Query psy8570
Match_columns 159
No_of_seqs 148 out of 1353
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 22:13:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06386 PBP1_NPR_C_like Ligand 99.9 3.3E-24 7.2E-29 173.6 13.2 137 12-157 65-202 (387)
2 cd06365 PBP1_Pheromone_recepto 99.9 7.6E-24 1.7E-28 175.4 14.0 137 12-157 101-239 (469)
3 cd06375 PBP1_mGluR_groupII Lig 99.9 1.3E-22 2.9E-27 167.6 14.7 136 11-156 102-239 (458)
4 cd06385 PBP1_NPR_A Ligand-bind 99.9 2.2E-22 4.7E-27 163.5 14.2 139 11-157 71-210 (405)
5 cd06361 PBP1_GPC6A_like Ligand 99.9 6.6E-22 1.4E-26 161.1 14.8 136 12-156 101-241 (403)
6 cd06374 PBP1_mGluR_groupI Liga 99.9 7.3E-22 1.6E-26 163.6 14.4 136 11-156 114-252 (472)
7 cd06376 PBP1_mGluR_groupIII Li 99.9 2.4E-21 5.2E-26 160.1 14.4 137 11-156 100-238 (463)
8 cd06371 PBP1_sensory_GC_DEF_li 99.9 3.2E-21 7E-26 156.0 14.7 131 12-157 64-196 (382)
9 PF01094 ANF_receptor: Recepto 99.9 8.4E-22 1.8E-26 155.3 11.0 139 10-157 47-187 (348)
10 cd06364 PBP1_CaSR Ligand-bindi 99.9 4.1E-21 8.8E-26 160.7 15.0 136 11-156 115-251 (510)
11 cd06362 PBP1_mGluR Ligand bind 99.9 4.8E-21 1E-25 157.6 14.1 136 11-156 100-237 (452)
12 cd06384 PBP1_NPR_B Ligand-bind 99.9 6.8E-21 1.5E-25 154.6 13.2 138 12-157 71-210 (399)
13 cd06369 PBP1_GC_C_enterotoxin_ 99.8 5.9E-21 1.3E-25 151.8 8.4 133 12-158 79-217 (380)
14 cd06367 PBP1_iGluR_NMDA N-term 99.8 6.1E-20 1.3E-24 147.0 13.5 135 11-156 60-201 (362)
15 cd06373 PBP1_NPR_like Ligand b 99.8 7.9E-20 1.7E-24 148.0 14.1 137 12-156 71-208 (396)
16 cd06372 PBP1_GC_G_like Ligand- 99.8 1.6E-19 3.6E-24 146.0 14.8 139 12-157 66-204 (391)
17 KOG1056|consensus 99.8 4.9E-20 1.1E-24 158.5 12.3 137 10-156 121-259 (878)
18 cd06370 PBP1_Speract_GC_like L 99.8 2.5E-19 5.4E-24 145.7 13.8 136 11-157 66-205 (404)
19 cd06269 PBP1_glutamate_recepto 99.8 5.5E-19 1.2E-23 135.7 14.6 135 12-158 69-204 (298)
20 cd06383 PBP1_iGluR_AMPA_Like N 99.8 4.4E-19 9.6E-24 143.1 14.6 129 9-157 60-193 (368)
21 cd06363 PBP1_Taste_receptor Li 99.8 5.2E-19 1.1E-23 144.1 14.5 137 11-156 104-241 (410)
22 cd06350 PBP1_GPCR_family_C_lik 99.8 8.6E-19 1.9E-23 139.1 14.9 135 13-157 90-225 (348)
23 cd06379 PBP1_iGluR_NMDA_NR1 N- 99.8 4.3E-18 9.2E-23 137.2 14.4 134 11-156 77-220 (377)
24 cd06351 PBP1_iGluR_N_LIVBP_lik 99.8 1.1E-17 2.4E-22 131.1 15.0 133 12-158 61-195 (328)
25 cd06366 PBP1_GABAb_receptor Li 99.8 1.1E-17 2.4E-22 133.2 14.5 134 13-156 65-199 (350)
26 cd06352 PBP1_NPR_GC_like Ligan 99.8 1.3E-17 2.8E-22 134.5 14.7 137 12-157 66-202 (389)
27 cd06390 PBP1_iGluR_AMPA_GluR1 99.8 1.3E-17 2.8E-22 134.4 13.3 126 9-155 51-177 (364)
28 cd06393 PBP1_iGluR_Kainate_Glu 99.8 2.5E-17 5.3E-22 133.3 15.0 129 10-154 68-197 (384)
29 cd06394 PBP1_iGluR_Kainate_KA1 99.8 2.5E-17 5.4E-22 131.3 13.5 130 10-155 61-192 (333)
30 cd06387 PBP1_iGluR_AMPA_GluR3 99.7 3.6E-17 7.7E-22 132.2 13.5 128 9-156 58-187 (372)
31 cd06378 PBP1_iGluR_NMDA_NR2 N- 99.7 5.3E-17 1.1E-21 130.8 13.8 138 9-155 56-199 (362)
32 cd06392 PBP1_iGluR_delta_1 N-t 99.7 8.3E-17 1.8E-21 131.0 12.9 107 9-130 57-174 (400)
33 cd06380 PBP1_iGluR_AMPA N-term 99.7 2E-16 4.4E-21 127.5 14.2 132 9-155 57-189 (382)
34 cd06391 PBP1_iGluR_delta_2 N-t 99.7 6.6E-16 1.4E-20 125.9 13.0 103 9-124 57-169 (400)
35 cd06377 PBP1_iGluR_NMDA_NR3 N- 99.7 2.5E-15 5.3E-20 121.3 15.4 136 11-158 78-219 (382)
36 cd06388 PBP1_iGluR_AMPA_GluR4 99.7 1.5E-15 3.2E-20 122.7 13.0 120 9-149 58-177 (371)
37 cd06382 PBP1_iGluR_Kainate N-t 99.7 2.2E-15 4.8E-20 118.9 13.6 125 11-155 60-187 (327)
38 cd06389 PBP1_iGluR_AMPA_GluR2 99.7 1.9E-15 4E-20 122.0 13.1 127 9-154 52-181 (370)
39 cd06368 PBP1_iGluR_non_NMDA_li 99.6 2.1E-14 4.6E-19 113.0 14.2 127 11-155 59-186 (324)
40 cd06346 PBP1_ABC_ligand_bindin 99.6 4.5E-14 9.7E-19 111.0 12.6 132 13-156 66-199 (312)
41 cd06338 PBP1_ABC_ligand_bindin 99.5 9.2E-14 2E-18 110.2 12.1 131 13-156 70-203 (345)
42 cd06342 PBP1_ABC_LIVBP_like Ty 99.5 9.2E-14 2E-18 109.5 11.3 132 11-155 63-196 (334)
43 cd04509 PBP1_ABC_transporter_G 99.5 1.8E-13 3.9E-18 104.8 12.1 134 11-156 63-198 (299)
44 cd06345 PBP1_ABC_ligand_bindin 99.5 3.2E-13 6.8E-18 107.4 12.7 131 13-155 66-205 (344)
45 cd06381 PBP1_iGluR_delta_like 99.5 5.7E-13 1.2E-17 107.5 13.6 98 10-119 58-165 (363)
46 cd06340 PBP1_ABC_ligand_bindin 99.5 5E-13 1.1E-17 106.6 10.0 134 10-156 65-206 (347)
47 cd06347 PBP1_ABC_ligand_bindin 99.4 2.5E-12 5.4E-17 101.2 13.1 133 10-156 62-198 (334)
48 KOG1055|consensus 99.4 1.4E-13 3E-18 116.9 3.4 128 14-157 113-241 (865)
49 cd06343 PBP1_ABC_ligand_bindin 99.3 3.3E-11 7.1E-16 96.3 12.6 132 12-155 72-205 (362)
50 cd06330 PBP1_Arsenic_SBP_like 99.3 3E-11 6.5E-16 95.9 11.8 133 13-156 66-202 (346)
51 cd06335 PBP1_ABC_ligand_bindin 99.3 8.1E-11 1.8E-15 93.9 14.1 131 13-155 66-199 (347)
52 cd06329 PBP1_SBP_like_3 Peripl 99.3 4.1E-11 8.8E-16 95.3 10.2 133 11-155 63-207 (342)
53 cd06336 PBP1_ABC_ligand_bindin 99.3 8.3E-11 1.8E-15 93.8 11.6 130 13-156 70-200 (347)
54 cd06348 PBP1_ABC_ligand_bindin 99.3 1.8E-10 4E-15 91.4 13.5 130 13-155 66-198 (344)
55 cd06327 PBP1_SBP_like_1 Peripl 99.2 1.2E-10 2.5E-15 92.3 12.0 133 13-157 65-198 (334)
56 cd06344 PBP1_ABC_ligand_bindin 99.2 1.6E-10 3.5E-15 91.5 12.4 130 13-155 65-197 (332)
57 cd06268 PBP1_ABC_transporter_L 99.2 1.6E-10 3.5E-15 88.4 11.6 134 10-156 62-197 (298)
58 cd06360 PBP1_alkylbenzenes_lik 99.2 5.5E-10 1.2E-14 88.1 13.0 131 12-154 63-194 (336)
59 cd06349 PBP1_ABC_ligand_bindin 99.2 8.4E-10 1.8E-14 87.5 13.6 131 12-156 65-197 (340)
60 PRK15404 leucine ABC transport 99.1 7.9E-10 1.7E-14 89.2 11.9 132 11-155 89-222 (369)
61 cd06359 PBP1_Nba_like Type I p 99.1 1.7E-09 3.6E-14 85.7 13.0 129 13-156 64-193 (333)
62 cd06332 PBP1_aromatic_compound 99.1 3E-09 6.4E-14 83.7 13.0 129 13-156 64-193 (333)
63 KOG4440|consensus 99.1 2.8E-10 6.1E-15 95.1 6.7 136 9-156 90-231 (993)
64 KOG1054|consensus 99.1 1.2E-09 2.5E-14 91.1 9.6 132 7-158 83-216 (897)
65 cd06328 PBP1_SBP_like_2 Peripl 99.0 1.1E-08 2.5E-13 81.1 13.0 128 13-153 67-195 (333)
66 cd06326 PBP1_STKc_like Type I 99.0 1.8E-08 4E-13 79.4 13.6 131 13-156 67-198 (336)
67 cd06333 PBP1_ABC-type_HAAT_lik 99.0 2.7E-08 5.8E-13 77.9 13.6 130 13-156 65-195 (312)
68 cd06339 PBP1_YraM_LppC_lipopro 98.9 3.1E-08 6.7E-13 78.9 13.2 121 12-148 57-177 (336)
69 cd01391 Periplasmic_Binding_Pr 98.9 4.8E-08 1E-12 72.9 12.5 134 11-157 55-190 (269)
70 cd06331 PBP1_AmiC_like Type I 98.9 3.9E-08 8.5E-13 77.8 12.2 127 13-155 66-193 (333)
71 cd06358 PBP1_NHase Type I peri 98.9 6.1E-08 1.3E-12 76.8 13.0 126 13-155 66-193 (333)
72 cd06334 PBP1_ABC_ligand_bindin 98.8 4E-08 8.8E-13 78.8 11.0 131 13-156 66-202 (351)
73 TIGR03863 PQQ_ABC_bind ABC tra 98.8 2.5E-08 5.4E-13 80.1 9.3 111 11-130 56-166 (347)
74 COG0683 LivK ABC-type branched 98.8 8.7E-08 1.9E-12 77.3 12.3 132 12-155 76-209 (366)
75 PF13458 Peripla_BP_6: Peripla 98.7 1E-07 2.3E-12 75.2 10.0 128 13-156 68-197 (343)
76 cd06355 PBP1_FmdD_like Peripla 98.7 3.9E-07 8.5E-12 72.8 12.7 129 12-156 65-195 (348)
77 cd06337 PBP1_ABC_ligand_bindin 98.6 4E-07 8.6E-12 73.0 11.0 135 13-156 68-210 (357)
78 cd06356 PBP1_Amide_Urea_BP_lik 98.6 1.7E-06 3.6E-11 68.7 12.4 127 12-155 65-193 (334)
79 TIGR03407 urea_ABC_UrtA urea A 98.5 5.1E-06 1.1E-10 66.7 12.8 128 12-155 66-195 (359)
80 TIGR03669 urea_ABC_arch urea A 98.4 8.3E-06 1.8E-10 66.1 12.2 127 12-155 66-194 (374)
81 cd06341 PBP1_ABC_ligand_bindin 98.3 1.8E-05 3.9E-10 62.7 11.6 131 11-156 63-195 (341)
82 cd06357 PBP1_AmiC Periplasmic 97.9 0.0007 1.5E-08 54.4 13.7 129 12-155 65-195 (360)
83 KOG1053|consensus 97.5 0.0026 5.6E-08 56.3 12.6 81 13-93 99-183 (1258)
84 cd01537 PBP1_Repressors_Sugar_ 95.7 0.3 6.5E-06 36.2 11.3 96 11-118 52-147 (264)
85 cd06267 PBP1_LacI_sugar_bindin 94.8 1 2.2E-05 33.4 11.7 93 12-118 53-145 (264)
86 cd06300 PBP1_ABC_sugar_binding 92.1 2.9 6.2E-05 31.6 10.1 96 11-119 57-155 (272)
87 cd01536 PBP1_ABC_sugar_binding 91.5 4.5 9.8E-05 30.0 13.0 96 11-118 52-150 (267)
88 cd06320 PBP1_allose_binding Pe 90.7 5.8 0.00013 29.9 11.8 94 12-118 55-151 (275)
89 cd06282 PBP1_GntR_like_2 Ligan 90.0 4 8.7E-05 30.4 9.1 95 12-119 53-147 (266)
90 PF13433 Peripla_BP_5: Peripla 88.4 9 0.00019 31.3 10.3 126 12-154 66-194 (363)
91 PF04348 LppC: LppC putative l 88.2 2.1 4.5E-05 36.8 6.9 118 11-145 275-394 (536)
92 cd01545 PBP1_SalR Ligand-bindi 87.7 9.8 0.00021 28.4 11.3 95 12-119 54-148 (270)
93 TIGR00315 cdhB CO dehydrogenas 86.6 7.9 0.00017 27.9 8.2 35 13-47 28-64 (162)
94 cd06325 PBP1_ABC_uncharacteriz 86.3 12 0.00026 28.1 11.4 128 12-155 58-190 (281)
95 PF13407 Peripla_BP_4: Peripla 86.2 12 0.00026 27.9 9.7 98 11-119 52-152 (257)
96 cd06323 PBP1_ribose_binding Pe 85.1 8.7 0.00019 28.6 8.3 95 11-117 52-149 (268)
97 COG2984 ABC-type uncharacteriz 84.4 20 0.00042 28.8 10.4 134 9-158 83-222 (322)
98 cd06305 PBP1_methylthioribose_ 82.3 18 0.0004 27.0 9.7 94 11-118 52-148 (273)
99 PRK00945 acetyl-CoA decarbonyl 82.1 15 0.00033 26.7 8.1 47 12-58 34-83 (171)
100 TIGR01359 UMP_CMP_kin_fam UMP- 81.2 2.1 4.6E-05 30.6 3.4 31 15-45 1-31 (183)
101 PTZ00088 adenylate kinase 1; P 80.9 2.1 4.6E-05 32.5 3.4 31 16-46 9-39 (229)
102 PF13207 AAA_17: AAA domain; P 79.2 2.2 4.7E-05 28.3 2.7 32 15-46 1-32 (121)
103 TIGR01351 adk adenylate kinase 77.9 2.9 6.3E-05 30.9 3.3 30 16-45 2-31 (210)
104 cd06301 PBP1_rhizopine_binding 77.7 27 0.00058 26.1 12.2 98 11-119 53-153 (272)
105 cd06289 PBP1_MalI_like Ligand- 76.5 28 0.00062 25.8 10.9 95 11-118 52-146 (268)
106 COG0563 Adk Adenylate kinase a 76.2 3.4 7.4E-05 30.1 3.2 30 16-45 3-32 (178)
107 PF00406 ADK: Adenylate kinase 76.0 2.1 4.5E-05 29.8 2.0 29 18-46 1-29 (151)
108 PF01745 IPT: Isopentenyl tran 75.5 3.4 7.4E-05 31.4 3.1 31 14-44 2-32 (233)
109 PRK14530 adenylate kinase; Pro 74.7 4.4 9.6E-05 30.1 3.6 33 13-45 3-35 (215)
110 PRK14527 adenylate kinase; Pro 73.2 4.1 8.8E-05 29.6 3.0 34 12-45 5-38 (191)
111 cd06322 PBP1_ABC_sugar_binding 72.0 38 0.00083 25.2 9.9 94 12-118 53-149 (267)
112 PRK13808 adenylate kinase; Pro 72.0 4.8 0.0001 32.5 3.3 30 16-45 3-32 (333)
113 PLN02674 adenylate kinase 71.7 5.3 0.00011 30.8 3.4 71 14-84 32-137 (244)
114 COG0324 MiaA tRNA delta(2)-iso 71.2 5.7 0.00012 31.7 3.5 34 12-45 2-35 (308)
115 cd01428 ADK Adenylate kinase ( 69.5 6.6 0.00014 28.2 3.4 30 16-45 2-31 (194)
116 cd06273 PBP1_GntR_like_1 This 69.5 44 0.00095 24.8 11.6 93 12-119 53-147 (268)
117 COG3172 NadR Predicted ATPase/ 68.4 5.7 0.00012 28.9 2.7 30 13-42 8-37 (187)
118 PRK14528 adenylate kinase; Pro 68.3 7.6 0.00016 28.2 3.5 32 15-46 3-34 (186)
119 cd06312 PBP1_ABC_sugar_binding 68.2 48 0.001 24.8 12.5 100 11-119 54-155 (271)
120 cd06295 PBP1_CelR Ligand bindi 68.1 48 0.001 24.8 11.4 90 13-118 63-154 (275)
121 cd06277 PBP1_LacI_like_1 Ligan 68.0 48 0.001 24.7 10.4 93 12-119 56-148 (268)
122 TIGR01360 aden_kin_iso1 adenyl 67.6 7.1 0.00015 27.8 3.3 33 13-45 3-35 (188)
123 PLN02200 adenylate kinase fami 67.0 8.6 0.00019 29.2 3.7 33 14-46 44-76 (234)
124 PRK01184 hypothetical protein; 67.0 7.8 0.00017 27.8 3.4 31 14-45 2-32 (184)
125 PRK00279 adk adenylate kinase; 66.9 8 0.00017 28.7 3.5 30 16-45 3-32 (215)
126 PLN02459 probable adenylate ki 64.9 8.6 0.00019 29.9 3.3 31 16-46 32-62 (261)
127 PRK14531 adenylate kinase; Pro 64.8 9.8 0.00021 27.4 3.5 31 15-45 4-34 (183)
128 PRK02496 adk adenylate kinase; 64.2 8.7 0.00019 27.6 3.2 30 16-45 4-33 (184)
129 PF00205 TPP_enzyme_M: Thiamin 64.0 5.1 0.00011 27.4 1.8 41 12-52 11-53 (137)
130 PRK14532 adenylate kinase; Pro 63.9 10 0.00022 27.3 3.5 30 16-45 3-32 (188)
131 cd06319 PBP1_ABC_sugar_binding 63.3 60 0.0013 24.2 12.7 97 11-119 52-155 (277)
132 cd06309 PBP1_YtfQ_like Peripla 63.1 61 0.0013 24.2 11.2 99 11-118 52-153 (273)
133 cd06284 PBP1_LacI_like_6 Ligan 61.2 64 0.0014 23.8 11.8 93 12-119 53-145 (267)
134 PRK14529 adenylate kinase; Pro 60.9 9 0.00019 29.0 2.8 31 16-46 3-33 (223)
135 COG1102 Cmk Cytidylate kinase 60.6 11 0.00025 27.4 3.1 33 15-47 2-34 (179)
136 cd06317 PBP1_ABC_sugar_binding 60.6 67 0.0015 23.9 10.3 98 11-118 53-154 (275)
137 PRK08118 topology modulation p 56.2 15 0.00031 26.3 3.1 31 16-46 4-34 (167)
138 PRK00091 miaA tRNA delta(2)-is 55.9 19 0.00041 28.7 3.9 35 12-46 3-37 (307)
139 cd06278 PBP1_LacI_like_2 Ligan 54.8 84 0.0018 23.1 11.1 94 11-118 51-144 (266)
140 PF13685 Fe-ADH_2: Iron-contai 53.3 99 0.0021 23.9 7.4 73 74-157 10-83 (250)
141 cd02020 CMPK Cytidine monophos 53.1 20 0.00044 24.2 3.4 31 15-45 1-31 (147)
142 PRK14526 adenylate kinase; Pro 52.7 19 0.00042 26.8 3.4 31 16-46 3-33 (211)
143 cd01542 PBP1_TreR_like Ligand- 51.8 94 0.002 22.8 9.1 93 12-119 53-145 (259)
144 PF00532 Peripla_BP_1: Peripla 50.8 1.1E+02 0.0024 23.5 8.3 97 10-119 52-149 (279)
145 cd06271 PBP1_AglR_RafR_like Li 50.0 1E+02 0.0022 22.7 11.4 93 13-119 58-150 (268)
146 PRK00023 cmk cytidylate kinase 49.2 23 0.0005 26.6 3.3 35 12-46 3-37 (225)
147 PRK08356 hypothetical protein; 48.5 30 0.00064 25.2 3.8 33 14-47 6-38 (195)
148 PRK07261 topology modulation p 46.3 29 0.00063 24.8 3.4 30 16-45 3-32 (171)
149 PRK06217 hypothetical protein; 46.2 29 0.00064 24.9 3.4 31 16-46 4-34 (183)
150 PRK00131 aroK shikimate kinase 44.6 37 0.00081 23.6 3.7 33 12-44 3-35 (175)
151 PLN02165 adenylate isopentenyl 44.2 33 0.00072 27.7 3.7 35 12-46 42-76 (334)
152 cd06291 PBP1_Qymf_like Ligand 40.2 1.5E+02 0.0033 21.9 9.5 72 35-119 72-143 (265)
153 PRK05057 aroK shikimate kinase 39.4 52 0.0011 23.5 3.8 34 12-45 3-36 (172)
154 PLN02748 tRNA dimethylallyltra 39.3 38 0.00083 28.7 3.4 34 12-45 21-54 (468)
155 TIGR00174 miaA tRNA isopenteny 39.1 42 0.00091 26.5 3.5 31 15-45 1-31 (287)
156 PRK03839 putative kinase; Prov 38.6 45 0.00098 23.7 3.4 30 16-45 3-32 (180)
157 PF00625 Guanylate_kin: Guanyl 38.4 36 0.00077 24.4 2.8 26 12-37 1-26 (183)
158 PRK13949 shikimate kinase; Pro 38.4 46 0.001 23.7 3.4 30 16-45 4-33 (169)
159 COG1880 CdhB CO dehydrogenase/ 37.8 51 0.0011 23.8 3.4 43 13-55 36-80 (170)
160 TIGR00017 cmk cytidylate kinas 36.0 56 0.0012 24.5 3.6 33 14-46 3-35 (217)
161 cd01575 PBP1_GntR Ligand-bindi 35.6 1.8E+02 0.0038 21.4 11.0 94 12-119 53-146 (268)
162 COG2875 CobM Precorrin-4 methy 35.6 2E+02 0.0044 22.2 6.5 102 14-119 103-218 (254)
163 PF03096 Ndr: Ndr family; Int 35.6 62 0.0014 25.6 3.9 57 28-91 47-106 (283)
164 cd06321 PBP1_ABC_sugar_binding 34.5 1.9E+02 0.0042 21.4 9.1 92 12-118 55-149 (271)
165 TIGR02173 cyt_kin_arch cytidyl 34.3 62 0.0013 22.4 3.5 31 15-45 2-32 (171)
166 cd00464 SK Shikimate kinase (S 33.7 60 0.0013 22.0 3.3 30 16-45 2-31 (154)
167 PF08357 SEFIR: SEFIR domain; 33.7 1.5E+02 0.0033 20.2 5.4 65 85-157 2-67 (150)
168 COG1440 CelA Phosphotransferas 33.4 38 0.00083 22.5 2.0 27 16-42 51-77 (102)
169 cd06288 PBP1_sucrose_transcrip 33.2 2E+02 0.0043 21.2 10.7 92 12-118 54-145 (269)
170 cd06281 PBP1_LacI_like_5 Ligan 33.1 2E+02 0.0044 21.3 7.8 94 12-119 53-146 (269)
171 COG0283 Cmk Cytidylate kinase 33.1 57 0.0012 24.8 3.2 66 14-86 5-71 (222)
172 PRK08611 pyruvate oxidase; Pro 33.0 68 0.0015 27.7 4.1 33 13-45 204-236 (576)
173 PRK14730 coaE dephospho-CoA ki 32.7 66 0.0014 23.5 3.5 32 14-45 2-33 (195)
174 PF13521 AAA_28: AAA domain; P 32.5 57 0.0012 22.7 3.1 26 16-42 2-27 (163)
175 PLN02840 tRNA dimethylallyltra 32.4 71 0.0015 26.7 3.9 36 11-46 19-54 (421)
176 KOG0025|consensus 32.2 2.1E+02 0.0045 23.1 6.2 47 59-119 163-209 (354)
177 PRK04182 cytidylate kinase; Pr 31.9 73 0.0016 22.2 3.6 30 15-44 2-31 (180)
178 cd06290 PBP1_LacI_like_9 Ligan 31.4 2.1E+02 0.0046 21.0 11.3 91 12-118 53-144 (265)
179 cd06293 PBP1_LacI_like_11 Liga 30.8 2.2E+02 0.0048 21.0 10.6 94 12-119 53-146 (269)
180 PRK08266 hypothetical protein; 30.1 79 0.0017 26.9 4.0 33 13-45 206-238 (542)
181 PRK07524 hypothetical protein; 30.1 75 0.0016 27.0 3.9 34 13-46 202-235 (535)
182 PRK14729 miaA tRNA delta(2)-is 29.2 78 0.0017 25.2 3.5 33 12-45 3-35 (300)
183 cd06283 PBP1_RegR_EndR_KdgR_li 29.2 2.3E+02 0.005 20.7 11.1 94 12-118 53-146 (267)
184 PRK08273 thiamine pyrophosphat 29.2 74 0.0016 27.6 3.7 33 13-45 209-241 (597)
185 PF00448 SRP54: SRP54-type pro 29.0 51 0.0011 24.3 2.3 25 13-37 1-25 (196)
186 PRK13946 shikimate kinase; Pro 28.7 85 0.0018 22.5 3.5 35 11-45 8-42 (184)
187 PRK12753 transketolase; Review 28.4 2.4E+02 0.0052 25.1 6.7 69 12-89 146-216 (663)
188 PRK13947 shikimate kinase; Pro 28.3 84 0.0018 21.9 3.3 30 16-45 4-33 (171)
189 smart00493 TOPRIM topoisomeras 27.9 93 0.002 18.4 3.1 19 140-158 38-56 (76)
190 PRK09124 pyruvate dehydrogenas 27.8 80 0.0017 27.2 3.7 33 13-45 202-234 (574)
191 PRK06457 pyruvate dehydrogenas 27.3 90 0.0019 26.7 3.9 32 13-44 196-227 (549)
192 PF01751 Toprim: Toprim domain 27.1 1.2E+02 0.0026 19.3 3.7 19 140-158 51-69 (100)
193 COG1219 ClpX ATP-dependent pro 26.4 93 0.002 25.5 3.5 67 16-93 100-170 (408)
194 PRK12339 2-phosphoglycerate ki 26.4 1.1E+02 0.0024 22.5 3.8 34 12-45 2-35 (197)
195 COG3510 CmcI Cephalosporin hyd 25.9 1.3E+02 0.0027 22.8 3.9 22 137-158 130-152 (237)
196 PF03572 Peptidase_S41: Peptid 25.9 1.1E+02 0.0024 21.1 3.6 33 10-42 88-120 (169)
197 COG3840 ThiQ ABC-type thiamine 25.3 1.4E+02 0.0031 22.5 4.0 37 4-41 16-52 (231)
198 COG4678 Muramidase (phage lamb 25.0 28 0.00061 25.2 0.3 85 7-91 67-155 (180)
199 CHL00099 ilvB acetohydroxyacid 24.9 1.2E+02 0.0025 26.3 4.2 34 13-46 218-253 (585)
200 PRK12474 hypothetical protein; 24.3 1.3E+02 0.0029 25.5 4.3 32 13-44 202-235 (518)
201 cd06310 PBP1_ABC_sugar_binding 24.0 3E+02 0.0065 20.3 10.3 96 11-118 54-152 (273)
202 PF12444 Sox_N: Sox developmen 24.0 71 0.0015 20.4 2.0 19 69-87 61-79 (84)
203 cd01543 PBP1_XylR Ligand-bindi 23.9 3E+02 0.0066 20.3 7.7 94 9-119 45-138 (265)
204 cd06285 PBP1_LacI_like_7 Ligan 23.8 3E+02 0.0065 20.2 11.2 91 12-119 53-144 (265)
205 PRK07064 hypothetical protein; 23.3 1.3E+02 0.0029 25.6 4.2 32 13-45 204-235 (544)
206 PF03283 PAE: Pectinacetyleste 23.3 4.1E+02 0.009 21.6 7.4 78 80-158 102-193 (361)
207 PRK06547 hypothetical protein; 23.2 1.3E+02 0.0028 21.6 3.5 33 12-44 14-46 (172)
208 PRK07449 2-succinyl-5-enolpyru 22.7 1.5E+02 0.0033 25.3 4.5 33 13-45 222-254 (568)
209 cd06275 PBP1_PurR Ligand-bindi 22.5 3.2E+02 0.0069 20.0 11.1 94 12-118 53-146 (269)
210 cd06270 PBP1_GalS_like Ligand 22.2 3.3E+02 0.0071 20.1 12.4 95 11-119 52-146 (268)
211 PRK05858 hypothetical protein; 22.2 1.5E+02 0.0032 25.4 4.2 33 13-45 204-238 (542)
212 PRK08199 thiamine pyrophosphat 22.2 1.5E+02 0.0032 25.5 4.2 32 13-44 205-238 (557)
213 PRK10014 DNA-binding transcrip 22.0 3.8E+02 0.0082 20.7 12.5 94 12-119 118-212 (342)
214 PRK11860 bifunctional 3-phosph 21.9 95 0.0021 27.4 3.1 34 14-47 443-476 (661)
215 PLN02470 acetolactate synthase 21.8 1.4E+02 0.0031 25.7 4.1 34 13-46 216-249 (585)
216 PRK08978 acetolactate synthase 21.4 1.5E+02 0.0033 25.3 4.1 34 13-46 197-232 (548)
217 PRK00081 coaE dephospho-CoA ki 21.4 1.6E+02 0.0034 21.4 3.8 31 14-45 3-33 (194)
218 PRK13477 bifunctional pantoate 21.4 1.3E+02 0.0029 25.9 3.7 36 12-47 283-318 (512)
219 cd01574 PBP1_LacI Ligand-bindi 21.3 3.4E+02 0.0073 19.9 12.1 91 12-118 54-145 (264)
220 TIGR00333 nrdI ribonucleoside- 21.2 74 0.0016 21.8 1.8 29 14-42 64-96 (125)
221 PRK07418 acetolactate synthase 21.1 1.5E+02 0.0033 25.8 4.2 34 13-46 225-260 (616)
222 PRK10703 DNA-binding transcrip 21.1 4E+02 0.0086 20.6 11.5 96 12-119 113-208 (341)
223 TIGR03263 guanyl_kin guanylate 21.1 1.3E+02 0.0027 21.2 3.2 27 14-40 2-28 (180)
224 PRK06965 acetolactate synthase 21.0 1.5E+02 0.0033 25.6 4.1 40 13-52 222-263 (587)
225 cd06294 PBP1_ycjW_transcriptio 21.0 3.4E+02 0.0075 19.8 11.5 93 14-119 60-152 (270)
226 TIGR02720 pyruv_oxi_spxB pyruv 20.9 1.4E+02 0.0029 25.9 3.8 34 13-46 201-234 (575)
227 cd02019 NK Nucleoside/nucleoti 20.9 1.6E+02 0.0034 17.3 3.1 23 15-37 1-23 (69)
228 cd06286 PBP1_CcpB_like Ligand- 20.9 3.4E+02 0.0074 19.8 9.8 91 12-119 53-144 (260)
229 cd01541 PBP1_AraR Ligand-bindi 20.7 3.6E+02 0.0077 19.9 6.3 95 11-119 52-150 (273)
230 PF12774 AAA_6: Hydrolytic ATP 20.7 1.6E+02 0.0034 22.4 3.7 55 14-83 33-87 (231)
231 PRK06725 acetolactate synthase 20.6 1.7E+02 0.0036 25.3 4.3 34 13-46 215-250 (570)
232 COG1105 FruK Fructose-1-phosph 20.5 4.6E+02 0.0099 21.1 6.4 21 135-155 144-165 (310)
233 cd06316 PBP1_ABC_sugar_binding 20.5 3.8E+02 0.0083 20.2 9.6 100 11-118 53-155 (294)
234 TIGR00173 menD 2-succinyl-5-en 20.4 2E+02 0.0044 23.8 4.6 32 13-44 212-244 (432)
235 PRK08322 acetolactate synthase 20.4 1.6E+02 0.0036 25.0 4.2 33 13-45 197-231 (547)
236 TIGR03457 sulphoacet_xsc sulfo 20.1 1.7E+02 0.0036 25.3 4.1 32 13-44 197-230 (579)
237 PRK08617 acetolactate synthase 20.1 1.7E+02 0.0038 25.0 4.2 34 13-46 202-237 (552)
No 1
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=99.92 E-value=3.3e-24 Score=173.59 Aligned_cols=137 Identities=31% Similarity=0.565 Sum_probs=115.6
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCC-cccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFEL-KFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~-~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..++.|||||.|+..+..++.+|..|+||+|++++.++.+++ +..||+++|+.|++..++.++++++++|+|++|++||
T Consensus 65 ~~~v~aiiGp~~s~~~~~va~ia~~~~iP~Is~~a~~~~~s~~~~~yp~~~R~~p~~~~~~~a~~~ll~~~~W~~vaiiy 144 (387)
T cd06386 65 ARKPDLILGPVCEYAAAPVARLASHWNIPMISAGALAAGFSHKKSEYSHLTRVAPSYVKMGETFSALFERFHWRSALLVY 144 (387)
T ss_pred hhCCCEEECCCCccHHHHHHHHHHhCCCcEEccccCchhhccCcccCCeeEEecCchHHHHHHHHHHHHhCCCeEEEEEE
Confidence 458999999999999999999999999999999999888887 6679999999999999999999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEeee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLD 157 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~ 157 (159)
+++++ .+.|++.++++.+.++..+ ++++....+ . .+..++.++|+++++.+||||++-
T Consensus 145 ~~~~~-----~~~~~~~~~~l~~~~~~~g-i~v~~~~~~-~--~~~~d~~~~l~~ik~~~rvii~~~ 202 (387)
T cd06386 145 EDDKQ-----ERNCYFTLEGVHHVFQEEG-YHMSIYPFD-E--TKDLDLDEIIRAIQASERVVIMCA 202 (387)
T ss_pred EcCCC-----CccceehHHHHHHHHHhcC-ceEEEEecC-C--CCcccHHHHHHHHHhcCcEEEEec
Confidence 88765 2457778999999988875 344332222 1 234589999999998779998873
No 2
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=99.91 E-value=7.6e-24 Score=175.43 Aligned_cols=137 Identities=15% Similarity=0.176 Sum_probs=117.9
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++|+|||.||..+..+|.++..++||+|+++++++.++++..||+|+||.|++..++.|+++++++|||+||++|+.
T Consensus 101 ~~~vvavIG~~~S~~s~~va~i~~~~~IP~Is~~sts~~lsd~~~yp~ffRt~psd~~q~~ai~~li~~f~W~~Vaiv~~ 180 (469)
T cd06365 101 QRKSVAVIGGPSWALSATIATLLGLYKFPQLTYGPFDPLLSDRVQFPSLYQMAPKDTSLPLGMVSLMLHFSWTWVGLVIS 180 (469)
T ss_pred CCceEEEEcCCccHHHHHHHHHhhhhcccceeeccCCccccchhhCCcceEecCCchhHHHHHHHHHHhcCCeEEEEEEe
Confidence 46899999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCC-hHHHHHHHHHHhc-CceEEEeee
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVT-PEKLKEQLIAITK-RARIIKSLD 157 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~-~~~~~~~L~~~~~-~aRIii~~~ 157 (159)
++++ +...++.+.+.+++.+ ++++....+.....+ ..++..+|+++++ .+||||++-
T Consensus 181 d~~y--------g~~~~~~~~~~~~~~g-i~I~~~~~i~~~~~~~~~~~~~~l~~i~~~~arvIvl~~ 239 (469)
T cd06365 181 DDDR--------GEQFLSDLREEMQRNG-ICLAFVEKIPVNMQLYLTRAEKYYNQIMTSSAKVIIIYG 239 (469)
T ss_pred cChh--------HHHHHHHHHHHHHHCC-eEEEEEEEecCCchhhHHHHHHHHHHhhcCCCeEEEEEc
Confidence 8765 6678899999999875 787777777653211 2477888888874 689887753
No 3
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=99.89 E-value=1.3e-22 Score=167.65 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=117.6
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
...++.|||||.+|..+..++.++..++||+|+++++++.++++..||+|+|+.|++..++.++++++++|||+||++|+
T Consensus 102 ~~~~V~aVIG~~~S~~s~ava~~~~~~~IP~Is~~sts~~Ls~~~~~~~ffRt~psd~~qa~ai~~ll~~~~W~~Vaii~ 181 (458)
T cd06375 102 SPLAIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVA 181 (458)
T ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhccccceeeccCChhhcccccCCCeEEecCCcHHHHHHHHHHHHHCCCeEEEEEE
Confidence 45689999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHh--cCceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAIT--KRARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~--~~aRIii~~ 156 (159)
+++++ +...++.+.+.+++.+ ++++....+... .+..++.+++++++ ..+||||+.
T Consensus 182 ~~~~y--------G~~~~~~~~~~~~~~g-i~i~~~~~i~~~-~~~~d~~~~l~~l~~~~~a~vVvl~ 239 (458)
T cd06375 182 SEGDY--------GETGIEAFEQEARLRN-ICIATSEKVGRS-ADRKSYDSVIRKLLQKPNARVVVLF 239 (458)
T ss_pred eCchH--------HHHHHHHHHHHHHHCC-eeEEEEEEecCC-CCHHHHHHHHHHHhccCCCEEEEEe
Confidence 98865 5567888888888875 677766777542 24568889998876 368987764
No 4
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=99.89 E-value=2.2e-22 Score=163.51 Aligned_cols=139 Identities=28% Similarity=0.542 Sum_probs=114.7
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE-E
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF-M 89 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~-i 89 (159)
..+++.|+|||.||..+..++.++..||+|+|+++++++.++++..||+++|+.|++..++.++++++++|+|+++++ +
T Consensus 71 ~~~~v~aiiGp~~S~~~~~va~~a~~~~iP~Is~~a~~~~l~~~~~~~~~~R~~p~~~~~~~a~~~~~~~~~w~~va~ii 150 (405)
T cd06385 71 FTHNPWAFIGPGCDYTASPVARFTTHWDVPLVTAGAPALGFGVKDEYATITRTGPTHKKLGEFVLHIHQHFGWRSHAMLI 150 (405)
T ss_pred HhcCCcEEECCCccchHHHHHHHHhccCCcEEccccChhhcCCcccCcceEEecCchHHHHHHHHHHHHhCCCeEEEEEE
Confidence 346889999999999999999999999999999999988999888999999999999999999999999999999985 5
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEeee
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLD 157 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~ 157 (159)
|.+++. .++.|+..++++.+.+++.+ ++++.. .+.. .+..++..+|+++++.+||||++-
T Consensus 151 ~~~~~~----~~~~~~~~~~~l~~~~~~~g-i~v~~~-~~~~--~~~~d~~~~l~~ik~~~~iii~~~ 210 (405)
T cd06385 151 YSDNKV----DDRPCYFAMEGLYMELKKNN-ITVVDL-VFEE--DDLINYTTLLQDIKQKGRVIYVCC 210 (405)
T ss_pred EecCcc----cccchHHHHHHHHHHHHhCC-eEEEEe-eccC--CchhhHHHHHHHHhhcceEEEEeC
Confidence 554432 12457778899999997764 455433 3332 235689999999998889998753
No 5
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=99.88 E-value=6.6e-22 Score=161.15 Aligned_cols=136 Identities=13% Similarity=0.154 Sum_probs=114.6
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
++++.|++||.+|..+..++.++..++||+|+++++++.++++..||+|+|+.|++..++.++++++++|+|+||++|++
T Consensus 101 ~~~V~aVIG~~~S~~s~ava~v~~~~~IP~IS~~ats~~Ls~~~~~~~ffRt~p~D~~qa~ai~~li~~~~w~~Vaii~~ 180 (403)
T cd06361 101 VPRIKAVIGAGYSEISMAVSRMLNLQLIPQVSYASTAEILSDKIRFPSFLRTVPSDFYQTKAMAHLIKKSGWNWVGIIIT 180 (403)
T ss_pred CCCeEEEECCCcchHHHHHHHHhccCCcceEecCcCCcccCCcccCCCeeECCCchHhHHHHHHHHHHHcCCcEEEEEEe
Confidence 36899999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCCh----HHHHHHHHHHhc-CceEEEee
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTP----EKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~----~~~~~~L~~~~~-~aRIii~~ 156 (159)
++++ +...++.+.+.+++.+ +|++..+.+.....+. .++..+++.++. .+||||+.
T Consensus 181 ~d~y--------G~~~~~~f~~~~~~~G-icIa~~e~~~~~~~~~~~~~~~~~~~~~~ik~~~a~vVvv~ 241 (403)
T cd06361 181 DDDY--------GRSALETFIIQAEANG-VCIAFKEILPASLSDNTKLNRIIRTTEKIIEENKVNVIVVF 241 (403)
T ss_pred cCch--------HHHHHHHHHHHHHHCC-eEEEEEEEecCccCcchhHHHHHHHHHHHHhcCCCeEEEEE
Confidence 8876 4567888888888875 7887777775521121 345556666664 68988764
No 6
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=99.88 E-value=7.3e-22 Score=163.62 Aligned_cols=136 Identities=14% Similarity=0.184 Sum_probs=116.3
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
.+.+|.|||||.||..+..++.++..+++|+|+++++++.++++..||+++|+.|++..++.++++++++|+|+||++|+
T Consensus 114 ~~~~V~aiiGp~~S~~~~ava~~~~~~~iP~Is~~ats~~ls~~~~~p~~fRt~p~d~~~~~al~~l~~~~~W~~Vaii~ 193 (472)
T cd06374 114 SKKPIVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLFKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVH 193 (472)
T ss_pred CCCCeEEEECCCcchHHHHHHHHhhhhcccccccccCchhhcccccCCceEEcCCChHHHHHHHHHHHHHCCCcEEEEEE
Confidence 35689999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc---CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK---RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~---~aRIii~~ 156 (159)
+++++ +...++.+.+.+++.+ ++++....+... ....++.++|+++++ ++|||+++
T Consensus 194 ~~~~y--------g~~~~~~~~~~~~~~g-i~i~~~~~i~~~-~~~~d~~~~l~~lk~~~~da~vvv~~ 252 (472)
T cd06374 194 TEGNY--------GESGMEAFKELAAHEG-LCIAHSDKIYSN-AGEQSFDRLLRKLRSRLPKARVVVCF 252 (472)
T ss_pred ecchH--------HHHHHHHHHHHHHHCC-eeEEEEEEecCC-CchHHHHHHHHHHHhcCCCcEEEEEE
Confidence 98765 4556788888888875 677666666432 245688889998884 57887764
No 7
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=99.87 E-value=2.4e-21 Score=160.13 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=113.4
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
.+++|.|||||.+|..+.+++.++..++||+|+++++++.++++..||+|+|+.|++..++.++++++++|+|++|++|+
T Consensus 100 ~~~~V~aviG~~~S~~t~ava~i~~~~~iP~Is~~ats~~ls~~~~~~~ffR~~p~d~~~~~ai~~~i~~~~w~~Vaii~ 179 (463)
T cd06376 100 KPEKVVGVIGASASSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLA 179 (463)
T ss_pred CCCCeEEEECCCCchHHHHHHHHhccccCcccccccCChhhcccccCCceEEccCCHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 34689999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc--CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK--RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~--~aRIii~~ 156 (159)
.++++ +...++.+.+.+++.+++++.....+... ....++.++|+++++ .+||||+.
T Consensus 180 ~~~~y--------g~~~~~~~~~~~~~~g~~~v~~~~~i~~~-~~~~d~~~~l~~ik~~~~~~vIvl~ 238 (463)
T cd06376 180 SEGNY--------GESGVEAFTQISREAGGVCIAQSIKIPRE-PRPGEFDKIIKRLLETPNARAVIIF 238 (463)
T ss_pred eCChH--------HHHHHHHHHHHHHHcCCceEEEEEecCCC-CCHHHHHHHHHHHhccCCCeEEEEe
Confidence 87764 45667888888877543344343344332 245789999999964 68887764
No 8
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=99.87 E-value=3.2e-21 Score=155.95 Aligned_cols=131 Identities=16% Similarity=0.206 Sum_probs=111.3
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
.++|.|||||.||.++..++.++..||||+|+++++++.+.++..|++|+|+.|++ +.+++.++++|+|+++++|++
T Consensus 64 ~~~V~aviGp~~S~~~~a~a~va~~~~iP~Is~~a~~~~lt~~~~y~~f~r~~~~~---~~~~~~~~~~~~w~~vaii~~ 140 (382)
T cd06371 64 EGYASAFVGPVNPGYCEAAALLAKEWDKALFSWGCVNYELDDVRSYPTFARTLPSP---SRVLFTVLRYFRWAHVAIVSS 140 (382)
T ss_pred cCCceEEECCCCchHHHHHHHHHHhcCceEEecccCchhhcCcccCCCceecCCCc---HHHHHHHHHHCCCeEEEEEEe
Confidence 46899999999999999999999999999999999998898878899999999886 567889999999999999999
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC--ceEEEeee
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR--ARIIKSLD 157 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~--aRIii~~~ 157 (159)
++++ +...++.+.+.+++.+ ++++....+.. +..++.++|+++|.. +||||++.
T Consensus 141 ~~~~--------~~~~~~~l~~~l~~~g-i~v~~~~~~~~---~~~d~~~~L~~lk~~~~~~viv~~~ 196 (382)
T cd06371 141 PQDI--------WVETAQKLASALRAHG-LPVGLVTSMGP---DEKGAREALKKVRSADRVRVVIMCM 196 (382)
T ss_pred cccc--------hHHHHHHHHHHHHHCC-CcEEEEEEecC---CHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 8764 4557888999888775 56555566643 457899999999973 58888764
No 9
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=99.87 E-value=8.4e-22 Score=155.28 Aligned_cols=139 Identities=23% Similarity=0.324 Sum_probs=107.1
Q ss_pred ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCC-cccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570 10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFEL-KFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF 88 (159)
Q Consensus 10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~-~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~ 88 (159)
..++++.|||||.|+..+..++++++.|++|+|+++++.+.+++ +..||+++|+.|+...++.++++++++|+|++|++
T Consensus 47 ~~~~~v~aviGp~~~~~~~~~~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~v~v 126 (348)
T PF01094_consen 47 LNKQGVVAVIGPSCSSSAEAVASLASEWNIPQISPGSTSPSLSDRKTRYPTFFRTVPSDSSQARALVDLLKHFGWTRVSV 126 (348)
T ss_dssp HHHHTECEEEETSSHHHHHHHHHHHHHTT-EEEESSGGSGGGGSTTTTTTTEEESSB-HHHHHHHHHHHHHHTTSSEEEE
T ss_pred ccCCCcEEEECCCcccccchhheeecccccceeeccccccccccchhhccccccccccHHHHHHHHHHhhhcCCCceeee
Confidence 35578999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCccee-eeeeccCCChHHHHHHHHHHhcCceEEEeee
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKL-ESFDEETVTPEKLKEQLIAITKRARIIKSLD 157 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~-~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~ 157 (159)
|+++++. +....+.+.+.+++.+. ..+.. ........+..++.+.|++.+..+||||++-
T Consensus 127 v~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~rvvil~~ 187 (348)
T PF01094_consen 127 VYSDDDY--------GNSLADSFQDLLRERGG-ICVAFISVVISSDSDAEELLKKLKEIKSGARVVILCS 187 (348)
T ss_dssp EEESSHH--------HHHHHHHHHHHHHHHTT-CEEEEEEEEETTTSHHHHHHHHHHHHTTTTSEEEEES
T ss_pred ecccccc--------ccccchhhhhhhccccc-ceecccccccccccchhhhhhhhhhccccceeeeeec
Confidence 9998753 44557788888877532 22222 2222211233445555555446788887653
No 10
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=99.87 E-value=4.1e-21 Score=160.67 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=117.6
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
...++.|+|||.+|..+..++.++..++||+|+++++++.++++..||+|+|+.|++..++.++++++++|+|+||++|+
T Consensus 115 ~~~~v~aVIG~~sS~~s~ava~~~~~~~IP~IS~~sss~~ls~~~~yp~ffRt~psd~~q~~Ai~~l~~~f~wk~VaiI~ 194 (510)
T cd06364 115 HIPSTIAVVGATGSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIA 194 (510)
T ss_pred CCCceEEEECCCchhHHHHHHHHhccccccccccccCCcccCCccccCCeeEcCCChHHHHHHHHHHHHHcCCeEEEEEE
Confidence 44568999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
.++++ +...++.+.+.+++.+ ++++..+.+... .+..++.+++++++. .+||||+.
T Consensus 195 ~dd~y--------G~~~~~~~~~~~~~~G-i~I~~~~~i~~~-~~~~d~~~~l~klk~~~a~vVvl~ 251 (510)
T cd06364 195 ADDDY--------GRPGIEKFREEAEERD-ICIDFSELISQY-SDEEEIQRVVEVIQNSTAKVIVVF 251 (510)
T ss_pred ecCcc--------hHHHHHHHHHHHHHCC-cEEEEEEEeCCC-CCHHHHHHHHHHHHhcCCeEEEEE
Confidence 98875 5567888989888875 777766666542 256688889988876 68888764
No 11
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=99.86 E-value=4.8e-21 Score=157.62 Aligned_cols=136 Identities=19% Similarity=0.197 Sum_probs=116.5
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
.+.++.|||||.||..+..++.++..+++|+|+++++++.++++..||+++|+.|++..++.++++++++|+|++|++|+
T Consensus 100 ~~~~v~aviG~~~S~~~~av~~~~~~~~ip~Is~~sts~~ls~~~~~~~~fR~~p~d~~~~~a~~~~l~~~~w~~vaii~ 179 (452)
T cd06362 100 SPKPVAGVIGASYSSVSIQVANLLRLFKIPQISYASTSPELSDKTRYDYFSRTVPPDSFQAQAMVDIVKAFNWTYVSTVA 179 (452)
T ss_pred CCCCeEEEECCCCCchHHHHHHHhccccCcccccccCchhhccccccCCEEEecCChHHHHHHHHHHHHHCCCcEEEEEE
Confidence 45789999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc--CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK--RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~--~aRIii~~ 156 (159)
+++++ +...++.+.+.+++.+ ++++....+... ....++.++++++++ .+||||+.
T Consensus 180 ~~~~~--------G~~~~~~~~~~~~~~g-i~i~~~~~~~~~-~~~~d~~~~l~~l~~~~~a~viil~ 237 (452)
T cd06362 180 SEGNY--------GEKGIEAFEKLAAERG-ICIAGSEKIPSS-ATEEEFDNIIRKLLSKPNARVVVLF 237 (452)
T ss_pred eCCHH--------HHHHHHHHHHHHHHCC-eeEEEEEEcCCC-CCHHHHHHHHHHHhhcCCCeEEEEE
Confidence 98764 5567888888888875 566655666542 245789999998874 58987664
No 12
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=99.86 E-value=6.8e-21 Score=154.63 Aligned_cols=138 Identities=26% Similarity=0.441 Sum_probs=109.8
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCc-ccCCeeEEeeCChhhHHHHHHHHHHHcCCc-EEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAVQSILKNFNWT-VAGFM 89 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~-~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~-~v~~i 89 (159)
.+++.++|||.||.++.+++.++..|++|+|+++++++.++++ ..||+++|+.|++..++.++..++++|+|+ ++++|
T Consensus 71 ~~~v~aviGp~~S~~~~av~~i~~~~~iP~Is~~at~~~ls~~~~~y~~~fR~~p~~~~~~~~~~~i~~~~~w~~~vaii 150 (399)
T cd06384 71 YSDPDVFFGPGCVYPTASVARFATHWRLPLITAGAPAFGFSNKTDEYRTTVRTGPSTTKLGEFVNHLHEHFNWTSRAALL 150 (399)
T ss_pred hcCCCEEECCCCchHHHHHHHHHhhcCCcEEeeccchhhhccccccCCceEEecCcHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 4678899999999999999999999999999999998888876 589999999999999999999999999999 58899
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEeee
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLD 157 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~ 157 (159)
|++++. ++..++...+++.+.+++.+ ++++. ..+.. .+..++.++|+++|..+|||+++-
T Consensus 151 y~~~~~----~~~~~~~~~~~~~~~~~~~g-i~v~~-~~~~~--~~~~d~~~~l~~ik~~~~vIi~~~ 210 (399)
T cd06384 151 YLDLKT----DDRPHYFISEGVFLALQEEN-ANVSA-HPYHI--EKNSDIIEIIQFIKQNGRIVYICG 210 (399)
T ss_pred EecCCc----cCCcceEehHHHHHHHHhcC-ceEEE-EEEec--cchhhHHHHHHHHhhcccEEEEeC
Confidence 876532 12234446777888887764 34332 22222 235689999999998899998653
No 13
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=99.84 E-value=5.9e-21 Score=151.82 Aligned_cols=133 Identities=18% Similarity=0.322 Sum_probs=110.1
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHH------HHcCCcE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSIL------KNFNWTV 85 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll------~~f~W~~ 85 (159)
.+..++++||.|.+++.++++++.+|++|+||.|+....++.| ++++|+.|+..+++..++.+. ++|+|+
T Consensus 79 ~~~gcv~lGP~CtYat~~~~~~~~~~~~P~ISaGsfglscd~k---~~LTR~~pparK~~~~~~~f~~~~~~~~~~~W~- 154 (380)
T cd06369 79 GRLGCVLLGPSCTYATFQMVDDEFNLSLPIISAGSFGLSCDYK---ENLTRLLPPARKISDFFVDFWKEKNFPKKPKWE- 154 (380)
T ss_pred CccCcEEEcCccceehhhhhhhhhcCCCceEeccccccCCCch---hhhhhcCchHHHHHHHHHHHHhcccccCCCCCc-
Confidence 4567899999999999999999999999999999987777665 389999999999999999999 599997
Q ss_pred EEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEeeeC
Q psy8570 86 AGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLDA 158 (159)
Q Consensus 86 v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~~ 158 (159)
-++||++++ ..++|++.+++|.......+ . ...|.+....+++++++|+++++.+||||+|.+
T Consensus 155 ~ayvyk~~~-----~~edCf~~i~al~a~~~~f~--~---~~~~~~~l~~~~~~~~il~~~~~~sRIiImCG~ 217 (380)
T cd06369 155 TAYVYKKQE-----NTEDCFWYINALEAGVAYFS--S---ALKFKELLRTEEELQKLLTDKNRKSNVIIMCGT 217 (380)
T ss_pred eeEEEcCCC-----CccceeeEhHhhhhhhhhhh--h---cccceeeecCchhHHHHHHHhccCccEEEEeCC
Confidence 455999885 36789999999998777654 1 222222223457899999999999999998864
No 14
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=99.84 E-value=6.1e-20 Score=147.03 Aligned_cols=135 Identities=14% Similarity=0.053 Sum_probs=108.5
Q ss_pred cceeeEEEECCCCchh---HHHHHHHHhccCCcEEccccCCCCC-CCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEE
Q psy8570 11 FVVCVDAFLGPVCDYV---IAPVARYSGVWGIPVLTAGGLVANF-ELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVA 86 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~---~~~va~~~~~~~iP~is~~~~~~~l-~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v 86 (159)
..+++.+++||.++.. +..++.++..++||+|++++.++.+ +++..|++++|+.|++..+++++++++++|+|++|
T Consensus 60 ~~~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~~~~~~~~~s~~~~~~~~~R~~p~~~~~~~ai~~ll~~~~w~~v 139 (362)
T cd06367 60 VVQVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGISGRESIFMSDKNIHSLFLQTGPSLEQQADVMLEILEEYDWHQF 139 (362)
T ss_pred cccceEEEEecCCCCccchhhhhhhhhhhhcCcEEEeeccccccccCCCcccceEeecCcHHHHHHHHHHHHHHcCCeEE
Confidence 3457999999999998 8999999999999999999998888 88889999999999999999999999999999999
Q ss_pred EEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCC--cceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 87 GFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSN--DMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~--~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
++||+++++ +...++.+.+.+++.+ ++ ++....++.. ...++..+++++++ .+|+||+.
T Consensus 140 aii~~~~~~--------g~~~~~~l~~~l~~~g-~~~~i~~~~~~~~~--~~~~~~~~l~~l~~~~~~vivl~ 201 (362)
T cd06367 140 SVVTSRDPG--------YRDFLDRVETTLEESF-VGWEFQLVLTLDLS--DDDGDARLLRQLKKLESRVILLY 201 (362)
T ss_pred EEEEEcCcc--------cHHHHHHHHHHHHhcc-cceeeeeeEEeccC--CCcchHHHHHHHHhcCCcEEEEe
Confidence 999998875 3345777888887764 45 4444444431 22266777777765 57776643
No 15
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=99.83 E-value=7.9e-20 Score=148.04 Aligned_cols=137 Identities=36% Similarity=0.662 Sum_probs=112.7
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
.+++.|||||.||..+..++.++..+++|+|+++++++.++++..||+++|+.|++..++.++++++++|+|+++++|++
T Consensus 71 ~~~v~aiiGp~~S~~~~av~~~~~~~~ip~Is~~as~~~lt~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~vaii~~ 150 (396)
T cd06373 71 QHKPDAFLGPGCEYAAAPVARFAAHWNVPVLTAGAPAAGFSDKSEYSTLTRTGPSYTKLGEFVLALHEHFNWSRAALLYH 150 (396)
T ss_pred ccCCeEEECCCccchhHHHHHHHhcCCCceECccCCccccccchhcCceeeccccHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 56899999999999999999999999999999999888888877899999999999999999999999999999999998
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCC-hHHHHHHHHHHhcCceEEEee
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVT-PEKLKEQLIAITKRARIIKSL 156 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~-~~~~~~~L~~~~~~aRIii~~ 156 (159)
+++.+ ...|...++++.+.+++.+ ++++ ...+... + ..++.++|++++..+|+||++
T Consensus 151 ~~~~~----~~~~~~~~~~~~~~~~~~g-~~v~-~~~~~~~--~~~~d~~~~l~~ik~~~~vii~~ 208 (396)
T cd06373 151 DDKND----DRPCYFTLEGVYTVLKEEN-ITVS-DFPFDED--KELDDYKELLRDISKKGRVVIMC 208 (396)
T ss_pred CCCCC----cchHHHHHHHHHHHHhhcC-ceee-EEeecCC--ccccCHHHHHHHHHhcCcEEEEe
Confidence 87531 1226677888888887764 3433 3344331 1 367889999998777887764
No 16
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=99.83 E-value=1.6e-19 Score=145.96 Aligned_cols=139 Identities=20% Similarity=0.323 Sum_probs=103.7
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
++++.|||||.||..+..++.++..|++|+|++++.++.++++..||+++|+.|++..++.++++++++|+|++|++||+
T Consensus 66 ~~~v~aiiGp~~S~~~~av~~va~~~~iP~is~~s~s~~ls~~~~~~~~~r~~p~~~~~~~a~~~l~~~~~w~~vaii~~ 145 (391)
T cd06372 66 KEHISALFGPACPEAAEVTGLLASQWNIPMFGFVGQTAKLDNRFLYDTYVKLVPPKQKIGEVLQKSLQHFGWKHIGLFGG 145 (391)
T ss_pred hcCceEEECCCCCcHHHHHHHHHhccCccEEEeecCCccccccccCCceEEecCchhhHHHHHHHHHHHCCCeEEEEEEe
Confidence 46899999999999999999999999999999999999999888899999999999999999999999999999999997
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEeee
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLD 157 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~ 157 (159)
+++.. ....+....+.+.+.++ .+ +.++..+.+.. .+.+....+++.++..+||||++-
T Consensus 146 ~~~~~---~~~~~~~~~~~~~~~~~-~~-~~i~~~~~~~~--~~~d~~~~~l~~~~~~~~vii~~~ 204 (391)
T cd06372 146 SSRDS---SWDEVDELWKAVENQLK-FH-FNITATVRYSS--SNPDLLQEKLRYISSVARVIILIC 204 (391)
T ss_pred ccccc---hhhhHHHHHHHHHHHHh-hC-EEEEEEEecCC--CChHHHHHHHHhhhccceEEEEEc
Confidence 64310 00001223344445553 22 33444444433 233334457777777899987653
No 17
>KOG1056|consensus
Probab=99.83 E-value=4.9e-20 Score=158.55 Aligned_cols=137 Identities=20% Similarity=0.192 Sum_probs=119.4
Q ss_pred ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570 10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM 89 (159)
Q Consensus 10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i 89 (159)
.....|.++|||+.|..+..++.+...++||||+|+++++.++||.+|++|.|+.|+|..|++|+++++++|||+||..+
T Consensus 121 g~sp~v~~VIG~s~Ssvsi~vanlLrlf~ipQisyaSts~~LSdk~ry~~F~RtVP~D~~Qa~Am~~il~~f~W~yVstv 200 (878)
T KOG1056|consen 121 GYSPPVVAVIGPSYSSVSIAVANLLRLFLIPQISYASTSPDLSDKTRYDYFLRTVPSDVFQAQAMVDILKKFNWNYVSTV 200 (878)
T ss_pred CCCCceeEEeCCCCchHHHHHHHHHHhhcCceeccccCCcccccchhhhceeeecCChHHHHHHHHHHHHHhCeeEeeeh
Confidence 33456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc--CceEEEee
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK--RARIIKSL 156 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~--~aRIii~~ 156 (159)
+++++| +...++++.++.++.+ +|+...++.... .....+..+++++.. ++|++|++
T Consensus 201 ~s~~dY--------GE~Gieaf~~~a~~~~-iCIa~s~ki~~~-~~~~~~~~~l~kl~~~~~a~vvV~F 259 (878)
T KOG1056|consen 201 ASEGDY--------GESGIEAFKEEAAERG-ICIAFSEKIYQL-SIEQEFDCVLRKLLETPNARVVVVF 259 (878)
T ss_pred hcCccc--------hhhhHHHHHHhHHhcC-ceEEehhhcccc-cchhHHHHHHHHHhhcCCCeEEEEe
Confidence 999886 4578899999888885 787766665553 456678888887764 68988875
No 18
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=99.82 E-value=2.5e-19 Score=145.74 Aligned_cols=136 Identities=19% Similarity=0.319 Sum_probs=111.2
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..+++.|||||.|| +..++.++..|+||+|+++++.+.++++..|++|+|+.|++..++.+++.++++|+|+++++|+
T Consensus 66 i~~~v~aiiGp~~S--~~~~a~i~~~~~iP~Is~~a~~~~l~~~~~~~~f~r~~~~~~~~~~a~~~~~~~~~w~~vaii~ 143 (404)
T cd06370 66 WKRGVVAFIGPECT--CTTEARLAAAWNLPMISYKCDEEPVSDKSKYPTFARTVPPSIQVVKSVIALLKHFNWNKFSVVY 143 (404)
T ss_pred HhcCceEEECCCch--hHHHHHHHhhcCCcEEecccCCccccccccCCCeEEcCCCHHHHHHHHHHHHHHCCCcEEEEEE
Confidence 35689999999998 4456789999999999999998888888789999999999999999999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccC----CChHHHHHHHHHHhcCceEEEeee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEET----VTPEKLKEQLIAITKRARIIKSLD 157 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~----~~~~~~~~~L~~~~~~aRIii~~~ 157 (159)
.++++ +....+.+.+.+++.+ ++++....+.... .+..++.++|++++..+|++|++.
T Consensus 144 ~~~~~--------g~~~~~~~~~~~~~~g-~~iv~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~ 205 (404)
T cd06370 144 ENDSK--------YSSVFETLKEEAELRN-ITISHVEYYADFYPPDPIMDNPFEDIIQRTKETTRIYVFIG 205 (404)
T ss_pred ecCcc--------cHHHHHHHHHHHHHcC-CEEEEEEEECCCCCchhhhHHHHHHHHHhccCCCEEEEEEc
Confidence 98865 4456777777887764 5666666665421 114678889998888889887764
No 19
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=99.82 E-value=5.5e-19 Score=135.68 Aligned_cols=135 Identities=21% Similarity=0.289 Sum_probs=111.4
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..++.|++||.|+..+..++.++..+++|+|++++..+.++++..+|+++|+.|++..++.++++++++|+|++++++|+
T Consensus 69 ~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~~v~~ 148 (298)
T cd06269 69 SRGVVAVIGPSSSSSAEAVASLLGALHIPQISYSATSPLLSDKEQFPSFLRTVPSDSSQAQAIVDLLKHFGWTWVGLVYS 148 (298)
T ss_pred CCceEEEECCCCchHHHHHHHHhccCCCcEEecccCchhhcChhhCCCeEecCCCcHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 46899999999999999999999999999999999988888888899999999999999999999999999999999999
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC-ceEEEeeeC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR-ARIIKSLDA 158 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~-aRIii~~~~ 158 (159)
++++ +....+.+.+.+++.+ +++.....+.. ...++.+.++++++. +||||.+..
T Consensus 149 ~~~~--------~~~~~~~~~~~~~~~~-~~v~~~~~~~~---~~~~~~~~l~~l~~~~~~viv~~~~ 204 (298)
T cd06269 149 DDDY--------GRRLLELLEEELEKNG-ICVAFVESIPD---GSEDIRRLLKELKSSTARVIVVFSS 204 (298)
T ss_pred cchh--------hHHHHHHHHHHHHHCC-eeEEEEEEcCC---CHHHHHHHHHHHHhcCCcEEEEEec
Confidence 8763 4555666666666643 34444444432 236788899999864 599887753
No 20
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=99.82 E-value=4.4e-19 Score=143.06 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=95.2
Q ss_pred eccceee--EEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEE
Q psy8570 9 TGFVVCV--DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVA 86 (159)
Q Consensus 9 ~~~~~~v--~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v 86 (159)
+++++++ .|||||.++..+..++++|+.++||+|+++.+.. ++ .+||+++|+.|++..+++|+++|++||||+||
T Consensus 60 ~~~~~gv~~~AIiGp~ss~~a~~V~si~~~~~IP~Is~s~~~~--~~-~~~p~~ir~~Ps~~~~~~Ai~dlI~~f~W~~v 136 (368)
T cd06383 60 DKADSAIVPHLVLDTTTCGDASEIKSVTGALGIPTFSASYGQE--GD-LEQPYLIQLMPPADDIVEAIRDIVSYYNITNA 136 (368)
T ss_pred HHHHccCCcEEEECCCcchhHHHHHHHHhccCCCEEEccCCCc--Cc-ccCceEEEEeCChHHHHHHHHHHHHHCCCcEE
Confidence 3566787 8999999999999999999999999999865422 22 37999999999999999999999999999999
Q ss_pred EEEEEeCCCcCCCCCCchH-hHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC-c-eEEEeee
Q psy8570 87 GFMFNNYGQTTGKGNSNCW-FTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR-A-RIIKSLD 157 (159)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~-a-RIii~~~ 157 (159)
++||++++ +. ..++.+.+....... +.+ . .. ...++.+.|+++++. + ||||++.
T Consensus 137 ~iIYddd~---------gl~~~l~~~l~~~~~~~~-~~v---~-~~---~~~~~~~~Lk~lk~~~~~rIIi~~s 193 (368)
T cd06383 137 AILYDDDF---------VMDHKYKSLLQNWPTRHV-ITI---I-NS---IIDEVREQIKRLRNLDIKNIFILGS 193 (368)
T ss_pred EEEEEcCc---------hhhHHHHHHHHhHHhcCC-EEE---E-ec---cchhHHHHHHHHHhCCCeEEEEEeC
Confidence 99997764 22 133344433333221 221 1 11 234688899999864 4 7777765
No 21
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=99.81 E-value=5.2e-19 Score=144.12 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=114.2
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..+++.|||||.||..+..++.++..+++|+|++++.++.++++..||+++|+.|++..++.++++++++|+|+++++++
T Consensus 104 ~~~~V~aIiGp~~S~~~~av~~i~~~~~vp~is~~~~~~~lt~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~k~vaii~ 183 (410)
T cd06363 104 YQPRVVAVIGPDSSTLALTVAPLFSFFLIPQISYGASSEVLSNKELYPSFLRTVPSDKDQIEAMVQLLQEFGWNWVAFLG 183 (410)
T ss_pred CCCCeEEEECCCccHHHHHHHHHhcccccccccccccCccccccccCCCeeEecCCcHHHHHHHHHHHHHCCCcEEEEEE
Confidence 45799999999999999999999999999999999988888887789999999999999999999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
.++++ +...++.+.+.+++.+ ++++....+........++.++|++++. .+++||+.
T Consensus 184 ~~~~~--------g~~~~~~~~~~l~~~g-i~i~~~~~~~~~~~~~~d~~~~l~~i~~~~~dvIil~ 241 (410)
T cd06363 184 SDDEY--------GRDGLQLFSELIANTG-ICIAYQGLIPLDTDPETDYQQILKQINQTKVNVIVVF 241 (410)
T ss_pred eCChh--------HHHHHHHHHHHHHHCC-eEEEEEEEecCCCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 87764 4556788888888775 5555555554321235689999999985 57877653
No 22
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=99.81 E-value=8.6e-19 Score=139.06 Aligned_cols=135 Identities=22% Similarity=0.323 Sum_probs=115.2
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
+++.+++||.||..+..++.++..+++|+|++++.++.++++..||+++|+.|++..++.++++++++|+|+++++++.+
T Consensus 90 ~~v~aiiG~~~S~~~~a~~~~~~~~~vp~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~~~~v~~l~~~ 169 (348)
T cd06350 90 PKVVAVIGPGSSSVSMAVAELLGLFKIPQISYGATSPLLSDKLQFPSFFRTVPSDTSQALAIVALLKHFGWTWVGLVYSD 169 (348)
T ss_pred CceEEEECCCccHHHHHHHHHHhcCcCceecccCCChhhccccccCCeeEecCCcHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 68999999999999999999999999999999999888888888999999999999999999999999999999999997
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEeee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSLD 157 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~~ 157 (159)
+++ +....+.+.+.+++.+ ++++....+... ....++..++++++. .+||||++-
T Consensus 170 ~~~--------g~~~~~~~~~~~~~~g-i~v~~~~~~~~~-~~~~d~~~~l~~l~~~~~~vvv~~~ 225 (348)
T cd06350 170 DDY--------GRSGLSDLEEELEKNG-ICIAFVEAIPPS-STEEDIKRILKKLKSSTARVIVVFG 225 (348)
T ss_pred chh--------HHHHHHHHHHHHHHCC-CcEEEEEEccCC-CcHHHHHHHHHHHHhCCCcEEEEEe
Confidence 754 5567788888888875 576666666542 125688999999986 468887653
No 23
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=99.78 E-value=4.3e-18 Score=137.19 Aligned_cols=134 Identities=14% Similarity=0.148 Sum_probs=105.6
Q ss_pred cceeeEEEE-CCCCch----hHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcE
Q psy8570 11 FVVCVDAFL-GPVCDY----VIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTV 85 (159)
Q Consensus 11 ~~~~v~aii-Gp~~s~----~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~ 85 (159)
..+++.|++ |+.++. .+..++.++..|+||+|++++.++.++++..|++++|+.|++..++.++++++++|+|++
T Consensus 77 i~~~V~aii~~~~~ss~~~~~~~~v~~~~~~~~iP~Is~~a~~~~ls~~~~~~~~~R~~psd~~~~~a~~~~l~~~~w~~ 156 (377)
T cd06379 77 ISNQVYAVIVSHPPTSNDHLTPTSVSYTAGFYRIPVVGISTRDSIFSDKNIHLSFLRTVPPYSHQADVWLEMLRSFKWNK 156 (377)
T ss_pred hhcceEEEEEeCCCCCcccccHHHHHHHhhCCCCcEEecccCCccccCccccccEEEecCCHHHHHHHHHHHHHHcCCeE
Confidence 356899987 344332 466789999999999999998888888877799999999999999999999999999999
Q ss_pred EEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCC----CcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 86 AGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGS----NDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 86 v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~----~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+++||+++++ +...++.+.+.+++.+ + +++..+.+.. +..++...|++++. .+|+||+.
T Consensus 157 vaii~~~~~~--------g~~~~~~~~~~~~~~g-~~~~~~v~~~~~~~~---~~~d~~~~l~~ik~~~~~vIvl~ 220 (377)
T cd06379 157 VILLVSDDHE--------GRAAQKRFETLLEERE-IEFKIKVEKVVEFEP---GEKNVTSLLQEAKELTSRVILLS 220 (377)
T ss_pred EEEEEEcCcc--------hhHHHHHHHHHHHhcC-CccceeeeEEEecCC---chhhHHHHHHHHhhcCCeEEEEE
Confidence 9999998875 3345677888887764 4 3344444533 34678899999886 68888754
No 24
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=99.78 E-value=1.1e-17 Score=131.15 Aligned_cols=133 Identities=17% Similarity=0.253 Sum_probs=107.4
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..++.|++||.|+..+..++.+|..+++|+|++++..+.+.++..+++++|+.|+...++.++++++++|+|+++++||+
T Consensus 61 ~~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~iiy~ 140 (328)
T cd06351 61 SQGVAAIFGPTSSESASAVQSICDALEIPHISISGGSEGLSDKEESSTTLQLYPSLEDLADALLDLLEYYNWTKFAIIYD 140 (328)
T ss_pred ccCcEEEECCCCHHHHHHHHHHhccCCCCeEEeecCcccccccccccceEEecCCHHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 77899999999999999999999999999999998888777767889999999999999999999999999999999999
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC-c-eEEEeeeC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR-A-RIIKSLDA 158 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~-a-RIii~~~~ 158 (159)
+++ +...++.+.+.....+ ..+....++. +.++++++|+++++. + |||+++.+
T Consensus 141 ~~~---------~~~~l~~~~~~~~~~~--~~v~~~~~~~---~~~~~~~~l~~l~~~~~~~vil~~~~ 195 (328)
T cd06351 141 SDE---------GLSRLQELLDESGIKG--IQVTVRRLDL---DDDNYRQLLKELKRSESRRIILDCSS 195 (328)
T ss_pred Cch---------HHHHHHHHHHhhcccC--ceEEEEEecC---CchhHHHHHHHHhhcccceEEEECCc
Confidence 764 4556666666555432 2333344443 223788999999864 5 88887643
No 25
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=99.77 E-value=1.1e-17 Score=133.18 Aligned_cols=134 Identities=19% Similarity=0.336 Sum_probs=112.2
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
+++.++|||.|+..+..++.++..+++|+|++++.++.++++..+|+++|+.|++..++.++++++++++|+++++|+.+
T Consensus 65 ~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~~~~~~~~~~v~ii~~~ 144 (350)
T cd06366 65 KPVVAIIGPQCSSVAEFVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTPSDSSQNPAIAALLKKFGWRRVATIYED 144 (350)
T ss_pred CCceEEECCCcHHHHHHHHHHhhcCCeeEEeccCCCccccccccCCceEEcccchHhHHHHHHHHHHHCCCcEEEEEEEc
Confidence 48999999999999999999999999999999998888877778999999999999999999999999999999999998
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+++ +....+.+.+.+++.+ +.++....+... .+..++...|++++. .+|+|+++
T Consensus 145 ~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~~-~~~~d~~~~l~~i~~~~~dvvi~~ 199 (350)
T cd06366 145 DDY--------GSGGLPDLVDALQEAG-IEISYRAAFPPS-ANDDDITDALKKLKEKDSRVIVVH 199 (350)
T ss_pred Ccc--------cchhHHHHHHHHHHcC-CEEEEEeccCCC-CChhHHHHHHHHHhcCCCeEEEEE
Confidence 764 4445678888888775 455555555432 124689999999985 68888765
No 26
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=99.77 E-value=1.3e-17 Score=134.46 Aligned_cols=137 Identities=34% Similarity=0.593 Sum_probs=114.3
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..++.|||||.||..+..++.++..+++|+|+++++.+.++++..|++++|+.|++..++.++++++++++|++++++++
T Consensus 66 ~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~Is~~~~~~~~~~~~~~~~~fr~~~~~~~~~~a~~~~l~~~~~~~v~ii~~ 145 (389)
T cd06352 66 EHNVDAFIGPGCPYACAPVARLAAHWNIPMISWGCVALSLSDKSEYPTLTRTLPPARKLGEAVLALLRWFNWHVAVVVYS 145 (389)
T ss_pred hcCCcEEECCCChhHHHHHHHHHhcCCCCEecccccccccCccccCCceeecCCcHHHHHHHHHHHHHHcCceEEEEEEe
Confidence 46899999999999999999999999999999999888888777899999999999999999999999999999999998
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEeee
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLD 157 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~ 157 (159)
++.. .|...++.+.+.+++.+ ++++....+.... +..++..+|++++..+||||++.
T Consensus 146 ~~~~-------~g~~~~~~~~~~~~~~G-~~v~~~~~~~~~~-~~~d~~~~l~~i~~~~~vii~~~ 202 (389)
T cd06352 146 DDSE-------NCFFTLEALEAALREFN-LTVSHVVFMEDNS-GAEDLLEILQDIKRRSRIIIMCG 202 (389)
T ss_pred cCCc-------cHHHHHHHHHHHHHhcC-CeEEEEEEecCCc-cchhHHHHHHHhhhcceEEEEEC
Confidence 7641 26677888889887765 4665555564421 14678889999987668887764
No 27
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.76 E-value=1.3e-17 Score=134.38 Aligned_cols=126 Identities=12% Similarity=0.181 Sum_probs=99.7
Q ss_pred eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570 9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF 88 (159)
Q Consensus 9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~ 88 (159)
+++++||.|||||.++.++..++++|...+||++++..+ .. .. .++++|+.|+ +++|+++++++|||++|++
T Consensus 51 ~~~~~gV~AI~Gp~s~~~a~~v~sic~~~~vP~i~~~~~--~~-~~--~~~~i~~~P~---~~~Ai~diI~~~~W~~v~i 122 (364)
T cd06390 51 SQFSKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFP--VD-TS--NQFVLQLRPE---LQDALISVIEHYKWQKFVY 122 (364)
T ss_pred HHhhcCceEEEccCChhHHHHHHHhhcCCCCCceecCCC--CC-CC--CceEEEeChh---HHHHHHHHHHHcCCcEEEE
Confidence 468899999999999999999999999999999987553 12 22 2347999998 8999999999999999999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
||+++ + +...++.|.+.+.+.+ +++.....+.. +.++++++|+++++ ..|+||+
T Consensus 123 IYd~d-~--------g~~~lq~l~~~~~~~~-~~I~~~~~~~~---~~~d~~~~L~~ik~~~~rvIVl 177 (364)
T cd06390 123 IYDAD-R--------GLSVLQKVLDTAAEKN-WQVTAVNILTT---TEEGYRKLFQDLDKKKERLIVV 177 (364)
T ss_pred EEeCC-c--------cHHHHHHHHHhhhccC-ceeeEEEeecC---ChHHHHHHHHhccccCCeEEEE
Confidence 99755 3 6678999999888875 45444333332 35689999999986 4666554
No 28
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=99.76 E-value=2.5e-17 Score=133.27 Aligned_cols=129 Identities=9% Similarity=0.151 Sum_probs=101.2
Q ss_pred ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570 10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM 89 (159)
Q Consensus 10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i 89 (159)
.+.++|.|||||.||..+..++.++..++||+|+++++++.++++. ++++|+.|++..++.+++.++++|+|++|++|
T Consensus 68 ~l~~~V~AiiGp~~S~~~~av~~i~~~~~iP~Is~~~t~~~lt~~~--~~~~~~~~~~~~~~~a~~~~~~~~~wk~vail 145 (384)
T cd06393 68 QLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDNKD--TFYVNLYPDYASLSHAILDLVQYLKWRSATVV 145 (384)
T ss_pred ccccCcEEEECCCChHHHHHHHHHHhccCCCeEeccCCCcccCccc--eeEEEeccCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3457999999999999999999999999999999998887777653 35788889998999999999999999999999
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC-ceEEE
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR-ARIIK 154 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~-aRIii 154 (159)
|++++ +...++.+.+..++.+ ++++ ...+.. +..+++.+|+++|.. .++||
T Consensus 146 y~~~~---------g~~~l~~~~~~~~~~g-~~v~-~~~~~~---~~~d~~~~L~~ik~~~~~~ii 197 (384)
T cd06393 146 YDDST---------GLIRLQELIMAPSRYN-IRLK-IRQLPT---DSDDARPLLKEMKRGREFRII 197 (384)
T ss_pred EeCch---------hHHHHHHHHHhhhccC-ceEE-EEECCC---CchHHHHHHHHHhhcCceEEE
Confidence 97652 4455667777676654 3432 233432 346899999999864 44443
No 29
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=99.75 E-value=2.5e-17 Score=131.30 Aligned_cols=130 Identities=16% Similarity=0.205 Sum_probs=95.0
Q ss_pred ccceeeEEEECCCCchh-HHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570 10 GFVVCVDAFLGPVCDYV-IAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF 88 (159)
Q Consensus 10 ~~~~~v~aiiGp~~s~~-~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~ 88 (159)
.+.++|.|||||.+|.. +..++.+|...+||+|+++..........+|++ +++.|++..+++|+++|+++|+|+++++
T Consensus 61 ~l~~gV~AIiGp~ss~~~~~~v~~i~~~~~VP~Is~~~~~~~~~~~~~~~~-i~l~P~~~~~~~Ai~dli~~~~W~~v~~ 139 (333)
T cd06394 61 ILPKGVVSVLGPSSSPASSSIVSHICGEKEIPHFKVGPEETPKLQYLRFAS-VNLHPSNEDISVAVAGILNSFNYPTASL 139 (333)
T ss_pred HHhcCeEEEECCCCchHHHHHHHHHhhccCCceEEeccccCcccccccceE-EEecCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 34779999999999965 579999999999999998754321112224444 8999999999999999999999999999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
||++++ +...++++.+.....+ ..+..... .+..+++.+|+++++ ..|+||+
T Consensus 140 iYe~d~---------~l~~L~~~l~~~~~~~--~~i~~~~~----~~~~d~~~~L~~ik~~~~~~iVv 192 (333)
T cd06394 140 ICAKAE---------CLLRLEELLRQFLISK--ETLSVRML----DDSRDPTPLLKEIRDDKTATIII 192 (333)
T ss_pred EEeCcH---------HHHHHHHHHHhhcccC--CceeeEEc----cCcccHHHHHHHHHhcCCCEEEE
Confidence 999874 6666666666543322 12222221 134579999999986 4566553
No 30
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.74 E-value=3.6e-17 Score=132.15 Aligned_cols=128 Identities=11% Similarity=0.218 Sum_probs=99.7
Q ss_pred eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570 9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF 88 (159)
Q Consensus 9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~ 88 (159)
+++.+||.||+||..+.++..++++|...+||+|++..+. . ...++.+++.|+ ++.|+++++++|+|+++.+
T Consensus 58 ~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~---~--~~~~~~l~l~P~---l~~Ai~diI~~~~Wr~~~~ 129 (372)
T cd06387 58 SQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPT---D--ADVQFVIQMRPA---LKGAILSLLAHYKWEKFVY 129 (372)
T ss_pred HHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCC---C--CCCceEEEEChh---HHHHHHHHHHhcCCCEEEE
Confidence 4788999999999999999999999999999999875431 1 223556899998 8999999999999999999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC-c-eEEEee
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR-A-RIIKSL 156 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~-a-RIii~~ 156 (159)
||+++ ++...++.|.+.+...+ ..+..+.+... .+.++++.+|+++++. . |||+.|
T Consensus 130 iYd~d---------~gl~~Lq~L~~~~~~~~--~~V~~~~v~~~-~~~~~~~~~l~el~~~~~r~iIld~ 187 (372)
T cd06387 130 LYDTE---------RGFSILQAIMEAAVQNN--WQVTARSVGNI-KDVQEFRRIIEEMDRRQEKRYLIDC 187 (372)
T ss_pred EecCc---------hhHHHHHHHHHhhccCC--ceEEEEEeccC-CchHHHHHHHHHhccccceEEEEEC
Confidence 99654 37788999999887765 33444455432 2456889999999864 3 344444
No 31
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=99.74 E-value=5.3e-17 Score=130.76 Aligned_cols=138 Identities=11% Similarity=0.044 Sum_probs=93.1
Q ss_pred eccce-eeEEEE-CCCCch--hHHHHHHHHhccCCcEEccccCC-CCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCC
Q psy8570 9 TGFVV-CVDAFL-GPVCDY--VIAPVARYSGVWGIPVLTAGGLV-ANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNW 83 (159)
Q Consensus 9 ~~~~~-~v~aii-Gp~~s~--~~~~va~~~~~~~iP~is~~~~~-~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W 83 (159)
+.+++ +|.|+| ||.++. .+..++.+++.++||+|+..+.+ ..++++..+|+|+|+.|++..++.|+++|++||+|
T Consensus 56 ~ll~~~~V~aiIfgp~~~~~~~a~~~s~~~~~~~vP~is~~~~s~~~ls~~~~~p~flr~~Psd~~q~~Ai~~Ii~~f~W 135 (362)
T cd06378 56 DLLSTTKVHGVVFEDDTDQEAVAQILDFISAQTFLPILGIHGGSSMIMAAKDSGSTFLQFGPSIEQQAAVMLKIMEEYDW 135 (362)
T ss_pred HHhcccceEEEEecCCCCccccchhhhhhhhceeccEEEecccccccccCCCCCceEEEeCCCHHHHHHHHHHHHHHCCC
Confidence 44544 599755 999987 34567777788999999986554 36678788999999999999999999999999999
Q ss_pred cEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 84 TVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 84 ~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
++|++||++++. ....++.+.+.+.... ++......+.....+......+|+++++ .+||||+
T Consensus 136 ~~v~iV~~~~~g--------~~~~~~~l~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~l~~lk~~~arViVl 199 (362)
T cd06378 136 HAFSVVTSRFPG--------YDDFVSAVRTTVDNSF-VGWELQSVLTLDMSDDDGDARTQRQLKKLESQVILL 199 (362)
T ss_pred eEEEEEEEcCCC--------HHHHHHHHHHHHhhcc-cceeEEEEEeeccCCCcchHHHHHHHHhcCCCEEEE
Confidence 999999987641 1112333444333321 2221111122111122345677777774 6888765
No 32
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=99.72 E-value=8.3e-17 Score=130.98 Aligned_cols=107 Identities=10% Similarity=0.048 Sum_probs=83.5
Q ss_pred eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccC-----------CCCCCCcccCCeeEEeeCChhhHHHHHHHH
Q psy8570 9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGL-----------VANFELKFEYPTLTRMMGSFSLVGQAVQSI 77 (159)
Q Consensus 9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~-----------~~~l~~~~~~~~~~r~~p~~~~~~~a~~~l 77 (159)
+++++||.|||||.++.++..++++|..++||+|+++.. .+.+ ...+|+ +++.|+ ..+++|+++|
T Consensus 57 ~l~~~gV~AI~Gp~s~~~a~~v~sic~~l~VP~is~~~~~~~~~~~~~~~~p~~-~~~~~~--~~lrp~-~~~~~Ai~dl 132 (400)
T cd06392 57 DLMTQGILALVTSTGCASANALQSLTDAMHIPHLFVQRNSGGSPRTACHLNPSP-EGEEYT--LAARPP-VRLNDVMLKL 132 (400)
T ss_pred HHHhcCeEEEECCCchhHHHHHHHHhccCcCCcEeecccccccccccccCCCCc-CcCcee--EEecCc-hHHHHHHHHH
Confidence 467899999999999999999999999999999997542 1222 223566 666665 4688899999
Q ss_pred HHHcCCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeee
Q psy8570 78 LKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFD 130 (159)
Q Consensus 78 l~~f~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~ 130 (159)
++||+|++|++||+ +++ +...+++|.+.+.+.+ ..+....++
T Consensus 133 V~~~~W~~v~~iYD-~d~--------gl~~lq~L~~~~~~~~--~~I~~~~v~ 174 (400)
T cd06392 133 VTELRWQKFIVFYD-SEY--------DIRGLQSFLDQASRLG--LDVSLQKVD 174 (400)
T ss_pred HHhCCCcEEEEEEE-Ccc--------cHHHHHHHHHHHhhcC--ceEEEEEcc
Confidence 99999999999995 442 7788999999888875 344444443
No 33
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=99.72 E-value=2e-16 Score=127.51 Aligned_cols=132 Identities=12% Similarity=0.220 Sum_probs=100.0
Q ss_pred eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570 9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF 88 (159)
Q Consensus 9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~ 88 (159)
++++++|.|||||.|+.++..++.+|..++||+|+++++.+.+. ..+++++|+.|+ +..++++++++|+|+++++
T Consensus 57 ~ll~~~V~aiiGp~~s~~~~~~~~~~~~~~iP~i~~~~~~~~l~--~~~~~~fr~~p~---~~~a~~~~~~~~~wk~vai 131 (382)
T cd06380 57 SQLSRGVFAIFGSYDKSSVNTLTSYSDALHVPFITPSFPTNDLD--DGNQFVLQMRPS---LIQALVDLIEHYGWRKVVY 131 (382)
T ss_pred HHHhcCcEEEEecCcHHHHHHHHHHHhcCCCCeEecCCCcccCC--CCCcEEEEeccc---hhHHHHHHHHhcCCeEEEE
Confidence 35567999999999999999999999999999999998877663 357888999886 3568999999999999999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
||++++ +...++.+.+.+++.+....+....+... .+..++...|+++|+ ..|+||+
T Consensus 132 i~~~~~---------~~~~~~~~~~~~~~~g~~i~v~~~~~~~~-~~~~d~~~~L~~ik~~~~~~iil 189 (382)
T cd06380 132 LYDSDR---------GLLRLQQLLDYLREKDNKWQVTARRVDNV-TDEEEFLRLLEDLDRRKEKRIVL 189 (382)
T ss_pred EECCCc---------chHHHHHHHHHHhccCCceEEEEEEecCC-CcHHHHHHHHHHhhcccceEEEE
Confidence 997653 34567788887877642011222233221 134689999999996 4676665
No 34
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=99.68 E-value=6.6e-16 Score=125.91 Aligned_cols=103 Identities=9% Similarity=0.091 Sum_probs=79.9
Q ss_pred eccceeeEEEECCCCchhHHHHHHHHhccCCcEEcc----ccCC-----CCCC-CcccCCeeEEeeCChhhHHHHHHHHH
Q psy8570 9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA----GGLV-----ANFE-LKFEYPTLTRMMGSFSLVGQAVQSIL 78 (159)
Q Consensus 9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~----~~~~-----~~l~-~~~~~~~~~r~~p~~~~~~~a~~~ll 78 (159)
++++++|.|||||.....+..++++|..|++|+|+. ++++ +.++ ++..||+++| |+ ..+++|+++|+
T Consensus 57 ~l~~~gv~ai~Gp~~~~~~~~v~~~~~~~~vP~i~~~~~~~~t~~~~~~~~~~~~~~~y~~~~r--p~-~~~~~ai~~li 133 (400)
T cd06391 57 ELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTAGTPRSSCGLTRSNRNDDYTLSVR--PP-VYLNDVILRVV 133 (400)
T ss_pred HHHhCCeEEEECCCcchHHHHHHHHhccCcCCeEEeecccccCccccCCCCCCCCcccceEEec--Ch-HHHHHHHHHHH
Confidence 456889999999977777789999999999999973 3322 2233 3567887777 54 67899999999
Q ss_pred HHcCCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcc
Q psy8570 79 KNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDM 124 (159)
Q Consensus 79 ~~f~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~ 124 (159)
++|||++++++++++. +...++.|.+.+.+.+ +++.
T Consensus 134 ~~f~W~~v~i~~d~~~---------~~~~l~~l~~~~~~~~-i~I~ 169 (400)
T cd06391 134 TEYAWQKFIIFYDTDY---------DIRGIQEFLDKVSQQG-MDVA 169 (400)
T ss_pred HHcCCcEEEEEEeCCc---------cHHHHHHHHHHHHHcC-CeEE
Confidence 9999999998766542 4678888998888875 4544
No 35
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=99.67 E-value=2.5e-15 Score=121.33 Aligned_cols=136 Identities=10% Similarity=0.026 Sum_probs=96.1
Q ss_pred cceeeEEEECC-CCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570 11 FVVCVDAFLGP-VCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM 89 (159)
Q Consensus 11 ~~~~v~aiiGp-~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i 89 (159)
+.+||.||||| ..+.++..+..+|+.++||+|++........+...+...+++.|+..+++.|+++++++|||+++++|
T Consensus 78 l~~GV~AIfg~p~s~~~~~~v~sic~~l~IP~I~~~~~~~~~~~~~~~~l~L~l~P~~~~l~~a~~~ll~~~~W~~f~~i 157 (382)
T cd06377 78 VVQGVSALLAFPQTRPELVQLDFVSAALEIPVVSIVRREFPRGSQNPFHLQMSWASPLSTLLDVLLSVLQRNGWEDVSLV 157 (382)
T ss_pred hhCCeEEEEecCCCHHHHHHHHHHhcCCCCCEEEecCCcccccCCCceeEEEEecCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 58999999995 87788899999999999999998554322322233444467899999999999999999999999999
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccC---CChHHH-HHHHHHHhcCc-eEEEeeeC
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEET---VTPEKL-KEQLIAITKRA-RIIKSLDA 158 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~---~~~~~~-~~~L~~~~~~a-RIii~~~~ 158 (159)
|+++. +...++.|.+.....+ ....+.+.... .+..++ +++|+++++.. .-.|++|+
T Consensus 158 y~~~~---------gl~~lq~l~~~~~~~~---~~~~i~v~~~~~~~~d~~~~~~~~L~~i~~~~~~~~ill~c 219 (382)
T cd06377 158 LCRER---------DPTGLLLLWTNHARFH---LGSVLNLSRNDPSTADLLDFLRAQLELLKDPPGPAVVLFGC 219 (382)
T ss_pred EecCc---------CHHHHHHHHHHhcccc---cCceEEEEeccCccCChhHHHHHHHHHhhcccCceEEEEEC
Confidence 99874 5556677766555432 12233332211 134556 89999998643 33344443
No 36
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.66 E-value=1.5e-15 Score=122.70 Aligned_cols=120 Identities=12% Similarity=0.168 Sum_probs=93.3
Q ss_pred eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570 9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF 88 (159)
Q Consensus 9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~ 88 (159)
+++++||.|||||.++.++..++.+|...+||+|+++.+. + ..+.+.+++.|+ +..++++++++|+|+++++
T Consensus 58 ~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~----~-~~~~f~i~~~p~---~~~a~~~~i~~~~wk~vai 129 (371)
T cd06388 58 SQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPT----E-GESQFVLQLRPS---LRGALLSLLDHYEWNRFVF 129 (371)
T ss_pred HHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccc----c-CCCceEEEeChh---hhhHHHHHHHhcCceEEEE
Confidence 5788999999999999999999999999999999976541 1 245556777887 5789999999999999999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR 149 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~ 149 (159)
+|++++ ++..++.+.+.+++.+ ..+ ....... .+..+++.+|+++++.
T Consensus 130 iYd~~~---------~~~~lq~l~~~~~~~g-~~v-~~~~~~~--~~~~d~~~~L~~ik~~ 177 (371)
T cd06388 130 LYDTDR---------GYSILQAIMEKAGQNG-WQV-SAICVEN--FNDASYRRLLEDLDRR 177 (371)
T ss_pred EecCCc---------cHHHHHHHHHhhHhcC-Cee-eeEEecc--CCcHHHHHHHHHhccc
Confidence 997553 5677889988888765 222 2222222 1245899999999864
No 37
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=99.66 E-value=2.2e-15 Score=118.95 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=94.4
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..++|.+||||.||..+..++.++..+++|+|++++..+.++ .+++++|+.|++..++.++++++++|+|+++++++
T Consensus 60 i~~~V~aiiG~~~S~~~~av~~~~~~~~vP~Is~~~~~~~~~---~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~vavl~ 136 (327)
T cd06382 60 LQQGVAAIFGPSSSEASSIVQSICDAKEIPHIQTRWDPEPKS---NRQFTINLYPSNADLSRAYADIVKSFNWKSFTIIY 136 (327)
T ss_pred hhcCcEEEECCCChhHHHHHHHHHhccCCCceeccCCcCccc---cccceEEeCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 445999999999999999999999999999999887766655 34677999999999999999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCC--cceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSN--DMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~--~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
++++ +. ..+.+.+++.+ .. .+....+.. .. ++...|++++. .+++||+
T Consensus 137 ~~~~---------~~---~~l~~~~~~~~-~~g~~v~~~~~~~---~~-d~~~~l~~i~~~~~d~vv~ 187 (327)
T cd06382 137 ESAE---------GL---LRLQELLQAFG-ISGITITVRQLDD---DL-DYRPLLKEIKNSGDNRIII 187 (327)
T ss_pred cChH---------HH---HHHHHHHHhhc-cCCCeEEEEEccC---Cc-cHHHHHHHHHhcCceEEEE
Confidence 8763 32 33444444332 11 223333432 23 89999999986 4665544
No 38
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.66 E-value=1.9e-15 Score=122.04 Aligned_cols=127 Identities=12% Similarity=0.181 Sum_probs=97.8
Q ss_pred eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570 9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF 88 (159)
Q Consensus 9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~ 88 (159)
+++++||.|||||..+.++..++.+|...+||+|++.++. + ..+++.+++.|+ +..++++++++|+|+++++
T Consensus 52 ~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~----~-~~~~f~~~~~p~---~~~ai~d~i~~~~wk~vai 123 (370)
T cd06389 52 SQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPT----D-GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAY 123 (370)
T ss_pred HHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCC----C-CCCceEEEecch---hhhHHHHHHHhcCCcEEEE
Confidence 5788999999999999999999999999999999876542 2 256778899988 6899999999999999999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeec--cCCChHHHHHHHHHHhc-CceEEE
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDE--ETVTPEKLKEQLIAITK-RARIIK 154 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~--~~~~~~~~~~~L~~~~~-~aRIii 154 (159)
+|+++ + +...++.+.+.+++.+ ..++ ...... ......+++.+|++++. ..|+||
T Consensus 124 lYdsd-~--------gl~~lq~l~~~~~~~g-~~V~-~~~~~~i~~~~~~~d~~~~L~~ik~~~~~~Ii 181 (370)
T cd06389 124 LYDSD-R--------GLSTLQAVLDSAAEKK-WQVT-AINVGNINNDRKDEAYRSLFQDLENKKERRVI 181 (370)
T ss_pred EecCc-h--------HHHHHHHHHHhhccCC-ceEE-EEEeecCCCccchHHHHHHHHHhccccceEEE
Confidence 99743 3 7778899998888765 2222 112111 11234589999999985 445443
No 39
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=99.61 E-value=2.1e-14 Score=112.98 Aligned_cols=127 Identities=14% Similarity=0.251 Sum_probs=95.4
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..+++.++|||.||..+..++.++..+++|+|++++.++.+.. .+. +++.|+...++.++++++++|+|+++++++
T Consensus 59 i~~~V~aiiG~~~S~~~~av~~i~~~~~ip~is~~~~~~~~~~--~~~--~~~~~~~~~~~~a~~~~~~~~~w~~vaii~ 134 (324)
T cd06368 59 LSQGVAAIFGPSSSSSANTVQSICDALEIPHITTSWSPNPKPR--QFT--INLYPSMRDLSDALLDLIKYFGWRKFVYIY 134 (324)
T ss_pred HhcCcEEEECCCCHHHHHHHHHHHhccCCCcEEecCCcCCCCC--cce--EEecCCHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 3468999999999999999999999999999999988776652 234 555677778999999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
+++. +...++.+.+.+.+.+ ..++ ...+.. ..+++++.|.+++. .+++||+
T Consensus 135 ~~~~---------~~~~l~~~~~~~~~~g-~~v~-~~~~~~---~~~d~~~~l~~i~~~~~d~Vi~ 186 (324)
T cd06368 135 DSDE---------GLLRLQELLDALSPKG-IQVT-VRRLDD---DTDMYRPLLKEIKREKERRIIL 186 (324)
T ss_pred CCcH---------hHHHHHHHHHhhccCC-ceEE-EEEecC---CchHHHHHHHHHhhccCceEEE
Confidence 7653 4456677777776654 2333 223332 22379999999986 4555543
No 40
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=99.57 E-value=4.5e-14 Score=111.01 Aligned_cols=132 Identities=11% Similarity=0.091 Sum_probs=107.9
Q ss_pred eeeEEEECCCCchhHHHH-HHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 13 VCVDAFLGPVCDYVIAPV-ARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~v-a~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
++|.+|+||.||..+..+ +.++...++|+|++++.++.+.++..+++++|+.|++..++.++++++..++|+++++|+.
T Consensus 66 ~~v~~viG~~~s~~~~a~~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~~~vail~~ 145 (312)
T cd06346 66 DGVPGIVGAACSGVTIAALTSVAVPNGVVMISPSSTSPTLTTLDDNGLFFRTAPSDALQGQALAQLAAERGYKSVATTYI 145 (312)
T ss_pred cCCCEEEccccchhhHhhhhhhhccCCcEEEecCCCCccceecCCCceEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 589999999999999999 8999999999999998888888776678999999999999999999999999999999998
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
++++ +....+.+.+.+++.+ +.++....++. ...++...+.++++ ..++|+++
T Consensus 146 ~~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~v~~l~~~~pd~v~~~ 199 (312)
T cd06346 146 NNDY--------GVGLADAFTKAFEALG-GTVTNVVAHEE---GKSSYSSEVAAAAAGGPDALVVI 199 (312)
T ss_pred cCch--------hhHHHHHHHHHHHHcC-CEEEEEEeeCC---CCCCHHHHHHHHHhcCCCEEEEe
Confidence 7764 3445677777887765 45555555543 34578888888875 56766554
No 41
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=99.54 E-value=9.2e-14 Score=110.23 Aligned_cols=131 Identities=10% Similarity=0.101 Sum_probs=104.6
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC--CcEEEEEE
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN--WTVAGFMF 90 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~--W~~v~~i~ 90 (159)
+++.+|+||.|+..+..++.++..+++|+|++++..+.+. +..+++++|+.|+...+..+++.++++++ |+++++++
T Consensus 70 ~~v~aviG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 148 (345)
T cd06338 70 DKVDFLLGPYSSGLTLAAAPVAEKYGVPMVAGSGASDSIF-AQGFKYVFGTLPPASQYAKSLLEMLVALDPRPKKVAILY 148 (345)
T ss_pred cCccEEecCCcchhHHHHHHHHHHhCCcEEecCCCCchHh-hcCCceEEEecCchHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 4899999999999999999999999999999988776665 45689999999999999999999999998 99999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
.++.+ +....+.+.+.+++.+ +.++....++. ...++...++++++ .+++|+++
T Consensus 149 ~~~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~---~~~d~~~~v~~l~~~~~d~i~~~ 203 (345)
T cd06338 149 ADDPF--------SQDVAEGAREKAEAAG-LEVVYDETYPP---GTADLSPLISKAKAAGPDAVVVA 203 (345)
T ss_pred cCCcc--------cHHHHHHHHHHHHHcC-CEEEEEeccCC---CccchHHHHHHHHhcCCCEEEEC
Confidence 87754 3345677777777765 45444444543 33578888888875 46777654
No 42
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=99.53 E-value=9.2e-14 Score=109.48 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=102.5
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHH-HHcCCcEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSIL-KNFNWTVAGFM 89 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll-~~f~W~~v~~i 89 (159)
..+++.+|+||.|+..+..++.++..+++|+|++++....+.++ .|++++|+.|++..++.++++++ ++++|++++++
T Consensus 63 i~~~v~aiiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 141 (334)
T cd06342 63 VDDGVVGVVGHLNSGVTIPASPIYADAGIVMISPAATNPKLTER-GYKNVFRVVARDDQQGPAAAKYAVETLKAKKVAII 141 (334)
T ss_pred HhCCceEEECCCccHhHHHhHHHHHhCCCeEEecCCCCchhhcC-CCceEEeccCCcHHHHHHHHHHHHHhcCCCEEEEE
Confidence 34489999999999999999999999999999988776555543 68999999999999999999975 58999999999
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
+.++.+ +....+.+.+.++..+ +.++....++. ...++...++++++ ..++|+.
T Consensus 142 ~~~~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~---~~~d~~~~l~~i~~~~~~~vi~ 196 (334)
T cd06342 142 DDKTAY--------GQGLADEFKKALKAAG-GKVVAREGTTD---GATDFSAILTKIKAANPDAVFF 196 (334)
T ss_pred eCCcch--------hhHHHHHHHHHHHHcC-CEEEEEecCCC---CCccHHHHHHHHHhcCCCEEEE
Confidence 987753 4445677777777664 34444444433 34678888888876 4666654
No 43
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=99.52 E-value=1.8e-13 Score=104.85 Aligned_cols=134 Identities=19% Similarity=0.253 Sum_probs=104.6
Q ss_pred cce-eeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570 11 FVV-CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM 89 (159)
Q Consensus 11 ~~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i 89 (159)
... ++.++|||.|+..+..++.++..+++|+|++++....+.++..+++++|+.|+...++..+++++++++|++++++
T Consensus 63 ~~~~~v~~iig~~~~~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~iv 142 (299)
T cd04509 63 CQQEGVDALVGPVSSGVALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYNWKKVAIL 142 (299)
T ss_pred hcccCceEEEcCCCcHHHHHHHHHHhhCCceEEeccCCCcccccccCCCCEEEecCCcHHHHHHHHHHHHHcCCcEEEEE
Confidence 344 8999999999988888999999999999999887777766667899999999999999999999999999999999
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+.++.. +....+.+.+.+++.+ +..+....+.. ..+++.++++++++ ..++|+++
T Consensus 143 ~~~~~~--------~~~~~~~~~~~~~~~g-~~i~~~~~~~~---~~~~~~~~~~~l~~~~~~~v~~~ 198 (299)
T cd04509 143 YDDDSY--------GRGLLEAFKAAFKKKG-GTVVGEEYYPL---GTTDFTSLLQKLKAAKPDVIVLC 198 (299)
T ss_pred ecCchH--------HHHHHHHHHHHHHHcC-CEEEEEecCCC---CCccHHHHHHHHHhcCCCEEEEc
Confidence 987642 5556777778887764 33333333332 22467778887765 46777665
No 44
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=99.51 E-value=3.2e-13 Score=107.38 Aligned_cols=131 Identities=16% Similarity=0.152 Sum_probs=102.6
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCC---CcccCCeeEEeeCChhhHHHHHHHHHHH-----cCCc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFE---LKFEYPTLTRMMGSFSLVGQAVQSILKN-----FNWT 84 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~---~~~~~~~~~r~~p~~~~~~~a~~~ll~~-----f~W~ 84 (159)
+++.+++||.|+..+..++.++..+++|+|++++..+.+. ++..+++++|+.|++..+..+++.++.+ ++|+
T Consensus 66 ~~v~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~t~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (344)
T cd06345 66 DKVDAVVGGYSSEVVLALQDVAAENKVPFIVTGAASPEITTADDYETYKYVFRAGPTNSSYAQSVADALKETLVDKHGFK 145 (344)
T ss_pred CCceEEECCcchHHHHHHHHHHHHcCCcEEeccCCCCcccccccccCCceEEecCCCcHHHHHHHHHHHHHhhcccCCCc
Confidence 4899999999999999999999999999999887766665 3567899999999999999999998876 8999
Q ss_pred EEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 85 VAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 85 ~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
+|++++.++.+ +....+.+.+.+++.+ +.++....+.. +..++...+.+++. ..++|++
T Consensus 146 ~va~l~~~~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~v~~l~~~~~d~v~~ 205 (344)
T cd06345 146 TAAIVAEDAAW--------GKGIDAGIKALLPEAG-LEVVSVERFSP---DTTDFTPILQQIKAADPDVIIA 205 (344)
T ss_pred eEEEEecCchh--------hhHHHHHHHHHHHHcC-CeEEEEEecCC---CCCchHHHHHHHHhcCCCEEEE
Confidence 99999988764 3345667777777764 45555555543 24568888888875 4555444
No 45
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=99.50 E-value=5.7e-13 Score=107.45 Aligned_cols=98 Identities=7% Similarity=0.038 Sum_probs=75.5
Q ss_pred ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCC--------CCC--CcccCCeeEEeeCChhhHHHHHHHHHH
Q psy8570 10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVA--------NFE--LKFEYPTLTRMMGSFSLVGQAVQSILK 79 (159)
Q Consensus 10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~--------~l~--~~~~~~~~~r~~p~~~~~~~a~~~ll~ 79 (159)
++.++|.|||||.++..+..++.+|...+||+|++.+... .+. ....|. +++.|+. .+..++.++++
T Consensus 58 Li~~gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~~~~~~~~~~~~~~~~~~~~~~~~~--f~~rp~~-~~~~ai~~lv~ 134 (363)
T cd06381 58 LMNQGILALVTSTGCASAIALQSLTDAMHIPHLFIQRGYGGSPRTACGLNPSPRGQQYT--LALRPPV-RLNDVMLRLVT 134 (363)
T ss_pred HHhcCcEEEEecCChhHHHHHHHHhhCCCCCEEEeecCcCCCcccccccCCCcccceeE--EEEeccH-HHHHHHHHHHH
Confidence 4556999999999999999999999999999998654221 111 123354 4555764 68999999999
Q ss_pred HcCCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 80 NFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 80 ~f~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
+|+|++++++|++++ +...++++.+.++..+
T Consensus 135 ~~~wkkvavly~~d~---------g~~~l~~~~~~~~~~g 165 (363)
T cd06381 135 EWRWQKFVYFYDNDY---------DIRGLQEFLDQLSRQG 165 (363)
T ss_pred hCCCeEEEEEEECCc---------hHHHHHHHHHHHHhcC
Confidence 999999999999764 4556778888777764
No 46
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=99.45 E-value=5e-13 Score=106.57 Aligned_cols=134 Identities=11% Similarity=0.143 Sum_probs=104.7
Q ss_pred ccce-eeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC------
Q psy8570 10 GFVV-CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN------ 82 (159)
Q Consensus 10 ~~~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~------ 82 (159)
...+ ++.+|+||.++..+..++.++...++|+|++++.++.+.. ..+++++|+.|++..+..+++.++.+++
T Consensus 65 li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~-~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~~~~ 143 (347)
T cd06340 65 LITEEGVVALVGAYQSAVTLAASQVAERYGVPFVVDGAVSDSITE-RGFKYTFRITPHDGMFTRDMFDFLKDLNEKTGKP 143 (347)
T ss_pred HhccCCceEEecccchHhHHHHHHHHHHhCCCEEeccccchHHhh-cCCceEEecCCChHHHHHHHHHHHHHhhHhcCCC
Confidence 3444 8999999999999999999999999999998877766653 3578999999999999999999999885
Q ss_pred CcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 83 WTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 83 W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
|+++++++.++.+ +....+.+.+.+++.+ ..++....++. ...++...++++++ .+++|++.
T Consensus 144 ~~~v~~l~~~~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~i~~l~~~~~d~v~~~ 206 (347)
T cd06340 144 LKTVALVHEDTEF--------GTSVAEAIKKFAKERG-FEIVEDISYPA---NARDLTSEVLKLKAANPDAILPA 206 (347)
T ss_pred CceEEEEecCchH--------hHHHHHHHHHHHHHcC-CEEEEeeccCC---CCcchHHHHHHHHhcCCCEEEEc
Confidence 4899999987754 4456777777888775 45555555543 24578888888875 56766554
No 47
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=99.44 E-value=2.5e-12 Score=101.19 Aligned_cols=133 Identities=14% Similarity=0.087 Sum_probs=99.9
Q ss_pred ccce-eeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHH-HHcCCcEEE
Q psy8570 10 GFVV-CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSIL-KNFNWTVAG 87 (159)
Q Consensus 10 ~~~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll-~~f~W~~v~ 87 (159)
...+ ++.+|+||.++..+..++.++..++||+|++++..+.+.++. ++++|+.|++..++.++++.+ ++++|++++
T Consensus 62 li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~i~~~~~~~~~~~~~--~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~ 139 (334)
T cd06347 62 LIDQDKVVAIIGPVTSGATLAAGPIAEDAKVPMITPSATNPKVTQGK--DYVFRVCFIDPFQGTVMAKFATENLKAKKAA 139 (334)
T ss_pred HhcccCeEEEEcCCccHhHHHhHHHHHHCCCeEEcCCCCCCCcccCC--CeEEEeeCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 3444 999999999999999999999999999999988766665543 368999999888899888876 678999999
Q ss_pred EEEEeC-CCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 88 FMFNNY-GQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 88 ~i~~~~-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+|+.++ ++ +....+.+.+.+++.+ ++++....+.. ...++...++++++ .+++|++.
T Consensus 140 ii~~~~~~~--------~~~~~~~~~~~~~~~g-~~v~~~~~~~~---~~~d~~~~~~~~~~~~~d~i~~~ 198 (334)
T cd06347 140 VLYDNSSDY--------SKGLAKAFKEAFKKLG-GEIVAEETFNA---GDTDFSAQLTKIKAKNPDVIFLP 198 (334)
T ss_pred EEEeCCCch--------hHHHHHHHHHHHHHcC-CEEEEEEEecC---CCCcHHHHHHHHHhcCCCEEEEc
Confidence 999875 32 4445677777777764 45554445543 23467777777764 56666554
No 48
>KOG1055|consensus
Probab=99.40 E-value=1.4e-13 Score=116.93 Aligned_cols=128 Identities=20% Similarity=0.284 Sum_probs=106.0
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEeC
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNY 93 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~~ 93 (159)
....++|. |+..+..+|.-+..||.-+.+|+++++.++|++.||+|+|+.|+........+.++++|+|++++.+++..
T Consensus 113 ~k~mll~G-Cs~v~~~iaea~~~w~l~~lsy~~ssp~ls~r~rfp~~frt~PS~~~~np~rl~l~~~~~w~rvgt~~q~e 191 (865)
T KOG1055|consen 113 NKLMLLGG-CSSVTTLIAEAAKMWNLIVLSYGASSPALSNRKRFPTFFRTHPSANAHNPTRIKLLKKFGWKRVATLQQTE 191 (865)
T ss_pred chheeccC-CCCcchHHHhhccccceeeecccCCCccccchhhcchhhhcCCccccCCcceeeechhcCcceeeeeeeeh
Confidence 34577787 99999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHh-cCceEEEeee
Q psy8570 94 GQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAIT-KRARIIKSLD 157 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~-~~aRIii~~~ 157 (159)
+. .....+.|...+...+ +.++....|.. ++ ...++.++ +++|||+.+.
T Consensus 192 ~~--------f~~~~~dl~~~~~~~~-ieiv~~qsf~~---dp---~~~vk~l~~~D~RiI~g~f 241 (865)
T KOG1055|consen 192 EV--------FSSTLNDLEARLKEAG-IEIVFRQSFSS---DP---ADSVKNLKRQDARIIVGLF 241 (865)
T ss_pred hh--------hcchHHHHHHhhhccc-cEEEEeecccc---CH---HHHHhhccccchhheeccc
Confidence 64 4557788888777764 45555666643 23 34556665 5789998753
No 49
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=99.32 E-value=3.3e-11 Score=96.35 Aligned_cols=132 Identities=11% Similarity=0.043 Sum_probs=102.9
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHH-HHHcCCcEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSI-LKNFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~l-l~~f~W~~v~~i~ 90 (159)
.+++.+++||.++..+..++.++...++|+|+..+....+.++..+++++|+.|++..+..++++. +++++|+++++|+
T Consensus 72 ~~~v~avvG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~ii~ 151 (362)
T cd06343 72 SDEVFAMVGGLGTPTNLAVQKYLNEKKVPQLFPASGASKWNDPKPFPWTFGWQPSYQDEARIYAKYLVEEKPNAKIAVLY 151 (362)
T ss_pred hcCeEEEEecCCcHHHHHhHHHHHhcCCceEecccccHhhhCCCCCCceEecCCChHHHHHHHHHHHHHhCCCceEEEEE
Confidence 368999999999999999999999999999998766666666667889999999999999999994 6689999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
.++.+ +....+.+.+.+++.+ +.++....+.. ...++...+.+++. ...+|++
T Consensus 152 ~~~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~v~~i~~~~~d~v~~ 205 (362)
T cd06343 152 QNDDF--------GKDYLKGLKDGLGDAG-LEIVAETSYEV---TEPDFDSQVAKLKAAGADVVVL 205 (362)
T ss_pred eccHH--------HHHHHHHHHHHHHHcC-CeEEEEeeecC---CCccHHHHHHHHHhcCCCEEEE
Confidence 87754 4456777888887765 45555555543 34567777777764 4555544
No 50
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=99.31 E-value=3e-11 Score=95.93 Aligned_cols=133 Identities=11% Similarity=0.013 Sum_probs=100.2
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC--CcEEEEEE
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN--WTVAGFMF 90 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~--W~~v~~i~ 90 (159)
+++.+|+||.++..+..++.++...++|+|++.+.++.+.++..+++++|+.|++..+..+++++++.++ |+++++++
T Consensus 66 ~~v~aiig~~~s~~~~~~~~~~~~~~ip~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 145 (346)
T cd06330 66 EGVDMLIGLISSGVALAVAPVAEELKVFFIATDPGTPRLTEEPDNPYVFRTRNSTIMDAVAGALYAAKLDKKAKTWATIN 145 (346)
T ss_pred cCCcEEEcccchHHHHHHHHHHHHcCCeEEEcCCCCcccccCCCCCceEEecCChHHHHHHHHHHHHHhCcCccEEEEEC
Confidence 4899999999999999999999999999999887777666655789999999999999999999999885 99999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCC-CCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPS-GSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
.++.+ +....+.+.+.+++.+ ++.++....++ ....++...+.+++. ..++|++.
T Consensus 146 ~~~~~--------g~~~~~~~~~~~~~~g~~~~~v~~~~~~---~~~~d~~~~v~~i~~~~~d~ii~~ 202 (346)
T cd06330 146 PDYAY--------GQDAWADFKAALKRLRPDVEVVSEQWPK---LGAPDYGSEITALLAAKPDAIFSS 202 (346)
T ss_pred CchHH--------HHHHHHHHHHHHHHhCCCCeecccccCC---CCCcccHHHHHHHHhcCCCEEEEe
Confidence 77643 4456677877777653 11222211111 134567777777764 56665543
No 51
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=99.31 E-value=8.1e-11 Score=93.86 Aligned_cols=131 Identities=14% Similarity=0.067 Sum_probs=100.5
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCc-ccCCeeEEeeCChhhHHHHHHHHH-HHcCCcEEEEEE
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAVQSIL-KNFNWTVAGFMF 90 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~-~~~~~~~r~~p~~~~~~~a~~~ll-~~f~W~~v~~i~ 90 (159)
++|.+++||.++..+..++.++...++|+|++.+....+.+. ..+++++|+.|++..++.+++..+ +..+|++|+++|
T Consensus 66 ~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~~Fr~~~~~~~~~~~~a~~~~~~~~~~~v~ii~ 145 (347)
T cd06335 66 EKVVAVLGGLHTPVALANLEFIQQNKIPLIGPWAAGTPITRNGAPPNYIFRVSADDSIQAPFLVDEAVKRGGFKKVALLL 145 (347)
T ss_pred CCeEEEEcCCCCHHHHhhhHHHHhcCCcEEecCCCCcccccCCCCCCCEEEeccChHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 489999999999999889999999999999987766555442 356789999999999999999876 567799999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
.++.+ +....+.+.+.+++.+ +.++....++. ...++...++++++ ...+|++
T Consensus 146 ~~~~~--------g~~~~~~~~~~~~~~G-~~v~~~~~~~~---~~~d~s~~i~~i~~~~~d~v~~ 199 (347)
T cd06335 146 DNTGW--------GRSNRKDLTAALAARG-LKPVAVEWFNW---GDKDMTAQLLRAKAAGADAIII 199 (347)
T ss_pred ccCch--------hhhHHHHHHHHHHHcC-CeeEEEeeecC---CCccHHHHHHHHHhCCCCEEEE
Confidence 98764 4456777888888775 45554455543 34578888888875 4555544
No 52
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=99.26 E-value=4.1e-11 Score=95.34 Aligned_cols=133 Identities=9% Similarity=-0.043 Sum_probs=99.7
Q ss_pred cceeeEEEECCCCchhHHHH-------HHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC-
Q psy8570 11 FVVCVDAFLGPVCDYVIAPV-------ARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN- 82 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~v-------a~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~- 82 (159)
..+++.+++||.++..+..+ +.++..+++|+|++++..+.+.+....++++|+.|++..++.++++.+...+
T Consensus 63 v~~~v~aiiG~~~s~~~~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~ 142 (342)
T cd06329 63 IDDGVRLVVQGNSSSVALALTEAVRKHNQRNPGKEVLYLNYASVAPALTGEKCSFWHFRTDANTDMKMEALASYIKKQPD 142 (342)
T ss_pred HHhCCeEEEcccchHHHHHhhhhhhhhhhhhccCCeEEEecCCCCchhhhccCcceEEEecCChHHHHHHHHHHHHhccc
Confidence 44589999999999988888 7788889999999887766666644578899999999999999999998876
Q ss_pred CcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcC--CCCCCcceeeeeeccCCCh-HHHHHHHHHHhc-CceEEEe
Q psy8570 83 WTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITS--PSGSNDMKLESFDEETVTP-EKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 83 W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~~~~~~~~~~f~~~~~~~-~~~~~~L~~~~~-~aRIii~ 155 (159)
|+++++++.++.+ +....+.+.+.+++ .+ ..++....++. .. .++..++.+++. ...+|++
T Consensus 143 ~k~v~i~~~~~~~--------g~~~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~~d~~~~i~~l~~~~~d~v~~ 207 (342)
T cd06329 143 GKKVYLINQDYSW--------GQDVAAAFKAMLAAKRPD-IQIVGEDLHPL---GKVKDFSPYVAKIKASGADTVIT 207 (342)
T ss_pred CceEEEEeCChHH--------HHHHHHHHHHHHHhhcCC-cEEeceeccCC---CCCCchHHHHHHHHHcCCCEEEE
Confidence 9999999987654 44567778888876 54 33433333332 23 567777777765 3444443
No 53
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=99.26 E-value=8.3e-11 Score=93.81 Aligned_cols=130 Identities=13% Similarity=0.059 Sum_probs=101.7
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
+++.+++||.++..+.. +.++...++|+|++++.++.+.. ..+++++|+.|+...+..+++.+++..+|+++++++.+
T Consensus 70 ~~v~~iiG~~~s~~~~~-~~~~~~~~ip~i~~~~~~~~~~~-~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~v~il~~d 147 (347)
T cd06336 70 DGVKFILGPIGGGITAA-QQITERNKVLLLTAYSSDLSIDT-AGNPLTFRVPPIYNVYGVPFLAYAKKPGGKKVALLGPN 147 (347)
T ss_pred cCceEEEeCCCCchhhh-hhhhhhcCceEEeccCCcccccc-cCCceEEEecCCchhHHHHHHHHHhhcCCceEEEEccC
Confidence 38999999999988877 89999999999998887776653 34688999999999999999999988999999999987
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+.+ +....+.+.+.+++.+ ..++....++. ...|+...+.++++ .+++|+++
T Consensus 148 ~~~--------g~~~~~~~~~~l~~~G-~~vv~~~~~~~---~~~D~s~~i~~i~~~~~d~v~~~ 200 (347)
T cd06336 148 DAY--------GQPWVAAYKAAWEAAG-GKVVSEEPYDP---GTTDFSPIVTKLLAEKPDVIFLG 200 (347)
T ss_pred Cch--------hHHHHHHHHHHHHHcC-CEEeeecccCC---CCcchHHHHHHHHhcCCCEEEEc
Confidence 754 4556777778887765 34444444433 34678888888874 56776543
No 54
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=99.25 E-value=1.8e-10 Score=91.43 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=94.7
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhH-HHHHHHHHHHc-CCcEEEEEE
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLV-GQAVQSILKNF-NWTVAGFMF 90 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~-~~a~~~ll~~f-~W~~v~~i~ 90 (159)
+++.+|+||.++..+..+..++...++|+|++++....+.. .+++++|+.+++..+ ..++..+++++ +|++++++|
T Consensus 66 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~--~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 143 (344)
T cd06348 66 DRVLAIIGPTLSQQAFAADPIAERAGVPVVGPSNTAKGIPE--IGPYVFRVSAPEAVVAPAAIAAALKLNPGIKRVAVFY 143 (344)
T ss_pred cCceEEECCCCcHHHHhhhHHHHhCCCCEEeccCCCCCcCC--CCCeEEEccCcHHHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 48999999999998888889999999999998776554432 467889998766554 45556778888 999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
.+++. .+....+.+.+.+++.+ +.++....+.. +..++...+.++++ .+++|++
T Consensus 144 ~~~~~-------~g~~~~~~~~~~~~~~g-~~v~~~~~~~~---~~~d~~~~v~~i~~~~~d~vi~ 198 (344)
T cd06348 144 AQDDA-------FSVSETEIFQKALRDQG-LNLVTVQTFQT---GDTDFQAQITAVLNSKPDLIVI 198 (344)
T ss_pred eCCch-------HHHHHHHHHHHHHHHcC-CEEEEEEeeCC---CCCCHHHHHHHHHhcCCCEEEE
Confidence 86541 14556778888888765 35544445543 34578888888875 4555544
No 55
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=99.25 E-value=1.2e-10 Score=92.31 Aligned_cols=133 Identities=11% Similarity=-0.007 Sum_probs=103.8
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
+++.+++||.++..+..++.++...++|+|++++..+.+.+...+|+++|+.|++..++.++++.+..-+|+++++++.+
T Consensus 65 ~~V~aviG~~~s~~~~a~~~~~~~~~vp~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 144 (334)
T cd06327 65 DGVDMIVGGPNSAVALAVQEVAREKKKIYIVTGAGSDDLTGKDCSPYTFHWAYDTYMLANGTAPALVKAGGKKWFFLTAD 144 (334)
T ss_pred cCceEEECCccHHHHHHHHHHHHHhCceEEecCCCccccccCCCCCceEEccCChHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 48999999999999999999999999999998887777776555789999999999999999987665568999999987
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEeee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSLD 157 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~~ 157 (159)
+.+ +....+.+.+.+++.+ ..++....+.. ...++...+++++. ..++|++..
T Consensus 145 ~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~v~~l~~~~~d~v~~~~ 198 (334)
T cd06327 145 YAF--------GHSLERDARKVVKANG-GKVVGSVRHPL---GTSDFSSYLLQAQASGADVLVLAN 198 (334)
T ss_pred hHH--------hHHHHHHHHHHHHhcC-CEEcCcccCCC---CCccHHHHHHHHHhCCCCEEEEec
Confidence 654 4456778888888775 34444444433 34578888888775 567776653
No 56
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=99.24 E-value=1.6e-10 Score=91.46 Aligned_cols=130 Identities=8% Similarity=0.020 Sum_probs=93.3
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC-CcEEEEEEE
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN-WTVAGFMFN 91 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~-W~~v~~i~~ 91 (159)
.++.+++||.+|..+..++.++...++|+|++++.++.+.+ .+++++|+.|++..+..++++.++..+ |+++++|+.
T Consensus 65 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~a~~~~lt~--~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 142 (332)
T cd06344 65 PEILGVVGHYSSDATLAALDIYQKAKLVLISPTSTSVKLSN--PGPYFFRTVPSNAVAARALAKYLKKKNKIKKVAIFYN 142 (332)
T ss_pred cCceEEEcCCCcHHHHHHHHHHhhcCceEEccCcCchhhcC--CCCcEEEeCCCcHHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 48999999999999988999999999999998776666653 478999999999999999999999886 999999998
Q ss_pred eCC-CcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 92 NYG-QTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 92 ~~~-~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
++. + +....+.+.+.+++..+..++....+.. ...++...+.++++ .+.+|++
T Consensus 143 ~~~~~--------g~~~~~~~~~~~~~~~g~~v~~~~~~~~---~~~~~~~~v~~i~~~~~d~v~~ 197 (332)
T cd06344 143 STSPY--------SQSLKQEFTSALLERGGGIVVTPCDLSS---PDFNANTAVSQAINNGATVLVL 197 (332)
T ss_pred CCchH--------hHHHHHHHHHHHHHhcCCeeeeeccCCC---CCCCHHHHHHHHHhcCCCEEEE
Confidence 764 3 3344556666666621223322222221 12345556666654 4555544
No 57
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=99.23 E-value=1.6e-10 Score=88.42 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=98.0
Q ss_pred ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC-CcEEEE
Q psy8570 10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN-WTVAGF 88 (159)
Q Consensus 10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~-W~~v~~ 88 (159)
...+++.+++||.++..+..++..+..++||+|++.+....+.+ ..+++++++.|+......++++.++..+ |+++++
T Consensus 62 l~~~~v~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 140 (298)
T cd06268 62 LVDDGVDAVIGPLSSGVALAAAPVAEEAGVPLISPGATSPALTG-KGNPYVFRTAPSDAQQAAALADYLAEKGKVKKVAI 140 (298)
T ss_pred HHhCCceEEEcCCcchhHHhhHHHHHhCCCcEEccCCCCccccc-CCCceEEEcccCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 34568999999999988888999999999999998877655544 3578999999999999999999999988 999999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
++.++.. +....+.+.+.+++.+ +.++....+.. +..++.+.+++++. ..++|++.
T Consensus 141 v~~~~~~--------~~~~~~~~~~~~~~~g-~~i~~~~~~~~---~~~~~~~~~~~l~~~~~~~vi~~ 197 (298)
T cd06268 141 IYDDYAY--------GRGLAAAFREALKKLG-GEVVAEETYPP---GATDFSPLIAKLKAAGPDAVFLA 197 (298)
T ss_pred EEcCCch--------hHHHHHHHHHHHHHcC-CEEEEEeccCC---CCccHHHHHHHHHhcCCCEEEEc
Confidence 9987643 3445677777777764 23333222222 22456667766664 34555443
No 58
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=99.19 E-value=5.5e-10 Score=88.11 Aligned_cols=131 Identities=11% Similarity=0.049 Sum_probs=100.1
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
++++.+|+||.++..+..++..+...++|+|+.++..+.+++...+|+++|+.|++......+++.+...+|+++++++.
T Consensus 63 ~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~v~~l~~ 142 (336)
T cd06360 63 QDKVDVVVGPVHSGEALAMVKVLREPGTPLINPNAGADDLTGRLCAPNFFRTSFSNAQWAAPMGKYAADDGYKKVVTVAW 142 (336)
T ss_pred HhCCcEEEccCccHhHHHHHHHHHhcCceEEecCCCCccccccCCCCcEEEEeCchHHHHHHHHHHHHHcCCCeEEEEec
Confidence 35899999999988887888889999999999888777777665678899999999999999999999889999999997
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC-ceEEE
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR-ARIIK 154 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~-aRIii 154 (159)
++.+ +....+.+.+.+++.+ ..++....++. ...++..++.++++. ..+|+
T Consensus 143 ~~~~--------g~~~~~~~~~~~~~~G-~~v~~~~~~~~---~~~d~~~~v~~~~~~~pd~v~ 194 (336)
T cd06360 143 DYAF--------GYEVVEGFKEAFTEAG-GKIVKELWVPF---GTSDFASYLAQIPDDVPDAVF 194 (336)
T ss_pred cchh--------hHHHHHHHHHHHHHcC-CEEEEEEecCC---CCcchHHHHHHHHhcCCCEEE
Confidence 6543 4445677778887765 33333333332 346788888888753 34444
No 59
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=99.18 E-value=8.4e-10 Score=87.53 Aligned_cols=131 Identities=11% Similarity=0.045 Sum_probs=98.4
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHH-HHcCCcEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSIL-KNFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll-~~f~W~~v~~i~ 90 (159)
.++|.+++||.+|..+..++.++...++|+|++++..+.+.+. .++++|+.|+......++++.+ +.++|+++++++
T Consensus 65 ~~~V~~i~G~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~ii~ 142 (340)
T cd06349 65 DPRIVAVLGDFSSGVSMAASPIYQRAGLVQLSPTNSHPDFTKG--GDFIFRNSTSQAIEAPLLADYAVKDLGFKKVAILS 142 (340)
T ss_pred cCCeEEEECCCccHhHHHhHHHHHhCCCeEEecCCCCCccccC--CCeEEEccCCcHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 4579999999999999999999999999999988766655543 4678999999888888888875 678999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
.++++ .....+.+.+.+++.+ ..++....+.. ...++...+.+++. .+++|++.
T Consensus 143 ~~~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~---~~~d~~~~v~~l~~~~~d~v~~~ 197 (340)
T cd06349 143 VNTDW--------GRTSADIFVKAAEKLG-GQVVAHEEYVP---GEKDFRPTITRLRDANPDAIILI 197 (340)
T ss_pred cCChH--------hHHHHHHHHHHHHHcC-CEEEEEEEeCC---CCCcHHHHHHHHHhcCCCEEEEc
Confidence 88764 3345667777777764 34443344433 24568888887764 56666543
No 60
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=99.14 E-value=7.9e-10 Score=89.20 Aligned_cols=132 Identities=13% Similarity=0.119 Sum_probs=101.0
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHH-HHHcCCcEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSI-LKNFNWTVAGFM 89 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~l-l~~f~W~~v~~i 89 (159)
..+++.+++||.++..+..++.++...++|+|++++.++.+.+ ..+++++|+.+.+..++.++++. .+.++|+++++|
T Consensus 89 i~~~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~s~~~~l~~-~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~k~va~i 167 (369)
T PRK15404 89 VNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTA-RGYQLIFRTIGLDSDQGPTAAKYILEKVKPKRIAVL 167 (369)
T ss_pred HhCCceEEEcCCCchhHHHhHHHHHHCCCeEEecCCCCHHHhc-CCCceEEeCCCCcHHHHHHHHHHHHHhcCCCEEEEE
Confidence 3568999999999998989999999999999998887777765 35788999999998888888884 466899999999
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
+.++.+ +....+.+.+.+++.+ ..++....++. ...|+...+.+++. .+++|++
T Consensus 168 ~~d~~~--------g~~~~~~~~~~~~~~G-~~v~~~~~~~~---g~~D~~~~v~~l~~~~~d~v~~ 222 (369)
T PRK15404 168 HDKQQY--------GEGLARSVKDGLKKAG-ANVVFFEGITA---GDKDFSALIAKLKKENVDFVYY 222 (369)
T ss_pred eCCCch--------hHHHHHHHHHHHHHcC-CEEEEEEeeCC---CCCchHHHHHHHHhcCCCEEEE
Confidence 988754 3345677777777775 34444444543 34567777777764 5676654
No 61
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=99.12 E-value=1.7e-09 Score=85.73 Aligned_cols=129 Identities=12% Similarity=0.014 Sum_probs=95.7
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
+++.+++||.++..+..++.++...++|+|+.++....+.++..+++++|+.|++..+..+++.++...+|+++++++.+
T Consensus 64 ~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~~~vail~~~ 143 (333)
T cd06359 64 DKVDFVTGVVFSNVLLAVVPPVLESGTFYISTNAGPSQLAGKQCSPYFFSTSWQNDQVHEAMGKYAQDKGYKRVFLIAPN 143 (333)
T ss_pred cCCcEEEccCCcHHHHHHHHHHHHcCCeEEecCCCccccccccCCCcEEEeeCChHhhHHHHHHHHHHhCCCeEEEEecC
Confidence 48999999999999999999999999999998765555655555789999999999999999999998999999999987
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+.+ +...++.+.+.+.. .++....++ ....|+...+.+++. ...+|++.
T Consensus 144 ~~~--------g~~~~~~~~~~~~~----~v~~~~~~~---~~~~d~~~~i~~l~~~~pd~v~~~ 193 (333)
T cd06359 144 YQA--------GKDALAGFKRTFKG----EVVGEVYTK---LGQLDFSAELAQIRAAKPDAVFVF 193 (333)
T ss_pred chh--------hHHHHHHHHHHhCc----eeeeeecCC---CCCcchHHHHHHHHhCCCCEEEEE
Confidence 754 33345666555532 122222222 133578777777775 56766553
No 62
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=99.09 E-value=3e-09 Score=83.66 Aligned_cols=129 Identities=13% Similarity=0.082 Sum_probs=94.2
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
+++.+||||.++..+..+...+...++|+|+.++....+.++..+|+++|+.|++..+...+++.+...+|+++++++.+
T Consensus 64 ~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~v~il~~~ 143 (333)
T cd06332 64 DKVDVVVGPVFSNVALAVVPSLTESGTFLISPNAGPSDLAGKLCSPNFFRTSWQNDQVHEAMGKYAADKGYKKVVIIAPD 143 (333)
T ss_pred cCCcEEEcCCccHHHHHHHHHHhhcCCeEEecCCCCccccccCCCCcEEEeeCChHHhHHHHHHHHHHhCCceEEEEecC
Confidence 38999999999888878888888899999998877666666555789999999999999999999999999999999876
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+.+ +....+.+.+.++ + ..+....+.. ...++...++++++ ...+|++.
T Consensus 144 ~~~--------~~~~~~~~~~~~~--~--~~~~~~~~~~---~~~d~~~~i~~l~~~~~d~i~~~ 193 (333)
T cd06332 144 YAA--------GKDAVAGFKRTFK--G--EVVEEVYTPL---GQLDFSAELAQIRAAKPDAVFVF 193 (333)
T ss_pred cch--------hHHHHHHHHHhhc--E--EEeeEEecCC---CCcchHHHHHHHHhcCCCEEEEe
Confidence 542 3345566666665 2 1222222222 23457667777764 45666554
No 63
>KOG4440|consensus
Probab=99.07 E-value=2.8e-10 Score=95.13 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=96.9
Q ss_pred eccceeeEEEE--CCCCch---hHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCC
Q psy8570 9 TGFVVCVDAFL--GPVCDY---VIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNW 83 (159)
Q Consensus 9 ~~~~~~v~aii--Gp~~s~---~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W 83 (159)
+.+.+.+.|++ .|..|. .-.++.--++.|.||++.-...+..++||..+++|+|+.|+..+++...+.+|.+|.|
T Consensus 90 ~li~~~vyav~vSh~~Ts~d~f~p~~vSYT~gFY~iPV~G~~~Rda~fSdKnIh~sFlRtvpPyshqa~VwleMl~~~~y 169 (993)
T KOG4440|consen 90 DLISSQVYAVLVSHPPTSNDHFTPTPVSYTAGFYRIPVLGLTTRDAIFSDKNIHLSFLRTVPPYSHQASVWLEMLRVYSY 169 (993)
T ss_pred HHHhhheeEEEecCCCCCCcccccccceeeccceeeeeeeeeehhhhhccCceeeeEeecCCCccchhHHHHHHHHHhhc
Confidence 34455665555 233332 2234556778999999999888999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 84 TVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 84 ~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
++|.++.++|.. +-.....++...++.. ......+.|+. ..+++.+.|.++|+ .+||||.-
T Consensus 170 ~~vi~l~s~d~~--------gra~~~r~qt~~e~~~-~~~e~v~~f~p---~~~~~t~~l~~~k~~~~rv~~~~ 231 (993)
T KOG4440|consen 170 NHVILLVSDDHE--------GRAAQKRLQTLLEERE-SKAEKVLQFDP---GTKNVTALLMEAKELEARVIILS 231 (993)
T ss_pred ceEEEEEccccc--------chhHHhHHHHHHHHHh-hhhhhheecCc---ccchHHHHHhhhhhhhheeEEee
Confidence 999999887753 2222233333333322 12334567765 34678889999986 78998753
No 64
>KOG1054|consensus
Probab=99.05 E-value=1.2e-09 Score=91.08 Aligned_cols=132 Identities=8% Similarity=0.169 Sum_probs=107.4
Q ss_pred eeeccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEE
Q psy8570 7 YRTGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVA 86 (159)
Q Consensus 7 ~~~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v 86 (159)
|-+++++|+.|++|-........+..+|+.+++|.|+++.+.. ..-++.+++.|+ +..++++++.||+|..+
T Consensus 83 fCsq~s~Gv~Aifg~yd~ks~~~ltsfc~aLh~~~vtpsfp~~-----~~~~Fviq~RP~---l~~al~s~i~hy~W~~f 154 (897)
T KOG1054|consen 83 FCSQFSRGVYAIFGFYDKKSVNTLTSFCGALHVSFVTPSFPTD-----GDNQFVIQMRPA---LKGALLSLIDHYKWEKF 154 (897)
T ss_pred HHHHHhhhHhhheecccccchhhhhhhccceeeeeecccCCcC-----CCceEEEEeCch---HHHHHHHHHHhcccceE
Confidence 3478899999999999999999999999999999999876422 122466999998 78899999999999999
Q ss_pred EEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc--CceEEEeeeC
Q psy8570 87 GFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK--RARIIKSLDA 158 (159)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~--~aRIii~~~~ 158 (159)
.++|+.+. ++..++++.+.+..++ ..++...+... ++...|+.+++.+.. .-||+|.|.+
T Consensus 155 v~lyD~~r---------g~s~Lqai~~~a~~~n--w~VtA~~v~~~-~d~~~yr~~f~~l~~r~e~rv~iDce~ 216 (897)
T KOG1054|consen 155 VYLYDTDR---------GLSILQAIMEAAAQNN--WQVTAINVGNI-NDVKEYRMLFEMLDRRQENRVLIDCES 216 (897)
T ss_pred EEEEcccc---------hHHHHHHHHHHHHhcC--ceEEEEEcCCc-ccHHHHHHHHHHHhccccceEEEEccc
Confidence 99998763 7889999999998875 56777777653 355568888887753 4679998865
No 65
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=99.00 E-value=1.1e-08 Score=81.12 Aligned_cols=128 Identities=10% Similarity=-0.049 Sum_probs=94.9
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
++|.+++||.+|..+..+..++...++|+|+.++..+.+......++++|+.++...+...+...+..- ++++++|+.+
T Consensus 67 ~~V~avvG~~~S~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~ 145 (333)
T cd06328 67 DGVDILVGSTSSGVALAVLPVAEENKKILIVEPAAADSITGKNWNRYTFRTGRNSSQDAIAAAAALGKP-GKKIATLAQD 145 (333)
T ss_pred cCCeEEEccCCcHHHHHHHHHHHHhCCcEEecCCCCchhhccCCCCcEEEecCChHHHHHHHHHHHHhc-CCeEEEEecC
Confidence 489999999999999999999999999999987776666554445789999888777777766666554 8999999998
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEE
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARII 153 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIi 153 (159)
+.+ +....+.+.+.+++.+ ..++....+.. ...|+...+.+++. ...+|
T Consensus 146 ~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~v~~l~~~~pd~V 195 (333)
T cd06328 146 YAF--------GRDGVAAFKAALEKLG-AAIVTEEYAPT---DTTDFTPYAQRLLDALKKVL 195 (333)
T ss_pred ccc--------cHHHHHHHHHHHHhCC-CEEeeeeeCCC---CCcchHHHHHHHHhcCCCEE
Confidence 765 4445677777887765 35554444443 34568887777774 34444
No 66
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=98.98 E-value=1.8e-08 Score=79.42 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=94.8
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
+++.++||+.++..+..+..++...++|+|+.++.+..+.+ ...+.++|+.++.......+++.+...+|+++++++.+
T Consensus 67 ~~v~avig~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~~~ 145 (336)
T cd06326 67 DKVFALFGYVGTPTTAAALPLLEEAGVPLVGPFTGASSLRD-PPDRNVFNVRASYADEIAAIVRHLVTLGLKRIAVFYQD 145 (336)
T ss_pred cCcEEEEeCCCchhHHHHHHHHHHcCCeEEEecCCcHHhcC-CCCCceEEeCCChHHHHHHHHHHHHHhCCceEEEEEec
Confidence 48999999988877777778888999999998655444432 23567899999999999999999999999999999876
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+.+ +....+.+.+.+++.+ ...+....++. +..++...+.++++ ..++|++.
T Consensus 146 ~~~--------~~~~~~~~~~~~~~~G-~~~~~~~~~~~---~~~d~~~~~~~l~~~~~dav~~~ 198 (336)
T cd06326 146 DAF--------GKDGLAGVEKALAARG-LKPVATASYER---NTADVAAAVAQLAAARPQAVIMV 198 (336)
T ss_pred Ccc--------hHHHHHHHHHHHHHcC-CCeEEEEeecC---CcccHHHHHHHHHhcCCCEEEEE
Confidence 532 4556777888887765 33333334433 23466677777664 45666554
No 67
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=98.96 E-value=2.7e-08 Score=77.93 Aligned_cols=130 Identities=15% Similarity=0.085 Sum_probs=92.3
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
+++.++||+.++..+..+...+...++|+|+.+....... ...++++|+.+++...+..+++.+...+|+++++++.+
T Consensus 65 ~~v~~vig~~~s~~~~~~~~~~~~~~vP~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vail~~~ 142 (312)
T cd06333 65 DKVDAIIGPSTTPATMAVAPVAEEAKTPMISLAPAAAIVE--PKRKWVFKTPQNDRLMAEAILADMKKRGVKTVAFIGFS 142 (312)
T ss_pred CCeEEEECCCCCHHHHHHHHHHHhcCCCEEEccCCccccC--CCCCcEEEcCCCcHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 4899999999887777788888999999999876544333 23467889999999999999999999999999999876
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHh-cCceEEEee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAIT-KRARIIKSL 156 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~-~~aRIii~~ 156 (159)
+.+ +....+.+.+.+++.+ +.++....++.. ..++...+.+++ ....+|++.
T Consensus 143 ~~~--------~~~~~~~~~~~~~~~G-~~v~~~~~~~~~---~~d~~~~~~~l~~~~pdaIi~~ 195 (312)
T cd06333 143 DAY--------GESGLKELKALAPKYG-IEVVADERYGRT---DTSVTAQLLKIRAARPDAVLIW 195 (312)
T ss_pred cHH--------HHHHHHHHHHHHHHcC-CEEEEEEeeCCC---CcCHHHHHHHHHhCCCCEEEEe
Confidence 532 3345667777777764 344333444331 234555555554 346666654
No 68
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=98.93 E-value=3.1e-08 Score=78.89 Aligned_cols=121 Identities=14% Similarity=0.093 Sum_probs=92.2
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
.+++.+++||.++..+..++.++...++|+|+.+...... . .+.++|+.+++..++.+++..+...+|+++++++.
T Consensus 57 ~~~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~-~---~~~~f~~~~~~~~~~~~~~~~~~~~g~k~vaii~~ 132 (336)
T cd06339 57 AEGADIIVGPLLKENVAALAAAAAELGVPVLALNNDESVA-A---GPNLFYFGLSPEDEARRAAEYARSQGKRRPLVLAP 132 (336)
T ss_pred HcCCCEEEccCCHHHHHHHHhhhccCCCCEEEccCCcccc-C---CCCEEEecCChHHHHHHHHHHHHhcCccceEEEec
Confidence 4589999999999888888889999999999876443322 1 46789999999999999998888789999999997
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK 148 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~ 148 (159)
++.+ +....+.+.+.+++.+ ..++....++. ...++...+.+++.
T Consensus 133 ~~~~--------g~~~~~~f~~~~~~~G-~~vv~~~~~~~---~~~d~~~~i~~i~~ 177 (336)
T cd06339 133 DGAY--------GQRVADAFRQAWQQLG-GTVVAIESYDP---SPTDLSDAIRRLLG 177 (336)
T ss_pred CChH--------HHHHHHHHHHHHHHcC-CceeeeEecCC---CHHHHHHHHHHHhc
Confidence 6543 4456677777787765 34554555543 45688888888875
No 69
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=98.90 E-value=4.8e-08 Score=72.87 Aligned_cols=134 Identities=16% Similarity=0.242 Sum_probs=94.5
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
...++++++|+.++.....+...+..+++|+|+.++...... .++.+.++.++....+..+++++.+.+|+++++++
T Consensus 55 ~~~~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~ 131 (269)
T cd01391 55 IQQGVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATAPDLT---GYPYVFRVGPDNEQAGEAAAEYLAEKGWKRVALIY 131 (269)
T ss_pred HHcCCCEEEecCCCHHHHHHHHHHHHcCCcEEEecCCCCccC---CCceEEEEcCCcHHHHHHHHHHHHHhCCceEEEEe
Confidence 345799999999987776678888999999999887655443 46788999999999999999999999999999998
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC--ceEEEeee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR--ARIIKSLD 157 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~--aRIii~~~ 157 (159)
.+.. .......+++.+.+++.+ ........... .....+..+.+.+++. .++|+++.
T Consensus 132 ~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~i~~~~ 190 (269)
T cd01391 132 GDDG-------AYGRERLEGFKAALKKAG-IEVVAIEYGDL--DTEKGFQALLQLLKAAPKPDAIFACN 190 (269)
T ss_pred cCCc-------chhhHHHHHHHHHHHhcC-cEEEeccccCC--CccccHHHHHHHHhcCCCCCEEEEcC
Confidence 7652 123455677777777653 12211111111 1124566666666653 67777664
No 70
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=98.88 E-value=3.9e-08 Score=77.82 Aligned_cols=127 Identities=9% Similarity=-0.120 Sum_probs=91.1
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
++|.+|+||.++..+..++.++...++|+|+...... ....++++|+.|+...+..++++.+..-+|+++++++.+
T Consensus 66 ~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~il~~d 141 (333)
T cd06331 66 DKVDAVFGCYTSASRKAVLPVVERGRGLLFYPTQYEG----GECSPNVFYTGATPNQQLLPLIPYLMEKYGKRFYLIGSD 141 (333)
T ss_pred cCCcEEEecccHHHHHHHHHHHHhcCceEEeCCCCCC----CcCCCCeEEccCChHHhHHHHHHHHHHhcCCeEEEECCC
Confidence 4899999999999999999999999999998654222 123467899999998888888887655459999999887
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
+.+ +....+.+.+.+++.+ ..++....++. +..++..++.+++. ...+|++
T Consensus 142 ~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~v~~~~~~~~d~v~~ 193 (333)
T cd06331 142 YVW--------PRESNRIARALLEELG-GEVVGEEYLPL---GTSDFGSVIEKIKAAGPDVVLS 193 (333)
T ss_pred chh--------HHHHHHHHHHHHHHcC-CEEEEEEEecC---CcccHHHHHHHHHHcCCCEEEE
Confidence 654 3334566667777664 24444445543 34678888887764 4555443
No 71
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=98.87 E-value=6.1e-08 Score=76.77 Aligned_cols=126 Identities=14% Similarity=-0.039 Sum_probs=89.8
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHH-HHHcCCcEEEEEEE
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSI-LKNFNWTVAGFMFN 91 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~l-l~~f~W~~v~~i~~ 91 (159)
+++.+|+||.|+..+..++.++. .++|+|+..+.... ...++++|+.++...+..+.+.. .+..+|+++++++.
T Consensus 66 ~~v~aviG~~~s~~a~a~~~~~~-~~vp~i~~~~~~~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~i~~~ 140 (333)
T cd06358 66 GGVDAIIGWHTSAVRNAVAPVVA-GRVPYVYTSLYEGG----ECNPGVFLTGETPEQQLAPAIPWLAEEKGARRWYLIGN 140 (333)
T ss_pred CCCcEEEecCcHHHHHHHHHHHh-cCceEEeCCCcCCC----CCCCCEEEcCCCcHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 48999999999999998889998 99999987543221 23578899998888777655554 46689999999988
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
++.+ +....+.+...+++.+ +.++....++. +..++...+.++++ ...+|++
T Consensus 141 ~~~~--------g~~~~~~~~~~~~~~G-~~v~~~~~~~~---~~~d~~~~v~~l~~~~pd~v~~ 193 (333)
T cd06358 141 DYVW--------PRGSLAAAKRYIAELG-GEVVGEEYVPL---GTTDFTSVLERIAASGADAVLS 193 (333)
T ss_pred cchh--------hHHHHHHHHHHHHHcC-CEEeeeeeecC---ChHHHHHHHHHHHHcCCCEEEE
Confidence 7653 2334566666777764 34444445543 45678888888875 4566654
No 72
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=98.84 E-value=4e-08 Score=78.80 Aligned_cols=131 Identities=9% Similarity=-0.017 Sum_probs=96.5
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC-----CcEEE
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN-----WTVAG 87 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~-----W~~v~ 87 (159)
+++.+++ +.++..+..++.++...++|+|+.++....+.+...+++++|+.|++..+..+++..+..-+ .++++
T Consensus 66 ~~V~~i~-~~~S~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~~Fr~~~~~~~~~~~l~~~~~~~~~~~~~~~kva 144 (351)
T cd06334 66 DGAVAFQ-GWSTGITEALIPKIAADKIPLMSGSYGATLADDGAVFPYNFPVGPTYSDQARALVQYIAEQEGGKLKGKKIA 144 (351)
T ss_pred CCcEEEe-cCcHHHHHHhhHHHhhcCCcEEecccchhhccCCCCCCeeeeCCCCHHHHHHHHHHHHHHhcccCCCCCeEE
Confidence 3677765 56777787888899999999999876666665555688999999999999999999887655 58999
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+|+.++.+ +....+.+.+.+++.+ ..++....++. ...|+...+.+++. .+.+|++.
T Consensus 145 iv~~~~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~D~~~~v~~i~~~~pd~V~~~ 202 (351)
T cd06334 145 LVYHDSPF--------GKEPIEALKALAEKLG-FEVVLEPVPPP---GPNDQKAQWLQIRRSGPDYVILW 202 (351)
T ss_pred EEeCCCcc--------chhhHHHHHHHHHHcC-CeeeeeccCCC---CcccHHHHHHHHHHcCCCEEEEe
Confidence 99998765 3345666777777765 34444444433 34578888888875 56776654
No 73
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=98.83 E-value=2.5e-08 Score=80.12 Aligned_cols=111 Identities=11% Similarity=0.041 Sum_probs=90.3
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..++|.+++||.+|..+..++.++...++|+|++++.++.+..+...++++|+.|++..++.++++.+..-+.+++++|+
T Consensus 56 i~~~V~~vvG~~~S~~~~Av~~~a~~~~vp~i~~~a~~~~lt~~~c~~~~Fr~~~~~~~~~~ala~~~~~~g~kkvaii~ 135 (347)
T TIGR03863 56 LAQGVRFFVLDLPAAALLALADAAKAKGALLFNAGAPDDALRGADCRANLLHTLPSRAMLADALAQYLAAKRWRRILLIQ 135 (347)
T ss_pred HHCCCCEEEecCChHHHHHHHHHHHhCCcEEEeCCCCChHHhCCCCCCCEEEecCChHhHHHHHHHHHHHcCCCEEEEEe
Confidence 35679999999999999999999999999999998887777665556789999999999999999988766999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFD 130 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~ 130 (159)
.++.+ +....+.+.+.+++.+ ..++....++
T Consensus 136 ~~~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~ 166 (347)
T TIGR03863 136 GPLPA--------DALYADAFRRSAKRFG-AKIVAERPFT 166 (347)
T ss_pred CCCcc--------cHHHHHHHHHHHHHCC-CEEEEeEEec
Confidence 87765 3455677777777765 3455444454
No 74
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=98.82 E-value=8.7e-08 Score=77.31 Aligned_cols=132 Identities=12% Similarity=0.077 Sum_probs=100.1
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHH-HcCCcEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILK-NFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~-~f~W~~v~~i~ 90 (159)
.++|.+++||.||..+..+..++..-++|+|+++++++.+.....-+..+|+.|++..++.++++.+. .++.+++++|+
T Consensus 76 ~~~V~~vvG~~~S~~~~a~~~v~~~~~i~~i~p~st~~~~~~~~~~~~vfr~~~~~~~q~~~~~~~l~~~~~~k~v~ii~ 155 (366)
T COG0683 76 QDGVDAVVGPTTSGVALAASPVAEEAGVPLISPSATAPQLTGRGLKPNVFRTGPTDNQQAAAAADYLVKKGGKKRVAIIG 155 (366)
T ss_pred hcCceEEEEeccCcccccchhhHhhcCceEEeecCCCCcccccccccceEEecCChHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 47899999999999999999999999999999998877765544334489999999999999998886 56777999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
.++.+ +....+.+.+.++..+. ..+....+... ..++..++.+++. ...+|++
T Consensus 156 ~~~~y--------g~~~~~~~~~~l~~~G~-~~~~~~~~~~~---~~~~~~~v~~i~~~~~d~v~~ 209 (366)
T COG0683 156 DDYAY--------GEGLADAFKAALKALGG-EVVVEEVYAPG---DTDFSALVAKIKAAGPDAVLV 209 (366)
T ss_pred CCCCc--------chhHHHHHHHHHHhCCC-eEEEEEeeCCC---CCChHHHHHHHHhcCCCEEEE
Confidence 98876 44567778888888762 32222344331 2238888888875 4555544
No 75
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=98.73 E-value=1e-07 Score=75.16 Aligned_cols=128 Identities=14% Similarity=0.143 Sum_probs=93.3
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHH-HHcCCcEEEEEEE
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSIL-KNFNWTVAGFMFN 91 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll-~~f~W~~v~~i~~ 91 (159)
+++.+++||.++..+..++..+...++|+|+.++... ....+.++|+.|+......++++.+ ++++.+++++|+.
T Consensus 68 ~~v~~vvg~~~s~~~~~~~~~~~~~~ip~i~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~iv~~ 143 (343)
T PF13458_consen 68 DGVDAVVGPLSSAQAEAVAPIAEEAGIPYISPSASSP----SPDSPNVFRLSPSDSQQAAALAEYLAKKLGAKKVAIVYP 143 (343)
T ss_dssp STESEEEESSSHHHHHHHHHHHHHHT-EEEESSGGGG----TTTHTTEEESS--HHHHHHHHHHHHHHTTTTSEEEEEEE
T ss_pred cCcEEEEecCCcHHHHHHHHHHHhcCcEEEEeeccCC----CCCCCcEEEEeccccHHHHHHHHHHHHHcCCcEEEEEec
Confidence 7899999999999999999999999999999654332 2456789999999999999999965 5689999999998
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
++.+ +....+.+.+.++..+ ..++....+.. +..++..+++++++ ...+|+++
T Consensus 144 ~~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~~~~l~~~~~d~v~~~ 197 (343)
T PF13458_consen 144 DDPY--------GRSLAEAFRKALEAAG-GKVVGEIRYPP---GDTDFSALVQQLKSAGPDVVVLA 197 (343)
T ss_dssp SSHH--------HHHHHHHHHHHHHHTT-CEEEEEEEE-T---TSSHHHHHHHHHHHTTTSEEEEE
T ss_pred Cchh--------hhHHHHHHHHHHhhcC-ceeccceeccc---ccccchHHHHHHhhcCCCEEEEe
Confidence 7643 4556677778887775 34334445543 33677778887765 45555443
No 76
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=98.71 E-value=3.9e-07 Score=72.79 Aligned_cols=129 Identities=10% Similarity=-0.114 Sum_probs=93.3
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHH-HcCCcEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILK-NFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~-~f~W~~v~~i~ 90 (159)
+++|.+|+||.+|..+..+..++...++|++++... .+....|+++|+.+.+..+...+++.+. ..+++++++++
T Consensus 65 ~~~V~~iiG~~~S~~~~a~~~~~~~~~~~~i~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~k~vaii~ 140 (348)
T cd06355 65 QDKVAAVFGCWTSASRKAVLPVFERHNGLLFYPVQY----EGLEQSPNVFYTGAAPNQQIIPAVDWLMSNKGGKRFYLVG 140 (348)
T ss_pred hCCCcEEEeccchhhHHHHHHHHhccCCceecCCCc----cCCCCCCCEEEeCCChHHhHHHHHHHHHhccCCCeEEEEC
Confidence 458999999999999888999999999999975432 1223457789999888888877777665 46899999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
.++.+ +....+.+.+.+++.+ ..++....++. ...|+...+.+++. .+.+|++.
T Consensus 141 ~d~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~D~~~~v~~l~~~~pd~v~~~ 195 (348)
T cd06355 141 SDYVY--------PRTANKILKAQLESLG-GEVVGEEYLPL---GHTDFQSIINKIKAAKPDVVVST 195 (348)
T ss_pred CcchH--------HHHHHHHHHHHHHHcC-CeEEeeEEecC---ChhhHHHHHHHHHHhCCCEEEEe
Confidence 88764 3445667777777765 34444444433 35678888888774 56666543
No 77
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=98.64 E-value=4e-07 Score=73.01 Aligned_cols=135 Identities=12% Similarity=0.122 Sum_probs=90.0
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCC--C----CCcccCCeeEEeeCChhhHHHHHHHHHHHcC-CcE
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVAN--F----ELKFEYPTLTRMMGSFSLVGQAVQSILKNFN-WTV 85 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~--l----~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~-W~~ 85 (159)
+++.+++||.+|..+..++.++...++|+|+.+++... + .....+++.+|..++...+..+++..++..+ +++
T Consensus 68 d~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~k~ 147 (357)
T cd06337 68 DKVDLLLAGGTPDTTNPVSDQCEANGVPCISTMAPWQAWFFGRGGNPATGFKWTYHFFWGAEDVVATYVGMWKQLETNKK 147 (357)
T ss_pred cCccEEEecCCcchhhHHHHHHHHhCCCeEEeccchhhhhccCCCCcccCCceeEEecCCHHHHHHHHHHHHHhCCCCce
Confidence 48999999999988888889999999999986543211 1 1112367888998888888888888888877 999
Q ss_pred EEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 86 AGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 86 v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+++++.++.++ ........++.+.+++.+ ..++....++. ...|+...+.+++. .+.+|++.
T Consensus 148 v~ii~~~~~~g-----~~~~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~D~~~~v~~ik~a~pD~v~~~ 210 (357)
T cd06337 148 VGILYPNDPDG-----NAFADPVIGLPAALADAG-YKLVDPGRFEP---GTDDFSSQINAFKREGVDIVTGF 210 (357)
T ss_pred EEEEeecCchh-----HHHHHhhhcccHHHHhCC-cEEecccccCC---CCCcHHHHHHHHHhcCCCEEEeC
Confidence 99999887652 111111222334455554 23444444443 34568888877774 56666543
No 78
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=98.56 E-value=1.7e-06 Score=68.74 Aligned_cols=127 Identities=8% Similarity=-0.039 Sum_probs=90.8
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH-cCCcEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN-FNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~-f~W~~v~~i~ 90 (159)
.++|.+++||.++..+..+..++...++|+|......... .-++++|+.+++..+..++++.+.. .+ +++++|+
T Consensus 65 ~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~----~~~~~F~~~~~~~~~~~~~~~~~~~~~~-~~vail~ 139 (334)
T cd06356 65 QDKVDVVWGGISSASREAIRPIMDRTKQLYFYTTQYEGGV----CDRNTFCTGATPAQQFSTLVPYMMEKYG-KKVYTIA 139 (334)
T ss_pred hCCCCEEEeCcchHHHHHHHHHHHhcCceEEeCCCccCCc----ccCCEEEeCCCcHHHHHHHHHHHHHccC-CeEEEEC
Confidence 4689999999999999999999999999999753322111 2357899999999889988887765 34 6799999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
.++.+ +....+.+.+.+++.+ ..++....++. ...++...+.+++. .+.+|++
T Consensus 140 ~d~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~v~~l~~~~pd~v~~ 193 (334)
T cd06356 140 ADYNF--------GQISAEWVRKIVEENG-GEVVGEEFIPL---DVSDFGSTIQKIQAAKPDFVMS 193 (334)
T ss_pred CCchh--------hHHHHHHHHHHHHHcC-CEEEeeeecCC---CchhHHHHHHHHHhcCCCEEEE
Confidence 87654 3344566667777765 34444444433 45688888888875 5666554
No 79
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=98.46 E-value=5.1e-06 Score=66.69 Aligned_cols=128 Identities=7% Similarity=-0.157 Sum_probs=90.6
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH-cCCcEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN-FNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~-f~W~~v~~i~ 90 (159)
..++.+++||.+|..+..+..++...++|++.+.... .....++++|+.+++..+..++++.+.. .+.+++++++
T Consensus 66 ~~~V~~iiG~~~S~~~~a~~~~~~~~~~~~i~~~~~~----~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~g~k~v~~l~ 141 (359)
T TIGR03407 66 QDKVAAVFGCWTSASRKAVLPVFEENNGLLFYPVQYE----GEECSPNIFYTGAAPNQQIIPAVDYLLSKKGAKRFFLLG 141 (359)
T ss_pred hCCCcEEEcCCcHHHHHHHHHHHhccCCceEeCCccc----CcccCCCEEEcCCChHHHHHHHHHHHHhccCCceEEEec
Confidence 4679999999999998888888888999998654221 1223567899999999888888876654 6999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
.++.+ +....+.+.+.+++.+ ..++....++. ...|+...+.+++. ....|++
T Consensus 142 ~d~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~D~s~~v~~l~~~~pDav~~ 195 (359)
T TIGR03407 142 SDYVF--------PRTANKIIKAYLKSLG-GTVVGEDYTPL---GHTDFQTIINKIKAFKPDVVFN 195 (359)
T ss_pred CccHH--------HHHHHHHHHHHHHHcC-CEEEeeEEecC---ChHhHHHHHHHHHHhCCCEEEE
Confidence 87653 3334555667777765 34444444432 45678888888875 4555544
No 80
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=98.38 E-value=8.3e-06 Score=66.13 Aligned_cols=127 Identities=9% Similarity=-0.079 Sum_probs=89.9
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHH-HcCCcEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILK-NFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~-~f~W~~v~~i~ 90 (159)
++++.+++||.+|..+..++.++...++|+|...... .....++++|+.|+...+..++++.+. ..++ ++++++
T Consensus 66 ~d~v~~viG~~~S~~~~A~~~~~~~~~~~~i~~~~~~----~~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~g~-~va~l~ 140 (374)
T TIGR03669 66 RDKVDALWAGYSSATREAIRPIIDRNEQLYFYTNQYE----GGVCDEYTFAVGATARQQLGTVVPYMVEEYGK-KIYTIA 140 (374)
T ss_pred hCCCCEEEcCCchHHHHHHHHHHHhcCceEEcCcccc----cccCCCCEEEcCCChHHHHHHHHHHHHHcCCC-eEEEEc
Confidence 3689999999999999999999999999999643211 111246789999999988888888775 4674 789998
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
.++.+ +....+.+.+.+++.+ ..++....++. ...++...+.+++. .+.+|++
T Consensus 141 ~d~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---g~~Df~~~l~~i~~~~pD~V~~ 194 (374)
T TIGR03669 141 ADYNF--------GQLSADWVRVIAKENG-AEVVGEEFIPL---SVSQFSSTIQNIQKADPDFVMS 194 (374)
T ss_pred CCcHH--------HHHHHHHHHHHHHHcC-CeEEeEEecCC---CcchHHHHHHHHHHcCCCEEEE
Confidence 87654 3344556666666664 34444344432 45688889988885 5666654
No 81
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=98.27 E-value=1.8e-05 Score=62.68 Aligned_cols=131 Identities=15% Similarity=0.027 Sum_probs=89.5
Q ss_pred cce-eeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570 11 FVV-CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM 89 (159)
Q Consensus 11 ~~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i 89 (159)
... ++.+++||.++.....+ ..+...++|+|+.++....... .+..+++.+++.....++++.+..-+-++++++
T Consensus 63 i~~~~V~~iig~~~s~~~~~~-~~~~~~~ip~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~i 138 (341)
T cd06341 63 VEDDKVVAVVGGSSGAGGSAL-PYLAGAGIPVIGGAGTSAWELT---SPNSFPFSGGTPASLTTWGDFAKDQGGTRAVAL 138 (341)
T ss_pred HHhcCceEEEecccccchhHH-HHHhhcCCceecCCCCCchhhc---CCCeEEecCCCcchhHHHHHHHHHcCCcEEEEE
Confidence 344 89999999988766555 7778899999988765544332 355678888888888888888888788999999
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+.++.. .+....+.+.+.+++.+ ...+....+.. +..++...+++++. ...+|++.
T Consensus 139 ~~~~~~-------~g~~~~~~~~~~~~~~G-~~v~~~~~~~~---~~~d~~~~~~~i~~~~pdaV~~~ 195 (341)
T cd06341 139 VTALSA-------AVSAAAALLARSLAAAG-VSVAGIVVITA---TAPDPTPQAQQAAAAGADAIITV 195 (341)
T ss_pred EeCCcH-------HHHHHHHHHHHHHHHcC-CccccccccCC---CCCCHHHHHHHHHhcCCCEEEEe
Confidence 876531 24456777778887765 23333333332 23467777777764 45666554
No 82
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=97.86 E-value=0.0007 Score=54.36 Aligned_cols=129 Identities=10% Similarity=-0.000 Sum_probs=83.6
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH-cCCcEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN-FNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~-f~W~~v~~i~ 90 (159)
.++|.+++||..+..+..++.++...++|++..+.... +. .-+.++++.++......++++.+.. ++ +++++|+
T Consensus 65 ~~~V~aiiG~~~s~~~~a~~~~~~~~~~~~~~~~~~~~-~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~ 139 (360)
T cd06357 65 EDGVRVIFGCYTSSSRKAVLPVVERHDALLWYPTLYEG-FE---YSPNVIYTGAAPNQNSVPLADYLLRHYG-KRVFLVG 139 (360)
T ss_pred hCCCcEEEeCccHHHHHHHHHHHHhcCceEEeCCCccC-Cc---ccCCEEEeCCCcHHHHHHHHHHHHhcCC-cEEEEEC
Confidence 46899999999998888889999999999997654221 11 1134566777666666677776553 44 7899999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
.++.+ +....+.+.+.+++.+ ..++....+... ....++...+.+++. .+.+|++
T Consensus 140 ~d~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~~-~~~~d~s~~v~~l~~~~pd~V~~ 195 (360)
T cd06357 140 SNYIY--------PYESNRIMRDLLEQRG-GEVLGERYLPLG-ASDEDFARIVEEIREAQPDFIFS 195 (360)
T ss_pred CCCcc--------hHHHHHHHHHHHHHcC-CEEEEEEEecCC-CchhhHHHHHHHHHHcCCCEEEE
Confidence 87754 3445566666776654 233332223221 125678888888775 4555543
No 83
>KOG1053|consensus
Probab=97.52 E-value=0.0026 Score=56.26 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=59.7
Q ss_pred eeeEEE-ECCCCch--hHHHHHHHHhccCCcEEccccC-CCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570 13 VCVDAF-LGPVCDY--VIAPVARYSGVWGIPVLTAGGL-VANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF 88 (159)
Q Consensus 13 ~~v~ai-iGp~~s~--~~~~va~~~~~~~iP~is~~~~-~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~ 88 (159)
.+|.++ +++.... .+...--++....||+|+.-+. ...+.+++.-.+|+++.|+-++++++++++|+.|+|..+++
T Consensus 99 ~~V~glvf~d~s~~~avaq~LDfiSs~t~iPIisi~gg~a~~~~~kd~gs~flQlg~Sieqqa~Vml~iL~~ydW~~Fs~ 178 (1258)
T KOG1053|consen 99 ARVHGLVFEDDSDTEAVAQILDFISSQTHIPIISIHGGAAMVLTPKDLGSTFLQLGPSIEQQAQVMLKILEEYDWYNFSL 178 (1258)
T ss_pred cceeEEEeecCccchHHHHHHHHHHHhcCCcEEEEecCccceecCCCCcceEEEeCCcHHHHHHHHHHHHHHcCcceeEE
Confidence 445544 4666552 2233444567789999986554 34455665556899999999999999999999999999999
Q ss_pred EEEeC
Q psy8570 89 MFNNY 93 (159)
Q Consensus 89 i~~~~ 93 (159)
|....
T Consensus 179 vtt~~ 183 (1258)
T KOG1053|consen 179 VTTQF 183 (1258)
T ss_pred EEeec
Confidence 97765
No 84
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=95.74 E-value=0.3 Score=36.23 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=63.9
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
...+++++++..++.........+..-++|+|..+..... ...+.++.+.+...+...++.+..-+-++++++.
T Consensus 52 ~~~~~d~ii~~~~~~~~~~~~~~l~~~~ip~v~~~~~~~~------~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~ 125 (264)
T cd01537 52 IARGVDGIIIAPSDLTAPTIVKLARKAGIPVVLVDRDIPD------GDRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLA 125 (264)
T ss_pred HHcCCCEEEEecCCCcchhHHHHhhhcCCCEEEeccCCCC------CcccceEecCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3457888888777655544456667789999987765432 1344567777777888888888877888999997
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
..... .......+++.+.+++.
T Consensus 126 ~~~~~------~~~~~~~~~~~~~~~~~ 147 (264)
T cd01537 126 GPLGS------STARERVAGFKDALKEA 147 (264)
T ss_pred CCCCC------CcHHHHHHHHHHHHHHc
Confidence 65431 12333456666666544
No 85
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=94.82 E-value=1 Score=33.37 Aligned_cols=93 Identities=10% Similarity=-0.039 Sum_probs=60.0
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..++++++....+..... ...+..-++|+|..+..... +.+..+.+.+...++..++.+..-|.+++++++.
T Consensus 53 ~~~~d~iii~~~~~~~~~-~~~~~~~~ipvv~~~~~~~~-------~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~ 124 (264)
T cd06267 53 SRRVDGIILAPSRLDDEL-LEELAALGIPVVLVDRPLDG-------LGVDSVGIDNRAGAYLAVEHLIELGHRRIAFIGG 124 (264)
T ss_pred HcCcCEEEEecCCcchHH-HHHHHHcCCCEEEecccccC-------CCCCEEeeccHHHHHHHHHHHHHCCCceEEEecC
Confidence 357887776655544444 55567789999988764321 2334556666667777777777668899999976
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
+... .....+.+++.+.+++.
T Consensus 125 ~~~~------~~~~~r~~g~~~~~~~~ 145 (264)
T cd06267 125 PPDL------STARERLEGYREALEEA 145 (264)
T ss_pred CCcc------chHHHHHHHHHHHHHHc
Confidence 5431 12444566777777654
No 86
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=92.11 E-value=2.9 Score=31.56 Aligned_cols=96 Identities=17% Similarity=0.072 Sum_probs=60.2
Q ss_pred cceeeEEEECCCCchh-HHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEE
Q psy8570 11 FVVCVDAFLGPVCDYV-IAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAG 87 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~-~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~ 87 (159)
...++++||...++.. ....-..+...++|+|....... . +...++.+.+...+...++.+..- +=.+++
T Consensus 57 ~~~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~~~~~~---~----~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~ 129 (272)
T cd06300 57 IAQGVDAIIINPASPTALNPVIEEACEAGIPVVSFDGTVT---T----PCAYNVNEDQAEFGKQGAEWLVKELGGKGNVL 129 (272)
T ss_pred HHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEEecCCC---C----CceeEecCCHHHHHHHHHHHHHHHcCCCceEE
Confidence 3458888887554432 23333456668999998765321 1 234567788888888887766654 778899
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
++..... ...+..+.+++.+.+.+.+
T Consensus 130 ~i~~~~~------~~~~~~R~~g~~~a~~~~~ 155 (272)
T cd06300 130 VVRGLAG------HPVDEDRYAGAKEVLKEYP 155 (272)
T ss_pred EEECCCC------CcchHHHHHHHHHHHHHCC
Confidence 9874322 1124456677777776653
No 87
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=91.47 E-value=4.5 Score=30.00 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=59.0
Q ss_pred cceeeEEEECCCCc-hhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEE
Q psy8570 11 FVVCVDAFLGPVCD-YVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAG 87 (159)
Q Consensus 11 ~~~~v~aiiGp~~s-~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~ 87 (159)
...+++++|+-.++ .........+...++|+|..+..... ...+.++.+.+...+..+++.+... +-++++
T Consensus 52 ~~~~vdgvi~~~~~~~~~~~~~~~l~~~~ip~V~~~~~~~~------~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~ 125 (267)
T cd01536 52 IAQGVDGIIISPVDSAALTPALKKANAAGIPVVTVDSDIDG------GNRLAYVGTDNYEAGRLAGEYLAKLLGGKGKVA 125 (267)
T ss_pred HHcCCCEEEEeCCCchhHHHHHHHHHHCCCcEEEecCCCCc------cceeEEEecCHHHHHHHHHHHHHHHhCCCceEE
Confidence 34478887754333 22222334455678999987654321 1234456677777778778777666 779999
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
+++..... .......+++.+.+++.
T Consensus 126 ~i~~~~~~------~~~~~r~~gf~~~~~~~ 150 (267)
T cd01536 126 IIEGPPGS------SNAQERVKGFRDALKEY 150 (267)
T ss_pred EEEccccc------chHHHHHHHHHHHHHhC
Confidence 99865431 12344567777777665
No 88
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=90.74 E-value=5.8 Score=29.92 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=57.1
Q ss_pred ceeeEE-EECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEEE
Q psy8570 12 VVCVDA-FLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAGF 88 (159)
Q Consensus 12 ~~~v~a-iiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~~ 88 (159)
..++++ |++|..+.........+...++|+|..+.... + .. ...+.+.+...+...+..+..- +.+++++
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~-~~---~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~ 127 (275)
T cd06320 55 NKGYKGLLFSPISDVNLVPAVERAKKKGIPVVNVNDKLI---P-NA---TAFVGTDNKANGVRGAEWIIDKLAEGGKVAI 127 (275)
T ss_pred HhCCCEEEECCCChHHhHHHHHHHHHCCCeEEEECCCCC---C-cc---ceEEecCcHHHHHHHHHHHHHHhCCCceEEE
Confidence 356776 45665443333444555678999998765321 1 11 1234666666677777666544 8999999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
+....+. ..+..+.+++.+.+++.
T Consensus 128 l~~~~~~------~~~~~r~~g~~~~~~~~ 151 (275)
T cd06320 128 IEGKAGA------FAAEQRTEGFTEAIKKA 151 (275)
T ss_pred EeCCCCC------ccHHHHHHHHHHHHhhC
Confidence 8753321 23455677777888776
No 89
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=90.01 E-value=4 Score=30.42 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=55.6
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|...++.........+...++|+|....... ..+++ ....+...+...+..+...+.++++++..
T Consensus 53 ~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~~~-----~~~~~---v~~d~~~~g~~~~~~l~~~g~~~i~~i~~ 124 (266)
T cd06282 53 RQRVDGLILTVADAATSPALDLLDAERVPYVLAYNDPQ-----PGRPS---VSVDNRAAARDVAQALAALGHRRIAMLAG 124 (266)
T ss_pred hcCCCEEEEecCCCCchHHHHHHhhCCCCEEEEeccCC-----CCCCE---EeeCcHHHHHHHHHHHHHcCcccEEEecc
Confidence 45688777533332222344556677999987754321 12332 33555667777777777779999999964
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.... ......+.+++.+.+++.+
T Consensus 125 ~~~~-----~~~~~~r~~gf~~~l~~~~ 147 (266)
T cd06282 125 RLAA-----SDRARQRYAGYRAAMRAAG 147 (266)
T ss_pred cccc-----CchHHHHHHHHHHHHHHcC
Confidence 3210 0013345677777776653
No 90
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=88.42 E-value=9 Score=31.30 Aligned_cols=126 Identities=10% Similarity=0.027 Sum_probs=67.2
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCC-hhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGS-FSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~-~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
+++|.+|||--.|.+=..|--+....|-..+-+.. --.+ ..-+..+-+... +..+...+--++.+||=+++.+|-
T Consensus 66 ~d~V~~ifGc~TSasRKaVlPvvE~~~~LL~Yp~~-YEG~---E~S~nviYtGa~PNQ~~~pl~~~~~~~~G~~r~~lvG 141 (363)
T PF13433_consen 66 EDGVRAIFGCYTSASRKAVLPVVERHNALLFYPTQ-YEGF---ECSPNVIYTGAAPNQQLLPLIDYLLENFGAKRFYLVG 141 (363)
T ss_dssp HS---EEEE--SHHHHHHHHHHHHHCT-EEEE-S------------TTEEE-S--GGGTHHHHHHHHHHHS--SEEEEEE
T ss_pred hCCccEEEecchhhhHHHHHHHHHhcCceEEeccc-cccc---cCCCceEEcCCCchhhHHHHHHHHHhccCCceEEEec
Confidence 57899999998888888888888888888773321 1111 122455666644 444555666788899999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHH-HHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEE
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYK-IITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIK 154 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~-~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii 154 (159)
++.. |-.....+.+ .+...++ .++...-++- ...++.+++.+|+. ...+|+
T Consensus 142 SdYv---------~pre~Nri~r~~l~~~Gg-evvgE~Y~pl---g~td~~~ii~~I~~~~Pd~V~ 194 (363)
T PF13433_consen 142 SDYV---------YPRESNRIIRDLLEARGG-EVVGERYLPL---GATDFDPIIAEIKAAKPDFVF 194 (363)
T ss_dssp ESSH---------HHHHHHHHHHHHHHHTT--EEEEEEEE-S----HHHHHHHHHHHHHHT-SEEE
T ss_pred CCcc---------chHHHHHHHHHHHHHcCC-EEEEEEEecC---CchhHHHHHHHHHhhCCCEEE
Confidence 8764 3344444444 3344442 3332222222 45789999999885 445554
No 91
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=88.25 E-value=2.1 Score=36.77 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=63.8
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhc--cCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGV--WGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF 88 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~--~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~ 88 (159)
...|+..||||-.-.....++..... -.+|++.....+.. . .-+.++....+.++-+..++..+..=|+++..+
T Consensus 275 ~~~ga~~ViGPL~k~~V~~l~~~~~~~~~~vp~LaLN~~~~~-~---~~~~l~~f~LspEdEA~q~A~~a~~~g~~~alv 350 (536)
T PF04348_consen 275 VADGADFVIGPLLKSNVEALAQLPQLQAQPVPVLALNQPDNS-Q---APPNLYQFGLSPEDEARQAAQKAFQDGYRRALV 350 (536)
T ss_dssp HHTT--EEE---SHHHHHHHHH-GG-GGTT-EEEES---TT--------TTEEE----HHHHHHHHHHHHHHTT--S-EE
T ss_pred HHcCCCEEEcCCCHHHHHHHHhcCcccccCCceeeccCCCcc-c---CccceEEEeCCcHHHHHHHHHHHHhcCCCCEEE
Confidence 45788999999987766655554432 38899976655433 1 123456666677778889999999999999999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHH
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIA 145 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~ 145 (159)
++.+++. +..+.+++.+.+...++ ..+....|. +..++...++.
T Consensus 351 l~p~~~~--------g~R~~~aF~~~W~~~gg-~~~~~~~~~----~~~~~~~~i~~ 394 (536)
T PF04348_consen 351 LAPQNAW--------GQRMAEAFNQQWQALGG-QVAEVSYYG----SPADLQAAIQP 394 (536)
T ss_dssp EEESSHH--------HHHHHHHHHHHHHHHHS-S--EEEEES----STTHHHHHHHH
T ss_pred EcCCChH--------HHHHHHHHHHHHHHcCC-CceeeEecC----CHHHHHHHHhh
Confidence 9887754 44566777777777653 233333332 34567776664
No 92
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=87.66 E-value=9.8 Score=28.41 Aligned_cols=95 Identities=7% Similarity=-0.032 Sum_probs=57.3
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++|+|.-.+..........+...++|+|..+...+. ..++ .....+...+...++.+...|.++++++..
T Consensus 54 ~~~vdgiii~~~~~~~~~~~~~~~~~~ipvv~i~~~~~~----~~~~---~V~~d~~~~g~~a~~~l~~~g~~~i~~i~~ 126 (270)
T cd01545 54 RSRVDGVILTPPLSDNPELLDLLDEAGVPYVRIAPGTPD----PDSP---CVRIDDRAAAREMTRHLIDLGHRRIAFIAG 126 (270)
T ss_pred HCCCCEEEEeCCCCCccHHHHHHHhcCCCEEEEecCCCC----CCCC---eEEeccHHHHHHHHHHHHHCCCceEEEEeC
Confidence 457888887554432233334556689999987654221 1122 234556666677777777679999999975
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.... .....+.+++.+.+++.+
T Consensus 127 ~~~~------~~~~~R~~Gf~~~~~~~~ 148 (270)
T cd01545 127 PPDH------RASAERLEGYRDALAEAG 148 (270)
T ss_pred CCCc------hhHHHHHHHHHHHHHHcC
Confidence 4321 223445677777776653
No 93
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=86.63 E-value=7.9 Score=27.90 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=29.0
Q ss_pred eeeEEEECCCCc--hhHHHHHHHHhccCCcEEccccC
Q psy8570 13 VCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTAGGL 47 (159)
Q Consensus 13 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~~~~ 47 (159)
++++.++|+... .....+..++..+++|+++....
T Consensus 28 KRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~ 64 (162)
T TIGR00315 28 KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADT 64 (162)
T ss_pred CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCcc
Confidence 578899999875 67778999999999999976643
No 94
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=86.28 E-value=12 Score=28.11 Aligned_cols=128 Identities=10% Similarity=0.036 Sum_probs=64.8
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCC---CcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFE---LKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVA 86 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~---~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v 86 (159)
..+++++|+..++. .... .....++|+|..+...+... +....+....+...+.......+..+... +.+++
T Consensus 58 ~~~vd~iI~~~~~~-~~~~--~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~i 134 (281)
T cd06325 58 ADKPDLIVAIATPA-AQAA--ANATKDIPIVFTAVTDPVGAGLVKSLEKPGGNVTGVSDLVPVETQLELLKKLLPDAKTV 134 (281)
T ss_pred hcCCCEEEEcCcHH-HHHH--HHcCCCCCEEEEecCCccccccccccccCCCceeCeecccchHHHHHHHHHHCCCCcEE
Confidence 45788888865432 2222 24556899998764322110 11111111112223344455666666654 99999
Q ss_pred EEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEe
Q psy8570 87 GFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKS 155 (159)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~ 155 (159)
++++.... ..+....+++.+.+++.+ +..+. . . . ...+++.+.++++.....+|++
T Consensus 135 ~~l~~~~~-------~~~~~r~~g~~~~~~~~g-~~~~~-~-~-~--~~~~~~~~~~~~~~~~~dai~~ 190 (281)
T cd06325 135 GVLYNPSE-------ANSVVQVKELKKAAAKLG-IEVVE-A-T-V--SSSNDVQQAAQSLAGKVDAIYV 190 (281)
T ss_pred EEEeCCCC-------ccHHHHHHHHHHHHHhCC-CEEEE-E-e-c--CCHHHHHHHHHHhcccCCEEEE
Confidence 99975432 123455677777777654 22111 1 1 1 1234455666665443345544
No 95
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=86.25 E-value=12 Score=27.92 Aligned_cols=98 Identities=17% Similarity=0.110 Sum_probs=60.6
Q ss_pred cceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCC--cEEE
Q psy8570 11 FVVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNW--TVAG 87 (159)
Q Consensus 11 ~~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W--~~v~ 87 (159)
...++++|| .|..+......-.-+..-+||+|+.... .....+....+.+.+...+..+++.+....= .++.
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~-----~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~ 126 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD-----EAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVL 126 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST-----HHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc-----ccccccceeeeeccHHHHHHHHHHHHHHHhccCceEE
Confidence 345676655 7766656666666688889999987654 0112233456677788888888887764322 3666
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
++....+ ......+.+++.+.+++.+
T Consensus 127 ~~~~~~~------~~~~~~r~~g~~~~l~~~~ 152 (257)
T PF13407_consen 127 ILSGSPG------NPNTQERLEGFRDALKEYP 152 (257)
T ss_dssp EEESSTT------SHHHHHHHHHHHHHHHHCT
T ss_pred eccCCCC------chHHHHHHHHHHHHHhhcc
Confidence 6644332 2234457788888887743
No 96
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=85.13 E-value=8.7 Score=28.62 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=55.4
Q ss_pred cceeeEE-EECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEE
Q psy8570 11 FVVCVDA-FLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAG 87 (159)
Q Consensus 11 ~~~~v~a-iiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~ 87 (159)
...+++| +++|..+......-..+...++|+|..+..... ...+-.+...+...+...++.+..- +-++++
T Consensus 52 ~~~~~dgii~~~~~~~~~~~~l~~l~~~~ipvv~~~~~~~~------~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~ 125 (268)
T cd06323 52 ITRGVDAIIINPTDSDAVVPAVKAANEAGIPVFTIDREANG------GEVVSQIASDNVAGGKMAAEYLVKLLGGKGKVV 125 (268)
T ss_pred HHcCCCEEEEcCCChHHHHHHHHHHHHCCCcEEEEccCCCC------CceEEEEccCcHHHHHHHHHHHHHHhCCCceEE
Confidence 3456776 666655433222223345679999988654221 1123345556555667666666655 678999
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcC
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITS 117 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 117 (159)
++....+. .....+.+++.+.++.
T Consensus 126 ~l~~~~~~------~~~~~r~~g~~~~l~~ 149 (268)
T cd06323 126 ELQGIPGA------SAARERGKGFHEVVDK 149 (268)
T ss_pred EEeCCCCC------ccHHHHHHHHHHHHHh
Confidence 98764321 2244566777777776
No 97
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=84.39 E-value=20 Score=28.83 Aligned_cols=134 Identities=15% Similarity=0.028 Sum_probs=73.1
Q ss_pred eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCC---CCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CC
Q psy8570 9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVAN---FELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NW 83 (159)
Q Consensus 9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~---l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W 83 (159)
+...++.+++++-+.+.+- +-+...-++|+|-.+.+++. +-+.-+-|---=|.-++..-...-+.|++.- |=
T Consensus 83 ql~~~~~dviv~i~tp~Aq---~~~s~~~~iPVV~aavtd~v~a~Lv~~~~~pg~NvTGvsD~~~v~q~i~lik~~~Pna 159 (322)
T COG2984 83 QLVGDKPDVIVAIATPAAQ---ALVSATKTIPVVFAAVTDPVGAKLVKSLEQPGGNVTGVSDLLPVAQQIELIKALLPNA 159 (322)
T ss_pred HhhcCCCcEEEecCCHHHH---HHHHhcCCCCEEEEccCchhhccCCccccCCCCceeecCCcchHHHHHHHHHHhCCCC
Confidence 4455566666665544333 23344455999977765432 2221111222223445544455566776653 77
Q ss_pred cEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCce-EEEeeeC
Q psy8570 84 TVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRAR-IIKSLDA 158 (159)
Q Consensus 84 ~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aR-Iii~~~~ 158 (159)
++++++|..++. .-...++.|.+.+++.+ ..+...... +..+....++.+..+.. |++-+|+
T Consensus 160 k~Igv~Y~p~E~-------ns~~l~eelk~~A~~~G--l~vve~~v~----~~ndi~~a~~~l~g~~d~i~~p~dn 222 (322)
T COG2984 160 KSIGVLYNPGEA-------NSVSLVEELKKEARKAG--LEVVEAAVT----SVNDIPRAVQALLGKVDVIYIPTDN 222 (322)
T ss_pred eeEEEEeCCCCc-------ccHHHHHHHHHHHHHCC--CEEEEEecC----cccccHHHHHHhcCCCcEEEEecch
Confidence 899999998753 34567788888888875 332323332 22345556665554443 4455553
No 98
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=82.29 E-value=18 Score=26.98 Aligned_cols=94 Identities=15% Similarity=0.022 Sum_probs=54.7
Q ss_pred cceeeEEEECC-CCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH--cCCcEEE
Q psy8570 11 FVVCVDAFLGP-VCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN--FNWTVAG 87 (159)
Q Consensus 11 ~~~~v~aiiGp-~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~--f~W~~v~ 87 (159)
...++++++.. ..+.....+-..+...++|+|........ +.+..+...+...++..+..+.. -+.++++
T Consensus 52 ~~~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~~~~~-------~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~ 124 (273)
T cd06305 52 IAQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFDVDSDN-------PKVNNTTQDDYSLARLSLDQLVKDLGGKGNVG 124 (273)
T ss_pred HHcCCCEEEEecCChhhhHHHHHHHHHcCCCEEEecCCCCC-------CccceeeechHHHHHHHHHHHHHHhCCCCCEE
Confidence 45578888764 33333333334456789999987653211 22334666667777766666655 4889999
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
++... +. .....+.+++.+.+++.
T Consensus 125 ~i~~~-~~------~~~~~R~~g~~~~~~~~ 148 (273)
T cd06305 125 YVNVA-GF------PPLDRRYDVWQAVLKAY 148 (273)
T ss_pred EEEcc-CC------chHHHHHHHHHHHHHHC
Confidence 98643 21 12334555666655554
No 99
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=82.15 E-value=15 Score=26.71 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=35.0
Q ss_pred ceeeEEEECCCCch---hHHHHHHHHhccCCcEEccccCCCCCCCcccCC
Q psy8570 12 VVCVDAFLGPVCDY---VIAPVARYSGVWGIPVLTAGGLVANFELKFEYP 58 (159)
Q Consensus 12 ~~~v~aiiGp~~s~---~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~ 58 (159)
.++++.++|..... ....+..++..+++|+++.......|..+...+
T Consensus 34 AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~ 83 (171)
T PRK00945 34 AKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDA 83 (171)
T ss_pred CCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccC
Confidence 36788999998854 566688999999999998776555555554433
No 100
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=81.24 E-value=2.1 Score=30.64 Aligned_cols=31 Identities=26% Similarity=0.200 Sum_probs=27.5
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++.++||++|.=+.....++..+++++++.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~ 31 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAG 31 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECC
Confidence 4688999999988888899999999999875
No 101
>PTZ00088 adenylate kinase 1; Provisional
Probab=80.93 E-value=2.1 Score=32.52 Aligned_cols=31 Identities=10% Similarity=-0.103 Sum_probs=27.8
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
++++||+.+.-......++..+++|+|+.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~is~gd 39 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHINMGN 39 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEECCh
Confidence 7889999999888888899999999998774
No 102
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=79.17 E-value=2.2 Score=28.26 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=28.0
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
+++|.||+++.=+.....++..+++|++....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 46889999999998889999999999987665
No 103
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=77.87 E-value=2.9 Score=30.92 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=26.4
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+.|+||+.|.-+.....++..+++++|+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~g 31 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTG 31 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehh
Confidence 578999999988888889999999999875
No 104
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=77.66 E-value=27 Score=26.10 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=56.9
Q ss_pred cceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEE
Q psy8570 11 FVVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAG 87 (159)
Q Consensus 11 ~~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~ 87 (159)
...+++++| .|..+.........+...++|+|..+...... ...+..+...+...+...++.|... +=.+++
T Consensus 53 ~~~~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~ 127 (272)
T cd06301 53 IAQGVDAIIVVPVDTAATAPIVKAANAAGIPLVYVNRRPENA-----PKGVAYVGSDEVVAGRLQAEYVADKLGGKGNVA 127 (272)
T ss_pred HHcCCCEEEEecCchhhhHHHHHHHHHCCCeEEEecCCCCCC-----CCeeEEEecChHHHHHHHHHHHHHHhCCCccEE
Confidence 355777765 66554333344455678899999876432111 1234556667666777666665443 446898
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
++....+ ......+.+++.+.+.+.+
T Consensus 128 ~i~~~~~------~~~~~~R~~gf~~~l~~~~ 153 (272)
T cd06301 128 ILMGPLG------QSAQIDRTKGVEEVLAKYP 153 (272)
T ss_pred EEECCCC------CccHHHHHHHHHHHHHHCC
Confidence 8865432 1223455677777776653
No 105
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.53 E-value=28 Score=25.77 Aligned_cols=95 Identities=12% Similarity=-0.017 Sum_probs=54.7
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
...+++|++...+.......-..+...++|+|....... + ... ..+.+.....+...++.+..-|-++++++.
T Consensus 52 ~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~~~---~-~~~---~~v~~d~~~~~~~~~~~l~~~g~~~i~~l~ 124 (268)
T cd06289 52 LEHGVAGIILCPAAGTSPDLLKRLAESGIPVVLVAREVA---G-APF---DYVGPDNAAGARLATEHLISLGHRRIAFIG 124 (268)
T ss_pred HHcCCCEEEEeCCCCccHHHHHHHHhcCCCEEEEeccCC---C-CCC---CEEeecchHHHHHHHHHHHHCCCCCEEEec
Confidence 346788887765543333344556678999998764322 1 111 234455555666666666666778898886
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
.+.+. .....+.++..+.+++.
T Consensus 125 ~~~~~------~~~~~r~~gf~~~l~~~ 146 (268)
T cd06289 125 GLEDS------STRRERLAGYRAALAEA 146 (268)
T ss_pred CCccc------cchHHHHHHHHHHHHHc
Confidence 43321 12334566666666554
No 106
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=76.17 E-value=3.4 Score=30.10 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=27.0
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+.|+||+-+.-+.....+++.+++||++.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~hlstg 32 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLPHLDTG 32 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEcHh
Confidence 578999999999889999999999999865
No 107
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=75.97 E-value=2.1 Score=29.83 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=25.8
Q ss_pred EECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 18 FLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 18 iiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
++||+.|.=......+|..|++++|+.+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~ 29 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGD 29 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHH
Confidence 68999998888889999999999998764
No 108
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=75.49 E-value=3.4 Score=31.42 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=24.7
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
++.+|+||+|+.-+...-.+|...+.|+|+.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~ 32 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISL 32 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEe
Confidence 6789999999999888889999999999853
No 109
>PRK14530 adenylate kinase; Provisional
Probab=74.74 E-value=4.4 Score=30.06 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=28.2
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++.++|+||+.+.=+.....++..+++|+|+.+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g 35 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTG 35 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEecc
Confidence 345789999999988888889999999999764
No 110
>PRK14527 adenylate kinase; Provisional
Probab=73.21 E-value=4.1 Score=29.62 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=29.3
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+.++..++||+.+.-+.....++..+++++++.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~g 38 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTG 38 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCcc
Confidence 4568899999999988888889999999998764
No 111
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.03 E-value=38 Score=25.18 Aligned_cols=94 Identities=13% Similarity=0.006 Sum_probs=53.2
Q ss_pred ceeeEEEEC-CCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEEE
Q psy8570 12 VVCVDAFLG-PVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAGF 88 (159)
Q Consensus 12 ~~~v~aiiG-p~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~~ 88 (159)
..+++++|- |..+......-..+...++|+|....... + ...+..+.+.+..-+...++.+... |-.++++
T Consensus 53 ~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~---~---~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~ 126 (267)
T cd06322 53 TKKVDAIVLSPVDSKGIRAAIAKAKKAGIPVITVDIAAE---G---VAVVSHVATDNYAGGVLAGELAAKVLNGKGQVAI 126 (267)
T ss_pred HcCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEEcccCC---C---CceEEEEecChHHHHHHHHHHHHHHhCCCceEEE
Confidence 456776654 44333222222334567999998864211 1 1223346666666666666666543 7789999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
++..+. .....+.+++.+.+++.
T Consensus 127 i~~~~~-------~~~~~R~~gf~~~~~~~ 149 (267)
T cd06322 127 IDYPTV-------QSVVDRVRGFKEALADY 149 (267)
T ss_pred EecCCC-------ccHHHHHHHHHHHHHhC
Confidence 864321 12345667777777765
No 112
>PRK13808 adenylate kinase; Provisional
Probab=71.99 E-value=4.8 Score=32.46 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=26.5
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+.|+||+++.-......++..|++++++.|
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~g 32 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTG 32 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 568999999988888889999999999864
No 113
>PLN02674 adenylate kinase
Probab=71.69 E-value=5.3 Score=30.75 Aligned_cols=71 Identities=10% Similarity=0.025 Sum_probs=49.2
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccccCC-------CCC--------------CC------------c--ccCC
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLV-------ANF--------------EL------------K--FEYP 58 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~-------~~l--------------~~------------~--~~~~ 58 (159)
.-+.++||+.+.=......++..|++++|+.|..- ..+ .+ + ..-.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g 111 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 111 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCCc
Confidence 34678999999888888999999999999875310 000 00 0 0122
Q ss_pred eeEEeeCChhhHHHHHHHHHHHcCCc
Q psy8570 59 TLTRMMGSFSLVGQAVQSILKNFNWT 84 (159)
Q Consensus 59 ~~~r~~p~~~~~~~a~~~ll~~f~W~ 84 (159)
.++-=.|....|+..+-.++..++..
T Consensus 112 ~ilDGfPRt~~Qa~~l~~~l~~~~~~ 137 (244)
T PLN02674 112 FILDGFPRTVVQAQKLDEMLAKQGAK 137 (244)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 44555688888899888888887754
No 114
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=71.22 E-value=5.7 Score=31.70 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=29.9
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
..++.+|.||.++.=+...-.+|..++.++|+.-
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~D 35 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLD 35 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecc
Confidence 3568899999999999888899999999999754
No 115
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=69.54 E-value=6.6 Score=28.18 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=26.1
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+.++||..+.-+.....++..+++++++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~ 31 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTG 31 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECc
Confidence 578999999988888889999999999864
No 116
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=69.45 E-value=44 Score=24.82 Aligned_cols=93 Identities=14% Similarity=0.117 Sum_probs=53.4
Q ss_pred ceeeEEEE--CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570 12 VVCVDAFL--GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM 89 (159)
Q Consensus 12 ~~~v~aii--Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i 89 (159)
..+++|++ |+..+ ......+...++|+|..+..... ..++ .....+...+...++.+..-|.++++++
T Consensus 53 ~~~vdgiii~~~~~~---~~~~~~l~~~~iPvv~~~~~~~~----~~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~i 122 (268)
T cd06273 53 ERGVDGLALIGLDHS---PALLDLLARRGVPYVATWNYSPD----SPYP---CVGFDNREAGRLAARHLIALGHRRIAMI 122 (268)
T ss_pred hcCCCEEEEeCCCCC---HHHHHHHHhCCCCEEEEcCCCCC----CCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEE
Confidence 34565544 44322 23334556679999987643211 1223 3445666677777776666699999999
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
...... ......+.+++.+.+.+.+
T Consensus 123 ~~~~~~-----~~~~~~r~~gf~~~l~~~~ 147 (268)
T cd06273 123 FGPTQG-----NDRARARRAGVRAALAEAG 147 (268)
T ss_pred eccccC-----CccHHHHHHHHHHHHHHcC
Confidence 753211 1123456777777777653
No 117
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=68.38 E-value=5.7 Score=28.94 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=27.0
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEE
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVL 42 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~i 42 (159)
.|.++|+||.+|.-+..+..++..+|-|..
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt~~~ 37 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNTTSA 37 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCCCch
Confidence 578999999999999999999999998854
No 118
>PRK14528 adenylate kinase; Provisional
Probab=68.28 E-value=7.6 Score=28.23 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=27.2
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
-..++||+.+.-+.....++..+++|+++.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~ 34 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGD 34 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCH
Confidence 36789999998888888899999999997653
No 119
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.24 E-value=48 Score=24.82 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=60.3
Q ss_pred cceeeEEEECCCCc-hhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH-cCCcEEEE
Q psy8570 11 FVVCVDAFLGPVCD-YVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN-FNWTVAGF 88 (159)
Q Consensus 11 ~~~~v~aiiGp~~s-~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~-f~W~~v~~ 88 (159)
...++++++.-... ......-..+...++|+|.......... ..+.+..+...+...+...+..+.. -+-.++++
T Consensus 54 ~~~~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~~~~~~---~~~~~~~V~~d~~~~g~~~~~~l~~~~g~~~i~~ 130 (271)
T cd06312 54 IAAKPDGIVVTIPDPDALDPAIKRAVAAGIPVISFNAGDPKYK---ELGALAYVGQDEYAAGEAAGERLAELKGGKNVLC 130 (271)
T ss_pred HHhCCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeCCCCCccc---cccceEEeccChHHHHHHHHHHHHHhcCCCeEEE
Confidence 34567777653332 2222333444567999998865322111 1123355677788888888888877 78889988
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
+..+.+ ......+.+++.+.++..+
T Consensus 131 i~g~~~------~~~~~~r~~g~~~~~~~~~ 155 (271)
T cd06312 131 VIHEPG------NVTLEDRCAGFADGLGGAG 155 (271)
T ss_pred EecCCC------CccHHHHHHHHHHHHHhcC
Confidence 864322 1234456778878777653
No 120
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=68.09 E-value=48 Score=24.79 Aligned_cols=90 Identities=9% Similarity=-0.042 Sum_probs=55.1
Q ss_pred eeeEEEE--CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 13 VCVDAFL--GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 13 ~~v~aii--Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
.+++++| ++..+ ...+ ..+...++|+|..+...+. . .+..+.+.+...+...+..+..-+.++++++.
T Consensus 63 ~~~dgiii~~~~~~--~~~~-~~~~~~~ipvV~~~~~~~~----~---~~~~V~~d~~~~g~~~a~~l~~~g~~~i~~i~ 132 (275)
T cd06295 63 GRADGVILIGQHDQ--DPLP-ERLAETGLPFVVWGRPLPG----Q---PYCYVGSDNVGGGRLATEHLLARGRRRIAFLG 132 (275)
T ss_pred CCCCEEEEeCCCCC--hHHH-HHHHhCCCCEEEECCccCC----C---CCCEEEECcHHHHHHHHHHHHHCCCCeEEEEc
Confidence 5677665 33222 2223 3445679999987753221 1 22345666667777777777777999999986
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
.... ...+..+.+++.+.+++.
T Consensus 133 ~~~~------~~~~~~r~~gf~~~~~~~ 154 (275)
T cd06295 133 GPQD------MPEGEERLEGYREALAEA 154 (275)
T ss_pred CCCC------cchhHHHHHHHHHHHHHc
Confidence 5332 123556677777777654
No 121
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.95 E-value=48 Score=24.70 Aligned_cols=93 Identities=12% Similarity=-0.049 Sum_probs=52.4
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|--.+... . ....+..-++|+|..+...+. ...+ .+...+...+...++.+...|.++++++..
T Consensus 56 ~~~vdgiii~~~~~~-~-~~~~l~~~~ipvV~~~~~~~~----~~~~---~V~~d~~~~~~~a~~~l~~~g~~~i~~i~~ 126 (268)
T cd06277 56 DGKVDGIILLGGIST-E-YIKEIKELGIPFVLVDHYIPN----EKAD---CVLTDNYSGAYAATEYLIEKGHRKIGFVGD 126 (268)
T ss_pred HCCCCEEEEeCCCCh-H-HHHHHhhcCCCEEEEccCCCC----CCCC---EEEecchHHHHHHHHHHHHCCCCcEEEECC
Confidence 456777774333222 2 233445568999977643211 1122 244555556666666666679999999965
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.... .....+.+++.+.+.+.+
T Consensus 127 ~~~~------~~~~~R~~gf~~~~~~~~ 148 (268)
T cd06277 127 PLYS------PSFEERYEGYKKALLDHG 148 (268)
T ss_pred CCCC------cchHHHHHHHHHHHHHcC
Confidence 4321 123455667777776653
No 122
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=67.64 E-value=7.1 Score=27.81 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=28.4
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
.++++++||..+.=+.....++..++.++++.|
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g 35 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTG 35 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 457899999999888888889999999999775
No 123
>PLN02200 adenylate kinase family protein
Probab=67.03 E-value=8.6 Score=29.20 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=28.3
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
.+..++||+.+.=+.....++..+++++++.|.
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his~gd 76 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLSAGD 76 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEEccH
Confidence 467889999998888888899999999998754
No 124
>PRK01184 hypothetical protein; Provisional
Probab=67.00 E-value=7.8 Score=27.79 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=25.8
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
.++++.||+++.=+. ++.++..+++|+++.+
T Consensus 2 ~~i~l~G~~GsGKsT-~a~~~~~~g~~~i~~~ 32 (184)
T PRK01184 2 KIIGVVGMPGSGKGE-FSKIAREMGIPVVVMG 32 (184)
T ss_pred cEEEEECCCCCCHHH-HHHHHHHcCCcEEEhh
Confidence 367899999998665 6789999999999875
No 125
>PRK00279 adk adenylate kinase; Reviewed
Probab=66.89 E-value=8 Score=28.66 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=26.2
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+.|+||+.+.-+.....++..+++++++.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~~ 32 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHISTG 32 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 678999999888888889999999999864
No 126
>PLN02459 probable adenylate kinase
Probab=64.89 E-value=8.6 Score=29.93 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=27.1
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
..++||+.+.-......++..+++++|+.|-
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~~~~is~gd 62 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLGVPHIATGD 62 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeCcH
Confidence 5778999998888889999999999998764
No 127
>PRK14531 adenylate kinase; Provisional
Probab=64.83 E-value=9.8 Score=27.44 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=26.8
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
-+.++||+.|.=+.....++..+++++|+.|
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~g 34 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTG 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEecc
Confidence 3678999999888888889999999999865
No 128
>PRK02496 adk adenylate kinase; Provisional
Probab=64.19 E-value=8.7 Score=27.56 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=26.1
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
.+++||+.+.-+.....++..+++|+++.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~~ 33 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHISTG 33 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEhH
Confidence 578899999988888889999999999765
No 129
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=63.96 E-value=5.1 Score=27.39 Aligned_cols=41 Identities=15% Similarity=-0.002 Sum_probs=31.6
Q ss_pred ceeeEEEECCCCc--hhHHHHHHHHhccCCcEEccccCCCCCC
Q psy8570 12 VVCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTAGGLVANFE 52 (159)
Q Consensus 12 ~~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~~~~~~~l~ 52 (159)
.++++.++|.... .....+.+++..+++|+++.......++
T Consensus 11 A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~ 53 (137)
T PF00205_consen 11 AKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIP 53 (137)
T ss_dssp -SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSST
T ss_pred CCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccC
Confidence 3578899999887 7888999999999999997665444444
No 130
>PRK14532 adenylate kinase; Provisional
Probab=63.93 E-value=10 Score=27.25 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=26.3
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+.++||+.+.=+.....++..+++++|+.+
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~ 32 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLSTG 32 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeCc
Confidence 567899999888888899999999999875
No 131
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=63.27 E-value=60 Score=24.19 Aligned_cols=97 Identities=9% Similarity=-0.041 Sum_probs=55.3
Q ss_pred cceeeEEE-ECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc------CC
Q psy8570 11 FVVCVDAF-LGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF------NW 83 (159)
Q Consensus 11 ~~~~v~ai-iGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f------~W 83 (159)
...+++++ ++|..+......-..+...++|+|....... + . ..+..+.+.+...+...++.+... +-
T Consensus 52 ~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~~~---~-~--~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~ 125 (277)
T cd06319 52 IDKGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIADIGAE---G-G--DYVSYIKSDNYEGAYDLGKFLAAAMKAQGWAD 125 (277)
T ss_pred HhcCCCEEEEcCCchhhhHHHHHHHHHCCCCEEEEecCCC---C-C--ceEEEEeeccHHHHHHHHHHHHHHHHhhCCCC
Confidence 34567766 5775544344445666778999998653211 1 1 122344555555555555544332 45
Q ss_pred cEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 84 TVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 84 ~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.+++++....+ ......+.++..+.+++.+
T Consensus 126 ~~i~~i~~~~~------~~~~~~r~~gf~~~l~~~~ 155 (277)
T cd06319 126 GKVGMVAIPQK------RKNGQKRTKGFKEAMKEAG 155 (277)
T ss_pred CcEEEEeccCC------CccHHHHHHHHHHHHHhcC
Confidence 78998874332 1234556778888887764
No 132
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=63.12 E-value=61 Score=24.22 Aligned_cols=99 Identities=20% Similarity=0.124 Sum_probs=59.3
Q ss_pred cceeeEEE-ECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEE
Q psy8570 11 FVVCVDAF-LGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAG 87 (159)
Q Consensus 11 ~~~~v~ai-iGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~ 87 (159)
...+++++ +.|.....+...-..+...++|+|........ ......+.++.+.+...+...++.+... +-.+++
T Consensus 52 ~~~~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~~~~~~---~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~ 128 (273)
T cd06309 52 IAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILVDRGVDV---KDDSLYVTFIGSDFVEEGRRAADWLAKATGGKGNIV 128 (273)
T ss_pred HHcCCCEEEEcCCccccchHHHHHHHHCCCCEEEEecCcCC---ccCcceeeEecCChHHHHHHHHHHHHHHcCCCceEE
Confidence 34566655 45654443333334566789999988753211 1111234567777777777777766665 778999
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
++....+. .....+.+++.+.+++.
T Consensus 129 ~i~~~~~~------~~~~~R~~Gf~~~l~~~ 153 (273)
T cd06309 129 ELQGTVGS------SVAIDRKKGFAEVIKKY 153 (273)
T ss_pred EEeCCCCC------chHHHHHHHHHHHHHHC
Confidence 88754321 22345677778878764
No 133
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=61.20 E-value=64 Score=23.80 Aligned_cols=93 Identities=4% Similarity=-0.086 Sum_probs=53.1
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++|+|...+..... ...... -++|+|..+.... . +....+...+...+...++.+..-|.++++++..
T Consensus 53 ~~~vdgiii~~~~~~~~-~~~~~~-~~ipvv~~~~~~~----~---~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~l~~ 123 (267)
T cd06284 53 RKQADGIILLDGSLPPT-ALTALA-KLPPIVQACEYIP----G---LAVPSVSIDNVAAARLAVDHLISLGHRRIALITG 123 (267)
T ss_pred HcCCCEEEEecCCCCHH-HHHHHh-cCCCEEEEecccC----C---CCcceEEecccHHHHHHHHHHHHcCCceEEEEcC
Confidence 45788777633332222 222233 3899997653211 1 1123355566666777777777779999999975
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.... ..+..+.+++.+.+++.+
T Consensus 124 ~~~~------~~~~~r~~gf~~~~~~~~ 145 (267)
T cd06284 124 PRDN------PLARDRLEGYRQALAEAG 145 (267)
T ss_pred Cccc------hhHHHHHHHHHHHHHHcC
Confidence 4321 124456677777776653
No 134
>PRK14529 adenylate kinase; Provisional
Probab=60.93 E-value=9 Score=29.05 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=26.9
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
.+++||..+.=......++..+++++++.|-
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gd 33 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGA 33 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccch
Confidence 5789999999888889999999999997653
No 135
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=60.63 E-value=11 Score=27.38 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=27.6
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEccccC
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGL 47 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~ 47 (159)
+++|=||+-|..+.....+|.+++.|+++.|-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~i 34 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTI 34 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccHH
Confidence 356779998988888888999999999997743
No 136
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.62 E-value=67 Score=23.85 Aligned_cols=98 Identities=12% Similarity=0.068 Sum_probs=51.2
Q ss_pred cceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEE-eeCChhhHHHHHHHHH-HHc-CCcEE
Q psy8570 11 FVVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTR-MMGSFSLVGQAVQSIL-KNF-NWTVA 86 (159)
Q Consensus 11 ~~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r-~~p~~~~~~~a~~~ll-~~f-~W~~v 86 (159)
...++++++ .|..+.........+...++|+|..+..... ...+.... +.+.+...+...+..+ +++ +=+++
T Consensus 53 ~~~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~~~~~~~----~~~~~v~~~v~~d~~~~g~~~~~~l~~~~~g~~~i 128 (275)
T cd06317 53 IAQKVDGIILWPTDGQAYIPGLRKAKQAGIPVVITNSNISE----KGFEFIKSFTGPDDISQGERSAEAMCKALGGKGQI 128 (275)
T ss_pred HHcCCCEEEEecCCccccHHHHHHHHHCCCcEEEeCCCCCC----CccchhhhhccccHHHHHHHHHHHHHHHcCCCceE
Confidence 455788775 4433333333334556789999987653211 11222212 2334444555444444 433 66789
Q ss_pred EEEEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 87 GFMFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
+++....+. .....+.+++.+.+++.
T Consensus 129 ~~l~~~~~~------~~~~~r~~g~~~~~~~~ 154 (275)
T cd06317 129 VVIAGQPGN------GTAIERQKGFEDELAEV 154 (275)
T ss_pred EEEecCCCC------chHHHHHHHHHHHHHhh
Confidence 888754321 12334566777777665
No 137
>PRK08118 topology modulation protein; Reviewed
Probab=56.19 E-value=15 Score=26.31 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=26.4
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
+.|+||+.+.=+.....++...++|+++...
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 6889999998888888899999999886553
No 138
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=55.94 E-value=19 Score=28.70 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=29.7
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
..++.+|.||+.+.=+.....++...+.++|+.-+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 45789999999999998888999999999886543
No 139
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=54.78 E-value=84 Score=23.14 Aligned_cols=94 Identities=13% Similarity=0.035 Sum_probs=55.6
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
...++++++--.+...... -..+...++|+|..+...+. . .+..+.+.+...++..++.+..-+-++++++.
T Consensus 51 ~~~~vdgiii~~~~~~~~~-~~~~~~~~ipvV~~~~~~~~----~---~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~ 122 (266)
T cd06278 51 LQYRVDGVIVTSGTLSSEL-AEECRRNGIPVVLINRYVDG----P---GVDAVCSDNYEAGRLAAELLLAKGCRRIAFIG 122 (266)
T ss_pred HHcCCCEEEEecCCCCHHH-HHHHhhcCCCEEEECCccCC----C---CCCEEEEChHHHHHHHHHHHHHCCCceEEEEc
Confidence 3466776664333333332 34455579999988653221 1 12346677777788888877777888999997
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
.+.+. .....+.+++.+.+++.
T Consensus 123 ~~~~~------~~~~~R~~gf~~~~~~~ 144 (266)
T cd06278 123 GPADT------STSRERERGFRDALAAA 144 (266)
T ss_pred CCCcc------cchHHHHHHHHHHHHHc
Confidence 54321 12233456666666554
No 140
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=53.35 E-value=99 Score=23.86 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=39.7
Q ss_pred HHHHHHHcCCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHh-cCceE
Q psy8570 74 VQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAIT-KRARI 152 (159)
Q Consensus 74 ~~~ll~~f~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~-~~aRI 152 (159)
+-.+++.++.+++.+|+..+ .+...-+.+.+.++..+ ..+..........+.++..++.+.++ .++.+
T Consensus 10 l~~~l~~~~~~~~lvv~d~~---------t~~~~g~~v~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 78 (250)
T PF13685_consen 10 LPEILSELGLKKVLVVTDEN---------TYKAAGEKVEESLKSAG--IEVAVIEEFVGDADEDEVEKLVEALRPKDADL 78 (250)
T ss_dssp HHHHHGGGT-SEEEEEEETT---------HHHHHHHHHHHHHHTTT---EEEEEE-EE---BHHHHHHHHTTS--TT--E
T ss_pred HHHHHHhcCCCcEEEEEcCC---------HHHHHHHHHHHHHHHcC--CeEEEEecCCCCCCHHHHHHHHHHhcccCCCE
Confidence 45677777888998888654 35556678888888774 22222221121223444555565554 35567
Q ss_pred EEeee
Q psy8570 153 IKSLD 157 (159)
Q Consensus 153 ii~~~ 157 (159)
||.+.
T Consensus 79 ii~vG 83 (250)
T PF13685_consen 79 IIGVG 83 (250)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 77654
No 141
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=53.13 E-value=20 Score=24.17 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=26.1
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+++|.||..+.-+.....++..+++|++..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 4678899988888777789999999999876
No 142
>PRK14526 adenylate kinase; Provisional
Probab=52.74 E-value=19 Score=26.85 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=25.7
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
.+++||..+.=+.....++..+++++++.|.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~ 33 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGD 33 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecCh
Confidence 4688999988887778888899999998664
No 143
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=51.82 E-value=94 Score=22.84 Aligned_cols=93 Identities=8% Similarity=-0.045 Sum_probs=54.2
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..++++++.-.+.... .+...+...++|+|..+...+ .. ..+.+.+...+...++.+..-+-++++++..
T Consensus 53 ~~~~dgii~~~~~~~~-~~~~~~~~~~ipvv~~~~~~~------~~---~~v~~d~~~~~~~~~~~l~~~g~~~i~~v~~ 122 (259)
T cd01542 53 RQKVDGIILLATTITD-EHREAIKKLNVPVVVVGQDYP------GI---SSVVYDDYGAGYELGEYLAQQGHKNIAYLGV 122 (259)
T ss_pred hcCCCEEEEeCCCCCH-HHHHHHhcCCCCEEEEeccCC------CC---CEEEECcHHHHHHHHHHHHHcCCCcEEEEcC
Confidence 4677777754433222 233444556899998864321 11 2355666667777777777678889998854
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
... .......+.+++.+.+++.+
T Consensus 123 ~~~-----~~~~~~~r~~gf~~~~~~~~ 145 (259)
T cd01542 123 SES-----DIAVGILRKQGYLDALKEHG 145 (259)
T ss_pred Ccc-----cchhHHHHHHHHHHHHHHcC
Confidence 321 01122345677777776654
No 144
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=50.82 E-value=1.1e+02 Score=23.48 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=57.0
Q ss_pred ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcE-EEE
Q psy8570 10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTV-AGF 88 (159)
Q Consensus 10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~-v~~ 88 (159)
..+++|+++|=-+.......+..+... ++|+|..+...... ..++ .....+..-+....+-|..-|-++ +++
T Consensus 52 l~~~~vDGiI~~s~~~~~~~l~~~~~~-~iPvV~~~~~~~~~---~~~~---~V~~D~~~a~~~a~~~Li~~Gh~~~I~~ 124 (279)
T PF00532_consen 52 LLQRRVDGIILASSENDDEELRRLIKS-GIPVVLIDRYIDNP---EGVP---SVYIDNYEAGYEATEYLIKKGHRRPIAF 124 (279)
T ss_dssp HHHTTSSEEEEESSSCTCHHHHHHHHT-TSEEEEESS-SCTT---CTSC---EEEEEHHHHHHHHHHHHHHTTCCSTEEE
T ss_pred HHhcCCCEEEEecccCChHHHHHHHHc-CCCEEEEEeccCCc---ccCC---EEEEcchHHHHHHHHHHHhcccCCeEEE
Confidence 344556655522222224567777777 99999876542211 1233 233445555556666666678899 999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
+....+. .....+.++..+.+++.+
T Consensus 125 i~~~~~~------~~~~~R~~Gy~~Al~~~G 149 (279)
T PF00532_consen 125 IGGPEDS------STSRERLQGYRDALKEAG 149 (279)
T ss_dssp EEESTTT------HHHHHHHHHHHHHHHHTT
T ss_pred EecCcch------HHHHHHHHHHHHHHHHcC
Confidence 9876542 234456777788888874
No 145
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=50.03 E-value=1e+02 Score=22.71 Aligned_cols=93 Identities=11% Similarity=-0.069 Sum_probs=53.2
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
.+++++|...+......+ ..+...++|+|..+..... ..+++ ..+.+...+...++.+...|-++++++...
T Consensus 58 ~~vdgiii~~~~~~~~~~-~~~~~~~ipvV~~~~~~~~----~~~~~---V~~d~~~~~~~a~~~l~~~g~~~i~~i~~~ 129 (268)
T cd06271 58 GLVDGVIISRTRPDDPRV-ALLLERGFPFVTHGRTELG----DPHPW---VDFDNEAAAYQAVRRLIALGHRRIALLNPP 129 (268)
T ss_pred CCCCEEEEecCCCCChHH-HHHHhcCCCEEEECCcCCC----CCCCe---EeeCcHHHHHHHHHHHHHcCCCcEEEecCc
Confidence 457877764443222223 3345679999987543221 12332 445555566666666666688999998644
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
... .....+.+++.+.+.+.+
T Consensus 130 ~~~------~~~~~R~~gf~~~~~~~~ 150 (268)
T cd06271 130 EDL------TFAQHRRAGYRRALAEAG 150 (268)
T ss_pred ccc------chHHHHHHHHHHHHHHhC
Confidence 321 123446677777776653
No 146
>PRK00023 cmk cytidylate kinase; Provisional
Probab=49.20 E-value=23 Score=26.64 Aligned_cols=35 Identities=20% Similarity=0.095 Sum_probs=28.8
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
...+++|.||..+.-+.....++..+++|+++.+.
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~ 37 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGA 37 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCch
Confidence 45688999999998887777788999999987665
No 147
>PRK08356 hypothetical protein; Provisional
Probab=48.47 E-value=30 Score=25.16 Aligned_cols=33 Identities=6% Similarity=0.037 Sum_probs=25.3
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccccC
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGL 47 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~ 47 (159)
.+.++.||+++.=......+ ..+++++|+.+..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l-~~~g~~~is~~~~ 38 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF-EEKGFCRVSCSDP 38 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH-HHCCCcEEeCCCc
Confidence 46788999999877665556 4589999998753
No 148
>PRK07261 topology modulation protein; Provisional
Probab=46.33 E-value=29 Score=24.79 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=25.3
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++|+||+.+.=+.....++..+++|++...
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 578999999888888889999999988643
No 149
>PRK06217 hypothetical protein; Validated
Probab=46.18 E-value=29 Score=24.87 Aligned_cols=31 Identities=16% Similarity=0.043 Sum_probs=26.4
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
++|+|++.+.=+.....++..+++|++....
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~ 34 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPHLDTDD 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence 6889999998888888899999999986543
No 150
>PRK00131 aroK shikimate kinase; Reviewed
Probab=44.55 E-value=37 Score=23.55 Aligned_cols=33 Identities=6% Similarity=-0.166 Sum_probs=27.4
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
+...+.+.||.++.=+.....++..++.|.+..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 456788999999988887788999999998854
No 151
>PLN02165 adenylate isopentenyltransferase
Probab=44.22 E-value=33 Score=27.74 Aligned_cols=35 Identities=6% Similarity=-0.045 Sum_probs=28.7
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
+.++.+|+||..+.=+...-.++...+.++|+..+
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 44589999999998888888899999988887643
No 152
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=40.21 E-value=1.5e+02 Score=21.86 Aligned_cols=72 Identities=7% Similarity=0.011 Sum_probs=45.0
Q ss_pred hccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHH
Q psy8570 35 GVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKI 114 (159)
Q Consensus 35 ~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~ 114 (159)
...++|+|..+.... ..++ .+.+.+...+...++.|..-|.++++++....+ +...+..+.+++.+.
T Consensus 72 ~~~gipvv~~~~~~~-----~~~~---~V~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~-----~~~~~~~r~~gf~~~ 138 (265)
T cd06291 72 ENIDLPIVSFDRYLS-----ENIP---IVSSDNYEGGRLAAEELIERGCKHIAHIGGPNN-----TVSPTNLRYEGFLDV 138 (265)
T ss_pred hcCCCCEEEEeCCCC-----CCCC---eEeechHHHHHHHHHHHHHcCCcEEEEEccCcc-----cccchHHHHHHHHHH
Confidence 456899998875432 1222 345555566677777666668899998865432 012345667777777
Q ss_pred HcCCC
Q psy8570 115 ITSPS 119 (159)
Q Consensus 115 l~~~~ 119 (159)
+++.+
T Consensus 139 l~~~~ 143 (265)
T cd06291 139 LKENG 143 (265)
T ss_pred HHHcC
Confidence 76653
No 153
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=39.43 E-value=52 Score=23.47 Aligned_cols=34 Identities=6% Similarity=-0.067 Sum_probs=27.7
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+.+.++++||..+.=+.....++...+.|.+...
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 4556899999999888888888888999988654
No 154
>PLN02748 tRNA dimethylallyltransferase
Probab=39.28 E-value=38 Score=28.72 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=29.0
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+.++++|+||..+.=+...-.+|..++.++|+.-
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~D 54 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINAD 54 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCc
Confidence 4458999999999988888899999999988654
No 155
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=39.10 E-value=42 Score=26.49 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=27.0
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+++|+||+.+.=+.....++...+.++|+..
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~D 31 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVD 31 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEec
Confidence 4689999999999999999999999888764
No 156
>PRK03839 putative kinase; Provisional
Probab=38.59 E-value=45 Score=23.67 Aligned_cols=30 Identities=10% Similarity=-0.120 Sum_probs=25.9
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+.++||+.+.=+.....++..+++|++..+
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 678999999888778889999999999765
No 157
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=38.43 E-value=36 Score=24.40 Aligned_cols=26 Identities=12% Similarity=-0.020 Sum_probs=21.2
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhcc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVW 37 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~ 37 (159)
+.++.+++||+++.-......++...
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999888777787654
No 158
>PRK13949 shikimate kinase; Provisional
Probab=38.43 E-value=46 Score=23.73 Aligned_cols=30 Identities=7% Similarity=-0.027 Sum_probs=24.9
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++++||..+.=+.....+|..++.|.+...
T Consensus 4 I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 678999998888777778999999988643
No 159
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=37.78 E-value=51 Score=23.79 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=33.5
Q ss_pred eeeEEEECCCCc--hhHHHHHHHHhccCCcEEccccCCCCCCCcc
Q psy8570 13 VCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTAGGLVANFELKF 55 (159)
Q Consensus 13 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~~~~~~~l~~~~ 55 (159)
+++..|+||.-- ...+.+..+...+|+|.+..++....+.++.
T Consensus 36 krPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~ 80 (170)
T COG1880 36 KRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRG 80 (170)
T ss_pred CCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcc
Confidence 457789999864 5566688899999999998887776666654
No 160
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=35.96 E-value=56 Score=24.45 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=27.8
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
.+.+|.||..+.-+.....++..++++++..|.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~ 35 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGA 35 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCch
Confidence 368999999998888888888999999887663
No 161
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=35.62 E-value=1.8e+02 Score=21.36 Aligned_cols=94 Identities=12% Similarity=0.013 Sum_probs=53.5
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++|+|--++......+. .+...++|+|..+.... . . ....+...+...+...++.+...|-++++++..
T Consensus 53 ~~~vdgiii~~~~~~~~~~~-~~~~~~ipvv~~~~~~~---~-~---~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~ 124 (268)
T cd01575 53 SRRPAGLILTGLEHTERTRQ-LLRAAGIPVVEIMDLPP---D-P---IDMAVGFSHAEAGRAMARHLLARGYRRIGFLGA 124 (268)
T ss_pred HcCCCEEEEeCCCCCHHHHH-HHHhcCCCEEEEecCCC---C-C---CCCeEEeCcHHHHHHHHHHHHHCCCCcEEEecC
Confidence 35677766422222222333 34456999997653211 1 1 112345566666777777777778889999975
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+ ......+.+++.+.+++.+
T Consensus 125 ~~~------~~~~~~r~~gf~~~l~~~~ 146 (268)
T cd01575 125 RMD------DTRAQQRLEGFRAALRAAG 146 (268)
T ss_pred CCC------cccHHHHHHHHHHHHHHcC
Confidence 432 1234456777777777653
No 162
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=35.61 E-value=2e+02 Score=22.24 Aligned_cols=102 Identities=8% Similarity=0.006 Sum_probs=59.1
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccc------cCCCCCCCcc------cCCeeEEeeCChhhHHHHHHHHHH-H
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG------GLVANFELKF------EYPTLTRMMGSFSLVGQAVQSILK-N 80 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~------~~~~~l~~~~------~~~~~~r~~p~~~~~~~a~~~ll~-~ 80 (159)
++.--+=|+-|......|.+-..+.+|-++.. +.-.....+. ......-+..+-..+.+.+-+|+. +
T Consensus 103 gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vpe~e~l~~la~~~aTm~I~L~v~~I~~vv~~L~~g~ 182 (254)
T COG2875 103 GIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTPVPEKESLAALAKHGATMVIFLGVHAIDKVVEELLEGG 182 (254)
T ss_pred CCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccccCCCCCchhHHHHHHhcCceeEeeehhhHHHHHHHHHhcCC
Confidence 33334456666666677777777888854322 1111111111 122333445566667788888888 8
Q ss_pred cCCc-EEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 81 FNWT-VAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 81 f~W~-~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
|+|. -|+++|..+= .++.-..-+++++.+..++.+
T Consensus 183 y~~dtPVaVV~rAsW----pDe~ii~GTL~dIa~kv~~~~ 218 (254)
T COG2875 183 YPPDTPVAVVYRASW----PDEKIIRGTLEDIAEKVKEAG 218 (254)
T ss_pred CCCCCCEEEEEecCC----CcccEEEeeHHHHHHHHHhcC
Confidence 8884 6888887652 234334456777877777764
No 163
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=35.57 E-value=62 Score=25.56 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=33.8
Q ss_pred HHHHHHHhccCCcEEccccC-C--CCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 28 APVARYSGVWGIPVLTAGGL-V--ANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 28 ~~va~~~~~~~iP~is~~~~-~--~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..++.+...+-+-+|..-+. . +.+.+. | ..|+-..++..+..++.||+++.|.-+..
T Consensus 47 ~~m~~i~~~f~i~Hi~aPGqe~ga~~~p~~--y-----~yPsmd~LAe~l~~Vl~~f~lk~vIg~Gv 106 (283)
T PF03096_consen 47 EDMQEILQNFCIYHIDAPGQEEGAATLPEG--Y-----QYPSMDQLAEMLPEVLDHFGLKSVIGFGV 106 (283)
T ss_dssp HHHHHHHTTSEEEEEE-TTTSTT-----TT------------HHHHHCTHHHHHHHHT---EEEEEE
T ss_pred hhHHHHhhceEEEEEeCCCCCCCccccccc--c-----cccCHHHHHHHHHHHHHhCCccEEEEEee
Confidence 45778888888888864332 2 222222 2 35688899999999999999999877654
No 164
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.45 E-value=1.9e+02 Score=21.40 Aligned_cols=92 Identities=15% Similarity=0.033 Sum_probs=53.6
Q ss_pred ceeeEEE-ECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEEE
Q psy8570 12 VVCVDAF-LGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAGF 88 (159)
Q Consensus 12 ~~~v~ai-iGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~~ 88 (159)
..+++++ +.|.........-..+...++|+|..+.... + ....+...+...++..++.+... |.+++++
T Consensus 55 ~~~~dgiIi~~~~~~~~~~~i~~~~~~~ipvv~~~~~~~---~-----~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~ 126 (271)
T cd06321 55 AAKVDLILLNAVDSKGIAPAVKRAQAAGIVVVAVDVAAE---G-----ADATVTTDNVQAGEISCQYLADRLGGKGNVAI 126 (271)
T ss_pred HhCCCEEEEeCCChhHhHHHHHHHHHCCCeEEEecCCCC---C-----ccceeeechHHHHHHHHHHHHHHhCCCceEEE
Confidence 3455543 4554433223333444557899999875322 1 11245566666666667766666 9999999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
+..... .....+.++..+.+++.
T Consensus 127 i~g~~~-------~~~~~R~~g~~~~~~~~ 149 (271)
T cd06321 127 LNGPPV-------SAVLDRVAGCKAALAKY 149 (271)
T ss_pred EeCCCC-------chHHHHHHHHHHHHHhC
Confidence 975432 12445667777777665
No 165
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=34.31 E-value=62 Score=22.42 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=25.9
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++++.|+..|.-+.....++..+++|++..+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~ 32 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAG 32 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHH
Confidence 4678899999888777788888999998754
No 166
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=33.75 E-value=60 Score=22.03 Aligned_cols=30 Identities=10% Similarity=0.093 Sum_probs=24.7
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++++||..+.-+.....++..++.|.++..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 468899999888888888889999988654
No 167
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=33.70 E-value=1.5e+02 Score=20.19 Aligned_cols=65 Identities=5% Similarity=0.072 Sum_probs=34.3
Q ss_pred EEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHH-HHHhcCceEEEeee
Q psy8570 85 VAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQL-IAITKRARIIKSLD 157 (159)
Q Consensus 85 ~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L-~~~~~~aRIii~~~ 157 (159)
+|-++|+.|. ......+.+|.+.++...++.+ ..=.++.......+..+.+ +.+++..+|||+|.
T Consensus 2 kVfI~Ys~d~-------~~h~~~V~~la~~L~~~~g~~V-~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 2 KVFISYSHDS-------EEHKEWVLALAEFLRQNCGIDV-ILDQWELNEIARQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred eEEEEeCCCC-------HHHHHHHHHHHHHHHhccCCce-eecHHhhcccccCCHHHHHHHHHhcCCEEEEEec
Confidence 6778887764 2355667788888888722222 1111111000122334433 34556678888886
No 168
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=33.40 E-value=38 Score=22.47 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=24.0
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEE
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVL 42 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~i 42 (159)
++++||.-.+....+...+...++|+-
T Consensus 51 vvLlGPQv~y~~~~~~~~~~~~giPV~ 77 (102)
T COG1440 51 VVLLGPQVRYMLKQLKEAAEEKGIPVE 77 (102)
T ss_pred EEEEChHHHHHHHHHHHHhcccCCCeE
Confidence 467899999999999999999999974
No 169
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.18 E-value=2e+02 Score=21.17 Aligned_cols=92 Identities=9% Similarity=-0.063 Sum_probs=52.8
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|...+.... +......-++|++..+..... ..+ ..+.+.+...+...+..+..-|-++++++..
T Consensus 54 ~~~~dgiii~~~~~~~--~~~~~~~~~ipvv~~~~~~~~----~~~---~~v~~d~~~~~~~a~~~l~~~g~~~i~~l~~ 124 (269)
T cd06288 54 DHRVDGIIYATMYHRE--VTLPPELLSVPTVLLNCYDAD----GAL---PSVVPDEEQGGYDATRHLLAAGHRRIAFING 124 (269)
T ss_pred HcCCCEEEEecCCCCh--hHHHHHhcCCCEEEEecccCC----CCC---CeEEEccHHHHHHHHHHHHHcCCceEEEEeC
Confidence 3467777765443221 122334468999887643221 122 3466677777777777666668899999975
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
.... .....+.++..+.+++.
T Consensus 125 ~~~~------~~~~~R~~gf~~~~~~~ 145 (269)
T cd06288 125 EPWM------LAAKDRLKGYRQALAEA 145 (269)
T ss_pred Cccc------hhHHHHHHHHHHHHHHc
Confidence 4321 12234566666666654
No 170
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.14 E-value=2e+02 Score=21.28 Aligned_cols=94 Identities=4% Similarity=-0.087 Sum_probs=51.0
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|--++......+...+...++|+|..+.... ...+ .....+..-++..+..+...|-++++++..
T Consensus 53 ~~~vdgii~~~~~~~~~~~~~~~~~~~ipvV~i~~~~~-----~~~~---~V~~d~~~~g~~a~~~l~~~G~~~i~~l~~ 124 (269)
T cd06281 53 QRRMDGIIIAPGDERDPELVDALASLDLPIVLLDRDMG-----GGAD---AVLFDHAAGMRQAVEYLISLGHRRIALVGG 124 (269)
T ss_pred HcCCCEEEEecCCCCcHHHHHHHHhCCCCEEEEecccC-----CCCC---EEEECcHHHHHHHHHHHHHCCCcEEEEecC
Confidence 34666666322222223344555567899998875432 1122 244444444455555555568899998865
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.... .....+.+++.+.+++.+
T Consensus 125 ~~~~------~~~~~R~~Gf~~~~~~~~ 146 (269)
T cd06281 125 GSNT------RPGRERLEGYKAAFAAAG 146 (269)
T ss_pred cccc------ccHHHHHHHHHHHHHHcC
Confidence 4321 123345667777776653
No 171
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=33.11 E-value=57 Score=24.79 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=42.4
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCe-eEEeeCChhhHHHHHHHHHHHcCCcEE
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPT-LTRMMGSFSLVGQAVQSILKNFNWTVA 86 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~-~~r~~p~~~~~~~a~~~ll~~f~W~~v 86 (159)
-++||=||+.+.=+...-.+|..++.+.+..|..=..+ .+ .++...+. .-..++..++.+..|.-.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~------a~~~l~~~~~~-~d~~~~~~l~~~~~i~f~ 71 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV------ALAALKHGVDL-DDEDALVALAKELDISFV 71 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH------HHHHHHcCCCC-ccHHHHHHHHHhCCceec
Confidence 46789999999888777889999999999887531100 00 01111111 125577888888777643
No 172
>PRK08611 pyruvate oxidase; Provisional
Probab=33.05 E-value=68 Score=27.67 Aligned_cols=33 Identities=9% Similarity=0.008 Sum_probs=28.4
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++++.++|..+......+..++..+++|+++..
T Consensus 204 krPvil~G~g~~~a~~~l~~lae~~~~PV~tt~ 236 (576)
T PRK08611 204 KKPVILAGLGAKHAKEELLAFAEKAKIPIIHTL 236 (576)
T ss_pred CCcEEEECcCcchHHHHHHHHHHHhCCCEEEcc
Confidence 678999999887777789999999999999643
No 173
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=32.72 E-value=66 Score=23.53 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=24.8
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
..+++.||..|.=+.....++..++.|+++..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 35889999999887666666676799999654
No 174
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=32.54 E-value=57 Score=22.71 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=20.2
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEE
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVL 42 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~i 42 (159)
++|.|+.|+.=+..+..++.. +.|.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 578999999988888899988 99988
No 175
>PLN02840 tRNA dimethylallyltransferase
Probab=32.44 E-value=71 Score=26.74 Aligned_cols=36 Identities=11% Similarity=-0.065 Sum_probs=30.0
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
.+..+++|.||..+.=+...-.++..++.++|+..+
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 345688999999999998888999999988876543
No 176
>KOG0025|consensus
Probab=32.23 E-value=2.1e+02 Score=23.13 Aligned_cols=47 Identities=21% Similarity=0.158 Sum_probs=35.0
Q ss_pred eeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 59 TLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 59 ~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
++++-.. .+..++++.++.+++|.+.+.+|-..++ +++|.+.++..+
T Consensus 163 ~vIQNga-nS~VG~~ViQlaka~GiktinvVRdR~~-------------ieel~~~Lk~lG 209 (354)
T KOG0025|consen 163 SVIQNGA-NSGVGQAVIQLAKALGIKTINVVRDRPN-------------IEELKKQLKSLG 209 (354)
T ss_pred eeeecCc-ccHHHHHHHHHHHHhCcceEEEeecCcc-------------HHHHHHHHHHcC
Confidence 4455443 4567899999999999999999976553 567777777765
No 177
>PRK04182 cytidylate kinase; Provisional
Probab=31.86 E-value=73 Score=22.23 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=25.6
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
++++.|+..+.-+.....++..+++|++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 568889999988888888889999999974
No 178
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.36 E-value=2.1e+02 Score=21.00 Aligned_cols=91 Identities=16% Similarity=0.081 Sum_probs=49.4
Q ss_pred ceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 12 VVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..+++++| -|. ......+..+. -++|+|..+..... .. +..+...+..-+...++.|..-|-++++++.
T Consensus 53 ~~~~dgiii~~~-~~~~~~~~~~~--~~iPvV~i~~~~~~----~~---~~~V~~d~~~a~~~~~~~l~~~g~~~i~~i~ 122 (265)
T cd06290 53 SRRVDALILLGG-DLPEEEILALA--EEIPVLAVGRRVPG----PG---AASIAVDNFQGGYLATQHLIDLGHRRIAHIT 122 (265)
T ss_pred HCCCCEEEEeCC-CCChHHHHHHh--cCCCEEEECCCcCC----CC---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 34566665 332 22223333332 38999988753221 11 2234556656666666655555889999886
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
...+ ......+.++..+.+.+.
T Consensus 123 ~~~~------~~~~~~r~~gf~~~~~~~ 144 (265)
T cd06290 123 GPRG------HIDARDRLAGYRKALEEA 144 (265)
T ss_pred Cccc------cchhhHHHHHHHHHHHHc
Confidence 5422 122344566776666654
No 179
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.80 E-value=2.2e+02 Score=21.01 Aligned_cols=94 Identities=9% Similarity=-0.062 Sum_probs=54.0
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|--.+......+..+.. .++|+|..+..... ... ....+.+...+...++.|..-|-++++++..
T Consensus 53 ~~~~dgiii~~~~~~~~~~~~~~~-~~~pvV~i~~~~~~----~~~---~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~ 124 (269)
T cd06293 53 TNHVDGLIFVTNRPDDGALAKLIN-SYGNIVLVDEDVPG----AKV---PKVFCDNEQGGRLATRHLARAGHRRIAFVGG 124 (269)
T ss_pred HCCCCEEEEeCCCCCHHHHHHHHh-cCCCEEEECCCCCC----CCC---CEEEECCHHHHHHHHHHHHHCCCceEEEEec
Confidence 456777774333322233333332 47999987653221 111 2355667667777777776679999999965
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.... .....+.++..+.+.+.+
T Consensus 125 ~~~~------~~~~~R~~Gf~~a~~~~~ 146 (269)
T cd06293 125 PDAL------ISARERYAGYREALAEAH 146 (269)
T ss_pred Cccc------ccHHHHHHHHHHHHHHcC
Confidence 4321 123345677777776653
No 180
>PRK08266 hypothetical protein; Provisional
Probab=30.10 E-value=79 Score=26.94 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=28.4
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++++.++|..+......+..++..+++|+++..
T Consensus 206 krPvIv~G~g~~~a~~~l~~lae~~g~pv~tt~ 238 (542)
T PRK08266 206 KNPMIFVGGGAAGAGEEIRELAEMLQAPVVAFR 238 (542)
T ss_pred CCCEEEECCChhhHHHHHHHHHHHHCCCEEEec
Confidence 678899999988778889999999999999643
No 181
>PRK07524 hypothetical protein; Provisional
Probab=30.10 E-value=75 Score=27.04 Aligned_cols=34 Identities=12% Similarity=-0.090 Sum_probs=28.9
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
++++.++|..+......+..++..+++|+++...
T Consensus 202 krPvil~G~g~~~a~~~l~~lae~l~~pV~tt~~ 235 (535)
T PRK07524 202 RRPLILAGGGALAAAAALRALAERLDAPVALTIN 235 (535)
T ss_pred CCcEEEECCChHHHHHHHHHHHHHHCCCEEEccc
Confidence 5688899999987788899999999999996543
No 182
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=29.25 E-value=78 Score=25.19 Aligned_cols=33 Identities=6% Similarity=0.011 Sum_probs=26.2
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++++++|+||+.+.=+...-.+|.. +-.+|+.-
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaD 35 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVD 35 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-CCcEEecc
Confidence 4568999999999888888888888 55777643
No 183
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=29.18 E-value=2.3e+02 Score=20.71 Aligned_cols=94 Identities=9% Similarity=-0.034 Sum_probs=51.6
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..++++++=-.+......+ ..+...++|+|..+..... ... ......+...+...++.+..-|-++++++..
T Consensus 53 ~~~~dgiii~~~~~~~~~l-~~~~~~~ipvV~~~~~~~~----~~~---~~v~~d~~~~g~~~~~~l~~~g~~~i~~l~~ 124 (267)
T cd06283 53 AYQVDGLIVNPTGNNKELY-QRLAKNGKPVVLVDRKIPE----LGV---DTVTLDNYEAAKEAVDHLIEKGYERILFVTE 124 (267)
T ss_pred HcCcCEEEEeCCCCChHHH-HHHhcCCCCEEEEcCCCCC----CCC---CEEEeccHHHHHHHHHHHHHcCCCcEEEEec
Confidence 3466665522222222233 3345679999988754221 112 2344455556666777776668889999865
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
.... ......+.+++.+.+++.
T Consensus 125 ~~~~-----~~~~~~r~~g~~~~~~~~ 146 (267)
T cd06283 125 PLDE-----ISPRMERYEGFKEALAEH 146 (267)
T ss_pred Cccc-----cccHHHHHHHHHHHHHHc
Confidence 4320 122345666777777654
No 184
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=29.17 E-value=74 Score=27.60 Aligned_cols=33 Identities=18% Similarity=-0.006 Sum_probs=28.4
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++++.++|..+......+..++..+++|+++..
T Consensus 209 krPvi~~G~g~~~a~~~l~~lae~~~~PV~tt~ 241 (597)
T PRK08273 209 RKVAILVGAGALGATDEVIAVAERLGAGVAKAL 241 (597)
T ss_pred CCEEEEECcchHhHHHHHHHHHHHhCCceeecc
Confidence 568889999988778889999999999999654
No 185
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=28.99 E-value=51 Score=24.28 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=21.1
Q ss_pred eeeEEEECCCCchhHHHHHHHHhcc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVW 37 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~ 37 (159)
+++.+++||.-..=+.++|.+|..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 3688999999998888888888765
No 186
>PRK13946 shikimate kinase; Provisional
Probab=28.69 E-value=85 Score=22.51 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=28.0
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+.++.++++|+..+.=+..-..++..+++|.+..-
T Consensus 8 ~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 8 LGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 45667899999888888777788889999988543
No 187
>PRK12753 transketolase; Reviewed
Probab=28.36 E-value=2.4e+02 Score=25.08 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=41.0
Q ss_pred ceeeEEEECCCCc--hhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570 12 VVCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM 89 (159)
Q Consensus 12 ~~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i 89 (159)
.+.+.+++|.++. ..+-....+|+.|++|-+-.-...+..+-.. |........+.+.++-|||+.+..+
T Consensus 146 ~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~---------~~~~~~~~~~~~~f~a~Gw~~~~~v 216 (663)
T PRK12753 146 DHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDG---------ETEGWFTDDTAKRFEAYHWHVIHEI 216 (663)
T ss_pred CCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCC---------ChhhhcChhHHHHHHHcCCeEEcee
Confidence 4678999998874 4555578899999998543222222211000 0011112456788899999866433
No 188
>PRK13947 shikimate kinase; Provisional
Probab=28.31 E-value=84 Score=21.89 Aligned_cols=30 Identities=7% Similarity=-0.013 Sum_probs=24.5
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++++||+.+.=+..-..++..++.|.+...
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 678899888877777778899999998654
No 189
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=27.90 E-value=93 Score=18.40 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=11.9
Q ss_pred HHHHHHHhcCceEEEeeeC
Q psy8570 140 KEQLIAITKRARIIKSLDA 158 (159)
Q Consensus 140 ~~~L~~~~~~aRIii~~~~ 158 (159)
.+.+++.....+|||++|+
T Consensus 38 ~~~l~~~~~~~~Iii~~D~ 56 (76)
T smart00493 38 IKLLKRLAKKKEVILATDP 56 (76)
T ss_pred HHHHHHHhcCCEEEEEcCC
Confidence 3455544333679999986
No 190
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=27.84 E-value=80 Score=27.18 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=27.8
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++++.++|..+......+..++..+++|+++..
T Consensus 202 krPvii~G~g~~~a~~~l~~lae~l~~PV~tt~ 234 (574)
T PRK09124 202 SNITLLCGSGCAGAHDELVALAETLKAPIVHAL 234 (574)
T ss_pred CCCEEEECcChHhHHHHHHHHHHHhCCceEEcc
Confidence 568889999887777788999999999999643
No 191
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=27.25 E-value=90 Score=26.72 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=27.7
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
++++.++|..+......+..++..+++|+++.
T Consensus 196 krPvii~G~g~~~a~~~l~~lAe~~~~PV~tt 227 (549)
T PRK06457 196 EKPVLLIGGGTRGLGKEINRFAEKIGAPIIYT 227 (549)
T ss_pred CCcEEEECcchhhHHHHHHHHHHHHCCCEEEc
Confidence 67889999988777788999999999999864
No 192
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=27.10 E-value=1.2e+02 Score=19.33 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=10.9
Q ss_pred HHHHHHHhcCceEEEeeeC
Q psy8570 140 KEQLIAITKRARIIKSLDA 158 (159)
Q Consensus 140 ~~~L~~~~~~aRIii~~~~ 158 (159)
..+.+.+++..+||+++|+
T Consensus 51 ~~l~~~~~~~~~iiiatD~ 69 (100)
T PF01751_consen 51 KNLKKLLKKADEIIIATDP 69 (100)
T ss_dssp HHHHHHHHSCSEEEEEC-S
T ss_pred hhhHHHhhhccEeeecCCC
Confidence 3344444556788888886
No 193
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.40 E-value=93 Score=25.49 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=46.6
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCc----EEEEEEE
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWT----VAGFMFN 91 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~----~v~~i~~ 91 (159)
+.++||.-|.-+.....+|..+|+|.--.-++ +++--..--.+.-..+++||+.=+|. .-++||-
T Consensus 100 ILLiGPTGsGKTlLAqTLAk~LnVPFaiADAT-----------tLTEAGYVGEDVENillkLlqaadydV~rAerGIIyI 168 (408)
T COG1219 100 ILLIGPTGSGKTLLAQTLAKILNVPFAIADAT-----------TLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYI 168 (408)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCeeecccc-----------chhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEE
Confidence 57899999999988999999999997543332 23333333445667788888876664 3567776
Q ss_pred eC
Q psy8570 92 NY 93 (159)
Q Consensus 92 ~~ 93 (159)
+.
T Consensus 169 DE 170 (408)
T COG1219 169 DE 170 (408)
T ss_pred ec
Confidence 54
No 194
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=26.36 E-value=1.1e+02 Score=22.50 Aligned_cols=34 Identities=9% Similarity=-0.071 Sum_probs=27.4
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+..++.+.|++++.-+.....++...+++.+..+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~ 35 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSG 35 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehh
Confidence 3557889999999888888889999998887544
No 195
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=25.89 E-value=1.3e+02 Score=22.82 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhc-CceEEEeeeC
Q psy8570 137 EKLKEQLIAITK-RARIIKSLDA 158 (159)
Q Consensus 137 ~~~~~~L~~~~~-~aRIii~~~~ 158 (159)
..+.+..+++++ ..+|++++||
T Consensus 130 pai~eqi~~~~~~y~kIfvilDs 152 (237)
T COG3510 130 PAIAEQIRRLKNEYPKIFVILDS 152 (237)
T ss_pred HHHHHHHHHHhcCCCcEEEEecC
Confidence 345566666665 4689999997
No 196
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=25.88 E-value=1.1e+02 Score=21.11 Aligned_cols=33 Identities=9% Similarity=-0.197 Sum_probs=26.5
Q ss_pred ccceeeEEEECCCCchhHHHHHHHHhccCCcEE
Q psy8570 10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVL 42 (159)
Q Consensus 10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~i 42 (159)
.+..++.+++++.|.++|+.++..++.++...+
T Consensus 88 ~~~~~v~vL~~~~t~Saae~fa~~lk~~~~~~i 120 (169)
T PF03572_consen 88 RFNGPVYVLTDENTASAAEIFASALKDNKRATI 120 (169)
T ss_dssp -SSSEEEEEE-TTBBTHHHHHHHHHHHTTSEEE
T ss_pred cCCCCEEEEeCCCCCChhHHHHHHHHhcCCCeE
Confidence 367789999999999999999999988875544
No 197
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=25.32 E-value=1.4e+02 Score=22.52 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=26.5
Q ss_pred EEEeeeccceeeEEEECCCCchhHHHHHHHHhccCCcE
Q psy8570 4 LCFYRTGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPV 41 (159)
Q Consensus 4 ~~~~~~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~ 41 (159)
+||=-+.-....+||+||+-+.-+....-+|+ +..|+
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAG-F~~P~ 52 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAG-FETPA 52 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHHHh-ccCCC
Confidence 56666777788999999998877766655554 44454
No 198
>COG4678 Muramidase (phage lambda lysozyme) [Carbohydrate transport and metabolism]
Probab=24.95 E-value=28 Score=25.22 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=45.5
Q ss_pred eeeccceeeEEEECC--CCchhHHHHHHHHhccC--CcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC
Q psy8570 7 YRTGFVVCVDAFLGP--VCDYVIAPVARYSGVWG--IPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN 82 (159)
Q Consensus 7 ~~~~~~~~v~aiiGp--~~s~~~~~va~~~~~~~--iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~ 82 (159)
|++.-...|.+..|| .||.++..-.-+...|. -|+.-.--+++...|+-.|..+-++-....-++--+-+.+++-+
T Consensus 67 ~S~HP~~~v~i~~~~ng~cSTAAGrYQ~L~~tW~~~~~~l~l~dF~P~~QD~va~~~i~d~~al~~i~aG~i~qal~k~s 146 (180)
T COG4678 67 LSDHPRKCVTIPTGPNGLCSTAAGRYQLLNRTWDDYAPQLHLKDFSPESQDAVAYRWIRDRDALADIQAGRIDQALRKLS 146 (180)
T ss_pred hhhCChhhEEeecCCCCccccchhhHHHHHhHHHHhhhhcCcccCChhhhhHHHHHHHHhcChHhHHhcccHHHHHHHhc
Confidence 445556667888899 89888877777777763 33332222333333433344433333333333333455556655
Q ss_pred CcEEEEEEE
Q psy8570 83 WTVAGFMFN 91 (159)
Q Consensus 83 W~~v~~i~~ 91 (159)
=+|..+...
T Consensus 147 ~~WaSL~g~ 155 (180)
T COG4678 147 NTWASLYGI 155 (180)
T ss_pred chhhccccc
Confidence 556666433
No 199
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=24.94 E-value=1.2e+02 Score=26.32 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=27.8
Q ss_pred eeeEEEECCCC--chhHHHHHHHHhccCCcEEcccc
Q psy8570 13 VCVDAFLGPVC--DYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 13 ~~v~aiiGp~~--s~~~~~va~~~~~~~iP~is~~~ 46 (159)
++++.++|..+ +.....+..++..+++|+++...
T Consensus 218 krPvil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~ 253 (585)
T CHL00099 218 SQPLLYVGGGAIISDAHQEITELAELYKIPVTTTLM 253 (585)
T ss_pred CCcEEEECCCCchhchHHHHHHHHHHHCCCEEEccc
Confidence 56888999998 46677789999999999996443
No 200
>PRK12474 hypothetical protein; Provisional
Probab=24.34 E-value=1.3e+02 Score=25.51 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=25.3
Q ss_pred eeeEEEECCCCc--hhHHHHHHHHhccCCcEEcc
Q psy8570 13 VCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 13 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~ 44 (159)
++++.++|..+. .....+..++..+++|+++.
T Consensus 202 ~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t 235 (518)
T PRK12474 202 KKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCD 235 (518)
T ss_pred CCcEEEECCccchhhHHHHHHHHHHHHCCCEEEe
Confidence 467888898875 45666889999999999853
No 201
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.02 E-value=3e+02 Score=20.29 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=52.6
Q ss_pred cceeeEEEECCCCchh-HHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEE
Q psy8570 11 FVVCVDAFLGPVCDYV-IAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAG 87 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~-~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~ 87 (159)
...+++++|--.+... ....-..+...++|+|....... +.. .+..+.+.+...+...++.+... |+++++
T Consensus 54 ~~~~vdgvii~~~~~~~~~~~l~~~~~~~ipvV~~~~~~~---~~~---~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~ 127 (273)
T cd06310 54 IARGPDAILLAPTDAKALVPPLKEAKDAGIPVVLIDSGLN---SDI---AVSFVATDNVAAGKLAAEALAELLGKKGKVA 127 (273)
T ss_pred HHhCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEecCCCC---CCc---ceEEEeeChHHHHHHHHHHHHHHcCCCceEE
Confidence 3456777664333322 12222333458999998764321 111 12234455555666666666555 899999
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
++....+. .....+.++..+.++..
T Consensus 128 ~i~~~~~~------~~~~~r~~gf~~a~~~~ 152 (273)
T cd06310 128 VISFVPGS------STTDQREEGFLEGLKEY 152 (273)
T ss_pred EEeCCCCC------ccHHHHHHHHHHHHHhC
Confidence 98643321 22344667777777665
No 202
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=23.99 E-value=71 Score=20.40 Aligned_cols=19 Identities=32% Similarity=0.749 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHcCCcEEE
Q psy8570 69 LVGQAVQSILKNFNWTVAG 87 (159)
Q Consensus 69 ~~~~a~~~ll~~f~W~~v~ 87 (159)
-+..|+.++|+-|.|+-|-
T Consensus 61 ~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 61 CIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred HHHHHHHHHhccCCceeee
Confidence 3678999999999998664
No 203
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.88 E-value=3e+02 Score=20.28 Aligned_cols=94 Identities=12% Similarity=0.036 Sum_probs=57.1
Q ss_pred eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570 9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF 88 (159)
Q Consensus 9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~ 88 (159)
.....+++|+|=...+. ... ......++|+|..+..... +.+.++...+...+...++.+...|-+++++
T Consensus 45 ~l~~~~vdGiI~~~~~~--~~~-~~l~~~~~PvV~~~~~~~~-------~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~ 114 (265)
T cd01543 45 WLKDWQGDGIIARIDDP--EMA-EALQKLGIPVVDVSGSREK-------PGIPRVTTDNAAIGRMAAEHFLERGFRHFAF 114 (265)
T ss_pred hccccccceEEEECCCH--HHH-HHHhhCCCCEEEEeCccCC-------CCCCEEeeCHHHHHHHHHHHHHHCCCcEEEE
Confidence 34456788777432221 122 3334568999988653211 1234566777777777777777778899998
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
+..... .....+.+++.+.+++.+
T Consensus 115 i~~~~~-------~~~~~R~~gf~~~~~~~~ 138 (265)
T cd01543 115 YGLPGA-------RWSDEREEAFRQLVAEAG 138 (265)
T ss_pred EcCCCC-------HHHHHHHHHHHHHHHHcC
Confidence 853321 234556777777777654
No 204
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.77 E-value=3e+02 Score=20.22 Aligned_cols=91 Identities=13% Similarity=0.060 Sum_probs=52.0
Q ss_pred ceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 12 VVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..+++++| .|... ....+ ..+...++|++..+.... .++ .+...+..-+...++.|..-|-++++++.
T Consensus 53 ~~~~dgiii~~~~~-~~~~~-~~~~~~~iPvv~~~~~~~------~~~---~V~~d~~~ag~~a~~~L~~~g~~~i~~i~ 121 (265)
T cd06285 53 DRRVDGLILGDARS-DDHFL-DELTRRGVPFVLVLRHAG------TSP---AVTGDDVLGGRLATRHLLDLGHRRIAVLA 121 (265)
T ss_pred HcCCCEEEEecCCC-ChHHH-HHHHHcCCCEEEEccCCC------CCC---EEEeCcHHHHHHHHHHHHHCCCccEEEEe
Confidence 44666555 55332 22333 344567999998764321 122 24445555566666666666888999987
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.... ......+.++..+.+++.+
T Consensus 122 ~~~~------~~~~~~R~~Gf~~~~~~~~ 144 (265)
T cd06285 122 GPDY------ASTARDRLAGFRAALAEAG 144 (265)
T ss_pred CCcc------cccHHHHHHHHHHHHHHcC
Confidence 5432 1224456777777777653
No 205
>PRK07064 hypothetical protein; Provisional
Probab=23.33 E-value=1.3e+02 Score=25.57 Aligned_cols=32 Identities=25% Similarity=0.142 Sum_probs=26.5
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++++.++|..+......+..++. +++|+++..
T Consensus 204 krPvi~~G~g~~~a~~~l~~lae-~~~pv~~t~ 235 (544)
T PRK07064 204 RRPLLWLGGGARHAGAEVKRLVD-LGFGVVTST 235 (544)
T ss_pred CCCEEEECCChHhHHHHHHHHHH-cCCCEEEcc
Confidence 57889999988766677889999 999999643
No 206
>PF03283 PAE: Pectinacetylesterase
Probab=23.32 E-value=4.1e+02 Score=21.65 Aligned_cols=78 Identities=9% Similarity=0.024 Sum_probs=40.0
Q ss_pred HcCCcEEEEEEEeCCCcCCCCC----------CchHhHHHHHHHHHcCCCCCCcceeeeeeccCCC----hHHHHHHHHH
Q psy8570 80 NFNWTVAGFMFNNYGQTTGKGN----------SNCWFTIASVYKIITSPSGSNDMKLESFDEETVT----PEKLKEQLIA 145 (159)
Q Consensus 80 ~f~W~~v~~i~~~~~~~~~~~~----------~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~----~~~~~~~L~~ 145 (159)
.++|+.|.+-|-+.+.+.+..+ ..+...++++.+.+...+ .-....+.+.-.+.. .-....+.+.
T Consensus 102 f~~wN~V~vpYC~Gd~~~G~~~~~~~~~~~l~frG~~i~~avl~~l~~~g-l~~a~~vlltG~SAGG~g~~~~~d~~~~~ 180 (361)
T PF03283_consen 102 FYNWNHVFVPYCDGDSHSGDVEPVDYGGTTLYFRGYRILRAVLDDLLSNG-LPNAKQVLLTGCSAGGLGAILHADYVRDR 180 (361)
T ss_pred cccccEEEEEecCCccccCcccccccCCceeEeecHHHHHHHHHHHHHhc-CcccceEEEeccChHHHHHHHHHHHHHHH
Confidence 4689999999988876643211 224455666666655542 122233333221100 0122223333
Q ss_pred HhcCceEEEeeeC
Q psy8570 146 ITKRARIIKSLDA 158 (159)
Q Consensus 146 ~~~~aRIii~~~~ 158 (159)
+...++|..+-||
T Consensus 181 lp~~~~v~~~~Ds 193 (361)
T PF03283_consen 181 LPSSVKVKCLSDS 193 (361)
T ss_pred hccCceEEEeccc
Confidence 3446788777776
No 207
>PRK06547 hypothetical protein; Provisional
Probab=23.16 E-value=1.3e+02 Score=21.60 Aligned_cols=33 Identities=6% Similarity=-0.089 Sum_probs=26.2
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
...+++|.||+.+.=+.....++...++|.++.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 345678889999988888888888888888753
No 208
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=22.67 E-value=1.5e+02 Score=25.35 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=28.2
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++++.++|..+......+..++..+++|+++..
T Consensus 222 krPvii~G~g~~~~~~~l~~lae~~g~PV~tt~ 254 (568)
T PRK07449 222 KRGVVIAGRLSAEEGQAIAALAQLLGWPLLADP 254 (568)
T ss_pred CCeEEEECCCChHHHHHHHHHHHHCCCeEEEec
Confidence 778999999997766889999999999998533
No 209
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=22.49 E-value=3.2e+02 Score=20.05 Aligned_cols=94 Identities=12% Similarity=0.014 Sum_probs=50.5
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..++++++=..+.........+....++|+|..+.... + ..++ .+...+...+...++.|..-|-++++++..
T Consensus 53 ~~~vdgiii~~~~~~~~~~~~l~~~~~ipvV~i~~~~~---~-~~~~---~V~~d~~~~~~~~~~~l~~~G~~~i~~i~~ 125 (269)
T cd06275 53 QKRVDGLLVMCSEYDQPLLAMLERYRHIPMVVMDWGPE---D-DFAD---KIQDNSEEGGYLATRHLIELGHRRIGCITG 125 (269)
T ss_pred HcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEecccC---C-CCCC---eEeeCcHHHHHHHHHHHHHCCCceEEEEeC
Confidence 34566554222222233334444456999998765322 1 1222 244455555666667666678899999864
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
..+ ......+.+++.+.+++.
T Consensus 126 ~~~------~~~~~~r~~gf~~~~~~~ 146 (269)
T cd06275 126 PLE------KAPAQQRLAGFRRAMAEA 146 (269)
T ss_pred CCC------CccHHHHHHHHHHHHHHc
Confidence 332 122344566677767654
No 210
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=22.25 E-value=3.3e+02 Score=20.07 Aligned_cols=95 Identities=5% Similarity=-0.032 Sum_probs=55.8
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
...+++++|--++......+.. +...++|+|........ ..++ .+...+...++..++.|..-+-++++++.
T Consensus 52 ~~~~vdgii~~~~~~~~~~~~~-~~~~~ipvV~~~~~~~~----~~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~i~ 123 (268)
T cd06270 52 LERRCDALILHSKALSDDELIE-LAAQVPPLVLINRHIPG----LADR---CIWLDNEQGGYLATEHLIELGHRKIACIT 123 (268)
T ss_pred HHcCCCEEEEecCCCCHHHHHH-HhhCCCCEEEEeccCCC----CCCC---eEEECcHHHHHHHHHHHHHCCCceEEEEe
Confidence 3456776664333322222333 34568999987643221 1122 24566666777777877777889999987
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.... ......+.+++.+.+++.+
T Consensus 124 ~~~~------~~~~~~R~~gf~~~~~~~~ 146 (268)
T cd06270 124 GPLT------KEDARLRLQGYRDALAEAG 146 (268)
T ss_pred CCcc------cccHHHHHHHHHHHHHHcC
Confidence 5432 1234456677777777653
No 211
>PRK05858 hypothetical protein; Provisional
Probab=22.18 E-value=1.5e+02 Score=25.37 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=26.5
Q ss_pred eeeEEEECCCCc--hhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~~ 45 (159)
++++.++|..+. .....+..++..+++|+++..
T Consensus 204 krPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~ 238 (542)
T PRK05858 204 QRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNG 238 (542)
T ss_pred CCcEEEECCCccccChHHHHHHHHHHhCCCEEEcC
Confidence 468888999774 556778999999999999543
No 212
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=22.16 E-value=1.5e+02 Score=25.47 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=26.1
Q ss_pred eeeEEEECCCCc--hhHHHHHHHHhccCCcEEcc
Q psy8570 13 VCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 13 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~ 44 (159)
++++.++|..+. .....+..++..+++|+++.
T Consensus 205 ~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt 238 (557)
T PRK08199 205 ERPLVILGGSGWTEAAVADLRAFAERWGLPVACA 238 (557)
T ss_pred CCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEc
Confidence 568889998763 45677899999999999964
No 213
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=22.02 E-value=3.8e+02 Score=20.71 Aligned_cols=94 Identities=11% Similarity=-0.012 Sum_probs=52.4
Q ss_pred ceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 12 VVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..+++++| -|... .....-..+...++|+|..+.... . ..++ .+...+..-+...++.|...|.++++++.
T Consensus 118 ~~~vdgiIi~~~~~-~~~~~~~~l~~~~iPvV~~~~~~~---~-~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 189 (342)
T PRK10014 118 NQGVDGVVIAGAAG-SSDDLREMAEEKGIPVVFASRASY---L-DDVD---TVRPDNMQAAQLLTEHLIRNGHQRIAWLG 189 (342)
T ss_pred hCCCCEEEEeCCCC-CcHHHHHHHhhcCCCEEEEecCCC---C-CCCC---EEEeCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 34566665 23222 222333445567999998754211 1 1222 24555666667777777777999999985
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..... .....+.++..+.+.+.+
T Consensus 190 g~~~~------~~~~~R~~Gf~~al~~~g 212 (342)
T PRK10014 190 GQSSS------LTRAERVGGYCATLLKFG 212 (342)
T ss_pred CCccc------ccHHHHHHHHHHHHHHcC
Confidence 43221 122345667777776653
No 214
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=21.86 E-value=95 Score=27.43 Aligned_cols=34 Identities=26% Similarity=0.232 Sum_probs=29.3
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccccC
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGL 47 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~ 47 (159)
.++++.||+.+.-+.....++..+++|++..+..
T Consensus 443 ~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~ 476 (661)
T PRK11860 443 PVICIDGPTASGKGTVAARVAEALGYHYLDSGAL 476 (661)
T ss_pred ceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHh
Confidence 3689999999999988889999999999876643
No 215
>PLN02470 acetolactate synthase
Probab=21.81 E-value=1.4e+02 Score=25.75 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=28.2
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
++++.++|..+......+..++..+++|+++...
T Consensus 216 ~rPvI~~G~g~~~a~~~l~~lae~~~~pv~tt~~ 249 (585)
T PLN02470 216 KRPVVYVGGGCLNSSEELREFVELTGIPVASTLM 249 (585)
T ss_pred CCCEEEECCChhhhHHHHHHHHHHhCCCEEEccC
Confidence 5688899998877778899999999999986544
No 216
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=21.43 E-value=1.5e+02 Score=25.30 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=27.0
Q ss_pred eeeEEEECCCCc--hhHHHHHHHHhccCCcEEcccc
Q psy8570 13 VCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 13 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~~~ 46 (159)
++++.++|..+. .....+..++..+++|+++...
T Consensus 197 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~ 232 (548)
T PRK08978 197 KKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLK 232 (548)
T ss_pred CCCEEEECCCccccchHHHHHHHHHHHCCCEEEccc
Confidence 578889999775 4456789999999999997543
No 217
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=21.38 E-value=1.6e+02 Score=21.38 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=22.5
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
.++++.||.++.=+.....++. +++|++...
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D 33 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDAD 33 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEec
Confidence 3688999998877655555555 899988654
No 218
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=21.36 E-value=1.3e+02 Score=25.87 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=30.1
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccC
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGL 47 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~ 47 (159)
...+++|.||+.+.-+.....++..++++.++.|..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~ 318 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM 318 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce
Confidence 456889999999998888888999999998876643
No 219
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=21.29 E-value=3.4e+02 Score=19.85 Aligned_cols=91 Identities=10% Similarity=0.043 Sum_probs=53.8
Q ss_pred ceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 12 VVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..++++++ .+... ....+.. ....++|+|..+.... +.+..+...+...+...++.+...|-++++++.
T Consensus 54 ~~~vdgiii~~~~~-~~~~~~~-~~~~~ipvv~~~~~~~--------~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~ 123 (264)
T cd01574 54 AQRVDGVIVNAPLD-DADAALA-AAPADVPVVFVDGSPS--------PRVSTVSVDQEGGARLATEHLLELGHRTIAHVA 123 (264)
T ss_pred hcCCCEEEEeCCCC-ChHHHHH-HHhcCCCEEEEeccCC--------CCCCEEEeCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 45677776 33222 2223333 3457899998875321 122345666667777777777777888999886
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
..... .....+.+++.+.+++.
T Consensus 124 ~~~~~------~~~~~r~~gf~~~l~~~ 145 (264)
T cd01574 124 GPEEW------LSARARLAGWRAALEAA 145 (264)
T ss_pred cCCcc------chHHHHHHHHHHHHHHC
Confidence 54321 12334567777777654
No 220
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=21.15 E-value=74 Score=21.81 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=23.2
Q ss_pred eeEEEECCCCchh----HHHHHHHHhccCCcEE
Q psy8570 14 CVDAFLGPVCDYV----IAPVARYSGVWGIPVL 42 (159)
Q Consensus 14 ~v~aiiGp~~s~~----~~~va~~~~~~~iP~i 42 (159)
.+.+++|.++..- |.++-.++..+++|.+
T Consensus 64 ~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~p~l 96 (125)
T TIGR00333 64 LLRGVAASGNKVWGDNFALAGDVISRKLNVPLL 96 (125)
T ss_pred cEEEEEEcCCCchHHHHHHHHHHHHHHhCCccE
Confidence 7889999998865 7777778888888654
No 221
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=21.15 E-value=1.5e+02 Score=25.80 Aligned_cols=34 Identities=18% Similarity=0.018 Sum_probs=27.3
Q ss_pred eeeEEEECCCCc--hhHHHHHHHHhccCCcEEcccc
Q psy8570 13 VCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 13 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~~~ 46 (159)
++++.++|..+. .....+..++..+++|+++...
T Consensus 225 krPvI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~ 260 (616)
T PRK07418 225 ERPLLYVGGGAISAGAHAELKELAERFQIPVTTTLM 260 (616)
T ss_pred CCCEEEECCCcCcccHHHHHHHHHHHHCCCEEEccC
Confidence 568888998885 5667788999999999996443
No 222
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=21.14 E-value=4e+02 Score=20.62 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=49.6
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++|+|--........+..+....++|+|..+...+. ..+. ....+....-+...++.|..-|-+++++|..
T Consensus 113 ~~~vdgiii~~~~~~~~~~~~l~~~~~iPvV~~d~~~~~----~~~~--~~v~~d~~~~g~~a~~~L~~~G~~~i~~i~~ 186 (341)
T PRK10703 113 QKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAK----ADFT--DAIIDNAFEGGYLAGRYLIERGHRDIGVIPG 186 (341)
T ss_pred HcCCCEEEEecCCCCHHHHHHHHhcCCCCEEEEecccCC----cCCC--CeEEECcHHHHHHHHHHHHHCCCCcEEEEeC
Confidence 346676652111222233444433369999977543211 1111 1234444444555555555558889999864
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+ ......+.++..+.+++.+
T Consensus 187 ~~~------~~~~~~R~~Gf~~~l~~~g 208 (341)
T PRK10703 187 PLE------RNTGAGRLAGFMKAMEEAN 208 (341)
T ss_pred Ccc------ccchHHHHHHHHHHHHHcC
Confidence 332 1234456677777776653
No 223
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=21.14 E-value=1.3e+02 Score=21.15 Aligned_cols=27 Identities=11% Similarity=-0.240 Sum_probs=21.8
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIP 40 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP 40 (159)
++.+++||..+.=+.....++..+.-.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~ 28 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccc
Confidence 578999999998888888888866443
No 224
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.05 E-value=1.5e+02 Score=25.60 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=29.8
Q ss_pred eeeEEEECCCCc--hhHHHHHHHHhccCCcEEccccCCCCCC
Q psy8570 13 VCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTAGGLVANFE 52 (159)
Q Consensus 13 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~~~~~~~l~ 52 (159)
++++.++|..+. .....+..++..+++|+++.......++
T Consensus 222 krPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~~~ 263 (587)
T PRK06965 222 KRPYIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYP 263 (587)
T ss_pred CCCEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCC
Confidence 568889999885 5567789999999999996544333333
No 225
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.95 E-value=3.4e+02 Score=19.84 Aligned_cols=93 Identities=11% Similarity=0.027 Sum_probs=50.6
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEeC
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNY 93 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~~ 93 (159)
+++++|--........+. .+...++|+|........ .+.+..+...+...++..++.+...+-++++++....
T Consensus 60 ~~dgiii~~~~~~~~~~~-~~~~~~ipvV~~~~~~~~------~~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~ 132 (270)
T cd06294 60 RVDGFILLYSREDDPIID-YLKEEKFPFVVIGKPEDD------KENITYVDNDNIQAGYDATEYLIKLGHKKIAFVGGDL 132 (270)
T ss_pred CcCEEEEecCcCCcHHHH-HHHhcCCCEEEECCCCCC------CCCCCeEEECcHHHHHHHHHHHHHcCCccEEEecCCc
Confidence 466554322221222233 345669999987643211 0112234445555666666666656888999996433
Q ss_pred CCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 94 GQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
. ......+.+++.+.+++.+
T Consensus 133 ~------~~~~~~r~~gf~~~~~~~~ 152 (270)
T cd06294 133 D------LEVTQDRLQGYKQALEDHG 152 (270)
T ss_pred c------cHHHHHHHHHHHHHHHHcC
Confidence 2 1224456777778777653
No 226
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=20.91 E-value=1.4e+02 Score=25.85 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=28.4
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
++++.++|-.+......+..++..+++|+++...
T Consensus 201 krPvil~G~g~~~a~~~l~~lae~l~~PV~tt~~ 234 (575)
T TIGR02720 201 ERPVIYYGIGARKAGEELEALSEKLKIPLISTGL 234 (575)
T ss_pred CCcEEEECcchhhHHHHHHHHHHHhCCCEEEccc
Confidence 5788899999887777899999999999996443
No 227
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=20.90 E-value=1.6e+02 Score=17.33 Aligned_cols=23 Identities=9% Similarity=-0.059 Sum_probs=17.7
Q ss_pred eEEEECCCCchhHHHHHHHHhcc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVW 37 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~ 37 (159)
+.++.|+..+.-+.....++..+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 35788999998877777777773
No 228
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=20.88 E-value=3.4e+02 Score=19.79 Aligned_cols=91 Identities=8% Similarity=0.033 Sum_probs=52.6
Q ss_pred ceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 12 VVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..+++++| -|. ......+..+.. .+ |++....... ... -.+.+.+...+...+..|..-|-++++++.
T Consensus 53 ~~~vdgiii~~~-~~~~~~~~~~~~-~~-pvv~~~~~~~-----~~~---~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~ 121 (260)
T cd06286 53 TKQVDGLILCSR-ENDWEVIEPYTK-YG-PIVLCEEYDS-----KNI---SSVYIDHYEAFYEALKYLIQKGYRKIAYCI 121 (260)
T ss_pred HcCCCEEEEeCC-CCCHHHHHHHhc-CC-CEEEEecccC-----CCC---CEEEECChHHHHHHHHHHHHCCCceEEEEc
Confidence 44666555 333 222334444444 34 8886553211 122 245666667777777777777889999996
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.+.+ ......+.+++.+.+++.+
T Consensus 122 ~~~~------~~~~~~R~~Gf~~~l~~~~ 144 (260)
T cd06286 122 GRKK------SLNSQSRKKAYKDALEEYG 144 (260)
T ss_pred CCcc------cchhHHHHHHHHHHHHHcC
Confidence 5432 1234556777777777653
No 229
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=20.71 E-value=3.6e+02 Score=19.92 Aligned_cols=95 Identities=9% Similarity=0.029 Sum_probs=53.4
Q ss_pred cceeeEEEE-CCCCchh---HHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEE
Q psy8570 11 FVVCVDAFL-GPVCDYV---IAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVA 86 (159)
Q Consensus 11 ~~~~v~aii-Gp~~s~~---~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v 86 (159)
...+++++| -|..+.. ....-.-+...++|+|..+..... +.+..+...+..-+...++.+..-|.+++
T Consensus 52 ~~~~vdgii~~~~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~G~~~i 124 (273)
T cd01541 52 LSQGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFINASYEE-------LNFPSLVLDDEKGGYKATEYLIELGHRKI 124 (273)
T ss_pred HHcCCCEEEEeccccccccccHHHHHHHHHCCCCEEEEecCCCC-------CCCCEEEECcHHHHHHHHHHHHHcCCcCE
Confidence 345677665 4432211 112223345568999987643211 11234556666667777777777799999
Q ss_pred EEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 87 GFMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
+++...+. .....+.+++.+.++..+
T Consensus 125 ~~l~~~~~-------~~~~~r~~g~~~~l~~~~ 150 (273)
T cd01541 125 AGIFKADD-------LQGVKRMKGFIKAYREHG 150 (273)
T ss_pred EEecCCCc-------ccHHHHHHHHHHHHHHcC
Confidence 98864332 123345667777776543
No 230
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=20.67 E-value=1.6e+02 Score=22.39 Aligned_cols=55 Identities=11% Similarity=0.147 Sum_probs=38.5
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCC
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNW 83 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W 83 (159)
...++.||+.+.=.+++-.++..++.+.+...|.... +...+++.+..+.+-=-|
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~---------------~~~~l~ril~G~~~~GaW 87 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM---------------DYQSLSRILKGLAQSGAW 87 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS----------------HHHHHHHHHHHHHHT-E
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc---------------cHHHHHHHHHHHhhcCch
Confidence 3457899999999999999999999999988774321 233456666666666555
No 231
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.64 E-value=1.7e+02 Score=25.33 Aligned_cols=34 Identities=12% Similarity=-0.033 Sum_probs=26.9
Q ss_pred eeeEEEECCCCc--hhHHHHHHHHhccCCcEEcccc
Q psy8570 13 VCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 13 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~~~ 46 (159)
++++.++|..+. .....+..++..+++|+++...
T Consensus 215 ~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~ 250 (570)
T PRK06725 215 KRPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLM 250 (570)
T ss_pred CCcEEEECCCccccchHHHHHHHHHHhCCCEEECCc
Confidence 468888898875 4567789999999999996443
No 232
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.49 E-value=4.6e+02 Score=21.08 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHhc-CceEEEe
Q psy8570 135 TPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 135 ~~~~~~~~L~~~~~-~aRIii~ 155 (159)
.++.|.++++.+++ .+++++.
T Consensus 144 ~~d~y~~li~~~~~~g~~vilD 165 (310)
T COG1105 144 PPDAYAELIRILRQQGAKVILD 165 (310)
T ss_pred CHHHHHHHHHHHHhcCCeEEEE
Confidence 45678889998876 4555543
No 233
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.45 E-value=3.8e+02 Score=20.18 Aligned_cols=100 Identities=12% Similarity=-0.015 Sum_probs=53.6
Q ss_pred cceeeEEE-ECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEE
Q psy8570 11 FVVCVDAF-LGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAG 87 (159)
Q Consensus 11 ~~~~v~ai-iGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~ 87 (159)
..++++++ +.|........+-..+...++|+|..+........... .+..+...+..-++..+..|... +-.+++
T Consensus 53 ~~~~~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~~~~~~~~~~--~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~ 130 (294)
T cd06316 53 ISQKPDIIISIPVDPVSTAAAYKKVAEAGIKLVFMDNVPSGLEHGKD--YAGIVTDDNYGNGQIAADALAKALPGKGKVG 130 (294)
T ss_pred HHhCCCEEEEcCCCchhhhHHHHHHHHcCCcEEEecCCCcccccCcc--eEEEEccCcHHHHHHHHHHHHHHhCCCceEE
Confidence 34566655 44533222233334455679999987654322211111 12335556556667777766655 778999
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
++....+. .....+.+++.+.+++.
T Consensus 131 ~l~~~~~~------~~~~~R~~gf~~~l~~~ 155 (294)
T cd06316 131 LIYHGADY------FVTNQRDQGFKETIKKN 155 (294)
T ss_pred EEeCCCCc------ccHHHHHHHHHHHHHHh
Confidence 88654321 12344566666666543
No 234
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=20.44 E-value=2e+02 Score=23.76 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=25.5
Q ss_pred eeeEEEECCCCch-hHHHHHHHHhccCCcEEcc
Q psy8570 13 VCVDAFLGPVCDY-VIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 13 ~~v~aiiGp~~s~-~~~~va~~~~~~~iP~is~ 44 (159)
++++.++|..+.. ....+..++..+++|+++.
T Consensus 212 krPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt 244 (432)
T TIGR00173 212 KRGVIVAGPLPPAEDAEALAALAEALGWPLLAD 244 (432)
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEe
Confidence 5688889988754 4566888999999999953
No 235
>PRK08322 acetolactate synthase; Reviewed
Probab=20.41 E-value=1.6e+02 Score=25.01 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=26.7
Q ss_pred eeeEEEECCCCc--hhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~~ 45 (159)
++++.++|..+. .....+..++..+++|+++..
T Consensus 197 ~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~ 231 (547)
T PRK08322 197 KNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQ 231 (547)
T ss_pred CCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEcc
Confidence 578889998764 456778999999999999643
No 236
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=20.13 E-value=1.7e+02 Score=25.31 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=26.4
Q ss_pred eeeEEEECCCCc--hhHHHHHHHHhccCCcEEcc
Q psy8570 13 VCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 13 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~ 44 (159)
+++..++|.... .....+..++..+++|+++.
T Consensus 197 ~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt 230 (579)
T TIGR03457 197 KFPVIISGGGVVMGDAVEECKALAERLGAPVVNS 230 (579)
T ss_pred CCCEEEECcCccccChHHHHHHHHHHhCCCEEEc
Confidence 568888998874 55677999999999999964
No 237
>PRK08617 acetolactate synthase; Reviewed
Probab=20.10 E-value=1.7e+02 Score=24.97 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=27.3
Q ss_pred eeeEEEECCCCc--hhHHHHHHHHhccCCcEEcccc
Q psy8570 13 VCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 13 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~~~ 46 (159)
++++.++|..+. .....+..++..+++|+++...
T Consensus 202 krPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~ 237 (552)
T PRK08617 202 KLPVLLLGMRASSPEVTAAIRRLLERTNLPVVETFQ 237 (552)
T ss_pred CCCEEEECCCcchhhHHHHHHHHHHHhCCCEEeccc
Confidence 578899999875 4557789999999999997443
Done!