BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8570
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
Length = 441
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 63/100 (63%), Gaps = 6/100 (6%)
Query: 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
D LGPVC+Y APVAR + W +P+L+AG L A F+ K EY LTR+ +++ +G+ +
Sbjct: 86 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMM 145
Query: 75 QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKI 114
++ ++ +W+ A ++++ K NC+FT+ V+++
Sbjct: 146 LALFRHHHWSRAALVYSD-----DKLERNCYFTLEGVHEV 180
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 77.0 bits (188), Expect = 4e-15, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Query: 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
D LGPVC+Y APVAR + W +P+L+AG L A F+ K EY LTR+ +++ +G+ +
Sbjct: 128 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMM 187
Query: 75 QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDE 131
++ ++ +W+ A ++++ K NC+FT+ V+++ + SFDE
Sbjct: 188 LALFRHHHWSRAALVYSD-----DKLERNCYFTLEGVHEVFQEEGLHT--SIYSFDE 237
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 77.0 bits (188), Expect = 4e-15, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Query: 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
D LGPVC+Y APVAR + W +P+L+AG L A F+ K EY LTR+ +++ +G+ +
Sbjct: 129 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMM 188
Query: 75 QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDE 131
++ ++ +W+ A ++++ K NC+FT+ V+++ + SFDE
Sbjct: 189 LALFRHHHWSRAALVYSD-----DKLERNCYFTLEGVHEVFQEEGLHT--SIYSFDE 238
>pdb|1DP4|A Chain A, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
pdb|1DP4|C Chain C, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
pdb|1T34|A Chain A, Rotation Mechanism For Transmembrane Signaling By The
Atrial Natriuretic Peptide Receptor
pdb|1T34|B Chain B, Rotation Mechanism For Transmembrane Signaling By The
Atrial Natriuretic Peptide Receptor
pdb|3A3K|A Chain A, Reversibly Bound Chloride In The Atrial Natriuretic
Peptide Receptor Hormone-Binding Domain
pdb|3A3K|B Chain B, Reversibly Bound Chloride In The Atrial Natriuretic
Peptide Receptor Hormone-Binding Domain
Length = 435
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Query: 18 FLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSI 77
FLGP C Y APV R++ W +P+LTAG +K EY TR S +G V ++
Sbjct: 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTAL 140
Query: 78 LKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETV--T 135
+ W + Y G + C+F + +Y + + + +E V
Sbjct: 141 HRRLGWEHQALVL--YADRLGD-DRPCFFIVEGLYMRV-----RERLNITVNHQEFVEGD 192
Query: 136 PEKLKEQLIAITKRARII 153
P+ + L A+ ++ R+I
Sbjct: 193 PDHYPKLLRAVRRKGRVI 210
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 32/163 (19%)
Query: 10 GFVVCVDA-------------FLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFE 56
G V CVD +GP V V ++ IP + + K
Sbjct: 112 GLVRCVDGSSSSFRSKKPIVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSMDLSDKTL 171
Query: 57 YPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN--NYGQTTGKG----NSNCWFTIAS 110
+ R++ S + +A+ I+K +NWT + NYG++ + ++ +IA
Sbjct: 172 FKYFMRVVPSDAQQARAMVDIVKRYNWTYVSAVHTEGNYGESGMEAFKDMSAKEGISIAH 231
Query: 111 VYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARII 153
YKI ++ +SFD KL ++L + +AR++
Sbjct: 232 SYKIYSNAGE------QSFD-------KLLKKLTSHLPKARVV 261
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 19 LGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSIL 78
G VC V + +A W + L+ K +YP R + S + V A+ +L
Sbjct: 90 FGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLL 149
Query: 79 KNFNWTVAG 87
K++ W G
Sbjct: 150 KHYQWKRVG 158
>pdb|3HID|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Yersinia Pestis Co92
Length = 432
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 91 NNYGQTTGKGNSNCWFTIASVYKI--ITSPSGSNDMKLESFD 130
N YG TTG+ W I +V + I S SG KL+ D
Sbjct: 296 NEYGATTGRSRRTGWLDIVAVRRAVQINSLSGFCMTKLDVLD 337
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 27.3 bits (59), Expect = 4.3, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 70 VGQAVQSILKNFNWTVAGFMF--------NNYG-QTTGKGNSNCWFTIASVYKIITSPSG 120
V + + SILK F ++ GF+F +Y Q+ G + ++ +++++
Sbjct: 680 VARVLDSILKKFQVSIEGFIFLLSLITSQQDYELQSKFAGCDKLFLSLLEDWRLVSFLLE 739
Query: 121 SNDMKLESFDEETV 134
++ + LE F+EE V
Sbjct: 740 NSALLLEKFEEEDV 753
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 26.9 bits (58), Expect = 4.7, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 70 VGQAVQSILKNFNWTVAGFMF--------NNYG-QTTGKGNSNCWFTIASVYKIITSPSG 120
V + + SILK F ++ GF+F +Y Q+ G + ++ +++++
Sbjct: 678 VARVLDSILKKFQVSIEGFIFLLSLITSQQDYELQSKFAGCDKLFLSLLEDWRLVSFLLE 737
Query: 121 SNDMKLESFDEETV 134
++ + LE F+EE V
Sbjct: 738 NSALLLEKFEEEDV 751
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 26.9 bits (58), Expect = 4.7, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 70 VGQAVQSILKNFNWTVAGFMF--------NNYG-QTTGKGNSNCWFTIASVYKIITSPSG 120
V + + SILK F ++ GF+F +Y Q+ G + ++ +++++
Sbjct: 680 VARVLDSILKKFQVSIEGFIFLLSLITSQQDYELQSKFAGCDKLFLSLLEDWRLVSFLLE 739
Query: 121 SNDMKLESFDEETV 134
++ + LE F+EE V
Sbjct: 740 NSALLLEKFEEEDV 753
>pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVS|B Chain B, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVU|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVU|B Chain B, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVX|A Chain A, Human Kynurenine Aminotransferase I In Complex With Tris
pdb|3FVX|B Chain B, Human Kynurenine Aminotransferase I In Complex With Tris
Length = 422
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 55 FEYPTLTRMMGSF--SLVGQAVQSILKNFNWTVAGF--MFNNYGQTTGKGNS 102
F YP LT+++ SF L+GQ + L+N TV G+ +F + +G+
Sbjct: 67 FGYPPLTKILASFFGELLGQEIDP-LRNVLVTVGGYGALFTAFQALVDEGDE 117
>pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
pdb|1W7M|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With L-Phe
Length = 422
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 55 FEYPTLTRMMGSF--SLVGQAVQSILKNFNWTVAGF--MFNNYGQTTGKGNS 102
F YP LT+++ SF L+GQ + L+N TV G+ +F + +G+
Sbjct: 67 FGYPPLTKILASFFGELLGQEIDP-LRNVLVTVGGYGALFTAFQALVDEGDE 117
>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Pmp Form
Length = 422
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 55 FEYPTLTRMMGSF--SLVGQAVQSILKNFNWTVAGF--MFNNYGQTTGKGNS 102
F YP LT+++ SF L+GQ + L+N TV G+ +F + +G+
Sbjct: 67 FGYPPLTKILASFFGELLGQEIDP-LRNVLVTVGGYGALFTAFQALVDEGDE 117
>pdb|4DGV|H Chain H, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Hcv1, P2(1) Form
pdb|4DGY|H Chain H, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Hcv1, C2 Form
Length = 226
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 5/22 (22%)
Query: 84 TVAGFMFNNYG-----QTTGKG 100
T +GF FNNYG QT GKG
Sbjct: 23 TASGFTFNNYGMHWVRQTPGKG 44
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 68 SLVGQAVQSILKNFNWTVAGFMFNNYGQTTGK 99
L+G+A++ K+ W ++G F Y + K
Sbjct: 346 ELIGEAIRKRXKDEEWILSGSWFKEYDKVDAK 377
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,693,488
Number of Sequences: 62578
Number of extensions: 186178
Number of successful extensions: 396
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 18
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)