss_pred HHHHhcCCCcCHHHHHHHHHc
Confidence 444569999999999988543
No 153
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=57.25 E-value=11 Score=27.28 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=16.9
Q ss_pred CccchHHHhcCCCCCHHHHH
Q psy8564 84 FPKNFISLINLPGIGQSTAS 103 (341)
Q Consensus 84 ~p~~~~~L~~l~GIG~~tA~ 103 (341)
.|.+.++|.+++|||+....
T Consensus 50 ~P~t~~eL~~i~Gvg~~k~~ 69 (89)
T 1wud_A 50 MPITASEMLSVNGVGMRKLE 69 (89)
T ss_dssp CCCSHHHHHTSTTCCHHHHH
T ss_pred CCCCHHHHhhCCCCCHHHHH
Confidence 58899999999999985543
No 154
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=57.21 E-value=9.1 Score=27.54 Aligned_cols=19 Identities=11% Similarity=0.291 Sum_probs=16.4
Q ss_pred CccchHHHhcCCCCCHHHH
Q psy8564 84 FPKNFISLINLPGIGQSTA 102 (341)
Q Consensus 84 ~p~~~~~L~~l~GIG~~tA 102 (341)
.|.+.++|..++|||+...
T Consensus 44 ~P~t~~eL~~i~Gvg~~k~ 62 (85)
T 2kv2_A 44 LSSDPEVLLQIDGVTEDKL 62 (85)
T ss_dssp CCSCHHHHHTSSSCCHHHH
T ss_pred CCCCHHHHhhCCCCCHHHH
Confidence 5889999999999998643
No 155
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=57.17 E-value=4.2 Score=38.23 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=21.4
Q ss_pred CCccchHHHhcCCCCCHHHHHHHHHH
Q psy8564 83 IFPKNFISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 83 ~~p~~~~~L~~l~GIG~~tA~~il~~ 108 (341)
..|..+.+|++++|||++||..+-.-
T Consensus 115 ~~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 115 ERYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchhHHHHHHccCCCCHHHHHHHHHc
Confidence 45667889999999999999988543
No 156
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=57.04 E-value=6.2 Score=30.39 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=30.1
Q ss_pred CCccc---hHHHhcCCCCCHHHHHHHHHHHhCCe-e---eccChhHHHHHHHH
Q psy8564 83 IFPKN---FISLINLPGIGQSTASAIRVFAYGKR-N---AILDGNVKRILIRV 128 (341)
Q Consensus 83 ~~p~~---~~~L~~l~GIG~~tA~~il~~~~~~~-~---~~vD~~v~Rvl~Rl 128 (341)
++|.. .-.|..|.|||+.+|..|+.-+.=.+ . -.-|..+.++..-+
T Consensus 7 ~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 7 NIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEV 59 (114)
T ss_dssp CCCCSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHH
T ss_pred cCCCCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHH
Confidence 45543 56799999999999999998763222 1 12344555555444
No 157
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=56.09 E-value=5.3 Score=39.64 Aligned_cols=25 Identities=24% Similarity=0.562 Sum_probs=21.7
Q ss_pred CccchHHHhcCCCCCHHHHHHHHHH
Q psy8564 84 FPKNFISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 84 ~p~~~~~L~~l~GIG~~tA~~il~~ 108 (341)
.+.....|++++||||++|..++..
T Consensus 88 ~~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 88 VPRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp SCHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred hHHHHHHHhcCCCcCHHHHHHHHHh
Confidence 3566889999999999999999875
No 158
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=53.60 E-value=9.8 Score=26.44 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=30.9
Q ss_pred HHHHH-hCCCHHHHHhCCHHHHHHHHhhcCcH-HHHHHHHHHHHH
Q psy8564 33 QRFLK-KFPNIMSLAQAKLENVMELWSGLGYY-SRARNLHICAKL 75 (341)
Q Consensus 33 ~~l~~-~~pt~~~la~~~~~~l~~~l~~~G~~-~rA~~i~~~a~~ 75 (341)
.+|.+ .+-|.++||.++.++|... .|+. .||..|+..|+.
T Consensus 21 ~kL~e~Gi~TvedlA~~~~~eL~~i---~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 21 FKLAARGVCTLEDLAEQGIDDLADI---EGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHHTTTCCSHHHHHTSCHHHHHTS---SSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHcCCHHHHHHc---cCCCHHHHHHHHHHHHH
Confidence 45554 4779999999999988664 4777 589999988886
No 159
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=53.33 E-value=2.8 Score=41.89 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=0.0
Q ss_pred chHHHhcCCCCCHHHHHHHHHHH
Q psy8564 87 NFISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 87 ~~~~L~~l~GIG~~tA~~il~~~ 109 (341)
+.++|.+++|||+++|..|..|-
T Consensus 559 s~eeL~~I~GIG~~~A~sI~~ff 581 (615)
T 3sgi_A 559 STDQLAAVEGVGPTIAAAVTEWF 581 (615)
T ss_dssp -----------------------
T ss_pred CHHHHhhCCCCCHHHHHHHHHHH
Confidence 45778888888888888887664
No 160
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=53.30 E-value=7.8 Score=31.20 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=27.5
Q ss_pred hHHHhcCCCCCHHHHHHHHHHHhCCe----eeccChhHHHHHHHH
Q psy8564 88 FISLINLPGIGQSTASAIRVFAYGKR----NAILDGNVKRILIRV 128 (341)
Q Consensus 88 ~~~L~~l~GIG~~tA~~il~~~~~~~----~~~vD~~v~Rvl~Rl 128 (341)
.-.|..|.|||+.+|..|+.-+.=.+ .-.-|..+.++..-+
T Consensus 29 ~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i 73 (146)
T 3u5c_S 29 VYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIM 73 (146)
T ss_dssp TTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHH
T ss_pred HhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHH
Confidence 56799999999999999998774222 112344555554443
No 161
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=53.09 E-value=12 Score=28.03 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=17.9
Q ss_pred CccchHHHhcCCCCCHHHHHH
Q psy8564 84 FPKNFISLINLPGIGQSTASA 104 (341)
Q Consensus 84 ~p~~~~~L~~l~GIG~~tA~~ 104 (341)
.|.+.++|..|+|||+.-..-
T Consensus 52 ~P~t~~eL~~I~Gvg~~K~~~ 72 (103)
T 2e1f_A 52 RPTTVENVKRIDGVSEGKAAM 72 (103)
T ss_dssp CCCSHHHHTTSTTCCHHHHHH
T ss_pred CCCCHHHHhcCCCCCHHHHHH
Confidence 588999999999999966554
No 162
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=50.02 E-value=11 Score=27.83 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=20.3
Q ss_pred hHHHhcCCCCCHHHHHHHHHHHhCC
Q psy8564 88 FISLINLPGIGQSTASAIRVFAYGK 112 (341)
Q Consensus 88 ~~~L~~l~GIG~~tA~~il~~~~~~ 112 (341)
+.+|..||+||+.++..+...+..-
T Consensus 3 m~~L~dLPNig~~~e~~L~~~GI~t 27 (93)
T 3mab_A 3 LANLSELPNIGKVLEQDLIKAGIKT 27 (93)
T ss_dssp CCCGGGSTTCCHHHHHHHHHTTCCS
T ss_pred HHHHhhCCCCCHHHHHHHHHcCCCC
Confidence 4678999999999998887776554
No 163
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=49.91 E-value=10 Score=30.73 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=30.0
Q ss_pred CCccc---hHHHhcCCCCCHHHHHHHHHHHhCCe-e---eccChhHHHHHHHH
Q psy8564 83 IFPKN---FISLINLPGIGQSTASAIRVFAYGKR-N---AILDGNVKRILIRV 128 (341)
Q Consensus 83 ~~p~~---~~~L~~l~GIG~~tA~~il~~~~~~~-~---~~vD~~v~Rvl~Rl 128 (341)
++|.. .-.|..|.|||+.+|..|+.-+.=.+ . -.-|..+.++..-+
T Consensus 19 ~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i 71 (152)
T 3iz6_M 19 NVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVV 71 (152)
T ss_dssp CCCCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHH
T ss_pred cCCCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHH
Confidence 45543 56899999999999999998774222 1 12344555554443
No 164
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.86 E-value=9.1 Score=30.85 Aligned_cols=40 Identities=25% Similarity=0.176 Sum_probs=27.3
Q ss_pred hHHHhcCCCCCHHHHHHHHHHHhCCe----eeccChhHHHHHHH
Q psy8564 88 FISLINLPGIGQSTASAIRVFAYGKR----NAILDGNVKRILIR 127 (341)
Q Consensus 88 ~~~L~~l~GIG~~tA~~il~~~~~~~----~~~vD~~v~Rvl~R 127 (341)
.-.|..|.|||+.+|..|+.-+.=.+ .-.-|..+.++..-
T Consensus 22 ~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~ 65 (148)
T 3j20_O 22 RWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEI 65 (148)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHH
T ss_pred hhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHH
Confidence 56899999999999999998774222 12234455555443
No 165
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=49.26 E-value=15 Score=27.36 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=17.1
Q ss_pred CccchHHHhcCCCCCHHHHH
Q psy8564 84 FPKNFISLINLPGIGQSTAS 103 (341)
Q Consensus 84 ~p~~~~~L~~l~GIG~~tA~ 103 (341)
.|.+.++|..|+|||+.-..
T Consensus 59 ~P~t~~eL~~I~Gvg~~k~~ 78 (101)
T 2rrd_A 59 LSSDPEVLLQIDGVTEDKLE 78 (101)
T ss_dssp CCCCHHHHHTSTTCCHHHHH
T ss_pred CCCCHHHHhhCCCCCHHHHH
Confidence 58899999999999986544
No 166
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=47.23 E-value=10 Score=30.76 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.9
Q ss_pred hHHHhcCCCCCHHHHHHHHHHH
Q psy8564 88 FISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 88 ~~~L~~l~GIG~~tA~~il~~~ 109 (341)
.-.|..|+|||+.+|..|+.-+
T Consensus 29 ~~aLt~I~GIG~~~A~~I~~~~ 50 (155)
T 2xzm_M 29 PIALTGIRGIGRRFAYIICKVL 50 (155)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHT
T ss_pred EEeeecccccCHHHHHHHHHHc
Confidence 5689999999999999999876
No 167
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=45.90 E-value=41 Score=30.59 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=33.3
Q ss_pred hhcCcHHHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHH
Q psy8564 58 SGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIR 106 (341)
Q Consensus 58 ~~~G~~~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il 106 (341)
...|+.+-|.++.++++.|.. |.++.+ ..|.+|||||+..+..+-
T Consensus 134 ~~~g~~~~~~~~l~L~q~i~q---~~w~~~-~pL~Qlp~i~~~~~~~l~ 178 (339)
T 2q0z_X 134 SSNGWLSPALAAMELAQMVTQ---AMWSKD-SYLKQLPHFTSEHIKRCT 178 (339)
T ss_dssp HHTTBHHHHHHHHHHHHHHHH---TCCTTS-CGGGGSTTCCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHH---hcCCCC-CceecCCCCCHHHHHHHH
Confidence 345666668889999999987 444433 479999999998877653
No 168
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=43.61 E-value=12 Score=29.29 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=22.4
Q ss_pred CCCccc---hHHHhcCCCCCHHHHHHHHHHH
Q psy8564 82 GIFPKN---FISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 82 g~~p~~---~~~L~~l~GIG~~tA~~il~~~ 109 (341)
-++|.. .-.|..|.|||+.+|..|+.-+
T Consensus 7 ~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~ 37 (126)
T 2vqe_M 7 VEIPRNKRVDVALTYIYGIGKARAKEALEKT 37 (126)
T ss_dssp TCCCCSSBHHHHHTTSSSCCSHHHHHHTTTT
T ss_pred ccCCCCcEeeeehhccccccHHHHHHHHHHc
Confidence 356644 5689999999999999998765
No 169
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=42.97 E-value=5.1 Score=34.77 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=0.0
Q ss_pred hHHHhcCCCCCHHHHHHHHHH
Q psy8564 88 FISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 88 ~~~L~~l~GIG~~tA~~il~~ 108 (341)
...|..|||||+++|..++..
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~ 192 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNY 192 (226)
T ss_dssp ---------------------
T ss_pred cccccccCCCCHHHHHHHHHH
Confidence 356778899999888888765
No 170
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=40.07 E-value=15 Score=28.15 Aligned_cols=18 Identities=11% Similarity=0.329 Sum_probs=15.7
Q ss_pred CccchHHHhcCCCCCHHH
Q psy8564 84 FPKNFISLINLPGIGQST 101 (341)
Q Consensus 84 ~p~~~~~L~~l~GIG~~t 101 (341)
.|.+.++|..|+|||+.-
T Consensus 59 ~P~t~~eL~~I~Gvg~~K 76 (113)
T 2dgz_A 59 RPTTVENVKRIDGVSEGK 76 (113)
T ss_dssp CCCSHHHHHHSSSCCTTG
T ss_pred CCCCHHHHHhCCCCCHHH
Confidence 588999999999999843
No 171
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=39.57 E-value=26 Score=24.27 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=30.4
Q ss_pred HHH-HhCCCHHHHHhCCHHHHHHHHhhcCcH-HHHHHHHHHHHHhHH
Q psy8564 34 RFL-KKFPNIMSLAQAKLENVMELWSGLGYY-SRARNLHICAKLVFF 78 (341)
Q Consensus 34 ~l~-~~~pt~~~la~~~~~~l~~~l~~~G~~-~rA~~i~~~a~~i~~ 78 (341)
.|. +.|-|.++++.++.++|.. --|+. .++.-|+..|+.++.
T Consensus 21 ~L~~~Gf~tve~vA~~~~~eL~~---I~G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 21 VLVEEGFSTLEELAYVPMKELLE---IEGLDEPTVEALRERAKNALA 64 (70)
T ss_dssp HHHHTTCCCHHHHHHSCHHHHTT---STTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcCcHHHHHcCCHHHHhh---ccCCCHHHHHHHHHHHHHHHH
Confidence 444 3578889999888887743 25777 588888888877654
No 172
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=38.96 E-value=18 Score=31.17 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=18.3
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhC
Q psy8564 89 ISLINLPGIGQSTASAIRVFAYG 111 (341)
Q Consensus 89 ~~L~~l~GIG~~tA~~il~~~~~ 111 (341)
..|..|||||+++|..++.. ||
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~-Fg 189 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEH-FG 189 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHH-HC
T ss_pred ccccCCCCcCHHHHHHHHHH-cC
Confidence 46889999999999988874 44
No 173
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=37.96 E-value=37 Score=30.44 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=17.1
Q ss_pred HHHhcCCCCCHHHHHHHHHH
Q psy8564 89 ISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 89 ~~L~~l~GIG~~tA~~il~~ 108 (341)
..|++||||++..|.+|+..
T Consensus 237 ~mL~~IpGVs~~~A~~I~~~ 256 (311)
T 2ziu_A 237 RQLMQISGVSGDKAAAVLEH 256 (311)
T ss_dssp HHHTTBTTCCHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHH
Confidence 56889999999999998853
No 174
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=37.38 E-value=27 Score=34.47 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=14.9
Q ss_pred HHhcCCCCCHHHHHHHH
Q psy8564 90 SLINLPGIGQSTASAIR 106 (341)
Q Consensus 90 ~L~~l~GIG~~tA~~il 106 (341)
.|.++||||+|||.-|+
T Consensus 132 ~L~~~~GiG~Ktaq~I~ 148 (578)
T 2w9m_A 132 ELAGLKGFGAKSAATIL 148 (578)
T ss_dssp TTTTSTTCCHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHH
Confidence 57789999999999883
No 175
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=37.34 E-value=20 Score=30.46 Aligned_cols=12 Identities=25% Similarity=0.163 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHh
Q psy8564 65 RARNLHICAKLV 76 (341)
Q Consensus 65 rA~~i~~~a~~i 76 (341)
-|++|..+++..
T Consensus 126 ta~~l~~l~~~~ 137 (219)
T 2bgw_A 126 TALVIESLARLS 137 (219)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 366666666654
No 176
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=36.04 E-value=1e+02 Score=30.77 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHHHHhC
Q psy8564 66 ARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYG 111 (341)
Q Consensus 66 A~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~~~ 111 (341)
+..+..+++.|.. | ++.+.-.|++|||||+..|-.+-..++.
T Consensus 638 ~~~l~~l~~rl~~---g-v~~e~~~L~qlp~i~~~rar~L~~~g~~ 679 (715)
T 2va8_A 638 ADKLRILNLRVRD---G-IKEELLELVQISGVGRKRARLLYNNGIK 679 (715)
T ss_dssp HHHHHHHHHHHHH---T-CCGGGHHHHTSTTCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHc---C-CChhhcchhhCCCCCHHHHHHHHHcCCC
Confidence 3445555555543 2 4556778999999999999987655553
No 177
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=34.82 E-value=86 Score=22.77 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=19.8
Q ss_pred chHHHhcCCCCCHHHHHHHHHHHhCC
Q psy8564 87 NFISLINLPGIGQSTASAIRVFAYGK 112 (341)
Q Consensus 87 ~~~~L~~l~GIG~~tA~~il~~~~~~ 112 (341)
....+..+||||+..+.-...-+|..
T Consensus 16 geK~V~evpGIG~~~~~~L~~~Gf~k 41 (89)
T 1ci4_A 16 GEKPVGSLAGIGEVLGKKLEERGFDK 41 (89)
T ss_dssp TTCCGGGSTTCCHHHHHHHHHTTCCS
T ss_pred CCCCcccCCCcCHHHHHHHHHcCccH
Confidence 34568899999999988877755554
No 178
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=32.15 E-value=19 Score=32.37 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=14.5
Q ss_pred HhcCCCCCHHHHHHHHHH
Q psy8564 91 LINLPGIGQSTASAIRVF 108 (341)
Q Consensus 91 L~~l~GIG~~tA~~il~~ 108 (341)
+-.+||||+|||.-++.-
T Consensus 205 iPGVpGIG~KTA~kLL~~ 222 (290)
T 1exn_A 205 IRGVEGIGAKRGYNIIRE 222 (290)
T ss_dssp BCCCTTCCHHHHHHHHHH
T ss_pred CCCCCcCCHhHHHHHHHH
Confidence 445999999999887763
No 179
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=31.88 E-value=29 Score=26.54 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=22.8
Q ss_pred cchHHHhcCCCCCHHHHHHHHHHHhC
Q psy8564 86 KNFISLINLPGIGQSTASAIRVFAYG 111 (341)
Q Consensus 86 ~~~~~L~~l~GIG~~tA~~il~~~~~ 111 (341)
.+.++|.+++|||.-+|+-|+..+-.
T Consensus 55 a~~~eL~~i~GIse~ka~kIi~aA~k 80 (114)
T 1b22_A 55 APKKELINIKGISEAKADKILAEAAK 80 (114)
T ss_dssp SBHHHHHTTTTCSTTHHHHHHHHHHH
T ss_pred CCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988743
No 180
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=31.48 E-value=21 Score=32.79 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.5
Q ss_pred HhcCCCCCHHHHHHHHHH
Q psy8564 91 LINLPGIGQSTASAIRVF 108 (341)
Q Consensus 91 L~~l~GIG~~tA~~il~~ 108 (341)
.-.+||||+|||--++.-
T Consensus 234 ~~gipGiG~KtA~kll~~ 251 (341)
T 3q8k_A 234 CESIRGIGPKRAVDLIQK 251 (341)
T ss_dssp SCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHH
Confidence 346899999999888764
No 181
>4ic1_A Uncharacterized protein; CAS4, crispr, MCSG, exonuclease, structural genomics, unknow function; 2.35A {Sulfolobus solfataricus}
Probab=30.40 E-value=13 Score=31.38 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=14.3
Q ss_pred CCCCCCCCcccccccc
Q psy8564 176 KPKCKVCPLQLCCISY 191 (341)
Q Consensus 176 ~P~C~~Cpl~~~C~~~ 191 (341)
++.|..|++++.|++.
T Consensus 189 ~~~C~~Cs~~~~C~~~ 204 (206)
T 4ic1_A 189 NWECKYCIFSVICPAK 204 (206)
T ss_dssp TTSGGGCTTGGGCTTC
T ss_pred CCCCCCCCCCCcCCCc
Confidence 5899999999999864
No 182
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=25.31 E-value=15 Score=32.11 Aligned_cols=49 Identities=24% Similarity=0.271 Sum_probs=0.0
Q ss_pred HhhcCcHHHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHHHH
Q psy8564 57 WSGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 57 l~~~G~~~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~ 109 (341)
+.|+|= .+|+.|.+. -+.. .....-.+.++|.++||||+++|+-|....
T Consensus 20 IpGIGp-k~a~~Ll~~--gf~s-ve~L~~a~~~eL~~v~GIG~ktAe~I~~~l 68 (241)
T 1vq8_Y 20 ISGVGP-SKAESLREA--GFES-VEDVRGADQSALADVSGIGNALAARIKADV 68 (241)
T ss_dssp -----------------------------------------------------
T ss_pred CCCCCH-HHHHHHHHc--CCCC-HHHHHhCCHHHHHhccCCCHHHHHHHHHHH
Confidence 455552 456666654 1110 111123467899999999999999996544
No 183
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=25.13 E-value=46 Score=24.72 Aligned_cols=50 Identities=14% Similarity=0.305 Sum_probs=31.2
Q ss_pred HhhcCcHHHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHHH
Q psy8564 57 WSGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 57 l~~~G~~~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~ 108 (341)
+..++++.||.+..+-|..-.- +.-+..+.++|++++|+|+++.+-|.-.
T Consensus 26 Ie~L~LSvRs~NcLkragI~Tv--~dL~~~se~dLlki~n~G~KSl~EI~~~ 75 (98)
T 1coo_A 26 VDDLELTVRSANCLKAEAIHYI--GDLVQRTEVELLKTPNLGKKSLTEIKDV 75 (98)
T ss_dssp GGGGTCCTTTHHHHHTTTCCBH--HHHHTSCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHcCCCcH--HHHHhCCHHHHHhcCCCCHHHHHHHHHH
Confidence 4556776677665554421100 0011346789999999999998877644
No 184
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=24.53 E-value=1.5e+02 Score=29.10 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=35.7
Q ss_pred HHHHHHhhcCcH-HHHHHHHHHHHHhHHHhCCCCccch----HHHhcCCCCCHHHHHHHHHHH
Q psy8564 52 NVMELWSGLGYY-SRARNLHICAKLVFFKYNGIFPKNF----ISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 52 ~l~~~l~~~G~~-~rA~~i~~~a~~i~~~~~g~~p~~~----~~L~~l~GIG~~tA~~il~~~ 109 (341)
++.++++-.|=. -|++.-.++|..|.. +..++.+.. +.|.+|||||..++..|-.+.
T Consensus 12 ~~a~~~e~~g~~~~r~~aYr~Aa~~l~~-~~~~i~~~~~~~~~~~~~lp~iG~~~~~~i~~~v 73 (575)
T 3b0x_A 12 EIGLMSEFLGDNPFRVRAYHQAARTLYD-LDTPIEEIAEKGKEALMELPGVGPDLAEKILEFL 73 (575)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH-CCSCHHHHHTTCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHh-CCcchhhHhhcchhHHHhCCCCCHHHHHHHHHHH
Confidence 444444445522 377778888888765 222222111 128999999999998887765
No 185
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=24.47 E-value=52 Score=33.84 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=36.1
Q ss_pred CCHHHHHHHHhhcCcHHHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHHHH
Q psy8564 48 AKLENVMELWSGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFA 109 (341)
Q Consensus 48 ~~~~~l~~~l~~~G~~~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~ 109 (341)
|+.++|. .+.|+|- ++|+.|++.-+. +|.+ .++++|.+++|||+++-+-+..|.
T Consensus 505 As~~~L~-~v~GiG~-~~A~~Iv~yR~~-----~G~f-~sr~~L~~V~giG~k~~ekl~~FL 558 (785)
T 3bzc_A 505 ASAALLA-RISGLNS-TLAQNIVAHRDA-----NGAF-RTRDELKKVSRLGEKTFEQAAGFL 558 (785)
T ss_dssp CCHHHHH-TSTTCCH-HHHHHHHHHHHH-----HCCC-SSGGGGGGSTTCCHHHHHHHGGGE
T ss_pred CCHHHHh-hcCCCCH-HHHHHHHHHHHh-----cCCC-CCHHHHHhcCCCCHHHHHHhhheE
Confidence 5666654 3445552 578777765322 2434 478999999999999988876665
No 186
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=24.13 E-value=37 Score=25.87 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=34.8
Q ss_pred HHHHHHHH-hCCCHHHHHhCCHHHHHHHHhhcCcH-HHHHHHHHHHHHhH
Q psy8564 30 PYYQRFLK-KFPNIMSLAQAKLENVMELWSGLGYY-SRARNLHICAKLVF 77 (341)
Q Consensus 30 ~~~~~l~~-~~pt~~~la~~~~~~l~~~l~~~G~~-~rA~~i~~~a~~i~ 77 (341)
....+|.+ .|-|.++|+.++..+|.+. -|+. .||..|++.|+.+.
T Consensus 36 ~~i~kL~eAG~~Tve~va~a~~~eL~~i---~GIse~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 36 NDVKKLEEAGFHTVEAVAYAPKKELINI---KGISEAKADKILAEAAKLV 82 (114)
T ss_dssp HHHHHHHTTCCSSGGGBTSSBHHHHHTT---TTCSTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCcCcHHHHHhCCHHHHHHc---cCCCHHHHHHHHHHHHHHc
Confidence 34456665 4889999999999888543 5766 59999999998875
No 187
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=23.48 E-value=1.1e+02 Score=34.40 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=39.8
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhHHHhCCCCccchHHHhcCCCCCHHHHHHHHHHHhC
Q psy8564 55 ELWSGLGYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYG 111 (341)
Q Consensus 55 ~~l~~~G~~~rA~~i~~~a~~i~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~~~ 111 (341)
+.+...|+.+-|.++.++++.+.. |..+++ -.|++|||||+.+|......++.
T Consensus 1527 d~~~~~g~~~~~~~~~~l~q~l~~---~~w~~~-~~L~qip~i~~~~ar~l~~~gi~ 1579 (1724)
T 4f92_B 1527 DVLSSNGWLSPALAAMELAQMVTQ---AMWSKD-SYLKQLPHFTSEHIKRCTDKGVE 1579 (1724)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHHHT---TCCTTS-CGGGGSTTCCHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHh---CCCcCC-cCEecCCCCCHHHHHHHHHCCCC
Confidence 445567877778888889988875 555544 36999999999999887665544
No 188
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=22.97 E-value=36 Score=30.99 Aligned_cols=18 Identities=17% Similarity=0.074 Sum_probs=14.6
Q ss_pred HhcCCCCCHHHHHHHHHH
Q psy8564 91 LINLPGIGQSTASAIRVF 108 (341)
Q Consensus 91 L~~l~GIG~~tA~~il~~ 108 (341)
+-.+||||+|||--++.-
T Consensus 237 ipGv~GiG~KtA~kLl~~ 254 (336)
T 1rxw_A 237 NEGVKGVGVKKALNYIKT 254 (336)
T ss_dssp BCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHH
Confidence 447999999999887764
No 189
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=22.71 E-value=1.1e+02 Score=26.09 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=14.8
Q ss_pred cchHHHhcCCCCCH-HHHHHHHHH
Q psy8564 86 KNFISLINLPGIGQ-STASAIRVF 108 (341)
Q Consensus 86 ~~~~~L~~l~GIG~-~tA~~il~~ 108 (341)
.+.++|.++ ||+ ++|..|..+
T Consensus 197 As~EeL~~V--IG~~~~A~~I~~~ 218 (220)
T 2nrt_A 197 ASLEEIARV--IGSTEIARRVLDI 218 (220)
T ss_dssp SCHHHHHHH--HTCHHHHHHHHHH
T ss_pred CCHHHHHHH--hChHHHHHHHHHH
Confidence 356777777 888 888777654
No 190
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=22.36 E-value=37 Score=31.44 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.4
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy8564 93 NLPGIGQSTASAIRVFA 109 (341)
Q Consensus 93 ~l~GIG~~tA~~il~~~ 109 (341)
.+||||+|||--++.--
T Consensus 255 GVpGIG~KtA~kLl~~~ 271 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAY 271 (363)
T ss_dssp CSTTCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHc
Confidence 78899999998888643
No 191
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=21.79 E-value=39 Score=30.97 Aligned_cols=18 Identities=28% Similarity=0.191 Sum_probs=14.6
Q ss_pred Hh-cCCCCCHHHHHHHHHH
Q psy8564 91 LI-NLPGIGQSTASAIRVF 108 (341)
Q Consensus 91 L~-~l~GIG~~tA~~il~~ 108 (341)
+- .+||||+|||--++.-
T Consensus 235 ~p~Gv~GIG~KtA~kLi~~ 253 (346)
T 2izo_A 235 NPDGIRGIGPERALKIIKK 253 (346)
T ss_dssp STTCSTTCCHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHH
Confidence 44 7999999999887764
No 192
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=20.97 E-value=99 Score=31.75 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.5
Q ss_pred cchHHHhcCCCCCHHHHHHHHHH
Q psy8564 86 KNFISLINLPGIGQSTASAIRVF 108 (341)
Q Consensus 86 ~~~~~L~~l~GIG~~tA~~il~~ 108 (341)
.+.+.|..+||||+..|..|+.+
T Consensus 505 As~~~L~~v~GiG~~~A~~Iv~y 527 (785)
T 3bzc_A 505 ASAALLARISGLNSTLAQNIVAH 527 (785)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCHHHHhhcCCCCHHHHHHHHHH
Confidence 35788999999999999999887
No 193
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=20.67 E-value=43 Score=30.35 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=14.1
Q ss_pred cCCCCCHHHHHHHHHH
Q psy8564 93 NLPGIGQSTASAIRVF 108 (341)
Q Consensus 93 ~l~GIG~~tA~~il~~ 108 (341)
.+||||+|||--++.-
T Consensus 229 GvpGiG~ktA~kli~~ 244 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS 244 (326)
T ss_dssp TTTTCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHc
Confidence 7999999999888776
No 194
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=20.14 E-value=46 Score=30.94 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.4
Q ss_pred cCCCCCHHHHHHHHHH
Q psy8564 93 NLPGIGQSTASAIRVF 108 (341)
Q Consensus 93 ~l~GIG~~tA~~il~~ 108 (341)
.|||||++||--++.-
T Consensus 236 ~IpGIG~KtA~kLl~~ 251 (379)
T 1ul1_X 236 SIRGIGPKRAVDLIQK 251 (379)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 4899999999887763
No 195
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=20.06 E-value=46 Score=30.62 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=14.0
Q ss_pred hcCCCCCHHHHHHHHHH
Q psy8564 92 INLPGIGQSTASAIRVF 108 (341)
Q Consensus 92 ~~l~GIG~~tA~~il~~ 108 (341)
-.+||||+|||--++.-
T Consensus 228 pgv~GiG~ktA~kli~~ 244 (352)
T 3qe9_Y 228 SSLRGIGLAKACKVLRL 244 (352)
T ss_dssp CCCTTCCHHHHHHHHHH
T ss_pred CCCCCeeHHHHHHHHHH
Confidence 37999999999887754
Done!