RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8564
(341 letters)
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 133 bits (334), Expect = 6e-38
Identities = 96/201 (47%), Positives = 129/201 (64%)
Query: 2 LPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLG 61
LPWQ K Y +WLSE+MLQQTQV TVIPY++RF+ +FP + LA A L+ V+ LW+GLG
Sbjct: 22 LPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLG 81
Query: 62 YYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNV 121
YY+RARNLH A+ V + G FP+ F + LPG+G+STA AI + GK ILDGNV
Sbjct: 82 YYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNV 141
Query: 122 KRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKV 181
KR+L R ++ K +E KLW + + P +E + Q +MD G++IC + KPKC +
Sbjct: 142 KRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSL 201
Query: 182 CPLQLCCISYKTNKINNFLIK 202
CPLQ CI+ N + K
Sbjct: 202 CPLQNGCIAAANNSWALYPGK 222
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 221
Score = 125 bits (314), Expect = 5e-35
Identities = 68/201 (33%), Positives = 114/201 (56%)
Query: 2 LPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLG 61
LPW+ ++ Y +W+SE+MLQQT+V TVIPY+++F+ +FP + +LA A + V++ W GLG
Sbjct: 20 LPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLG 79
Query: 62 YYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNV 121
YYSR RNLH K V +Y G P + L G+G T A+ AYG ++GNV
Sbjct: 80 YYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVNGNV 139
Query: 122 KRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKV 181
R+L R+ + + K+ + +++ +N + + L++ G+++C +P C +
Sbjct: 140 MRVLSRLFLVTDDIAKCSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLL 199
Query: 182 CPLQLCCISYKTNKINNFLIK 202
CP+Q C ++ +K
Sbjct: 200 CPVQAYCQAFAEGVAEELPVK 220
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon
Methanobacterium thermoformicicum [TaxId: 145262]}
Length = 217
Score = 115 bits (287), Expect = 4e-31
Identities = 57/192 (29%), Positives = 101/192 (52%), Gaps = 2/192 (1%)
Query: 2 LPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLG 61
PW++T++ Y I ++EI+L++T V Y +F K+ + + + + +G
Sbjct: 25 FPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIG 84
Query: 62 YYSRARNLHI-CAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGN 120
++ A++V Y G P+N ++++LPG+G+ T +A+ A+GK+ A++D N
Sbjct: 85 LSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDAN 144
Query: 121 VKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCK 180
R++ R G + N+ + K LW A L+P + GLMDF +IIC KPKC+
Sbjct: 145 FVRVINRYFGGSYE-NLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCE 203
Query: 181 VCPLQLCCISYK 192
C + C Y+
Sbjct: 204 KCGMSKLCSYYE 215
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId:
562]}
Length = 214
Score = 104 bits (259), Expect = 4e-27
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 8/194 (4%)
Query: 2 LPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQ-AKLENVMELWSGL 60
L +N + + ++ ++ Q V +R +K+ E ++ S
Sbjct: 25 LVH---RNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIG 81
Query: 61 GYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGN 120
Y ++ARN+ ++ KYNG P++ L+ LPG+G+ TA+ + A+G +D +
Sbjct: 82 LYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTH 141
Query: 121 VKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCK 180
V+R+ R+ ++ +EK L + ++PK+ I ++ FG CK P+C
Sbjct: 142 VERVSKRLGFCRWDDSVLEVEKTLMK----IIPKEEWSITHHRMIFFGRYHCKAQSPQCP 197
Query: 181 VCPLQLCCISYKTN 194
CPL C K
Sbjct: 198 SCPLLHLCREGKKR 211
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII)
{Helicobacter pylori [TaxId: 210]}
Length = 217
Score = 99.8 bits (248), Expect = 2e-25
Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 22/194 (11%)
Query: 3 PWQNTKNTYYIWLSEIMLQQTQVNTV-------IPYYQRFLKKFPNIMSLAQAKLENVME 55
W + L ++ Q T+ V + N+ +A + + E
Sbjct: 22 WWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAE 81
Query: 56 LWSGLGYY-SRARNLHICAKLVFFKYNGI----FPKNFISLINLPGIGQSTASAIRVFAY 110
G+Y +A+ L + + + L++ GIG+ +A AI +A
Sbjct: 82 CVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYAC 141
Query: 111 GKRNAILDGNVKRILIRVLGINCSLNI--KFIEKKLWR--------YAIDLLPKKNIEIY 160
K ++D L ++ + F EK + Y + + +
Sbjct: 142 AKEVMVVDKYSYLFLKKLGIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARF 201
Query: 161 TQGLMDFGSIICKK 174
+++F +
Sbjct: 202 HGKIVEFSKQKLEL 215
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain
of the methyl-GpG binding protein mbd4 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 144
Score = 94.8 bits (235), Expect = 2e-24
Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 8/139 (5%)
Query: 1 MLPWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGL 60
++ + + + ++ I L +T IP FL+K+P+ A +V EL L
Sbjct: 11 LVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPL 70
Query: 61 GYYSRARNLHICAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAI--LD 118
G Y I + K + I L GIG+ + R+F + + D
Sbjct: 71 GLYDLRAKTIIKF------SDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPED 124
Query: 119 GNVKRILIRVLGINCSLNI 137
+ + + + L++
Sbjct: 125 HKLNKYHDWLWENHEKLSL 143
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId:
562]}
Length = 211
Score = 96.6 bits (239), Expect = 3e-24
Identities = 36/195 (18%), Positives = 75/195 (38%), Gaps = 6/195 (3%)
Query: 3 PWQNTKNTYYIWLSEIMLQQTQVNTVIPYYQRFLKKFPNIMSLAQAKLENVMELWSGLGY 62
N + + + ++ ++ Q +V + ++ + +E V +G
Sbjct: 22 TELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGL 81
Query: 63 YSRARNLHI-CAKLVFFKYNGIFPKNFISLINLPGIGQSTASAIRVFAYGKRNAILDGNV 121
Y+ I +++ ++NG P++ +L LPG+G+ TA+ + A+G +D ++
Sbjct: 82 YNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHI 141
Query: 122 KRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICKKIKPKCKV 181
R+ R + EK L P + L+ G C KP+C
Sbjct: 142 FRVCNRTQFAPGKNVEQVEEKLLKVV-----PAEFKVDCHHWLILHGRYTCIARKPRCGS 196
Query: 182 CPLQLCCISYKTNKI 196
C ++ C + I
Sbjct: 197 CIIEDLCEYKEKVDI 211
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 190
Score = 66.0 bits (160), Expect = 2e-13
Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 29/171 (16%)
Query: 11 YYIWLSEIMLQQTQVNTVIPYYQRFLKKF---------------PNIMSLAQAKLENVME 55
S I + + +R + F P++ +LA ++E +
Sbjct: 3 IECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLR 62
Query: 56 LWSGLGYYSRARNLHICAKLVFFKY----------NGIFPKNFISLINLPGIGQSTASAI 105
RAR + A+ + + + + +L LPG+G A I
Sbjct: 63 KLG---LGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQVADCI 119
Query: 106 RVFAYGKRNAI-LDGNVKRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKK 155
+ A K A+ +D ++ I R + + + + +
Sbjct: 120 CLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRS 170
>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 142
Score = 52.3 bits (124), Expect = 4e-09
Identities = 17/138 (12%), Positives = 39/138 (28%), Gaps = 9/138 (6%)
Query: 202 KNKKNIKNCSIIMFIVID----DDYVLFQKRSNKGIWGGLLSFPEWILKDKIINFVDNNL 257
++K + S ++ +L +R N G+ GL FP + L
Sbjct: 4 ASRKPPREESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALL 63
Query: 258 KNLIELEIKKFISSFGFIKNYLILPIISHKLTHLQFKIVPCHIFLKKCFLKENKNNFIWY 317
+ L + + + SH Q + + W
Sbjct: 64 QELQRWAGPLPATHLRHLGEVVHTF--SHIKLTYQVYG--LALEGQTPVTTVP-PGARWL 118
Query: 318 PIKKIKNSPIPAPVRKIL 335
++ + + ++K+
Sbjct: 119 TQEEFHTAAVSTAMKKVF 136
>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 127
Score = 42.4 bits (99), Expect = 8e-06
Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 11/120 (9%)
Query: 216 IVIDDDYVLFQKRSNKGIWGGLLSFPEWILKDKIINFVDNNLKNLIELEIKKFISSFGFI 275
+ D+ VL +KR + G+ L FP + + +LE +
Sbjct: 11 LADDEGRVLIRKRDSTGLLANLWEFP---------SCETDGADGKEKLEQMVGEQYGLQV 61
Query: 276 KNYLILPIISHKLTHLQFKIVPCHIFLKKCFLKENKNNFIWYPIKKIKNSPIPAPVRKIL 335
+ + H +HL +++ L + + P ++K P +++
Sbjct: 62 ELTEPIVSFEHAFSHLVWQLTVFPGRLVH--GGPVEEPYRLAPEDELKAYAFPVSHQRVW 119
>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 152
Score = 41.8 bits (97), Expect = 2e-05
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 13/134 (9%)
Query: 216 IVIDDDYVLFQKRSNKGIWGGLLSFPE-WILKD-KIINFVDNNLKNL--IELEIKKFISS 271
+++++ VL K G++ +P + + I V + I +E F
Sbjct: 7 VLVENGKVLLVKHKRLGVY----IYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYG 62
Query: 272 FGFIKNYLILPIISHKLTHLQFKIVPCHIFLKKCFLKENKNNFI----WYPIKKIKNSPI 327
P+ L + HI +L + + W +++I
Sbjct: 63 IIDENAV-ERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIET 121
Query: 328 PAPVRKILFQIIQR 341
VRK++ +
Sbjct: 122 FPNVRKVVSLALST 135
>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase
(MutT) {Escherichia coli [TaxId: 562]}
Length = 129
Score = 34.5 bits (78), Expect = 0.005
Identities = 13/124 (10%), Positives = 34/124 (27%), Gaps = 15/124 (12%)
Query: 216 IVIDDDYVLFQKRSNKGIWGGLLSFPEWILKDKIINFVDNNLKNLIELEIKKFISSFGFI 275
I +++ + +R+ L FP K ++ + + ++ E+ F
Sbjct: 11 IRNENNEIFITRRAADAHMANKLEFPGG--KIEMGETPEQAVVRELQEEVGITPQHFSLF 68
Query: 276 KNYLILPIISHKLTHLQFKIVPCHIFLKKCFLKENKNN----FIWYPIKKIKNSPIPAPV 331
+ H +L + + E W + + P
Sbjct: 69 EKLEYEFPDRHIT---------LWFWLVERWEGEPWGKEGQPGEWMSLVGLNADDFPPAN 119
Query: 332 RKIL 335
++
Sbjct: 120 EPVI 123
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 61
Score = 30.0 bits (68), Expect = 0.047
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 90 SLINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIE 141
S+ +LPG+G +TA +R Y AI + L V GI+ +K I+
Sbjct: 2 SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIE-LKEVAGISEGTALKIIQ 52
>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein
{Shigella flexneri [TaxId: 623]}
Length = 233
Score = 30.5 bits (68), Expect = 0.20
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 126 IRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDF 167
+R+L + SL + + A LL E D
Sbjct: 35 VRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDL 76
>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115)
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 155
Score = 29.0 bits (64), Expect = 0.44
Identities = 18/135 (13%), Positives = 46/135 (34%), Gaps = 14/135 (10%)
Query: 211 SIIMFIVIDDDYVLFQKRSNKGIWGGLLSFPEWILKDKIINFVDNNLKNLIELEIKKFIS 270
+I + ++ V+ Q R+ + +FP V+N+ + + +
Sbjct: 11 NICLIEDLETQRVVMQYRAPENNRWSGYAFPG--------GHVENDEAFAESVIREIYEE 62
Query: 271 SFGFIKNYLILPIISHKLTHLQFKIVPCHIFLKKCFLKENKNN----FIWYPIKKIKNSP 326
+ I+N ++ I + L IV + F +++ W +I N
Sbjct: 63 TGLTIQNPQLVGIKNWPLDTGGRYIV--ICYKATEFSGTLQSSEEGEVSWVQKDQIPNLN 120
Query: 327 IPAPVRKILFQIIQR 341
+ + ++ +
Sbjct: 121 LAYDMLPLMEMMEAP 135
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 60
Score = 27.0 bits (60), Expect = 0.57
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 91 LINLPGIGQSTASAIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIE 141
L +LPG+G STA + Y I V L + GI+ K I
Sbjct: 1 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGE-LTDIEGISEKAAAKMIM 50
>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus
thermophilus [TaxId: 274]}
Length = 126
Score = 26.5 bits (58), Expect = 3.0
Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 18/130 (13%)
Query: 216 IVIDDDYVLFQKRSNKGIWGGLLSFPEWILKDKIINFVDNNLKNLIELEIKKFISSFGFI 275
+V + + R G W FP+ + ++L E +++ G
Sbjct: 8 VVFNAKREVLLLRDRMGFW----VFPK--------GHPEPG-ESLEEAAVREVWEETGVR 54
Query: 276 KNYLILPIISHKLTHLQFKIVPCHIFLKKCFLKENKNNFI----WYPIKKIKNSPIPAPV 331
L+ P+ + + + H FL + + W+ ++ +
Sbjct: 55 AEVLL-PLYPTRYVNPKGVEREVHWFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPED 113
Query: 332 RKILFQIIQR 341
+L ++R
Sbjct: 114 LGLLEVALER 123
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 26.9 bits (58), Expect = 3.3
Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 85 PKNFISLINLPGIGQSTAS---AIRVFAYGKRNAILDGNVKRILIRVLGINCSLNIKFIE 141
++ G+G+++ S AIR+ GKR ++ + + +V I+ I
Sbjct: 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIA 66
Query: 142 KKLWRYAIDLLPKKNIEIYTQGLMDFGSII 171
A+++ P+ + Y ++D +
Sbjct: 67 SVPGLSALEIDPQAAAQQYRARIVDPIKGV 96
>d1nz8a_ d.58.42.1 (A:) N-utilization substance G protein NusG,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 119
Score = 26.1 bits (57), Expect = 3.7
Identities = 13/100 (13%), Positives = 32/100 (32%), Gaps = 9/100 (9%)
Query: 251 NFVDNNLKNLIELEIKKFISSFGFIKNYLILPIISHKLTHLQF-KIVPCHIFLKKCFLKE 309
NL+ I+ + I ++ + + K+ P ++F++ E
Sbjct: 15 EKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFPGYLFIQMDLGDE 74
Query: 310 NKNNFIWYPIKKI-------KNSPIPAPVR-KILFQIIQR 341
+ N W ++ P P+ + I++
Sbjct: 75 EEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHILEV 114
>d2b5id2 g.18.1.1 (D:103-165) Interleukin-2 receptor alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 24.5 bits (53), Expect = 4.9
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 167 FGSIICKKIKPKCKVCPLQLCCIS 190
+CK K + QL C
Sbjct: 40 PAESVCKMTHGKTRWTQPQLICTG 63
>d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 26.6 bits (58), Expect = 5.0
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 122 KRILIRVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGL--MDF-----GSIICKK 174
+R LI + + A L KK E+ L M+F I K
Sbjct: 3 RRALI----VLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGK 58
Query: 175 IKPKCKVCPLQLCCISYKTNKINNFLIKNKKNIKNCSIIMFI 216
+K ++YK ++ ++ +K ++ +++F
Sbjct: 59 LKDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQ 100
>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184
{Nitrosomonas europaea [TaxId: 915]}
Length = 146
Score = 25.9 bits (56), Expect = 5.3
Identities = 16/127 (12%), Positives = 31/127 (24%), Gaps = 6/127 (4%)
Query: 216 IVIDDDYVLFQKRSNKGIWGGLLSFPE-WILKDKIINFVDNNLKNLIELEIKKFISSFGF 274
++ DD L + +G L+ P + + I + E
Sbjct: 9 VIEQDDKYLLVEEIPRG-TAIKLNQPAGHLEPGESI---IQACSREVLEETGHSFLPEVL 64
Query: 275 IKNYLILPIISHKLTHLQFKIVPCHIFLKKCFLKENKNNFIWYPIKKIKNSPIPAPVRKI 334
Y + F L W+ I +I+ +
Sbjct: 65 TGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLV 124
Query: 335 LFQIIQR 341
+ Q I+
Sbjct: 125 M-QCIED 130
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase
Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 156
Score = 25.4 bits (55), Expect = 8.5
Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 216 IVIDDDYVLFQKRSNKGIWGGLLSFP 241
+V+ VL + G G +
Sbjct: 11 LVLQPQRVLLGMKKR-GFGAGRWNGF 35
>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione
reductase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 25.6 bits (55), Expect = 9.3
Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 127 RVLGINCSLNIKFIEKKLWRYAIDLLPKKNIEIYTQGLMDFGSIICK-------KIKPKC 179
+VL + K L A+D L ++ + L +
Sbjct: 4 KVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPE 63
Query: 180 KVCPLQLCCISYKTNKINNFLIKNKKNIKNCSIIMFI 216
+YK + + + +K ++ +++F
Sbjct: 64 VFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQ 100
>d2fhta1 d.9.1.1 (A:4-71) Macrophage inflammatory protein, MIP
{Kaposi's sarcoma-associated herpesvirus, VMIP-II
[TaxId: 37296]}
Length = 68
Score = 23.9 bits (52), Expect = 9.4
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 187 CCISYKTNKINNFLIKN-KKNIKNCSIIMFIVI 218
CC+ Y+ + L+ + + CS I +
Sbjct: 8 CCLGYQKRPLPQVLLSSWYPTSQLCSKPGVIFL 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.144 0.449
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,376,957
Number of extensions: 69734
Number of successful extensions: 355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 45
Length of query: 341
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,226,816
Effective search space: 312838080
Effective search space used: 312838080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.9 bits)