RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8569
(85 letters)
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 58.1 bits (140), Expect = 2e-12
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRK 71
E N ++ GL +EVW+KG+IWD +G ++PL + SNE G +
Sbjct: 64 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGE 107
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding,
neurotransmitter release, RIM, MUNC13 domains,
exocytosis, metal-binding; 1.44A {Rattus norvegicus}
SCOP: b.7.1.1
Length = 131
Score = 51.9 bits (124), Expect = 2e-10
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGS 69
E N ++ GL +EVW+KG+IWD +G ++PL + SNE G
Sbjct: 55 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGP 96
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas
palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Length = 458
Score = 28.8 bits (65), Expect = 0.17
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 9 GSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIG-YHYLPL 58
GS+ R S F + E P E V+ L++ G++ A G Y +LPL
Sbjct: 18 GSHMRLSRFFLPILKENPKEAEIVSHRLMLRA---GMLRQEAAGIYAWLPL 65
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 27.0 bits (60), Expect = 0.67
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 11/50 (22%)
Query: 22 RFEVPSETNDVNQGLLIEVWDKGIIWDRA-----IGYHYLPLPQVAFSNE 66
RF++ D ++ L +E+WD WD +G + ++ +
Sbjct: 88 RFQLKES--DKDRRLSVEIWD----WDLTSRNDFMGSLSFGISELQKAGV 131
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 26.5 bits (59), Expect = 0.68
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 22 RFEVPSETNDVNQGLLIEVWDKGIIWDRA-----IGYHYLPLPQV 61
F++ D ++ L +E+WD WDR +G + ++
Sbjct: 73 TFKLKPS--DKDRRLSVEIWD----WDRTTRNDFMGSLSFGVSEL 111
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular
dystrophy, cardiomyopathy, membrane fusion, dystrophin,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 26.6 bits (59), Expect = 0.68
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 4/27 (14%)
Query: 23 FEVPSETNDVNQGLLIEVWDKGIIWDR 49
F++ D + L I V D ++
Sbjct: 59 FDLRGIPLDFSSSLGIIVKD----FET 81
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 26.8 bits (58), Expect = 0.87
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 22 RFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQV 61
F + +V L I + D + D +G + +
Sbjct: 76 EFILDPNQENV---LEITLMDANYVMDETLGTATFTVSSM 112
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 26.8 bits (58), Expect = 0.92
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 22 RFEVPSETNDVNQGLLIEVWDKGIIWD 48
+ + + L ++VWD WD
Sbjct: 443 KMDFENVLLSTGGPLRVQVWDADYGWD 469
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 26.2 bits (58), Expect = 1.0
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 22 RFEVPSETNDVNQGLLIEVWDKGIIWDRA-----IGYHYLPLPQVAFSNEV 67
++ S + + L + VWD +DR +G + L + +
Sbjct: 84 IYKSISMEQLMKKTLEVTVWD----YDRFSSNDFLGEVLIDLSSTSHLDNT 130
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 26.1 bits (58), Expect = 1.0
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 9/51 (17%)
Query: 22 RFEVPSETNDVNQGLLIEVWDKGIIWDR-----AIGYHYLPLPQVAFSNEV 67
+ S+ + L + V + +G LPL S E
Sbjct: 76 VYSGYSKETLRQRELQLSVLS----AESLRENFFLGGITLPLKDFNLSKET 122
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 26.2 bits (58), Expect = 1.1
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 23 FEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQV 61
F + +V L I + D + D +G + +
Sbjct: 62 FILDPNQENV---LEITLMDANYVMDETLGTATFTVSSM 97
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 26.1 bits (58), Expect = 1.3
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 22 RFEVPSETNDVNQGLLIEVWDKGIIWDR-----AIGYHYLPLPQVAFSNEVG 68
FE V + L ++V D +DR IG +PL +V +
Sbjct: 81 LFEGFPYEKVVQRILYLQVLD----YDRFSRNDPIGEVSIPLNKVDLTQMQT 128
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 25.4 bits (56), Expect = 1.8
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 12/51 (23%)
Query: 22 RFEVPSETNDVNQGLLIEVWDKGIIWDRA------IGYHYLPLPQVAFSNE 66
F V E D + LL+ VW+ IG + + ++
Sbjct: 83 FFPVQEE--DDQKRLLVTVWN----RASQSRQSGLIGCMSFGVKSLLTPDK 127
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase,
editing, translation; HET: P5A; 2.3A {Enterococcus
faecalis} PDB: 2j3m_A*
Length = 572
Score = 25.6 bits (57), Expect = 2.0
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 13 RWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIG-YHYLPL 58
+ S + T EVP++ ++ +L+ G I A G Y YLPL
Sbjct: 2 KQSKMLIPTLREVPNDAEVLSHQILLRA---GYIRQVAAGIYSYLPL 45
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex,
transcription/DNA complex; 2.70A {Homo sapiens} SCOP:
g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Length = 110
Score = 25.2 bits (55), Expect = 2.1
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 48 DRAIGYHY 55
DRA G+H+
Sbjct: 14 DRATGFHF 21
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 25.0 bits (55), Expect = 2.7
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 9/50 (18%)
Query: 22 RFEVPSETNDVNQGLLIEVWDKGIIWDR-----AIGYHYLPLPQVAFSNE 66
F T L + +DR IG +PL + S
Sbjct: 78 TFYGIPYTQIQELALHFTILS----FDRFSRDDIIGEVLIPLSGIELSEG 123
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 24.0 bits (52), Expect = 6.6
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 13/53 (24%)
Query: 23 FEVPSETNDVNQGLLIEVWDKGIIWDRA-----IGYHYLPLPQVAFSNEVGSR 70
F V LL EV+D +R +G +PL + N R
Sbjct: 79 FRVH----PQQHRLLFEVFD----ENRLTRDDFLGQVDVPLYPLPTENPRLER 123
>1yqs_A D-alanyl-D-alanine carboxypeptidase; cell well biosynthesis,
beta-lactam, beta-sultam, sulfonylation, hydrolase;
HET: BSA; 1.05A {Streptomyces SP} SCOP: e.3.1.1 PDB:
1cef_A* 1ceg_A* 1ikg_A* 1iki_A* 1hvb_A* 1pw1_A* 1pw8_A*
1mpl_A* 1pwd_A* 1pwc_A* 1scw_A* 1pwg_A* 3pte_A 1sde_A*
Length = 349
Score = 24.2 bits (53), Expect = 6.7
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 35 GLLIEVWDKGIIWDRAIGY 53
G ++ V D G I + G
Sbjct: 25 GAMVRVDDNGTIHQLSEGV 43
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 23.8 bits (52), Expect = 8.4
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 11/44 (25%)
Query: 23 FEVPSETNDVNQGLLIEVWDKGIIWDRA-----IGYHYLPLPQV 61
F P + D++ L + V+D D +G +PL +
Sbjct: 64 FTFPIK--DIHDVLEVTVFD----EDGDKPPDFLGKVAIPLLSI 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.424
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,272,289
Number of extensions: 60342
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 22
Length of query: 85
Length of database: 6,701,793
Length adjustment: 53
Effective length of query: 32
Effective length of database: 5,221,980
Effective search space: 167103360
Effective search space used: 167103360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)