RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8569
         (85 letters)



>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 128

 Score = 31.3 bits (70), Expect = 0.006
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 24 EVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRK 71
          +   E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G  +
Sbjct: 48 DFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGE 95


>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score = 25.8 bits (56), Expect = 0.52
 Identities = 5/38 (13%), Positives = 12/38 (31%)

Query: 30  NDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEV 67
            +    L I + D   + D  +G     +  +    + 
Sbjct: 66  PNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKK 103


>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
          [TaxId: 44689]}
          Length = 306

 Score = 24.8 bits (53), Expect = 1.5
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 37 LIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKGL----FSPIRAG 85
          LI V +K       +G   L LPQ+       S K++ ++ +    F P  +G
Sbjct: 3  LIPVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSG 55


>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
           protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 125

 Score = 24.7 bits (53), Expect = 1.6
 Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 3/50 (6%)

Query: 22  RFEVPSETNDVNQGLLIEVWDKGIIWDRA---IGYHYLPLPQVAFSNEVG 68
            +          + L I +WD+  + +     +G   + L      +E  
Sbjct: 71  IYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 120


>d2p8ia1 d.58.55.1 (A:1-115) Putative dioxygenase BxeB0224
          {Burkholderia xenovorans [TaxId: 36873]}
          Length = 115

 Score = 23.9 bits (52), Expect = 2.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 44 GIIWDRAIGYHYLPLPQVAFSNEV 67
          G   +R +G H +   Q+AF+ E 
Sbjct: 44 GRFHERPVGPHPMWSYQLAFTQEQ 67


>d1yqsa1 e.3.1.1 (A:3-347) D-ala carboxypeptidase/transpeptidase
          {Streptomyces sp., R61 [TaxId: 1931]}
          Length = 345

 Score = 24.0 bits (50), Expect = 3.1
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 35 GLLIEVWDKGIIWDRAIGYH 54
          G ++ V D G I   + G  
Sbjct: 23 GAMVRVDDNGTIHQLSEGVA 42


>d1wsca1 d.309.1.1 (A:3-227) Hypothetical protein ST0229 {Sulfolobus
           tokodaii [TaxId: 111955]}
          Length = 225

 Score = 22.5 bits (48), Expect = 8.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 17  FSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVA 62
            +V T+ +     N       I+V + G+I +  I Y  L LPQV 
Sbjct: 115 VTVLTKPQEIDVENRWELPKKIKVGEDGLIVEYGILYSGLLLPQVP 160


>d1lhpa_ c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries)
          [TaxId: 9940]}
          Length = 309

 Score = 22.8 bits (48), Expect = 8.1
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 49 RAIGYHYLPLPQVAFSNEVGSRKTAG 74
          + +G+    +  V FSN  G     G
Sbjct: 26 QVLGFEVDAVNSVQFSNHTGYSHWKG 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0673    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 312,742
Number of extensions: 11928
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 9
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)