Query psy8570
Match_columns 159
No_of_seqs 148 out of 1353
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 22:13:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sm9_A Mglur3, metabotropic gl 99.9 4.1E-22 1.4E-26 164.0 14.9 135 13-157 115-251 (479)
2 3ks9_A Mglur1, metabotropic gl 99.9 4.2E-22 1.4E-26 164.6 14.5 136 11-156 125-263 (496)
3 2e4u_A Metabotropic glutamate 99.9 7.3E-22 2.5E-26 164.9 16.0 136 12-157 115-252 (555)
4 1jdp_A NPR-C, atrial natriuret 99.9 6.2E-22 2.1E-26 160.3 10.6 135 13-156 83-218 (441)
5 3mq4_A Mglur7, metabotropic gl 99.8 1.1E-21 3.8E-26 161.4 6.5 135 13-156 116-254 (481)
6 1dp4_A Atrial natriuretic pept 99.8 1.4E-20 4.7E-25 151.7 10.8 139 12-157 75-214 (435)
7 3qel_B Glutamate [NMDA] recept 99.8 2.4E-20 8.3E-25 148.7 11.9 131 13-156 62-201 (364)
8 3qek_A NMDA glutamate receptor 99.8 7.7E-20 2.6E-24 145.6 11.3 138 10-156 61-222 (384)
9 4f11_A Gamma-aminobutyric acid 99.8 5E-19 1.7E-23 142.8 10.8 129 13-156 84-213 (433)
10 3h6g_A Glutamate receptor, ion 99.7 8.1E-18 2.8E-22 134.2 11.1 130 11-156 68-198 (395)
11 4gpa_A Glutamate receptor 4; P 99.7 9.2E-18 3.1E-22 132.7 9.7 126 10-156 65-191 (389)
12 3om0_A Glutamate receptor, ion 99.7 6.4E-17 2.2E-21 129.0 9.4 128 11-156 67-198 (393)
13 3o21_A Glutamate receptor 3; p 99.7 2.4E-16 8.2E-21 126.1 9.6 126 11-156 66-192 (389)
14 3hsy_A Glutamate receptor 2; l 99.6 2.6E-16 8.7E-21 125.2 7.4 128 11-156 57-186 (376)
15 3kg2_A Glutamate receptor 2; I 99.6 9.3E-16 3.2E-20 132.5 8.8 128 11-156 57-186 (823)
16 3saj_A Glutamate receptor 1; r 99.6 2.3E-15 7.7E-20 119.9 6.2 125 11-156 64-189 (384)
17 3n0w_A ABC branched chain amin 99.5 1.1E-13 3.6E-18 109.6 10.3 132 13-156 72-204 (379)
18 3i45_A Twin-arginine transloca 99.5 5.2E-14 1.8E-18 111.7 8.3 133 13-156 72-206 (387)
19 3i09_A Periplasmic branched-ch 99.5 1.6E-13 5.5E-18 108.3 11.0 132 13-156 70-202 (375)
20 3h5l_A Putative branched-chain 99.5 2.5E-14 8.7E-19 114.7 6.2 132 13-156 82-226 (419)
21 3n0x_A Possible substrate bind 99.5 1.8E-13 6E-18 108.4 9.1 131 13-156 72-208 (374)
22 4eyg_A Twin-arginine transloca 99.4 5.4E-13 1.8E-17 104.7 10.2 129 13-155 71-200 (368)
23 4evq_A Putative ABC transporte 99.4 1E-12 3.5E-17 103.4 10.0 135 10-156 77-213 (375)
24 4f06_A Extracellular ligand-bi 99.4 6.7E-13 2.3E-17 105.1 9.0 130 12-155 70-200 (371)
25 3ipc_A ABC transporter, substr 99.4 1.3E-12 4.4E-17 102.2 9.7 133 11-156 66-200 (356)
26 3lop_A Substrate binding perip 99.4 2.6E-12 9E-17 101.0 11.5 129 13-156 72-203 (364)
27 3td9_A Branched chain amino ac 99.4 2.4E-12 8.2E-17 101.1 10.0 129 13-155 80-210 (366)
28 1usg_A Leucine-specific bindin 99.3 5.6E-12 1.9E-16 98.0 9.5 132 12-156 67-200 (346)
29 3hut_A Putative branched-chain 99.3 1E-11 3.4E-16 97.2 11.0 131 12-156 70-201 (358)
30 3sg0_A Extracellular ligand-bi 99.3 6.1E-12 2.1E-16 99.0 9.8 132 13-156 88-221 (386)
31 3snr_A Extracellular ligand-bi 99.2 4.4E-11 1.5E-15 93.2 10.7 128 14-156 69-197 (362)
32 3eaf_A ABC transporter, substr 99.2 7E-11 2.4E-15 93.8 9.2 128 12-156 74-206 (391)
33 3lkb_A Probable branched-chain 99.1 1.1E-10 3.6E-15 92.6 7.9 130 13-156 74-205 (392)
34 4gnr_A ABC transporter substra 99.0 1.7E-09 5.9E-14 84.4 10.1 130 12-156 73-203 (353)
35 1pea_A Amidase operon; gene re 99.0 1E-08 3.5E-13 81.1 12.5 130 13-156 74-204 (385)
36 2h4a_A YRAM (HI1655); perplasm 98.6 2.9E-07 9.8E-12 72.2 9.7 129 11-156 53-182 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 98.4 1.9E-06 6.5E-11 66.8 9.5 108 11-131 55-163 (327)
38 3umf_A Adenylate kinase; rossm 90.5 0.2 6.7E-06 36.7 3.2 37 10-46 26-62 (217)
39 3brq_A HTH-type transcriptiona 88.8 4.4 0.00015 29.5 9.7 95 12-119 75-169 (296)
40 3l49_A ABC sugar (ribose) tran 87.9 3.1 0.00011 30.4 8.4 93 12-118 59-154 (291)
41 3sr0_A Adenylate kinase; phosp 87.7 0.37 1.3E-05 34.8 3.0 31 16-46 3-33 (206)
42 3rot_A ABC sugar transporter, 86.4 7.1 0.00024 28.7 9.7 100 11-119 58-160 (297)
43 1dbq_A Purine repressor; trans 83.4 10 0.00035 27.4 9.3 96 12-119 61-156 (289)
44 2h0a_A TTHA0807, transcription 82.4 12 0.0004 27.0 9.5 95 9-119 50-149 (276)
45 2qu7_A Putative transcriptiona 82.2 3.3 0.00011 30.3 6.1 93 11-119 60-152 (288)
46 3clk_A Transcription regulator 80.5 11 0.00038 27.4 8.5 94 11-119 62-155 (290)
47 3kke_A LACI family transcripti 78.5 17 0.0006 26.6 9.7 92 12-119 69-161 (303)
48 3dbi_A Sugar-binding transcrip 78.1 12 0.00041 28.0 8.2 95 12-119 117-211 (338)
49 3bbl_A Regulatory protein of L 77.5 18 0.00061 26.3 10.1 94 12-119 62-155 (287)
50 3g85_A Transcriptional regulat 76.5 18 0.00063 26.1 8.7 94 10-119 64-157 (289)
51 3o74_A Fructose transport syst 75.9 19 0.00064 25.7 10.5 94 12-119 56-150 (272)
52 3k4h_A Putative transcriptiona 73.7 23 0.00078 25.6 10.7 95 12-119 67-161 (292)
53 3k9c_A Transcriptional regulat 73.7 23 0.0008 25.7 10.2 93 11-119 63-155 (289)
54 2hsg_A Glucose-resistance amyl 72.4 25 0.00085 26.2 8.6 95 11-119 113-208 (332)
55 2qh8_A Uncharacterized protein 72.0 27 0.00092 25.7 9.0 98 10-119 65-169 (302)
56 3c3k_A Alanine racemase; struc 71.8 26 0.00088 25.4 11.2 94 11-119 61-154 (285)
57 2o20_A Catabolite control prot 71.4 29 0.00099 25.8 9.2 94 12-119 117-210 (332)
58 2rjo_A Twin-arginine transloca 70.9 30 0.001 25.7 12.2 101 11-118 58-165 (332)
59 2fep_A Catabolite control prot 70.3 28 0.00096 25.2 9.2 94 12-119 70-164 (289)
60 3d8u_A PURR transcriptional re 70.2 27 0.00091 24.9 11.0 94 12-119 57-150 (275)
61 3o1i_D Periplasmic protein TOR 69.9 17 0.00059 26.4 7.1 100 12-119 61-166 (304)
62 2rgy_A Transcriptional regulat 68.6 31 0.001 25.0 10.6 94 12-119 65-158 (290)
63 3h75_A Periplasmic sugar-bindi 64.3 42 0.0014 25.1 11.2 101 13-119 61-175 (350)
64 3egc_A Putative ribose operon 64.2 28 0.00096 25.2 7.3 94 12-119 62-155 (291)
65 3lft_A Uncharacterized protein 63.4 41 0.0014 24.5 9.3 128 10-155 58-192 (295)
66 1jx6_A LUXP protein; protein-l 62.5 45 0.0015 24.7 9.6 101 12-119 102-204 (342)
67 1tjy_A Sugar transport protein 61.1 47 0.0016 24.5 9.7 95 11-117 57-156 (316)
68 2h3h_A Sugar ABC transporter, 60.5 47 0.0016 24.3 13.4 96 12-119 55-153 (313)
69 3g1w_A Sugar ABC transporter; 59.5 47 0.0016 24.0 12.4 95 11-118 58-155 (305)
70 3gmt_A Adenylate kinase; ssgci 58.8 7 0.00024 28.7 3.0 31 15-45 10-40 (230)
71 3qk7_A Transcriptional regulat 58.8 49 0.0017 24.0 10.7 92 13-119 64-156 (294)
72 2iks_A DNA-binding transcripti 58.0 50 0.0017 23.8 11.3 95 12-119 74-168 (293)
73 3gv0_A Transcriptional regulat 56.7 53 0.0018 23.7 9.2 92 13-119 65-157 (288)
74 1tev_A UMP-CMP kinase; ploop, 56.4 9.3 0.00032 25.9 3.2 34 12-45 2-35 (196)
75 3tb6_A Arabinose metabolism tr 55.7 53 0.0018 23.5 7.5 94 12-119 69-166 (298)
76 3gyb_A Transcriptional regulat 55.6 39 0.0013 24.1 6.7 90 11-119 57-146 (280)
77 2bbw_A Adenylate kinase 4, AK4 55.5 8.1 0.00028 27.9 2.8 42 4-45 17-59 (246)
78 3exa_A TRNA delta(2)-isopenten 55.2 12 0.0004 29.0 3.8 34 12-45 2-35 (322)
79 1cke_A CK, MSSA, protein (cyti 53.1 10 0.00035 26.6 3.0 33 14-46 6-38 (227)
80 3tlx_A Adenylate kinase 2; str 52.6 11 0.00039 27.2 3.2 33 13-45 29-61 (243)
81 2grj_A Dephospho-COA kinase; T 52.4 15 0.0005 25.8 3.7 38 7-44 6-43 (192)
82 2fn9_A Ribose ABC transporter, 51.8 63 0.0022 23.1 11.3 96 12-118 56-160 (290)
83 1qpz_A PURA, protein (purine n 50.1 75 0.0026 23.5 10.0 96 12-119 112-207 (340)
84 3cs3_A Sugar-binding transcrip 48.8 70 0.0024 22.8 11.1 92 14-119 57-148 (277)
85 2fvy_A D-galactose-binding per 45.8 81 0.0028 22.7 12.9 102 11-119 56-170 (309)
86 2x7x_A Sensor protein; transfe 45.4 88 0.003 23.0 11.7 96 11-118 59-157 (325)
87 3jy6_A Transcriptional regulat 45.0 81 0.0028 22.4 7.2 93 12-118 61-153 (276)
88 3lkv_A Uncharacterized conserv 44.8 91 0.0031 22.9 9.0 126 10-153 65-197 (302)
89 1ukz_A Uridylate kinase; trans 44.2 20 0.00068 24.7 3.3 33 13-45 15-47 (203)
90 3ake_A Cytidylate kinase; CMP 44.0 18 0.00061 24.8 3.1 31 15-45 4-34 (208)
91 3cm0_A Adenylate kinase; ATP-b 43.4 21 0.00072 24.1 3.3 33 13-45 4-36 (186)
92 3d02_A Putative LACI-type tran 43.2 89 0.0031 22.4 9.1 94 12-117 59-155 (303)
93 2c95_A Adenylate kinase 1; tra 42.9 17 0.00057 24.7 2.7 34 12-45 8-41 (196)
94 1q3t_A Cytidylate kinase; nucl 42.6 20 0.00068 25.6 3.2 35 11-45 14-48 (236)
95 3a8t_A Adenylate isopentenyltr 41.6 24 0.00081 27.4 3.6 32 13-44 40-71 (339)
96 3dl0_A Adenylate kinase; phosp 41.4 21 0.0007 24.9 3.1 29 16-44 3-31 (216)
97 3cf4_G Acetyl-COA decarboxylas 41.3 28 0.00096 23.8 3.7 34 13-46 35-70 (170)
98 3fb4_A Adenylate kinase; psych 40.3 21 0.00071 24.8 2.9 29 16-44 3-31 (216)
99 2bwj_A Adenylate kinase 5; pho 39.8 21 0.00072 24.3 2.9 33 12-44 11-43 (199)
100 3ksm_A ABC-type sugar transpor 39.3 98 0.0033 21.7 11.9 95 12-118 56-156 (276)
101 2iyv_A Shikimate kinase, SK; t 38.6 27 0.00092 23.5 3.3 32 14-45 3-34 (184)
102 1zuh_A Shikimate kinase; alpha 38.1 31 0.0011 22.8 3.5 35 11-45 5-39 (168)
103 3gbv_A Putative LACI-family tr 37.1 1.1E+02 0.0038 21.8 12.9 101 11-119 66-169 (304)
104 3lw7_A Adenylate kinase relate 37.1 28 0.00095 22.8 3.1 31 14-45 2-32 (179)
105 2ze6_A Isopentenyl transferase 36.8 32 0.0011 25.0 3.6 31 14-44 2-32 (253)
106 3e61_A Putative transcriptiona 36.6 1.1E+02 0.0038 21.6 9.7 91 12-119 62-152 (277)
107 2cdn_A Adenylate kinase; phosp 36.2 34 0.0012 23.4 3.5 31 14-44 21-51 (201)
108 2qt1_A Nicotinamide riboside k 36.0 33 0.0011 23.6 3.4 36 11-46 19-55 (207)
109 1qf9_A UMP/CMP kinase, protein 35.4 30 0.001 23.2 3.1 31 14-44 7-37 (194)
110 2h92_A Cytidylate kinase; ross 35.0 31 0.001 24.0 3.1 33 13-45 3-35 (219)
111 3fdi_A Uncharacterized protein 35.0 33 0.0011 24.0 3.3 32 12-43 5-36 (201)
112 3bil_A Probable LACI-family tr 34.9 89 0.0031 23.3 6.0 95 12-119 120-214 (348)
113 3kb2_A SPBC2 prophage-derived 34.5 37 0.0013 22.3 3.4 31 15-45 3-33 (173)
114 1ytl_A Acetyl-COA decarboxylas 34.3 41 0.0014 23.3 3.6 32 13-46 36-69 (174)
115 3foz_A TRNA delta(2)-isopenten 34.1 37 0.0013 26.1 3.6 32 13-44 10-41 (316)
116 3vaa_A Shikimate kinase, SK; s 33.8 39 0.0013 23.2 3.5 34 12-45 24-57 (199)
117 1aky_A Adenylate kinase; ATP:A 33.5 38 0.0013 23.6 3.5 31 14-44 5-35 (220)
118 3huu_A Transcription regulator 33.3 1.4E+02 0.0046 21.6 7.7 94 12-119 81-174 (305)
119 3kjx_A Transcriptional regulat 33.2 1.3E+02 0.0044 22.2 6.6 95 12-119 122-216 (344)
120 1zd8_A GTP:AMP phosphotransfer 32.8 31 0.0011 24.2 2.9 32 13-44 7-38 (227)
121 3r20_A Cytidylate kinase; stru 32.4 35 0.0012 24.8 3.1 34 13-46 9-42 (233)
122 1kht_A Adenylate kinase; phosp 32.3 26 0.0009 23.5 2.3 33 13-45 3-40 (192)
123 3d3q_A TRNA delta(2)-isopenten 32.2 36 0.0012 26.4 3.3 31 14-44 8-38 (340)
124 3m9w_A D-xylose-binding peripl 31.8 1.4E+02 0.0049 21.5 11.1 95 12-118 56-152 (313)
125 3be4_A Adenylate kinase; malar 31.2 38 0.0013 23.6 3.1 30 15-44 7-36 (217)
126 2rhm_A Putative kinase; P-loop 30.9 41 0.0014 22.6 3.2 32 13-44 5-36 (193)
127 3trf_A Shikimate kinase, SK; a 30.8 47 0.0016 22.2 3.5 33 13-45 5-37 (185)
128 1knq_A Gluconate kinase; ALFA/ 30.8 50 0.0017 21.9 3.6 33 12-44 7-39 (175)
129 3l6u_A ABC-type sugar transpor 30.6 1.4E+02 0.005 21.1 10.8 95 12-118 62-164 (293)
130 3h5o_A Transcriptional regulat 30.5 1.6E+02 0.0055 21.6 8.5 91 12-119 116-207 (339)
131 2vk2_A YTFQ, ABC transporter p 30.4 1.5E+02 0.0052 21.3 11.0 100 11-119 55-158 (306)
132 1via_A Shikimate kinase; struc 30.3 43 0.0015 22.3 3.2 31 15-45 6-36 (175)
133 1e6c_A Shikimate kinase; phosp 30.3 45 0.0015 21.9 3.2 32 14-45 3-34 (173)
134 3ctp_A Periplasmic binding pro 30.2 63 0.0022 23.8 4.4 89 12-119 114-202 (330)
135 2q5c_A NTRC family transcripti 30.1 1.4E+02 0.0048 20.8 6.2 94 40-155 54-148 (196)
136 1e4v_A Adenylate kinase; trans 30.1 37 0.0013 23.6 2.9 29 16-44 3-31 (214)
137 1kag_A SKI, shikimate kinase I 30.1 49 0.0017 21.8 3.4 32 13-44 4-35 (173)
138 3hcw_A Maltose operon transcri 29.9 1.5E+02 0.0053 21.2 11.7 96 12-119 66-161 (295)
139 4e22_A Cytidylate kinase; P-lo 29.3 44 0.0015 24.1 3.3 34 13-46 27-60 (252)
140 3iij_A Coilin-interacting nucl 29.3 49 0.0017 22.1 3.3 34 12-45 10-43 (180)
141 1uf9_A TT1252 protein; P-loop, 28.6 55 0.0019 22.1 3.6 32 13-45 8-39 (203)
142 1ly1_A Polynucleotide kinase; 28.5 59 0.002 21.4 3.6 31 14-44 3-34 (181)
143 2xb4_A Adenylate kinase; ATP-b 28.0 50 0.0017 23.2 3.3 30 15-44 2-31 (223)
144 1ak2_A Adenylate kinase isoenz 27.8 54 0.0018 23.2 3.4 32 14-45 17-48 (233)
145 3crm_A TRNA delta(2)-isopenten 27.7 50 0.0017 25.3 3.4 31 14-44 6-36 (323)
146 1zak_A Adenylate kinase; ATP:A 27.6 36 0.0012 23.8 2.4 31 14-44 6-36 (222)
147 3hww_A 2-succinyl-5-enolpyruvy 26.2 48 0.0016 27.1 3.2 32 13-44 220-251 (556)
148 2v54_A DTMP kinase, thymidylat 25.8 71 0.0024 21.6 3.7 33 12-44 3-36 (204)
149 3asz_A Uridine kinase; cytidin 25.1 44 0.0015 23.0 2.5 34 12-45 5-40 (211)
150 1jjv_A Dephospho-COA kinase; P 25.0 74 0.0025 21.7 3.7 30 14-44 3-32 (206)
151 3nbm_A PTS system, lactose-spe 24.5 64 0.0022 20.4 3.0 27 16-42 56-82 (108)
152 3t61_A Gluconokinase; PSI-biol 24.3 63 0.0022 22.0 3.2 32 14-45 19-50 (202)
153 1vht_A Dephospho-COA kinase; s 24.1 83 0.0028 21.7 3.8 31 13-44 4-34 (218)
154 2pt5_A Shikimate kinase, SK; a 24.1 73 0.0025 20.8 3.4 30 15-44 2-31 (168)
155 2pju_A Propionate catabolism o 24.0 1.8E+02 0.0061 20.9 5.7 93 41-155 67-160 (225)
156 2if2_A Dephospho-COA kinase; a 23.9 69 0.0023 21.8 3.3 30 15-45 3-32 (204)
157 1y63_A LMAJ004144AAA protein; 23.5 69 0.0024 21.6 3.2 34 12-45 9-43 (184)
158 3bvp_A INT, TP901-1 integrase; 22.7 1.6E+02 0.0054 18.9 7.6 83 68-155 24-108 (138)
159 2pbr_A DTMP kinase, thymidylat 22.7 77 0.0026 21.1 3.3 30 15-44 2-34 (195)
160 2vli_A Antibiotic resistance p 22.3 70 0.0024 21.2 3.0 31 12-42 4-34 (183)
161 4feg_A Pyruvate oxidase; carba 22.1 68 0.0023 26.5 3.4 33 13-45 213-245 (603)
162 3eya_A Pyruvate dehydrogenase 21.8 50 0.0017 26.9 2.5 32 13-44 202-233 (549)
163 3g13_A Putative conjugative tr 21.2 1.9E+02 0.0064 19.2 8.1 82 70-155 28-111 (169)
164 3eph_A TRNA isopentenyltransfe 20.9 68 0.0023 25.6 3.0 32 13-44 2-33 (409)
165 1uj2_A Uridine-cytidine kinase 20.6 1E+02 0.0035 21.9 3.8 27 14-40 23-49 (252)
166 4eun_A Thermoresistant glucoki 20.5 92 0.0031 21.2 3.4 32 13-44 29-60 (200)
167 4fe7_A Xylose operon regulator 20.4 2.9E+02 0.0099 21.0 12.0 101 9-119 71-171 (412)
168 3uug_A Multiple sugar-binding 20.2 2.5E+02 0.0086 20.2 9.1 96 11-117 56-159 (330)
169 3guv_A Site-specific recombina 20.0 2E+02 0.0068 19.0 9.8 82 70-155 27-111 (167)
No 1
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=99.88 E-value=4.1e-22 Score=164.01 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=115.5
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
.+++|||||.+|..+..++.++..+++|+|+++++++.++++..||+++|+.|++..++.+++++++||||+||++|+++
T Consensus 115 ~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~d 194 (479)
T 3sm9_A 115 LLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASE 194 (479)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 57999999999999999999999999999999999999999989999999999999999999999999999999999998
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHH-HHHhc-CceEEEeee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQL-IAITK-RARIIKSLD 157 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L-~~~~~-~aRIii~~~ 157 (159)
+++ +...++.+.+++++.+ ++++....+... ....++..++ +.+++ .++|||+..
T Consensus 195 d~~--------G~~~~~~~~~~~~~~G-i~v~~~~~i~~~-~~~~d~~~~l~~~i~~s~a~vIi~~~ 251 (479)
T 3sm9_A 195 GDY--------GETGIEAFEQEARLRN-ISIATAEKVGRS-NIRKSYDSVIRELLQKPNARVVVLFM 251 (479)
T ss_dssp SHH--------HHHHHHHHHHHHHTTT-CEEEEEEEECC---CHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred chh--------hHHHHHHHHHHHHHCC-ceEEEEEEcCCC-CChHHHHHHHHHHHhcCCCeEEEEEc
Confidence 764 5667889999999875 677666666542 2356788888 66664 689887653
No 2
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=99.88 E-value=4.2e-22 Score=164.60 Aligned_cols=136 Identities=15% Similarity=0.206 Sum_probs=117.1
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
.+++++|||||.+|..+..++.++..+++|+|+++++++.++++..||+++|+.|++..++.+++++++||||+||++|+
T Consensus 125 ~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~ 204 (496)
T 3ks9_A 125 TKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVH 204 (496)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEE
Confidence 46789999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc---CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK---RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~---~aRIii~~ 156 (159)
+++++ +...++.+.+++++.+ ++++....+... ....++..+++++++ +++|||+.
T Consensus 205 ~dd~~--------G~~~~~~~~~~~~~~G-i~v~~~~~i~~~-~~~~d~~~~l~~i~~~~~~a~vii~~ 263 (496)
T 3ks9_A 205 TEGNY--------GESGMDAFKELAAQEG-LSIAHSDKIYSN-AGEKSFDRLLRKLRERLPKARVVVCF 263 (496)
T ss_dssp ESSHH--------HHHHHHHHHHHHHHTT-CEEEEEEEECTT-CCHHHHHHHHHHHHTTTTTTCEEEEE
T ss_pred eccHH--------HHHHHHHHHHHHHHcC-ceEEEEEEECCC-CCHHHHHHHHHHHHhccCceEEEEEe
Confidence 98764 5667888888888875 677666666432 346788888888875 68988764
No 3
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=99.88 E-value=7.3e-22 Score=164.88 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=117.9
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
+++++|||||.+|..+..++.++..+++|+|+++++++.++++..||+|+|+.|++..++.+++++++||||+||++|++
T Consensus 115 ~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~~ 194 (555)
T 2e4u_A 115 PLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVAS 194 (555)
T ss_dssp CCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 57899999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHh--cCceEEEeee
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAIT--KRARIIKSLD 157 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~--~~aRIii~~~ 157 (159)
++++ +...++.+.+++++.+ ++++....+... .+..++.+++++++ ..+||||+..
T Consensus 195 d~~~--------g~~~~~~~~~~~~~~g-i~v~~~~~~~~~-~~~~~~~~~l~~i~~~s~a~vIi~~~ 252 (555)
T 2e4u_A 195 EGDY--------GETGIEAFEQEARLRN-ICIATAEKVGRS-NIRKSYDSVIRELLQKPNARVVVLFM 252 (555)
T ss_dssp SSTT--------HHHHHHHHHHHHHTTT-CEEEEEEEECTT-CCHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred eChH--------HHHHHHHHHHHHHHCC-ccEEEEEEeCCC-CChHHHHHHHHHHhccCCCCEEEEEc
Confidence 8865 5667888889898875 677666666542 24567888999985 3689987753
No 4
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=99.87 E-value=6.2e-22 Score=160.29 Aligned_cols=135 Identities=30% Similarity=0.617 Sum_probs=113.6
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcc-cCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKF-EYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~-~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
+++.|||||.||..+..++.++..+++|+|+++++++.++++. .||+++|+.|++..++.++++++++|+|+||++|++
T Consensus 83 ~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~ 162 (441)
T 1jdp_A 83 AKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYS 162 (441)
T ss_dssp CCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 4899999999999999999999999999999999999999887 899999999999999999999999999999999999
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEee
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSL 156 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~ 156 (159)
+++++ +.|+..++.+.+.+++.+ ++++.. .+.. .+..++..++++++..+||||++
T Consensus 163 d~~~g-----~~~~~~~~~~~~~~~~~g-~~v~~~-~~~~--~~~~d~~~~l~~i~~~~~vii~~ 218 (441)
T 1jdp_A 163 DDKLE-----RNCYFTLEGVHEVFQEEG-LHTSIY-SFDE--TKDLDLEDIVRNIQASERVVIMC 218 (441)
T ss_dssp CCSSS-----CHHHHHHHHHHHHHHHHT-CEEEEE-EECT--TSCCCHHHHHHHHHHHCSEEEEE
T ss_pred cCCcc-----cchHHHHHHHHHHHHhcC-cEEEEE-EecC--CcccCHHHHHHHhhcCCcEEEEe
Confidence 88652 347778889999888765 455433 3322 12235788888888668988876
No 5
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.84 E-value=1.1e-21 Score=161.35 Aligned_cols=135 Identities=15% Similarity=0.165 Sum_probs=103.0
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
++++|||||.+|..+..++.++..+++|+|+++++++.++++..||+++|+.|++..++.+++++++||||+||++|+++
T Consensus 116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d 195 (481)
T 3mq4_A 116 EKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASE 195 (481)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC---
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEEEc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChH--HHHHHHHHHh--cCceEEEee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPE--KLKEQLIAIT--KRARIIKSL 156 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~--~~~~~L~~~~--~~aRIii~~ 156 (159)
+++ +...++.+.+.+.+.++++++....+.... ... ++..++++++ ..++|||+.
T Consensus 196 ~~~--------G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~-~~~~~d~~~~l~~i~~~s~a~vIi~~ 254 (481)
T 3mq4_A 196 GSY--------GEKGVESFTQISKEAGGLSIAQSVRIPQER-KDRTIDFDRIIKQLLDTPNSRAVVIF 254 (481)
T ss_dssp CHH--------HHHHHHHHHHCC---CCCEECCCCCCCCC-------CCSHHHHCCCCC----CEEEC
T ss_pred chh--------HHHHHHHHHHHHHHhCCEEEEEEEEcCCCC-ccchHHHHHHHHHHHhcCCCEEEEEE
Confidence 764 555677777777653345665545554321 122 5667888776 368887764
No 6
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=99.83 E-value=1.4e-20 Score=151.74 Aligned_cols=139 Identities=26% Similarity=0.468 Sum_probs=111.0
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
.+++.|||||.||..+..++.++..+++|+|+++++++.++++..||+++|+.|++..++.++++++++|+|+||++||.
T Consensus 75 ~~~v~aviG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~ 154 (435)
T 1dp4_A 75 EHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLY 154 (435)
T ss_dssp HHCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred hcCceEEECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 46899999999999999999999999999999999999999987899999999999999999999999999999999944
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcC-CCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEeee
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITS-PSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLD 157 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~ 157 (159)
.|+.. ++.++...++.+.+.+.+ .+ ++++... +.. .+..++.++|+++++.+||||++-
T Consensus 155 ~d~~~---~~~~~g~~~~~~~~~~~~~~g-~~v~~~~-~~~--~~~~d~~~~l~~i~~~~~viv~~~ 214 (435)
T 1dp4_A 155 ADRLG---DDRPCFFIVEGLYMRVRERLN-ITVNHQE-FVE--GDPDHYPKLLRAVRRKGRVIYICS 214 (435)
T ss_dssp ECCSS---SCCHHHHHHHHHHHHHHHHHC-CEEEEEE-ECT--TCGGGHHHHHHHHHHHCSEEEEES
T ss_pred ccCCC---CcchHHHHHHHHHHHHHhhcC-eEEEEEE-Eec--CchhhHHHHHHHHHhhCceEEEec
Confidence 33210 122344567778888876 54 4554333 322 245678889998888889887753
No 7
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=99.83 E-value=2.4e-20 Score=148.66 Aligned_cols=131 Identities=12% Similarity=0.076 Sum_probs=94.4
Q ss_pred eeeEEEE-CCCCchhHHH--HHHHHhccCCcEEccccCCC-CCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570 13 VCVDAFL-GPVCDYVIAP--VARYSGVWGIPVLTAGGLVA-NFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF 88 (159)
Q Consensus 13 ~~v~aii-Gp~~s~~~~~--va~~~~~~~iP~is~~~~~~-~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~ 88 (159)
.+|.|+| ||.++..+.. ++.+++.+++|+|+++++++ .++++.+||+|+||.|++..++.++++|++||||+||++
T Consensus 62 ~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~i 141 (364)
T 3qel_B 62 RKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSI 141 (364)
T ss_dssp SCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 4687877 5555544544 99999999999999999988 899999999999999999999999999999999999999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCC--C-CCCcceeeeeeccCCChHHHHHHH-HHHhc-CceEEEee
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSP--S-GSNDMKLESFDEETVTPEKLKEQL-IAITK-RARIIKSL 156 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~-~~~~~~~~~f~~~~~~~~~~~~~L-~~~~~-~aRIii~~ 156 (159)
||+++ . + ++.+.+.+++. + ++|......+..+ ....+++.+| +++++ .+||||+.
T Consensus 142 I~~d~-~--------g---~~~~~~~l~~~~~~~~ici~~~~~i~~~-~~~~~~~~~l~~~i~~~~a~ViIv~ 201 (364)
T 3qel_B 142 VTTYF-P--------G---YQDFVNKIRSTIENSFVGWELEEVLLLD-MSLDDGDSKIQNQLKKLQSPIILLY 201 (364)
T ss_dssp EEESC-T--------T---HHHHHHHHHHHHHTCSSCCEEEEEEEEC-TTSCSSSCHHHHHHTTCCCSEEEEE
T ss_pred EEeCC-c--------c---HHHHHHHHHHHhhccccceEEEEEEccC-CCcccHHHHHHHHHHccCCcEEEEE
Confidence 99864 2 2 23344333332 1 2344333333221 1223466677 57764 68887764
No 8
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=99.82 E-value=7.7e-20 Score=145.59 Aligned_cols=138 Identities=15% Similarity=0.149 Sum_probs=103.5
Q ss_pred ccceeeEEEEC-----CCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCc
Q psy8570 10 GFVVCVDAFLG-----PVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWT 84 (159)
Q Consensus 10 ~~~~~v~aiiG-----p~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~ 84 (159)
...++|.||+| |.|+..+..++.++..+++|+|++++.++.++++..||+++|+.|++..++.++++++++|+|+
T Consensus 61 Li~~~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~ 140 (384)
T 3qek_A 61 LISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWN 140 (384)
T ss_dssp TGGGTEEEEEECC--------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCC
T ss_pred HHHcCceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCe
Confidence 45568999999 6788889999999999999999999999999998899999999999999999999999999999
Q ss_pred EEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCC-----------ccee-------eeeeccCCChHHHHHHHHHH
Q psy8570 85 VAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSN-----------DMKL-------ESFDEETVTPEKLKEQLIAI 146 (159)
Q Consensus 85 ~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~-----------~~~~-------~~f~~~~~~~~~~~~~L~~~ 146 (159)
||++|++++++ +....+.+.+.+++.+ .. +... ..+.....+..++..+|+++
T Consensus 141 ~v~ii~~d~~~--------G~~~~~~~~~~~~~~g-~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i 211 (384)
T 3qek_A 141 HVILIVSDDHE--------GRAAQKKLETLLEGKE-SKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEA 211 (384)
T ss_dssp EEEEEEESSHH--------HHHHHHHHHHHHC---------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHH
T ss_pred EEEEEEEcCcc--------cHHHHHHHHHHHHhcc-CccccccccccceeeeccccCcccceecccCCchhhHHHHHHHH
Confidence 99999998764 5556778888887764 21 1110 22211111335788899988
Q ss_pred hc-CceEEEee
Q psy8570 147 TK-RARIIKSL 156 (159)
Q Consensus 147 ~~-~aRIii~~ 156 (159)
++ .+||||+.
T Consensus 212 ~~~~~~vii~~ 222 (384)
T 3qek_A 212 KELEARVIILS 222 (384)
T ss_dssp HTSSCCEEEEE
T ss_pred HhcCCcEEEEE
Confidence 75 68887764
No 9
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=99.79 E-value=5e-19 Score=142.76 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=110.1
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
.++.+||||.||..+..++.++..+++|+|++++.++.++++..||+++|+.|++..++.++++++++|+|++|++|+++
T Consensus 84 ~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~ 163 (433)
T 4f11_A 84 PNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQD 163 (433)
T ss_dssp CCCSEEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CceEEEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 38999999999999999999999999999999999999999888999999999999999999999999999999999998
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+++ +....+.+.+.+++.+ ++++....+.. ++...|+++++ .+|+|+++
T Consensus 164 ~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~------d~~~~l~~i~~~~~~vii~~ 213 (433)
T 4f11_A 164 VQR--------FSEVRNDLTGVLYGED-IEISDTESFSN------DPCTSVKKLKGNDVRIILGQ 213 (433)
T ss_dssp SHH--------HHHHHHHHHHHSSSSS-CEEEEEEEESS------CCHHHHHHHHHTTCCEEEEE
T ss_pred chh--------hHHHHHHHHHHHHHcC-ceEEEEeccCc------CHHHHHHHHhhCCCeEEEEe
Confidence 754 5667788888888875 46655555532 45667777764 68888765
No 10
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=99.74 E-value=8.1e-18 Score=134.21 Aligned_cols=130 Identities=12% Similarity=0.155 Sum_probs=105.6
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..++|.+||||.||..+..++.++..+++|+|++++.++.++++. ++++|+.|++..++.++++++++|+|+|+++|+
T Consensus 68 ~~~~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~--~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~ 145 (395)
T 3h6g_A 68 LSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKD--SFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY 145 (395)
T ss_dssp HHHCCSCEECCSSHHHHHHHHHHHHHTTCCEEECSCCCCCTTCCC--CSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred hhcCcEEEECCCChhHHHHHHHHHhcCCCCeEeeccCcccccccC--ceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 356899999999999999999999999999999999888888764 458999999999999999999999999999997
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
++++ +...++.+.+.+++.+ ++++.. .+.. ...++..+|+++++ .+++|++.
T Consensus 146 -d~~~--------g~~~~~~~~~~~~~~g-~~v~~~-~~~~---~~~d~~~~l~~i~~~~~~vi~~~ 198 (395)
T 3h6g_A 146 -DDST--------GLIRLQELIKAPSRYN-LRLKIR-QLPA---DTKDAKPLLKEMKRGKEFHVIFD 198 (395)
T ss_dssp -SSTH--------HHHHTHHHHTGGGTSS-CEEEEE-ECCS---SGGGGHHHHHHHHHTTCCEEEEE
T ss_pred -EChh--------HHHHHHHHHHhhhcCC-ceEEEE-EeCC---CchhHHHHHHHHhhcCCeEEEEE
Confidence 4433 5566778888887765 344332 3433 35678899999985 67877654
No 11
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=99.73 E-value=9.2e-18 Score=132.67 Aligned_cols=126 Identities=10% Similarity=0.131 Sum_probs=96.0
Q ss_pred ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570 10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM 89 (159)
Q Consensus 10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i 89 (159)
...++|.|||||.||..+..++.++..++||++++++. .+++..|++++|+. +++++++++++|+|+||++|
T Consensus 65 l~~~~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~~~~---~~~~~~~~~~~~~~-----~~~a~~~l~~~~~w~~vaii 136 (389)
T 4gpa_A 65 QYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFP---TEGESQFVLQLRPS-----LRGALLSLLDHYEWNCFVFL 136 (389)
T ss_dssp HHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCC---CSSCCSSEEECSCC-----CHHHHHHHHHHTTCCEEEEE
T ss_pred HHhcCCEEEEeCCccHHHHHHHHHHHHhCCCceecccc---ccccccCCccccCC-----HHHHHHHHHHHcCCcEEEEE
Confidence 34678999999999999999999999999999988754 34566777666543 35699999999999999999
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
|+++. +...++.+.+.+.+.+ ++++....+. ....++.++|+++++ .+|+||+.
T Consensus 137 ~~~d~---------~~~~~~~~~~~~~~~g-~~v~~~~~~~---~~~~d~~~~l~~i~~~~~~vIv~~ 191 (389)
T 4gpa_A 137 YDTDR---------GYSILQAIMEKAGQNG-WHVSAICVEN---FNDVSYRQLLEELDRRQEKKFVID 191 (389)
T ss_dssp ECSTT---------CSHHHHHHHHHHHTTT-CEEEEEECTT---CCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred Eecch---------hhHHHHHHHHHHHhcC-ceEEEEeecC---CcchhHHHHHHHhhccCCcEEEEE
Confidence 97664 3346778888888875 3443332222 356789999999875 67777654
No 12
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=99.69 E-value=6.4e-17 Score=129.03 Aligned_cols=128 Identities=19% Similarity=0.214 Sum_probs=94.4
Q ss_pred cceeeEEEECCCCchh-HHHHHHHHhccCCcEEccccCCCCCCCcccCCee--EEeeCChhhHHHHHHHHHHHcCCcEEE
Q psy8570 11 FVVCVDAFLGPVCDYV-IAPVARYSGVWGIPVLTAGGLVANFELKFEYPTL--TRMMGSFSLVGQAVQSILKNFNWTVAG 87 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~-~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~--~r~~p~~~~~~~a~~~ll~~f~W~~v~ 87 (159)
..++|.|||||.||.. +..++.++..+++|+|++++.. +++..||++ +|+.|++..++.++++++++|+|+||+
T Consensus 67 ~~~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~~a~~---~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~va 143 (393)
T 3om0_A 67 LPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEE---TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSAS 143 (393)
T ss_dssp GGGCCSCEECCSSCHHHHHHHHHHHHHHTCCEEECSCCC---CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEE
T ss_pred HhcCcEEEECCCCchhHHHHHHHHHhccCCCeEeccCCc---CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEE
Confidence 3568999999999954 5799999999999999998764 455678888 999999999999999999999999999
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+|++++++ ...++++.+.+.+.+ .++ ....+. +..++..+|+++++ .+++|++.
T Consensus 144 ii~~~~~~---------g~~l~~~~~~~~~~g-~~v-~~~~~~----~~~d~~~~l~~i~~~~~~vii~~ 198 (393)
T 3om0_A 144 LICAKAEC---------LLRLEELVRGFLISK-ETL-SVRMLD----DSRDPTPLLKEIRDDKVSTIIID 198 (393)
T ss_dssp EEESSTTH---------HHHTHHHHHHHHHSS-SCE-EEEECC-----CCCSHHHHHHHHHHTCSEEEEE
T ss_pred EEEeCchH---------HHHHHHHHHhhhccC-CeE-EEEecC----CCCCHHHHHHHHHhcCCeEEEEE
Confidence 99987653 334455555555443 243 233332 23467788888875 67877654
No 13
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=99.66 E-value=2.4e-16 Score=126.11 Aligned_cols=126 Identities=9% Similarity=0.135 Sum_probs=95.3
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..++|.|||||.||..+..++.++..+++|+|+++.+ .+ ++..|+ +|+.|+ ++.++++++++|||+||++||
T Consensus 66 i~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~~--~~-~~~~~~--~~~~p~---~~~a~~~~~~~~gw~~vaii~ 137 (389)
T 3o21_A 66 FSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFP--TD-ADVQFV--IQMRPA---LKGAILSLLSYYKWEKFVYLY 137 (389)
T ss_dssp HTTTCSCEEECCCTTTHHHHHHHHHHHTCCEEECSCC--CS-SCCSSE--EECSCC---SHHHHHHHHHHHTCCEEEEEE
T ss_pred HhcCcEEEEeCCChhHHHHHHHHhccCCCceeecCCC--Cc-cCCceE--EEEccC---HHHHHHHHHHhCCCCEEEEEE
Confidence 3458999999999999999999999999999987542 22 344555 666676 899999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
++++ +...++.+.+.+.+.+ ++++....+.. .+..++..+|++++. .+|+||+.
T Consensus 138 -d~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~--~~~~d~~~~l~~ik~~~~~vii~~ 192 (389)
T 3o21_A 138 -DTER--------GFSVLQAIMEAAVQNN-WQVTARSVGNI--KDVQEFRRIIEEMDRRQEKRYLID 192 (389)
T ss_dssp -CSTT--------CSHHHHHHHHHHHHTT-CEEEEEECTTC--CCTHHHHHHHHHHHTTTCCEEEEE
T ss_pred -cCcH--------HHHHHHHHHHHhhcCC-CeEEEEEecCC--CCcHHHHHHHHHHHhCCCeEEEEE
Confidence 6654 4456788888888765 45543333221 234589999999986 57877654
No 14
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=99.64 E-value=2.6e-16 Score=125.17 Aligned_cols=128 Identities=12% Similarity=0.175 Sum_probs=83.6
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..++|.|||||.||..+..++.++..+++|+|+++++. +++ .++++|+.|+ ++.++++++++|||+||++|+
T Consensus 57 i~~~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~~---~~~--~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~ 128 (376)
T 3hsy_A 57 FSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPT---DGT--HPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY 128 (376)
T ss_dssp HHTTCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCCC---CSC--CTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE
T ss_pred HhcCcEEEECCCchhHHHHHHHHhccCcCceeecCCCC---ccc--CCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE
Confidence 35689999999999999999999999999999988743 333 4557899876 899999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccC-CChHHHHHHHHHHhc-CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEET-VTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~-~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
++++ +...++.+.+.+.+.+ .+++....+.... .+..++..+|++++. .+++|++.
T Consensus 129 -d~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~ 186 (376)
T 3hsy_A 129 -DSDR--------GLSTLQAVLDSAAEKK-WQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILD 186 (376)
T ss_dssp -CSTT--------CSHHHHHHHHHHHHHT-CEEEEEECTTCC--------------------CEEEEE
T ss_pred -eCch--------hHHHHHHHHHHhhhcC-CeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEE
Confidence 6654 4456778888887764 3443322221100 124678889999885 57877654
No 15
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.62 E-value=9.3e-16 Score=132.46 Aligned_cols=128 Identities=12% Similarity=0.167 Sum_probs=98.9
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..++|.||+||.||..+..++.++..+++|+|++..+ . ...+++++|+.|+ ++.++++++++|||+||++||
T Consensus 57 ~~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~~~--~---~~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~ 128 (823)
T 3kg2_A 57 FSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP--T---DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY 128 (823)
T ss_dssp HHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCC--C---SSCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE
T ss_pred HhcCcEEEEcCCChhHHHHHHHHhhcCCCceeecccC--C---CCCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE
Confidence 3568999999999999999999999999999997432 1 2356788999998 789999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeecc-CCChHHHHHHHHHHhc-CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEE-TVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~-~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
++++ +...++.+.+.+.+.+ ++++....+... ..+..++...|+++++ .+||||+.
T Consensus 129 -d~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~ 186 (823)
T 3kg2_A 129 -DSDR--------GLSTLQAVLDSAAEKK-WQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILD 186 (823)
T ss_dssp -CGGG--------CTHHHHHHHHHHHHTT-CEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEE
T ss_pred -eCCh--------hHHHHHHHHHHhhccC-CceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEE
Confidence 5543 4567888888888875 455544444321 0124578889999986 67887764
No 16
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=99.57 E-value=2.3e-15 Score=119.90 Aligned_cols=125 Identities=12% Similarity=0.181 Sum_probs=95.2
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..++|.||+||.||..+..++.++..+++|+|+++.+ .+ ++..| .+|+.|+ ++.++++++++|||+||++|+
T Consensus 64 ~~~~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~~~--~~-~~~~~--~~~~~p~---~~~a~~~~~~~~g~~~v~ii~ 135 (384)
T 3saj_A 64 FSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFP--VD-TSNQF--VLQLRPE---LQEALISIIDHYKWQTFVYIY 135 (384)
T ss_dssp HHTTCSCEEECCCHHHHHHHHHHHHHHTCCEEECSCC--CS-SCCTT--EEECSCC---CHHHHHHHHHHTTCCEEEEEE
T ss_pred HhcCeEEEECCCCHHHHHHHHHHhccCCCCeEecccc--Cc-CccCc--eEEeccc---HHHHHHHHHHHCCCcEEEEEE
Confidence 3458999999999999999999999999999998532 23 33344 5777776 799999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
++++ +...++.+.+.+++.+ ++++... +.. .+..++..+|++++. .+++|++.
T Consensus 136 -d~~~--------g~~~~~~~~~~~~~~g-~~v~~~~-~~~--~~~~d~~~~l~~ik~~~~~vii~~ 189 (384)
T 3saj_A 136 -DADR--------GLSVLQRVLDTAAEKN-WQVTAVN-ILT--TTEEGYRMLFQDLEKKKERLVVVD 189 (384)
T ss_dssp -CSTT--------CSHHHHHHHHHHHHHT-CEEEEEE-GGG--CCHHHHHHTTTTCCSCSEEEEEEE
T ss_pred -eCch--------hHHHHHHHHHHhhhcC-ceEEEEE-ecc--CCchhHHHHHHHHhccCCcEEEEE
Confidence 5554 4456788888887765 3544333 222 245679999998886 67887664
No 17
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=99.50 E-value=1.1e-13 Score=109.64 Aligned_cols=132 Identities=11% Similarity=-0.015 Sum_probs=104.9
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
+++.+||||.++..+..++.++..+++|+|++++..+.+.++..+|+++|+.|++..++.++++.+.+++|+++++|+.+
T Consensus 72 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~ 151 (379)
T 3n0w_A 72 DGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPD 151 (379)
T ss_dssp SCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecc
Confidence 78999999999999999999999999999999888888877667899999999999999999999999999999999886
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+.+ +....+.+.+.+++.+ +.++....++. ...++...+++++. ..++|++.
T Consensus 152 ~~~--------g~~~~~~~~~~~~~~G-~~v~~~~~~~~---~~~d~~~~l~~i~~~~~d~v~~~ 204 (379)
T 3n0w_A 152 AAY--------GDLMNAAIRRELTAGG-GQIVGSVRFPF---ETQDFSSYLLQAKASGAQLIVST 204 (379)
T ss_dssp SHH--------HHHHHHHHHHHHHHHT-CEEEEEEEECT---TCCCCHHHHHHHHHHTCSEEEEC
T ss_pred cch--------hHHHHHHHHHHHHHcC-CEEEEEEeCCC---CCCCHHHHHHHHHHCCCCEEEEe
Confidence 643 4556777888887764 34444444543 22356667777763 56766553
No 18
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.49 E-value=5.2e-14 Score=111.72 Aligned_cols=133 Identities=10% Similarity=-0.004 Sum_probs=103.7
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
+++.+||||.++..+..++.++..+++|+|++++..+.+.++..+++++|+.|++..++.++++.+.+++|+++++|+.+
T Consensus 72 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~ 151 (387)
T 3i45_A 72 HGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPN 151 (387)
T ss_dssp HCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCS
T ss_pred cCCEEEECCcchHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 48999999999999999999999999999999888777776667899999999999999999999999999999999976
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCC-CCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPS-GSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+.+ +....+.+.+.+++.+ ++.++....+.. ...++...++++++ ..++|++.
T Consensus 152 ~~~--------g~~~~~~~~~~l~~~~~g~~vv~~~~~~~---~~~d~~~~~~~i~~~~~d~v~~~ 206 (387)
T 3i45_A 152 YEY--------GQSAVARFKELLLAARPEVTFVAEQWPAL---YKLDAGPTVQALQQAEPEGLFNV 206 (387)
T ss_dssp SHH--------HHHHHHHHHHHHHHHCTTCEEEEEECCCT---TCCCHHHHHHHHHHTCCSEEEEC
T ss_pred chH--------hHHHHHHHHHHHHHhCCCcEEEeeecCCC---CCcCHHHHHHHHHhCCCCEEEEc
Confidence 543 4556777777777651 223333333332 23467778887764 56776654
No 19
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=99.49 E-value=1.6e-13 Score=108.33 Aligned_cols=132 Identities=8% Similarity=-0.003 Sum_probs=105.4
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
+++.+||||.++..+..++.++..+++|+|++++..+.+.++..+|+++|+.|++..++.++++.+..++|+++++|+.+
T Consensus 70 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~ 149 (375)
T 3i09_A 70 GGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTAD 149 (375)
T ss_dssp SCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecc
Confidence 78999999999999999999999999999999888877877667899999999999999999999999999999999876
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+.+ +....+.+.+.+++.+ +.++....+.. ...++...+++++. ..++|++.
T Consensus 150 ~~~--------g~~~~~~~~~~~~~~G-~~v~~~~~~~~---~~~d~~~~l~~i~~~~~d~v~~~ 202 (375)
T 3i09_A 150 YAF--------GKALEKNTADVVKANG-GKVLGEVRHPL---SASDFSSFLLQAQSSKAQILGLA 202 (375)
T ss_dssp SHH--------HHHHHHHHHHHHHHTT-CEEEEEEEECT---TCSCCHHHHHHHHHTCCSEEEEE
T ss_pred cHH--------HHHHHHHHHHHHHHcC-CEEeeeeeCCC---CCccHHHHHHHHHhCCCCEEEEe
Confidence 643 4556778888888775 34444444443 22456677777764 56766553
No 20
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=99.49 E-value=2.5e-14 Score=114.70 Aligned_cols=132 Identities=8% Similarity=-0.075 Sum_probs=103.0
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCC----CCCcccCCeeEEeeCChhhHHHHHHHHHHHc-------
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVAN----FELKFEYPTLTRMMGSFSLVGQAVQSILKNF------- 81 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~----l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f------- 81 (159)
+++.+||||.+|..+..++.++..+++|+|+.++.... ..+...|++++|+.|++..++.+++++++++
T Consensus 82 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~ 161 (419)
T 3h5l_A 82 DNASALIAGYNLENGTALHDVAADAGVIAMHANTVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFS 161 (419)
T ss_dssp TCCSEEECSCCSSCSCHHHHHHHHHTCEEEECCCCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCC
T ss_pred cCCeEEEccccchhHHHhHHHHHHcCCeEEEcCcchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhcccc
Confidence 78999999999999999999999999999986543211 1233468999999999999999999999987
Q ss_pred -CCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 82 -NWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 82 -~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+|+++++|+.++.+ +....+.+.+.+++.+ +.++....+.. +..++..++++++. .+++|++.
T Consensus 162 ~~~~~vail~~~~~~--------g~~~~~~~~~~~~~~g-~~vv~~~~~~~---~~~d~~~~l~~i~~~~~d~v~~~ 226 (419)
T 3h5l_A 162 RPNNKIAIITGPGIY--------SVNIANAIRDGAGEYG-YDVSLFETVAI---PVSDWGPTLAKLRADPPAVIVVT 226 (419)
T ss_dssp CSSSEEEEEECSSHH--------HHHHHHHHHHHGGGGT-CEEEEEEECCS---SCSCCHHHHHHHHHSCCSEEEEC
T ss_pred CCCCEEEEEEcCcch--------hHHHHHHHHHHHHHcC-CeEEEEecCCC---CCccHHHHHHHHHhcCCCEEEEc
Confidence 99999999987653 5566778888888775 45554455543 23567888888875 67877764
No 21
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=99.46 E-value=1.8e-13 Score=108.39 Aligned_cols=131 Identities=8% Similarity=-0.069 Sum_probs=104.1
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
.++.+||||.+|..+..++.++..+++|+|++.+.++.+.++..+++++|+.|++..+..+++.++++++| ++++|+.+
T Consensus 72 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~ 150 (374)
T 3n0x_A 72 DGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQD 150 (374)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEES
T ss_pred CCceEEEcCCCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCC
Confidence 58999999999999999999999999999988777777777666899999999999999999999999999 79999987
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-C-----ceEEEee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-R-----ARIIKSL 156 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~-----aRIii~~ 156 (159)
+.+ +....+.+.+.+++.+ ..++....++. +..++..++++++. . .++|++.
T Consensus 151 ~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~l~~i~~~~~~~~~~d~v~~~ 208 (374)
T 3n0x_A 151 YAF--------GRDGVAAFKEALAKTG-ATLATEEYVPT---TTTDFTAVGQRLFDALKDKPGKKIIWVI 208 (374)
T ss_dssp SHH--------HHHHHHHHHHHHTTTT-CEEEEEEEECT---TCCCCHHHHHHHHHHHTTCSSEEEEEEC
T ss_pred chH--------HHHHHHHHHHHHHHcC-CEEeeeecCCC---CCccHHHHHHHHHhcCCCCCCCCEEEEE
Confidence 653 5567788888888875 45555555543 23456777777764 3 6666553
No 22
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=99.44 E-value=5.4e-13 Score=104.71 Aligned_cols=129 Identities=8% Similarity=-0.021 Sum_probs=101.5
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
+++.+||||.++..+..++.++..+++|+|++++..+.+.++ +++++|+.|++...+.++++.+..++|+++++|+.+
T Consensus 71 ~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 148 (368)
T 4eyg_A 71 DKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITER--SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSD 148 (368)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG--CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhhccC--CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 789999999999999999999999999999998877666654 789999999999999999999999999999999976
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
+.+ +....+.+.+.+++.+ +.++....+.. +..++...++++++ ..++|++
T Consensus 149 ~~~--------g~~~~~~~~~~l~~~g-~~v~~~~~~~~---~~~d~~~~~~~l~~~~~d~v~~ 200 (368)
T 4eyg_A 149 YAP--------GNDALAFFKERFTAGG-GEIVEEIKVPL---ANPDFAPFLQRMKDAKPDAMFV 200 (368)
T ss_dssp SHH--------HHHHHHHHHHHHHHTT-CEEEEEEEECS---SSCCCHHHHHHHHHHCCSEEEE
T ss_pred chH--------hHHHHHHHHHHHHHcC-CEEEEEEeCCC---CCCcHHHHHHHHHhcCCCEEEE
Confidence 532 5556788888888775 34444444443 22346667776664 5666665
No 23
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=99.41 E-value=1e-12 Score=103.35 Aligned_cols=135 Identities=13% Similarity=0.086 Sum_probs=104.8
Q ss_pred ccc-eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570 10 GFV-VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF 88 (159)
Q Consensus 10 ~~~-~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~ 88 (159)
... ++++++|||.++..+..++.++..+++|+|++++..+.+.++..+++++|+.|++...+.++++.+..+||+++++
T Consensus 77 l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~ 156 (375)
T 4evq_A 77 LIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVT 156 (375)
T ss_dssp CCCCSCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHhcCCceEEEcCCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEE
Confidence 444 4899999999999999999999999999999998877777766689999999999999999999999999999999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
|+.++. .+....+++.+.+++.+ +.++....+.. ...++...++++++ ..++|++.
T Consensus 157 i~~~~~--------~~~~~~~~~~~~l~~~G-~~v~~~~~~~~---~~~d~~~~~~~l~~~~~dai~~~ 213 (375)
T 4evq_A 157 VTWKYA--------AGEEMVSGFKKSFTAGK-GEVVKDITIAF---PDVEFQSALAEIASLKPDCVYAF 213 (375)
T ss_dssp EEESSH--------HHHHHHHHHHHHHHHTT-CEEEEEEEECT---TCCCCHHHHHHHHHHCCSEEEEE
T ss_pred EecCch--------HHHHHHHHHHHHHHHcC-CeEEEEEecCC---CCccHHHHHHHHHhcCCCEEEEe
Confidence 987653 25556788888888875 34434444433 22345566666653 56777663
No 24
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=99.41 E-value=6.7e-13 Score=105.12 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=104.5
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
+++|.+|+||.||..+..++.++..+++|+|++++..+.+..+ .++++|+.|++..+..+++..++..+|+++++|+.
T Consensus 70 ~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~--~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~ 147 (371)
T 4f06_A 70 KEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK--SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVS 147 (371)
T ss_dssp TSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG--CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhccc--CCcceecccchhhhhhhhhhhhhhcCceEEEEEcC
Confidence 4689999999999999999999999999999998887777654 36789999999999999999999999999999999
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
++.+ +....+.+.+.+++.+ ..++....++. ...|+...+.+++. .+.+|++
T Consensus 148 ~~~~--------g~~~~~~~~~~~~~~g-~~vv~~~~~~~---~~~d~~~~l~~i~~~~pd~v~~ 200 (371)
T 4f06_A 148 DYGP--------GIDAETAFKKTFEAEG-GKVVEAVRMPL---STTDFGPIMQRIKNSGADMIFT 200 (371)
T ss_dssp SSHH--------HHHHHHHHHHHHHHTT-CEEEEEEEECT---TCCCCHHHHHHHHHHTCSEEEE
T ss_pred Cccc--------chhHHHHHHHHHHhcC-CceEEEEecCc---ccccHHHHHHHHHhcCCCEEEE
Confidence 8754 4455677778887775 35555555654 23467778888874 5676654
No 25
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.39 E-value=1.3e-12 Score=102.22 Aligned_cols=133 Identities=12% Similarity=0.048 Sum_probs=101.7
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHH-HHHHcCCcEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQS-ILKNFNWTVAGFM 89 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~-ll~~f~W~~v~~i 89 (159)
..+++.+||||.++..+..++.++..+++|+|++++..+.+.++ .+++++|+.|++..++.++++ |+++|+|+++++|
T Consensus 66 ~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii 144 (356)
T 3ipc_A 66 VADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTER-GLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAII 144 (356)
T ss_dssp HHTTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGSS-CCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHCCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhcC-CCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEE
Confidence 34789999999999999999999999999999988887777664 578999999999999999998 5677899999999
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+.++.+ +....+.+.+.+++.+ +.++....+.. ...++...+++++. ..++|+++
T Consensus 145 ~~~~~~--------~~~~~~~~~~~l~~~g-~~v~~~~~~~~---~~~d~~~~~~~l~~~~~d~v~~~ 200 (356)
T 3ipc_A 145 HDKTPY--------GQGLADETKKAANAAG-VTEVMYEGVNV---GDKDFSALISKMKEAGVSIIYWG 200 (356)
T ss_dssp ECSSHH--------HHHHHHHHHHHHHHTT-CCCSEEEECCT---TCCCCHHHHHHHHHTTCCEEEEE
T ss_pred eCCChH--------HHHHHHHHHHHHHHcC-CEEEEEEeeCC---CCCCHHHHHHHHHhcCCCEEEEc
Confidence 976532 5556778888888775 44444444433 22345566666654 56666644
No 26
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=99.39 E-value=2.6e-12 Score=100.96 Aligned_cols=129 Identities=11% Similarity=0.059 Sum_probs=101.7
Q ss_pred eeeEEEECCCCchhHHHHHH--HHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 13 VCVDAFLGPVCDYVIAPVAR--YSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~--~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
+++.+||||.++..+..++. ++..+++|+|++++..+.+.+ +++++|+.|++...+.++++.+..+||+++++|+
T Consensus 72 ~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~---~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~ 148 (364)
T 3lop_A 72 DNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTT---DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLY 148 (364)
T ss_dssp SCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS---CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc---CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEE
Confidence 48999999999999999999 999999999998877665554 7889999999999999999999999999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
.++.+ +....+.+.+.+++.+ +.++....+.. ...++...+++++. ..++|+++
T Consensus 149 ~~~~~--------g~~~~~~~~~~~~~~G-~~v~~~~~~~~---~~~d~~~~~~~l~~~~~d~v~~~ 203 (364)
T 3lop_A 149 QEDAL--------GKEAITGVERTLKAHA-LAITAMASYPR---NTANVGPAVDKLLAADVQAIFLG 203 (364)
T ss_dssp ETTHH--------HHHHHHHHHHHHHTTT-CCCSEEEEECT---TSCCCHHHHHHHHHSCCSEEEEE
T ss_pred eCchh--------hHHHHHHHHHHHHHcC-CcEEEEEEecC---CCccHHHHHHHHHhCCCCEEEEe
Confidence 86542 5567788888888875 45554455543 22356667777664 56666654
No 27
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=99.37 E-value=2.4e-12 Score=101.14 Aligned_cols=129 Identities=13% Similarity=0.018 Sum_probs=98.4
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHH-HHcCCcEEEEEEE
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSIL-KNFNWTVAGFMFN 91 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll-~~f~W~~v~~i~~ 91 (159)
+++.+||||.++..+..++.++..+++|+|++++..+.+.+ .+++++|+.|++..++.++++.+ +++||+++++||.
T Consensus 80 ~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~ 157 (366)
T 3td9_A 80 EKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ--GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTD 157 (366)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT--TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEE
T ss_pred CCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccccC--CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 35999999999999999999999999999999887766654 46899999999999999999998 6789999999987
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
.++. .+....+.+.+.+++.+ +.++... +.. +..++...+++++. ..++|++
T Consensus 158 ~~~~-------~~~~~~~~~~~~~~~~G-~~v~~~~-~~~---~~~d~~~~~~~l~~~~~d~v~~ 210 (366)
T 3td9_A 158 VEQD-------YSVGLSNFFINKFTELG-GQVKRVF-FRS---GDQDFSAQLSVAMSFNPDAIYI 210 (366)
T ss_dssp TTCH-------HHHHHHHHHHHHHHHTT-CEEEEEE-ECT---TCCCCHHHHHHHHHTCCSEEEE
T ss_pred CCCc-------HHHHHHHHHHHHHHHCC-CEEEEEE-eCC---CCccHHHHHHHHHhcCCCEEEE
Confidence 4321 24456677888888775 3444444 543 23356666777664 5677766
No 28
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=99.33 E-value=5.6e-12 Score=97.95 Aligned_cols=132 Identities=11% Similarity=0.131 Sum_probs=97.6
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHH-HHcCCcEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSIL-KNFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll-~~f~W~~v~~i~ 90 (159)
.++++++|||.++..+..++.++..+++|+|++++.++.+.++ .+++++|+.|++..++.++++.+ +++||+++++|+
T Consensus 67 ~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~ 145 (346)
T 1usg_A 67 NDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQR-GYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIH 145 (346)
T ss_dssp HTTCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCCCGGGGSS-CCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEE
T ss_pred hCCCCEEEcCCCcHHHHHHHHHHHHCCCeEEeeCCCChHHhcC-CCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4689999999999888888899999999999988776666554 37889999999999999999988 568999999999
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
.++. .+....+.+.+.+++.+ +.++....+... ..++.+.++++++ ..++|++.
T Consensus 146 ~~~~--------~~~~~~~~~~~~l~~~g-~~v~~~~~~~~~---~~d~~~~~~~l~~~~~d~i~~~ 200 (346)
T 1usg_A 146 DKQQ--------YGEGLARSVQDGLKAAN-ANVVFFDGITAG---EKDFSALIARLKKENIDFVYYG 200 (346)
T ss_dssp CSSH--------HHHHHHHHHHHHHHHTT-CCEEEEEECCTT---CCCCHHHHHHHHHTTCCEEEEE
T ss_pred CCCc--------hHHHHHHHHHHHHHHcC-CEEEEEeccCCC---CcCHHHHHHHHHhcCCCEEEEc
Confidence 7543 24456777778887764 344333344331 2244556666653 56777664
No 29
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=99.33 E-value=1e-11 Score=97.20 Aligned_cols=131 Identities=12% Similarity=0.046 Sum_probs=99.8
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
.+++++||||.++..+..++.++..+++|+|++++..+.+.++. ++++|+.|++...+.++++.+...||+++++|+.
T Consensus 70 ~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~ 147 (358)
T 3hut_A 70 DPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS--PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGV 147 (358)
T ss_dssp CTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC--TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCcccccCC--CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEec
Confidence 67899999999999888899999999999999888776666543 7899999999999999999998889999999996
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
++. .+....+.+.+.+++.+ +.++....+.. ...++...++++++ ..++|++.
T Consensus 148 ~~~--------~~~~~~~~~~~~l~~~g-~~v~~~~~~~~---~~~~~~~~~~~l~~~~~d~i~~~ 201 (358)
T 3hut_A 148 TTD--------WGLSSAQAFRKAFELRG-GAVVVNEEVPP---GNRRFDDVIDEIEDEAPQAIYLA 201 (358)
T ss_dssp SSH--------HHHHHHHHHHHHHHHTT-CEEEEEEEECT---TCCCCHHHHHHHHHHCCSEEEEE
T ss_pred CcH--------HHHHHHHHHHHHHHHcC-CEEEEEEecCC---CCccHHHHHHHHHhcCCCEEEEc
Confidence 553 25567788888888775 34444444433 22345556666653 45555544
No 30
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.33 E-value=6.1e-12 Score=99.01 Aligned_cols=132 Identities=9% Similarity=0.030 Sum_probs=100.1
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCC-cccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFEL-KFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~-~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
+++++||||.++..+..++.++..+++|+|++++..+.+.+ ...+++++|+.|++...+.++++.+..+||+++++|+.
T Consensus 88 ~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~ 167 (386)
T 3sg0_A 88 EKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGF 167 (386)
T ss_dssp SCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cCceEEECCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEec
Confidence 37999999999999999999999999999998887666653 44678999999999999999999999999999999987
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
++.+ +....+.+.+.+++.+ +.++....+... ..++...++++++ ..++|++.
T Consensus 168 ~~~~--------~~~~~~~~~~~l~~~g-~~v~~~~~~~~~---~~d~~~~~~~~~~~~~dav~~~ 221 (386)
T 3sg0_A 168 SDAY--------GEGYYKVLAAAAPKLG-FELTTHEVYARS---DASVTGQVLKIIATKPDAVFIA 221 (386)
T ss_dssp SSHH--------HHHHHHHHHHHHHHHT-CEECCCEEECTT---CSCCHHHHHHHHHTCCSEEEEE
T ss_pred CchH--------HHHHHHHHHHHHHHcC-CEEEEEEeeCCC---CCcHHHHHHHHHhcCCCEEEEe
Confidence 6542 5556777888887764 344333444432 2345566666653 45666544
No 31
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.25 E-value=4.4e-11 Score=93.19 Aligned_cols=128 Identities=12% Similarity=0.054 Sum_probs=96.6
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEeC
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNY 93 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~~ 93 (159)
++.+||||.++..+..+..++..+++|+|++++. + . ....+++++|+.|++...+.++++.+..+||+++++|+.++
T Consensus 69 ~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~ 145 (362)
T 3snr_A 69 KADVIMGSSVTPPSVAISNVANEAQIPHIALAPL-P-I-TPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSD 145 (362)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCC-C-C-CTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred CceEEEcCCCcHHHHHHHHHHHHcCccEEEecCC-c-c-ccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 8999999999998888999999999999998766 3 2 33457889999999999999999999999999999998765
Q ss_pred CCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 94 GQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
.+ +....+.+.+.+++.+ +.++....+... ..++...++++++ ...+|++.
T Consensus 146 ~~--------~~~~~~~~~~~l~~~g-~~v~~~~~~~~~---~~~~~~~~~~l~~~~~dav~~~ 197 (362)
T 3snr_A 146 SY--------GDLWFNDLKKQGEAMG-LKIVGEERFARP---DTSVAGQALKLVAANPDAILVG 197 (362)
T ss_dssp HH--------HHHHHHHHHHHHHHTT-CEEEEEEEECTT---CSCCHHHHHHHHHHCCSEEEEE
T ss_pred hH--------HHHHHHHHHHHHHHcC-CEEEEEeecCCC---CCCHHHHHHHHHhcCCCEEEEe
Confidence 32 5557788888888775 344444444432 2344555555543 55666654
No 32
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=99.19 E-value=7e-11 Score=93.80 Aligned_cols=128 Identities=11% Similarity=-0.020 Sum_probs=97.2
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH-cCCcEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN-FNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~-f~W~~v~~i~ 90 (159)
.++|.+||| .++..+..++.++..+++|+|+.++... +. .+++++|+.|++..++.++++.+.. |+|+++++|+
T Consensus 74 ~~~V~~iiG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~---~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~ 148 (391)
T 3eaf_A 74 RYGVIAIIG-WGTADTEKLSDQVDTDKITYISASYSAK-LL---VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAY 148 (391)
T ss_dssp TTCCSEEEE-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT---TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred hcCcEEEEE-cCcHHHHHHHHHHhhcCCeEEecccchh-hc---CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 578999999 5888888899999999999999776543 22 4688999999999999999998877 7999999999
Q ss_pred E-eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHH--Hhc-CceEEEee
Q psy8570 91 N-NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIA--ITK-RARIIKSL 156 (159)
Q Consensus 91 ~-~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~--~~~-~aRIii~~ 156 (159)
. ++.+ +....+.+.+.+++.+ +.++....+.. ...++...+++ ++. ...+|++.
T Consensus 149 ~~~~~~--------g~~~~~~~~~~l~~~G-~~v~~~~~~~~---~~~d~~~~~~~~~l~~~~~dav~~~ 206 (391)
T 3eaf_A 149 DSKVAY--------SRSPIGAIKKAAPSLG-LQVVGDYDLPL---RATEADAERIAREMLAADPDYVWCG 206 (391)
T ss_dssp CTTCHH--------HHTTHHHHHHHTGGGT-EEEEEEEECCT---TCCHHHHHHHHHHHHTTCCSEEEEC
T ss_pred ecCChh--------HHHHHHHHHHHHHHcC-CceeeeeccCC---CCcCHHHHHHHHHHHHcCCCEEEEe
Confidence 8 5432 5566788888888775 34444344433 33467788877 765 56766654
No 33
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=99.14 E-value=1.1e-10 Score=92.60 Aligned_cols=130 Identities=8% Similarity=-0.047 Sum_probs=95.1
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH-cCCcEEEEEEE
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN-FNWTVAGFMFN 91 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~-f~W~~v~~i~~ 91 (159)
.+|.+||| .++..+..++.++...++|+|+..+.. .+.++..+++++|+.|++..++.++++.+.. ++|+++++|+.
T Consensus 74 ~~V~~iig-~~s~~~~~~~~~~~~~~iP~i~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~ 151 (392)
T 3lkb_A 74 FKIPVFLS-YATGANLQLKPLIQELRIPTIPASMHI-ELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVH 151 (392)
T ss_dssp TCCSCEEE-CCHHHHHHHHHHHHHHTCCEEESCCCG-GGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred cCcEEEEe-CCcHHHHHHHHHHHhCCceEEecccCh-hhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 38999999 578888888999999999999976543 3444446788999999999999999988766 79999999997
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
++.+ +....+.+.+.+++.+ +.++....+.. ...++...++++++ ...+|++.
T Consensus 152 ~~~~--------g~~~~~~~~~~l~~~G-~~v~~~~~~~~---~~~d~~~~~~~l~~~~~dav~~~ 205 (392)
T 3lkb_A 152 PSPF--------GRAPVEDARKAARELG-LQIVDVQEVGS---GNLDNTALLKRFEQAGVEYVVHQ 205 (392)
T ss_dssp SSHH--------HHTTHHHHHHHHHHHT-CEEEEEEECCT---TCCCCHHHHHHHHHTTCCEEEEE
T ss_pred CCch--------hhhHHHHHHHHHHHcC-CeEEEEEeeCC---CCcCHHHHHHHHHhcCCCEEEEe
Confidence 6542 4556777888887764 34444444433 22356666777664 56666653
No 34
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=99.02 E-value=1.7e-09 Score=84.45 Aligned_cols=130 Identities=12% Similarity=0.043 Sum_probs=91.0
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
+.++.+++||.||..+..++.++..+++|+|++++..+.+.+. .++++|+.|++..++.+++..+...+|.+..+++.
T Consensus 73 ~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (353)
T 4gnr_A 73 QSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKG--QDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYT 150 (353)
T ss_dssp TSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTTT--CTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEE
T ss_pred hCCceEEeccccCcccceehhhhhccCcceEeecccccccccC--CccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 4568899999999999999999999999999999888877654 45679999999999999999988766655445444
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
++.. ..+....+.+.+.+ + ..++....+.. ...|+...+.+++. .+++|++.
T Consensus 151 ~~~~------~yg~~~~~~~~~~~---g-~~vv~~~~~~~---~~~d~~~~l~~i~~~~~d~v~~~ 203 (353)
T 4gnr_A 151 DNAS------DYAKGIAKSFRESY---K-GEIVADETFVA---GDTDFQAALTKMKGKDFDAIVVP 203 (353)
T ss_dssp ETTC------HHHHHHHHHHHHHC---C-SEEEEEEEECT---TCCCCHHHHHHHHTSCCSEEECC
T ss_pred cCch------HHHHHHHHHHHHHc---C-CEEEEEEeeCC---CCCCHHHHHHHHHhcCCCEEEEe
Confidence 4321 01222233333222 2 24455555554 23467788888875 67877654
No 35
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=98.96 E-value=1e-08 Score=81.10 Aligned_cols=130 Identities=9% Similarity=-0.089 Sum_probs=94.5
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN 92 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~ 92 (159)
++++++|||.++..+..+..++..+++|+|+.+... +...+++++|+.+++...+..+++.+...+|+++++|+.+
T Consensus 74 ~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 149 (385)
T 1pea_A 74 RGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYE----GFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSD 149 (385)
T ss_dssp TCCCEEEECCSHHHHHHHHHHHHHTTCEEEECSCCC----CCCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEES
T ss_pred CCcEEEECCCchHHHHHHHHHHHhcCceEEECCccc----CccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCC
Confidence 789999999998877788888999999999877542 1123567899999999999999999998899999999975
Q ss_pred CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570 93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL 156 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~ 156 (159)
+. .+....+++.+.+++.+ +.++....+... ....++...++++++ ..++|++.
T Consensus 150 ~~--------~~~~~~~~~~~~l~~~G-~~v~~~~~~~~~-~~~~d~~~~~~~l~~~~pdaI~~~ 204 (385)
T 1pea_A 150 YI--------YPRESNHVMRHLYRQHG-GTVLEEIYIPLY-PSDDDLQRAVERIYQARADVVFST 204 (385)
T ss_dssp SH--------HHHHHHHHHHHHHHHTT-CEEEEEEEECSS-CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred Ch--------HHHHHHHHHHHHHHHcC-CEEEEEEeecCC-CCcchHHHHHHHHHHCCCCEEEEe
Confidence 42 24456777888887764 333322233221 145577778877764 56666654
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=98.59 E-value=2.9e-07 Score=72.16 Aligned_cols=129 Identities=6% Similarity=-0.010 Sum_probs=92.5
Q ss_pred cceeeEEEECCCCchhHHHHHHHH-hccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYS-GVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM 89 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~-~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i 89 (159)
...++.+|+||.++..+..++..+ ...++|+|+..+...... ....+.+|+.| .+++.++++.+..-+.++++++
T Consensus 53 ~~~~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~~~~~~--~~~~~~f~~~~--~~~~~~~a~~a~~~g~k~vail 128 (325)
T 2h4a_A 53 KQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNSRA--IPQLCYYGLSP--EDEAESAANKMWNDGVRNPLVA 128 (325)
T ss_dssp HHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCSSCCC--CTTEEECCCCH--HHHHHHHHHHHHHTTCCSCEEE
T ss_pred HHCCCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCCccccC--CCCeEEEECCH--HHHHHHHHHHHHHcCCCeEEEE
Confidence 467899999999999998888888 678999998766432111 12345566554 4468888888877899999999
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEee
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSL 156 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~ 156 (159)
+.++++ +....+.+.+.+++.+. .++..+.+.. . .++...|++++.+...|++.
T Consensus 129 ~~~~~y--------G~~~~~~F~~~~~~~Gg-~vv~~~~y~~---~-~d~~~~l~~i~~~pDaV~~~ 182 (325)
T 2h4a_A 129 MPQNDL--------GQRVGNAFNVRWQQLAG-TDANIRYYNL---P-ADVTYFVQENNSNTTALYAV 182 (325)
T ss_dssp EESSHH--------HHHHHHHHHHHHHHHHS-SCCEEEEESS---T-THHHHHHHHSTTCCCEEEEC
T ss_pred EcCCcH--------HHHHHHHHHHHHHHcCC-CcceeEecCC---H-HHHHHHHHhcCCCCCEEEEe
Confidence 987754 45566777777776642 4555555543 2 58889999886666666554
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=98.38 E-value=1.9e-06 Score=66.82 Aligned_cols=108 Identities=10% Similarity=0.013 Sum_probs=78.2
Q ss_pred cceeeEEEECCCCchhHHHHHHH-HhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARY-SGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM 89 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~-~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i 89 (159)
...++.+||||.++..+..++.. +....+|+++....... ...+.++|+.+++..++.+++..+..-++++++++
T Consensus 55 ~~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~~----~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii 130 (327)
T 3ckm_A 55 KQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNS----RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVA 130 (327)
T ss_dssp HHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTTC----CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEE
T ss_pred HHcCCeEEEEccccccchhhHHHHHhccCceEeccCcCccc----ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEE
Confidence 35689999999998877665554 45556777665443322 12356799999999999999999999999999999
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeec
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDE 131 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~ 131 (159)
+.++++ +....+.+.+.+++.+. .++....+..
T Consensus 131 ~~~~~y--------g~~~~~~f~~~~~~~Gg-~vv~~~~~~~ 163 (327)
T 3ckm_A 131 MPQNDL--------GQRVGNAFNVRWQQLAG-TDANIRYYNL 163 (327)
T ss_dssp EESSHH--------HHHHHHHHHHHHHHHHS-SCCEEEEESS
T ss_pred ecCChH--------HHHHHHHHHHHHHHCCC-eEEEEEECCC
Confidence 998764 45566777777777652 4555555543
No 38
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.46 E-value=0.2 Score=36.68 Aligned_cols=37 Identities=14% Similarity=-0.044 Sum_probs=31.8
Q ss_pred ccceeeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
.-+.+++.++||+.+.=......++..+++|+|+.|-
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGd 62 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGD 62 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHH
Confidence 3456788999999999888888999999999998763
No 39
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=88.83 E-value=4.4 Score=29.52 Aligned_cols=95 Identities=7% Similarity=-0.008 Sum_probs=55.6
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|....+.....+..+....++|+|..+.... + . .+..+...+...+...++.|..-|.++++++..
T Consensus 75 ~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~---~-~---~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~ 147 (296)
T 3brq_A 75 DLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLR---K-N---SSHSVWCDHKQTSFNAVAELINAGHQEIAFLTG 147 (296)
T ss_dssp HTTCSEEEEECSSSCHHHHHHHHHTCSSCEEEESCCCS---S-S---GGGEECCCHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred hcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEccccC---C-C---CCCEEEEchHHHHHHHHHHHHHCCCceEEEEcC
Confidence 45677777543332233344443327999998764322 1 1 123455666666666666666669999999976
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.... .....+.++..+.+++.+
T Consensus 148 ~~~~------~~~~~R~~gf~~~l~~~g 169 (296)
T 3brq_A 148 SMDS------PTSIERLAGYKDALAQHG 169 (296)
T ss_dssp CTTC------HHHHHHHHHHHHHHHTTT
T ss_pred CCCC------ccHHHHHHHHHHHHHHcC
Confidence 4321 123456777777777764
No 40
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=87.91 E-value=3.1 Score=30.39 Aligned_cols=93 Identities=12% Similarity=0.037 Sum_probs=60.2
Q ss_pred ceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH--cCCcEEEE
Q psy8570 12 VVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN--FNWTVAGF 88 (159)
Q Consensus 12 ~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~--f~W~~v~~ 88 (159)
..+++++| .|..+.........+...++|+|..+.... + .+..+...+...++..++.|.. -|-+++++
T Consensus 59 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~-----~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~ 130 (291)
T 3l49_A 59 AQKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATP---H-----AINNTTSNNYSIGAELALQMVADLGGKGNVLV 130 (291)
T ss_dssp HHCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCT---T-----CSEEEEECHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HcCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCC---C-----cCceEecChHHHHHHHHHHHHHHcCCCceEEE
Confidence 45677766 565544455555666667999998775431 1 2345666777777777777766 78899999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
+....+ ......+.+++.+.+++.
T Consensus 131 i~~~~~------~~~~~~R~~gf~~~l~~~ 154 (291)
T 3l49_A 131 FNGFYS------VPVCKIRYDQMKYVLEAF 154 (291)
T ss_dssp ECSCTT------SHHHHHHHHHHHHHHHTC
T ss_pred EeCCCC------CchHHHHHHHHHHHHHHC
Confidence 964332 122344677888888776
No 41
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.68 E-value=0.37 Score=34.78 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=27.4
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
..++||+.+.=......++..+++|+||.|-
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~istGd 33 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGD 33 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEcHHH
Confidence 5788999998888889999999999998763
No 42
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=86.40 E-value=7.1 Score=28.67 Aligned_cols=100 Identities=11% Similarity=0.043 Sum_probs=63.8
Q ss_pred cceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC--CcEEE
Q psy8570 11 FVVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN--WTVAG 87 (159)
Q Consensus 11 ~~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~--W~~v~ 87 (159)
...+++++| .|............+...++|+|..+....... ..+.+..+...+...++..++.|..-+ -++++
T Consensus 58 ~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~---~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~ 134 (297)
T 3rot_A 58 LATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKT---KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRAL 134 (297)
T ss_dssp HHTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTT---TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCcccc---ccCcceEEccChHHHHHHHHHHHHHhcCCCceEE
Confidence 345677666 666555445555666677999998775433211 112345566777777777777776666 88999
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
++....+ ......+.++..+.+++.+
T Consensus 135 ~i~g~~~------~~~~~~R~~Gf~~~l~~~g 160 (297)
T 3rot_A 135 VLNPQPG------HIGLEKRAYGIKTILQDKG 160 (297)
T ss_dssp EEESCTT------CHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCC------cHHHHHHHHHHHHHHHhcC
Confidence 9875432 1234456788888888764
No 43
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=83.39 E-value=10 Score=27.44 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=52.8
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|.-........+..+....++|+|..+..... ..+ ...+.+.+...+...++.|...|.++++++..
T Consensus 61 ~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~----~~~--~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~ 134 (289)
T 1dbq_A 61 QKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAK----ADF--TDAVIDNAFEGGYMAGRYLIERGHREIGVIPG 134 (289)
T ss_dssp HTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECSSCC----SSS--CEEEEECHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred hCCCCEEEEEeccCCHHHHHHHHhccCCCEEEEccCCCc----cCc--CCEEEeCcHHHHHHHHHHHHHCCCCeEEEEec
Confidence 456777764222222222333333368999987653221 111 23456666667777777666669999999975
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+. .....+.+++.+.+++.+
T Consensus 135 ~~~~------~~~~~R~~g~~~~l~~~g 156 (289)
T 1dbq_A 135 PLER------NTGAGRLAGFMKAMEEAM 156 (289)
T ss_dssp C------------CHHHHHHHHHHHHTT
T ss_pred CCcc------ccHHHHHHHHHHHHHHCC
Confidence 4321 112345667777776653
No 44
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=82.36 E-value=12 Score=26.97 Aligned_cols=95 Identities=11% Similarity=0.051 Sum_probs=53.6
Q ss_pred eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570 9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF 88 (159)
Q Consensus 9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~ 88 (159)
....++++++|......... ....+...++|+|..+.... + +..+...+...++..++.|...|-+++++
T Consensus 50 ~l~~~~vdgiI~~~~~~~~~-~~~~~~~~~iPvV~~~~~~~---~------~~~V~~d~~~~~~~a~~~L~~~G~~~i~~ 119 (276)
T 2h0a_A 50 TTLAYLTDGLILASYDLTER-FEEGRLPTERPVVLVDAQNP---R------YDSVYLDNRLGGRLAGAYLARFPGPIFAI 119 (276)
T ss_dssp ----CCCSEEEEESCCCC-------CCSCSSCEEEESSCCT---T------SEEEEECSHHHHHHHHHHHTTSSSCEEEE
T ss_pred HHHhCCCCEEEEecCCCCHH-HHHHHhhcCCCEEEEeccCC---C------CCEEEEccHHHHHHHHHHHHHcCCCeEEE
Confidence 33456777776433322222 22334557899998764321 1 34566666667777777776679999999
Q ss_pred EEEeC-C---CcCCCCCCchH-hHHHHHHHHHcCCC
Q psy8570 89 MFNNY-G---QTTGKGNSNCW-FTIASVYKIITSPS 119 (159)
Q Consensus 89 i~~~~-~---~~~~~~~~~~~-~~~~~L~~~l~~~~ 119 (159)
+.... + . .... .+.++..+.+++.+
T Consensus 120 i~~~~~~~~~~------~~~~~~R~~gf~~~l~~~g 149 (276)
T 2h0a_A 120 AVEEEPDRAFR------RTVFAERMAGFQEALKEAG 149 (276)
T ss_dssp EECCSCCC---------CCHHHHHHHHHHHHHHHTT
T ss_pred EecCccccccc------chhHHHHHHHHHHHHHHcC
Confidence 97653 2 1 1244 56777777776653
No 45
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=82.17 E-value=3.3 Score=30.33 Aligned_cols=93 Identities=12% Similarity=0.036 Sum_probs=55.7
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
...+++++|..........+..+ .++|+|..+..... +.+..+...+...++..++.|..-|-++++++.
T Consensus 60 ~~~~vdgiI~~~~~~~~~~~~~l---~~iPvV~~~~~~~~-------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~ 129 (288)
T 2qu7_A 60 VSQNVSAIILVPVKSKFQMKREW---LKIPIMTLDRELES-------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLL 129 (288)
T ss_dssp HHTTEEEEEECCSSSCCCCCGGG---GGSCEEEESCCCSS-------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEE
T ss_pred HHcCccEEEEecCCCChHHHHHh---cCCCEEEEecccCC-------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEe
Confidence 34678888765443222222233 78999987653221 123455667777777777777667999999997
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
...+. .....+.+++.+.+++.+
T Consensus 130 ~~~~~------~~~~~R~~gf~~~l~~~g 152 (288)
T 2qu7_A 130 ANPNI------STTIGRKNGYNKAISEFD 152 (288)
T ss_dssp CCTTS------HHHHHHHHHHHHHHHHTT
T ss_pred cCCCC------CCHHHHHHHHHHHHHHcC
Confidence 64321 123445677777776653
No 46
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=80.52 E-value=11 Score=27.42 Aligned_cols=94 Identities=10% Similarity=-0.094 Sum_probs=52.7
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
...+++++|..........+. .+...++|+|..+..... + +..+...+...++..++.|..-|-++++++.
T Consensus 62 ~~~~vdgiI~~~~~~~~~~~~-~l~~~~iPvV~~~~~~~~-------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~ 132 (290)
T 3clk_A 62 IERPVMGILLLSIALTDDNLQ-LLQSSDVPYCFLSMGFDD-------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAG 132 (290)
T ss_dssp HSSCCSEEEEESCC----CHH-HHHCC--CEEEESCC--C-------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEES
T ss_pred HhcCCCEEEEecccCCHHHHH-HHHhCCCCEEEEcCCCCC-------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEe
Confidence 345677776433322222233 344578999987653221 1 3345667767777777777667999999997
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
...+ ......+.+++.+.+++.+
T Consensus 133 ~~~~------~~~~~~R~~gf~~~l~~~g 155 (290)
T 3clk_A 133 IDQY------PYTGRKRLAGYKKALKEAN 155 (290)
T ss_dssp CCCC------TTTHHHHHHHHHHHHHHTT
T ss_pred CCCC------CcchHHHHHHHHHHHHHcC
Confidence 5432 1224456777777776653
No 47
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=78.46 E-value=17 Score=26.62 Aligned_cols=92 Identities=13% Similarity=0.047 Sum_probs=56.7
Q ss_pred ceeeEEEECCCCchhHH-HHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIA-PVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~-~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..+++++|--....... .+..+.. ++|+|..+..... . +..+...+..-++..++.|..-|-++++++.
T Consensus 69 ~~~vdgiI~~~~~~~~~~~~~~l~~--~iPvV~i~~~~~~-----~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~ 138 (303)
T 3kke_A 69 EGRVDGVLLQRREDFDDDMLAAVLE--GVPAVTINSRVPG-----R---VGSVILDDQKGGGIATEHLITLGHSRIAFIS 138 (303)
T ss_dssp SCSSSEEEECCCTTCCHHHHHHHHT--TSCEEEESCCCTT-----C---CCEEEECHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred hCCCcEEEEecCCCCcHHHHHHHhC--CCCEEEECCcCCC-----C---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 45677766433333333 4555555 9999987754321 1 2345566666677777767667999999997
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
...+. .....+.++..+.+++.+
T Consensus 139 ~~~~~------~~~~~R~~Gf~~al~~~g 161 (303)
T 3kke_A 139 GTAIH------DTAQRRKEGYLETLASAG 161 (303)
T ss_dssp SCSSC------HHHHHHHHHHHHHHHHTT
T ss_pred CCCcC------ccHHHHHHHHHHHHHHcC
Confidence 64321 224456777777777654
No 48
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=78.13 E-value=12 Score=28.04 Aligned_cols=95 Identities=7% Similarity=0.000 Sum_probs=58.7
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|--........+..++...++|+|..+..... .. +..+...+..-+...++-|..-|.++++++..
T Consensus 117 ~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~----~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 189 (338)
T 3dbi_A 117 DLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRK----NS---SHSVWCDHKQTSFNAVAELINAGHQEIAFLTG 189 (338)
T ss_dssp HTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSS----SG---GGEECBCHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred hCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCC----CC---CCEEEEChHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 456777764333333445667777889999987653321 11 22355666666666666666679999999975
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+ ......+.++..+.+++.+
T Consensus 190 ~~~------~~~~~~R~~Gf~~al~~~g 211 (338)
T 3dbi_A 190 SMD------SPTSIERLAGYKDALAQHG 211 (338)
T ss_dssp CTT------CHHHHHHHHHHHHHHHHTT
T ss_pred CCC------CccHHHHHHHHHHHHHHCC
Confidence 432 1223456777777777654
No 49
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=77.52 E-value=18 Score=26.27 Aligned_cols=94 Identities=9% Similarity=-0.039 Sum_probs=53.7
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|.-........+. .+...++|+|..+.... + .. +..+...+..-++..++.|..-|-++++++..
T Consensus 62 ~~~vdgiIi~~~~~~~~~~~-~l~~~~iPvV~~~~~~~---~-~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~ 133 (287)
T 3bbl_A 62 SGNVDGFVLSSINYNDPRVQ-FLLKQKFPFVAFGRSNP---D-WD---FAWVDIDGTAGTRQAVEYLIGRGHRRIAILAW 133 (287)
T ss_dssp TTCCSEEEECSCCTTCHHHH-HHHHTTCCEEEESCCST---T-CC---CCEEEECHHHHHHHHHHHHHHHTCCCEEEEEC
T ss_pred cCCCCEEEEeecCCCcHHHH-HHHhcCCCEEEECCcCC---C-CC---CCEEEeccHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 45677776433322222333 33447999998765322 1 11 23455666666666666665569999999976
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+. .....+.++..+.+++.+
T Consensus 134 ~~~~------~~~~~R~~Gf~~~l~~~g 155 (287)
T 3bbl_A 134 PEDS------RVGNDRLQGYLEAMQTAQ 155 (287)
T ss_dssp CTTC------HHHHHHHHHHHHHHHHTT
T ss_pred Cccc------ccHHHHHHHHHHHHHHcC
Confidence 5321 123445677777776653
No 50
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=76.47 E-value=18 Score=26.09 Aligned_cols=94 Identities=6% Similarity=-0.049 Sum_probs=58.2
Q ss_pred ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570 10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM 89 (159)
Q Consensus 10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i 89 (159)
....+++++|--........+... ...++|+|..+...+ .+..+...+..-++..++.|..-|-++++++
T Consensus 64 l~~~~vdgiIi~~~~~~~~~~~~~-~~~~iPvV~~~~~~~---------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i 133 (289)
T 3g85_A 64 SKENSFDAAIIANISNYDLEYLNK-ASLTLPIILFNRLSN---------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAI 133 (289)
T ss_dssp STTTCCSEEEESSCCHHHHHHHHH-CCCSSCEEEESCCCS---------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEE
T ss_pred HhccCCCEEEEecCCcccHHHHHh-ccCCCCEEEECCCCC---------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 345677777644333333223222 356899998775321 1235666777777777777777799999999
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
....+. .....+.++..+.+++.+
T Consensus 134 ~~~~~~------~~~~~R~~gf~~~l~~~~ 157 (289)
T 3g85_A 134 LTESLN------DAMDNRNKGFIETCHKNG 157 (289)
T ss_dssp ECCCSS------HHHHHHHHHHHHHHHHTT
T ss_pred eCCccc------ccHHHHHHHHHHHHHHcC
Confidence 765421 224456777777777764
No 51
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=75.92 E-value=19 Score=25.68 Aligned_cols=94 Identities=9% Similarity=-0.042 Sum_probs=58.2
Q ss_pred ceeeEEEEC-CCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 12 VVCVDAFLG-PVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aiiG-p~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..+++++|- |..+.. ......+...++|+|..+..... +.+..+...+..-++..++.|..-|-++++++.
T Consensus 56 ~~~vdgiIi~~~~~~~-~~~~~~~~~~~iPvV~~~~~~~~-------~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~ 127 (272)
T 3o74_A 56 ARRCDALFVASCLPPE-DDSYRELQDKGLPVIAIDRRLDP-------AHFCSVISDDRDASRQLAASLLSSAPRSIALIG 127 (272)
T ss_dssp HTTCSEEEECCCCCSS-CCHHHHHHHTTCCEEEESSCCCT-------TTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HcCCCEEEEecCcccc-HHHHHHHHHcCCCEEEEccCCCc-------cccCEEEEchHHHHHHHHHHHHHCCCcEEEEEe
Confidence 456666653 333222 22334455579999987653321 112345666767777777777777999999998
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
...+. .....+.++..+.+++.+
T Consensus 128 ~~~~~------~~~~~R~~gf~~~l~~~~ 150 (272)
T 3o74_A 128 ARPEL------SVSQARAGGFDEALQGYT 150 (272)
T ss_dssp ECTTS------HHHHHHHHHHHHHTTTCC
T ss_pred cCCCC------ccHHHHHHHHHHHHHHcC
Confidence 75432 234556788888888764
No 52
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=73.71 E-value=23 Score=25.59 Aligned_cols=95 Identities=8% Similarity=-0.019 Sum_probs=58.2
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|--...... .....+...++|+|..+...... +.+..+...+..-++..++.|..-|-++++++..
T Consensus 67 ~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~ 139 (292)
T 3k4h_A 67 GRQIGGIILLYSREND-RIIQYLHEQNFPFVLIGKPYDRK------DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGG 139 (292)
T ss_dssp TTCCCEEEESCCBTTC-HHHHHHHHTTCCEEEESCCSSCT------TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cCCCCEEEEeCCCCCh-HHHHHHHHCCCCEEEECCCCCCC------CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeC
Confidence 4567776633222222 33344556799999876543211 1134466777777777777777779999999976
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+. .....+.+++.+.+++.+
T Consensus 140 ~~~~------~~~~~R~~gf~~~l~~~g 161 (292)
T 3k4h_A 140 GSDL------LVTRDRLAGMSDALKLAD 161 (292)
T ss_dssp CTTB------HHHHHHHHHHHHHHHHTT
T ss_pred cccc------hhHHHHHHHHHHHHHHcC
Confidence 5431 223456777777777664
No 53
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=73.68 E-value=23 Score=25.71 Aligned_cols=93 Identities=8% Similarity=-0.051 Sum_probs=57.6
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
...+++++|--........+..+ .. ++|+|..+..... +.+..+...+..-++..++.|..-|-++++++.
T Consensus 63 ~~~~vdgiIi~~~~~~~~~~~~~-~~-~iPvV~i~~~~~~-------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 133 (289)
T 3k9c_A 63 MRERCEAAILLGTRFDTDELGAL-AD-RVPALVVARASGL-------PGVGAVRGDDVAGITLAVDHLTELGHRNIAHID 133 (289)
T ss_dssp TTTTEEEEEEETCCCCHHHHHHH-HT-TSCEEEESSCCSS-------TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred HhCCCCEEEEECCCCCHHHHHHH-Hc-CCCEEEEcCCCCC-------CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEe
Confidence 44677776633332233444444 34 9999987653221 122456666766777777777777999999997
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.... .....+.++..+.+++.+
T Consensus 134 ~~~~-------~~~~~R~~Gf~~al~~~g 155 (289)
T 3k9c_A 134 GADA-------PGGADRRAGFLAAMDRHG 155 (289)
T ss_dssp CTTS-------TTHHHHHHHHHHHHHHTT
T ss_pred CCCC-------ccHHHHHHHHHHHHHHCC
Confidence 6442 134556778888887764
No 54
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=72.35 E-value=25 Score=26.16 Aligned_cols=95 Identities=11% Similarity=0.012 Sum_probs=54.9
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
...+++++|..........+. .+...++|+|..+.... + ..+ ..+...+..-+...++-|..-|.++++++.
T Consensus 113 ~~~~vdgiI~~~~~~~~~~~~-~l~~~~iPvV~~~~~~~---~-~~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 184 (332)
T 2hsg_A 113 LGKQVDGIIFMSGNVTEEHVE-ELKKSPVPVVLAASIES---T-NQI---PSVTIDYEQAAFDAVQSLIDSGHKNIAFVS 184 (332)
T ss_dssp SCCSSCCEEECCSSCCHHHHH-HHTTSSSCEEEESCCCS---C-TTS---CEEEECHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred HhCCCcEEEEecCCCCHHHHH-HHHhCCCCEEEEccccC---C-CCC---CEEEEChHHHHHHHHHHHHHCCCCEEEEEe
Confidence 456788776433332223333 34457899998765322 1 112 345556655666666666666999999997
Q ss_pred EeC-CCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 91 NNY-GQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 91 ~~~-~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
... +. .....+.++..+.+++.+
T Consensus 185 ~~~~~~------~~~~~R~~Gf~~al~~~g 208 (332)
T 2hsg_A 185 GTLEEP------INHAKKVKGYKRALTESG 208 (332)
T ss_dssp SCTTSH------HHHTTHHHHHHHHHHTTT
T ss_pred CCcccC------ccHHHHHHHHHHHHHHcC
Confidence 643 21 112345677777777764
No 55
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=71.97 E-value=27 Score=25.68 Aligned_cols=98 Identities=11% Similarity=0.012 Sum_probs=50.8
Q ss_pred ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCC---CC--cccCCeeEEeeCChhhHHHHHHHHHHHc--C
Q psy8570 10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANF---EL--KFEYPTLTRMMGSFSLVGQAVQSILKNF--N 82 (159)
Q Consensus 10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l---~~--~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~ 82 (159)
...+++++||..... ....+.. ...++|+|..+...+.. -. ...-..+....- ... ....++++... |
T Consensus 65 l~~~~vDgII~~~~~-~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~-~~~-~~~~~~~l~~~~Pg 139 (302)
T 2qh8_A 65 FVGENPDVLVGIATP-TAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSD-LSP-VEQHVELIKEILPN 139 (302)
T ss_dssp HHHTCCSEEEEESHH-HHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEEC-CCC-HHHHHHHHHHHSTT
T ss_pred HHhCCCCEEEECChH-HHHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEEC-CcC-HHHHHHHHHHhCCC
Confidence 345678888865432 2222222 25689999765432211 00 000122233321 112 33345555554 9
Q ss_pred CcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 83 WTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 83 W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.+++++|+...+ .....+.+++.+.+++.+
T Consensus 140 ~~~I~~i~~~~~-------~~~~~r~~g~~~al~~~g 169 (302)
T 2qh8_A 140 VKSIGVVYNPGE-------ANAVSLMELLKLSAAKHG 169 (302)
T ss_dssp CCEEEEEECTTC-------HHHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEecCCC-------cchHHHHHHHHHHHHHcC
Confidence 999999986532 124456777878777764
No 56
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=71.75 E-value=26 Score=25.36 Aligned_cols=94 Identities=7% Similarity=-0.077 Sum_probs=55.6
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
...+++++|..........+..+ . .++|+|..+.... + . .+..+...+..-+...++.|..-|-++++++.
T Consensus 61 ~~~~vdgiI~~~~~~~~~~~~~l-~-~~iPvV~~~~~~~---~-~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~ 131 (285)
T 3c3k_A 61 SGKMVDGVITMDALSELPELQNI-I-GAFPWVQCAEYDP---L-S---TVSSVSIDDVAASEYVVDQLVKSGKKRIALIN 131 (285)
T ss_dssp HTTCCSEEEECCCGGGHHHHHHH-H-TTSSEEEESSCCT---T-S---SSCEEECCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HhCCCCEEEEeCCCCChHHHHHH-h-cCCCEEEEccccC---C-C---CCCEEEEChHHHHHHHHHHHHHcCCCeEEEEe
Confidence 34678887764443333334444 4 8999998765322 1 1 12345566666667667666666999999997
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
...+. .....+.++..+.+++.+
T Consensus 132 ~~~~~------~~~~~R~~gf~~~l~~~g 154 (285)
T 3c3k_A 132 HDLAY------QYAQHRESGYLNRLKFHG 154 (285)
T ss_dssp CCTTS------HHHHHHHHHHHHHHHHHT
T ss_pred CCCcc------ccHHHHHHHHHHHHHHcC
Confidence 65321 123345666666666653
No 57
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=71.41 E-value=29 Score=25.81 Aligned_cols=94 Identities=9% Similarity=-0.012 Sum_probs=54.0
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|..........+..+ ...++|+|..+.... + .. +..+...+..-+...++.|..-|.++++++..
T Consensus 117 ~~~vdgiI~~~~~~~~~~~~~l-~~~~iPvV~~~~~~~---~-~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 188 (332)
T 2o20_A 117 SKQVDGIVYMGSSLDEKIRTSL-KNSRTPVVLVGTIDG---D-KE---IPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMG 188 (332)
T ss_dssp HTTCSEEEECSSCCCHHHHHHH-HHHCCCEEEESCCCT---T-SC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEECS
T ss_pred hCCCCEEEEeCCCCCHHHHHHH-HhCCCCEEEEccccC---C-CC---CCEEEeChHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 4567777643322222233333 356899998765322 1 11 23455666666666666666669999999975
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+. .....+.++..+.+++.+
T Consensus 189 ~~~~------~~~~~R~~Gf~~al~~~g 210 (332)
T 2o20_A 189 SLKD------VENTERMVGYQEALLEAN 210 (332)
T ss_dssp CTTS------HHHHHHHHHHHHHHHHTT
T ss_pred Cccc------ccHHHHHHHHHHHHHHcC
Confidence 4321 123445677777776653
No 58
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=70.88 E-value=30 Score=25.71 Aligned_cols=101 Identities=8% Similarity=-0.105 Sum_probs=60.2
Q ss_pred ccee--eEEEECCCCchh-HHHHHHHHhccCCcEEccccCCCCCCCcccC--CeeEEeeCChhhHHHHHHHHHHH--cCC
Q psy8570 11 FVVC--VDAFLGPVCDYV-IAPVARYSGVWGIPVLTAGGLVANFELKFEY--PTLTRMMGSFSLVGQAVQSILKN--FNW 83 (159)
Q Consensus 11 ~~~~--v~aiiGp~~s~~-~~~va~~~~~~~iP~is~~~~~~~l~~~~~~--~~~~r~~p~~~~~~~a~~~ll~~--f~W 83 (159)
...+ ++++|....... .......+...++|+|..+........ ..+ +.+..+...+...++..++.|.. -|.
T Consensus 58 ~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~-~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~ 136 (332)
T 2rjo_A 58 LQKTGGNLVLNVDPNDSADARVIVEACSKAGAYVTTIWNKPKDLHP-WDYNPNYVAHLSYDGVAYGEETATQLFKSMGGK 136 (332)
T ss_dssp HHHTTTCEEEEECCSSHHHHHHHHHHHHHHTCEEEEESCCCTTCCG-GGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTC
T ss_pred HHCCCCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEECCCCCcccc-hhcccceeEEEccChHHHHHHHHHHHHHHcCCC
Confidence 3456 888775443332 223334445578999987654322111 112 24556777777777777766665 589
Q ss_pred cEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 84 TVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 84 ~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
+++++|....+. .....+.+++.+.+++.
T Consensus 137 ~~I~~i~g~~~~------~~~~~R~~Gf~~al~~~ 165 (332)
T 2rjo_A 137 GGVVALGGIFSN------VPAIERKAGLDAALKKF 165 (332)
T ss_dssp EEEEEEECCTTC------HHHHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCC------ccHHHHHHHHHHHHHhC
Confidence 999999765321 12445677888888776
No 59
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=70.32 E-value=28 Score=25.24 Aligned_cols=94 Identities=11% Similarity=0.016 Sum_probs=54.6
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|--........+..+ ...++|+|..+.... + +.+..+...+..-++..++.|..-|.++++++..
T Consensus 70 ~~~vdgiIi~~~~~~~~~~~~l-~~~~iPvV~~~~~~~---~----~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~ 141 (289)
T 2fep_A 70 GKQVDGIVFMGGNITDEHVAEF-KRSPVPIVLAASVEE---Q----EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSG 141 (289)
T ss_dssp HTTCSEEEECCSCCCHHHHHHH-HHSSSCEEEESCCCT---T----CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEES
T ss_pred hCCCCEEEEecCCCCHHHHHHH-HhcCCCEEEEccccC---C----CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 4567777643322222333333 457899998765322 1 1123456666667777777776679999999976
Q ss_pred eC-CCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NY-GQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~-~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.. +. .....+.++..+.+++.+
T Consensus 142 ~~~~~------~~~~~R~~Gf~~al~~~g 164 (289)
T 2fep_A 142 PMAEP------INRSKKLQGYKRALEEAN 164 (289)
T ss_dssp CTTSH------HHHTTHHHHHHHHHHHTT
T ss_pred Ccccc------ccHHHHHHHHHHHHHHcC
Confidence 43 21 112335667777776653
No 60
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=70.21 E-value=27 Score=24.93 Aligned_cols=94 Identities=12% Similarity=-0.020 Sum_probs=53.7
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|--........+. .+...++|+|..+.... + +.+..+...+...+...++.|...|.++++++..
T Consensus 57 ~~~vdgii~~~~~~~~~~~~-~l~~~~iPvV~~~~~~~---~----~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~ 128 (275)
T 3d8u_A 57 ESRPAGVVLFGSEHSQRTHQ-LLEASNTPVLEIAELSS---K----ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGA 128 (275)
T ss_dssp TSCCCCEEEESSCCCHHHHH-HHHHHTCCEEEESSSCS---S----SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred hcCCCEEEEeCCCCCHHHHH-HHHhCCCCEEEEeeccC---C----CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcC
Confidence 45666554322221222333 34457999998764321 1 1234556666666776777666669999999976
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+. .....+.++..+.+++.+
T Consensus 129 ~~~~------~~~~~R~~gf~~~l~~~g 150 (275)
T 3d8u_A 129 RGNH------STLQRQLHGWQSAMIENY 150 (275)
T ss_dssp SCSS------HHHHHHHHHHHHHHHHTT
T ss_pred CCCC------chHHHHHHHHHHHHHHcC
Confidence 4321 123456677777777653
No 61
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=69.86 E-value=17 Score=26.37 Aligned_cols=100 Identities=11% Similarity=0.009 Sum_probs=57.9
Q ss_pred ceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC-----CcE
Q psy8570 12 VVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN-----WTV 85 (159)
Q Consensus 12 ~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~-----W~~ 85 (159)
..+++++| .|............+. .++|+|.......... ....+....+.+.+...++..++.|..-+ -++
T Consensus 61 ~~~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~-~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~ 138 (304)
T 3o1i_D 61 QWGANAIILGTVDPHAYEHNLKSWV-GNTPVFATVNQLDLDE-EQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTN 138 (304)
T ss_dssp HHTCSEEEECCSSTTSSTTTHHHHT-TTSCEEECSSCCCCCT-TTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEE
T ss_pred HcCCCEEEEeCCChhHHHHHHHHHc-CCCCEEEecCCCcccc-cCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCE
Confidence 45677666 5544432223334445 8999998754332111 11123456677777777777777777777 779
Q ss_pred EEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 86 AGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 86 v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
++++...... .....+.++..+.+++.+
T Consensus 139 i~~i~~~~~~------~~~~~R~~gf~~~l~~~~ 166 (304)
T 3o1i_D 139 IALLLGPRTR------GGTKPVTTGFYEAIKNSD 166 (304)
T ss_dssp EEEECCCC-----------CHHHHHHHHTTTTBT
T ss_pred EEEEECCCCc------chHHHHHHHHHHHHhcCC
Confidence 9998654321 123346788888887753
No 62
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=68.63 E-value=31 Score=25.01 Aligned_cols=94 Identities=5% Similarity=-0.054 Sum_probs=55.7
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|-.........+.. +...++|+|..+..... . .+..+...+..-++..++.|..-|-++++++..
T Consensus 65 ~~~vdgiIi~~~~~~~~~~~~-l~~~~iPvV~~~~~~~~----~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~ 136 (290)
T 2rgy_A 65 GRDCDGVVVISHDLHDEDLDE-LHRMHPKMVFLNRAFDA----L---PDASFCPDHRRGGELAAATLIEHGHRKLAVISG 136 (290)
T ss_dssp HTTCSEEEECCSSSCHHHHHH-HHHHCSSEEEESSCCTT----S---GGGEECCCHHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred hcCccEEEEecCCCCHHHHHH-HhhcCCCEEEEccccCC----C---CCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeC
Confidence 456777774333322233333 34479999987653221 1 123455666666676666666669999999976
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+. .....+.++..+.+++.+
T Consensus 137 ~~~~------~~~~~R~~Gf~~al~~~g 158 (290)
T 2rgy_A 137 PFTA------SDNVERLDGFFDELARHG 158 (290)
T ss_dssp CTTC------HHHHHHHHHHHHHHHTTT
T ss_pred CCCC------ccHHHHHHHHHHHHHHcC
Confidence 5321 123456777778887764
No 63
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=64.35 E-value=42 Score=25.05 Aligned_cols=101 Identities=12% Similarity=0.016 Sum_probs=58.8
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCC------CcccCCe-eEEeeCChhhHHHHHHHHHHHcC---
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFE------LKFEYPT-LTRMMGSFSLVGQAVQSILKNFN--- 82 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~------~~~~~~~-~~r~~p~~~~~~~a~~~ll~~f~--- 82 (159)
+++++||-.........+...+...++|+|.......... ....|+. +..+.+.+...++..++.|...+
T Consensus 61 ~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~ 140 (350)
T 3h75_A 61 DKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPV 140 (350)
T ss_dssp SCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhh
Confidence 4677655332333444555667778999998776543221 1112222 45666777777777776665555
Q ss_pred ---C-cEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 83 ---W-TVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 83 ---W-~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
- .+++++....+ ......+.+++.+.+++.+
T Consensus 141 ~~g~~~~i~~i~g~~~------~~~~~~R~~Gf~~~l~~~~ 175 (350)
T 3h75_A 141 PAGHGIELLAFSGLKV------TPAAQLRERGLRRALAEHP 175 (350)
T ss_dssp CSSCCEEEEEEESCTT------SHHHHHHHHHHHHHHHHCT
T ss_pred cCCCCceEEEEeCCCC------CHHHHHHHHHHHHHHHHCC
Confidence 4 68888865432 1234456788888887764
No 64
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=64.21 E-value=28 Score=25.15 Aligned_cols=94 Identities=10% Similarity=0.009 Sum_probs=58.2
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|--..... ......+...++|+|..+..... +.+..+...+...++..++.|..-|-++++++..
T Consensus 62 ~~~vdgiIi~~~~~~-~~~~~~~~~~~iPvV~~~~~~~~-------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~ 133 (291)
T 3egc_A 62 ERRVDGLILAPSEGE-HDYLRTELPKTFPIVAVNRELRI-------PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVG 133 (291)
T ss_dssp HTTCSEEEECCCSSC-CHHHHHSSCTTSCEEEESSCCCC-------TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred HCCCCEEEEeCCCCC-hHHHHHhhccCCCEEEEecccCC-------CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 456777664333222 23344556679999987654321 1234566777777777777777779999999975
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+ ......+.+++.+.+++.+
T Consensus 134 ~~~------~~~~~~R~~gf~~~l~~~g 155 (291)
T 3egc_A 134 SAG------LMTSRERLKGFRAAMSAAG 155 (291)
T ss_dssp CTT------SHHHHHHHHHHHHHHHHTT
T ss_pred CCC------CcCHHHHHHHHHHHHHHcC
Confidence 532 1224456777777777653
No 65
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=63.36 E-value=41 Score=24.52 Aligned_cols=128 Identities=12% Similarity=0.044 Sum_probs=62.6
Q ss_pred ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCC---CC--cccCCeeEEeeCChhhHHHHHHHHHHHc--C
Q psy8570 10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANF---EL--KFEYPTLTRMMGSFSLVGQAVQSILKNF--N 82 (159)
Q Consensus 10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l---~~--~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~ 82 (159)
...+++++||..... ....+.. ...++|+|..+...+.. -. ...-..+..+. .... ....++++... |
T Consensus 58 l~~~~vDgII~~~~~-~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~-~~~~-~~~~~~~l~~~~pg 132 (295)
T 3lft_A 58 LVANGNDLVVGIATP-AAQGLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS-DHNP-AQQQVELIKALTPN 132 (295)
T ss_dssp HTTSSCSEEEEESHH-HHHHHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE-ECCC-HHHHHHHHHHHCTT
T ss_pred HHhcCCCEEEECCcH-HHHHHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE-CCcc-HHHHHHHHHHhCCC
Confidence 445678888865422 2222222 24689999765432211 00 00011222222 1112 33444555555 8
Q ss_pred CcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEe
Q psy8570 83 WTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKS 155 (159)
Q Consensus 83 W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~ 155 (159)
-+++++|+...+. ....+.+++.+.+++.+ +... ..... +.++..+.++++.+....|++
T Consensus 133 ~~~I~~i~~~~~~-------~~~~r~~g~~~al~~~g-i~~~-~~~~~----~~~~~~~~~~~l~~~~dai~~ 192 (295)
T 3lft_A 133 VKTIGALYSSSED-------NSKTQVEEFKAYAEKAG-LTVE-TFAVP----STNEIASTVTVMTSKVDAIWV 192 (295)
T ss_dssp CCEEEEEEETTCH-------HHHHHHHHHHHHHHHTT-CEEE-EEEES----SGGGHHHHHHHHTTTCSEEEE
T ss_pred CcEEEEEeCCCCc-------chHHHHHHHHHHHHHcC-CEEE-EEecC----CHHHHHHHHHHHHhcCCEEEE
Confidence 8999999876431 23456777878777764 2221 11111 223455666666544444443
No 66
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=62.46 E-value=45 Score=24.72 Aligned_cols=101 Identities=5% Similarity=-0.145 Sum_probs=54.2
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH-cC-CcEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN-FN-WTVAGFM 89 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~-f~-W~~v~~i 89 (159)
..+++++|-|............+...++|.|..........+....+.+..+...+...+...++.|.. .| -+++++|
T Consensus 102 ~~~vdgiIi~~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i 181 (342)
T 1jx6_A 102 KSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVL 181 (342)
T ss_dssp HTTCSEEEECCSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred hcCCCEEEEeCChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEE
Confidence 456887776654432223333344568998866222111100000122345666666666666665555 57 9999999
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..... .....+.++..+.+++.+
T Consensus 182 ~~~~~-------~~~~~R~~Gf~~~l~~~~ 204 (342)
T 1jx6_A 182 YFSEG-------YISDVRGDTFIHQVNRDN 204 (342)
T ss_dssp CCSTT-------HHHHHHHHHHHHHHHHHH
T ss_pred EcCCc-------chhhHHHHHHHHHHHhCC
Confidence 65432 123445667777776653
No 67
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=61.06 E-value=47 Score=24.49 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=53.4
Q ss_pred cceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEe-eCChhhHHHHHHHHHHH---cCCcE
Q psy8570 11 FVVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRM-MGSFSLVGQAVQSILKN---FNWTV 85 (159)
Q Consensus 11 ~~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~-~p~~~~~~~a~~~ll~~---f~W~~ 85 (159)
..+++++++ .|..+.....+...+...++|+|.+..... +... . ... ...+...++..++.|.. -+-++
T Consensus 57 i~~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~d~~~~---~~~~--~-~~v~~~D~~~~g~~~~~~L~~~~~~g~~~ 130 (316)
T 1tjy_A 57 VNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTK---PECR--S-YYINQGTPKQLGSMLVEMAAHQVDKEKAK 130 (316)
T ss_dssp HHTTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCC---GGGC--S-EEEESCCHHHHHHHHHHHHHHHHCSSSEE
T ss_pred HHcCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEecCCCC---CCCc--e-EEEecCCHHHHHHHHHHHHHHHcCCCCCE
Confidence 345677644 666555444455556667999998864321 1111 1 223 45555566666655544 36789
Q ss_pred EEEEEEeCCCcCCCCCCchHhHHHHHHHHHcC
Q psy8570 86 AGFMFNNYGQTTGKGNSNCWFTIASVYKIITS 117 (159)
Q Consensus 86 v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 117 (159)
++++..... ......+.++..+.+++
T Consensus 131 i~~i~g~~~------~~~~~~r~~g~~~~l~~ 156 (316)
T 1tjy_A 131 VAFFYSSPT------VTDQNQWVKEAKAKISQ 156 (316)
T ss_dssp EEEEESCSS------CHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCC------ChhHHHHHHHHHHHHHh
Confidence 999875432 12234456666666654
No 68
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=60.46 E-value=47 Score=24.29 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=58.2
Q ss_pred ceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEEE
Q psy8570 12 VVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAGF 88 (159)
Q Consensus 12 ~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~~ 88 (159)
..+++++| .|..+.........+...++|+|......+. . +.+..+.+.+...++..++.|... |.+++++
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~---~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~ 128 (313)
T 2h3h_A 55 AEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPD---S---GRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVI 128 (313)
T ss_dssp HTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTT---S---CCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEE
T ss_pred HcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCCCCC---c---ceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 45677776 4544433333334445579999987653221 1 122345667777777777666655 8999999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
+....+ ......+.+++.+.+++.+
T Consensus 129 i~~~~~------~~~~~~R~~gf~~~l~~~g 153 (313)
T 2h3h_A 129 GTGSLT------AMNSLQRIQGFKDAIKDSE 153 (313)
T ss_dssp EESCSS------CHHHHHHHHHHHHHHTTSS
T ss_pred EECCCC------CccHHHHHHHHHHHhcCCC
Confidence 976532 1224456788888888754
No 69
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=59.50 E-value=47 Score=24.03 Aligned_cols=95 Identities=5% Similarity=-0.068 Sum_probs=58.8
Q ss_pred cceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEE
Q psy8570 11 FVVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAG 87 (159)
Q Consensus 11 ~~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~ 87 (159)
...+++++| .|............+...++|+|..+..... . +.+..+.+.+...++..++.|... |-++++
T Consensus 58 ~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~---~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~ 131 (305)
T 3g1w_A 58 IAKNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPD---S---HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVA 131 (305)
T ss_dssp HHHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTT---S---CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHhCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCC---C---ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEE
Confidence 345677766 4443333334444555679999987754321 1 113456677777777777777666 889999
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
++..... .....+.+++.+.+++.
T Consensus 132 ~i~~~~~-------~~~~~R~~gf~~~l~~~ 155 (305)
T 3g1w_A 132 VITLPNQ-------LNHQERTTGFKETLEAE 155 (305)
T ss_dssp EEECTTC-------HHHHHHHHHHHHHHHHH
T ss_pred EEeCCCc-------ccHHHHHHHHHHHHHhh
Confidence 9975321 23445677777777754
No 70
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=58.82 E-value=7 Score=28.67 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=27.3
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
-.+++||..+.=+.....++..+++|+|+.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~g 40 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQISTG 40 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeech
Confidence 4689999999888888889999999999875
No 71
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=58.78 E-value=49 Score=23.97 Aligned_cols=92 Identities=11% Similarity=-0.023 Sum_probs=57.2
Q ss_pred eeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 13 VCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 13 ~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
.+++++| -|.... .. ....+...++|+|..+.... + +.+..+...+..-++..++.|..-|-++++++..
T Consensus 64 ~~vdGiIi~~~~~~-~~-~~~~l~~~~iPvV~~~~~~~---~----~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 134 (294)
T 3qk7_A 64 RRVDALIVAHTQPE-DF-RLQYLQKQNFPFLALGRSHL---P----KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVST 134 (294)
T ss_dssp TCCSEEEECSCCSS-CH-HHHHHHHTTCCEEEESCCCC---S----SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCCEEEEeCCCCC-hH-HHHHHHhCCCCEEEECCCCC---C----CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeC
Confidence 4677666 333322 22 33445566999998765321 1 1234466677777777777777779999999987
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+. .....+.++..+.+++.+
T Consensus 135 ~~~~------~~~~~R~~Gf~~al~~~g 156 (294)
T 3qk7_A 135 DARI------SYVDQRLQGYVQTMSEAG 156 (294)
T ss_dssp SSCC------HHHHHHHHHHHHHHHTTT
T ss_pred Cccc------chHHHHHHHHHHHHHHCC
Confidence 6431 224456788888887764
No 72
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=57.95 E-value=50 Score=23.82 Aligned_cols=95 Identities=11% Similarity=-0.001 Sum_probs=56.3
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|..............+...++|+|..+.... + +.+..+...+..-+...++-|..-|.++++++..
T Consensus 74 ~~~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~----~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~ 146 (293)
T 2iks_A 74 QRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALD---R----EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGA 146 (293)
T ss_dssp HTTCSEEEECCSSCTTCHHHHTTTTSSSCEEEEESCCC---T----TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEE
T ss_pred HcCCCEEEEeCCCCCcHHHHHHHHhCCCCEEEECCccC---c----CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 45677776433332222222334557899998765322 1 1123455666666666666666669999999987
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+. .....+.++..+.+++.+
T Consensus 147 ~~~~------~~~~~R~~Gf~~~l~~~g 168 (293)
T 2iks_A 147 LPEL------SVSFLREQGFRTAWKDDP 168 (293)
T ss_dssp CTTS------HHHHHHHHHHHHHHTTCC
T ss_pred Cccc------ccHHHHHHHHHHHHHHcC
Confidence 5321 123456778888888764
No 73
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=56.67 E-value=53 Score=23.67 Aligned_cols=92 Identities=9% Similarity=-0.114 Sum_probs=54.8
Q ss_pred eeeEEEEC-CCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 13 VCVDAFLG-PVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 13 ~~v~aiiG-p~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
.+++++|- |... ... ....+...++|+|..+..... +.+..+...+...++..++.|..-|-++++++..
T Consensus 65 ~~vdgiIi~~~~~-~~~-~~~~l~~~~iPvV~i~~~~~~-------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~ 135 (288)
T 3gv0_A 65 GSADGVIISKIEP-NDP-RVRFMTERNMPFVTHGRSDMG-------IEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVP 135 (288)
T ss_dssp TCCSEEEEESCCT-TCH-HHHHHHHTTCCEEEESCCCSS-------CCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCccEEEEecCCC-CcH-HHHHHhhCCCCEEEECCcCCC-------CCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcC
Confidence 55665552 3222 222 234445579999987653221 1223456677677777777777779999999976
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+. .....+.++..+.+++.+
T Consensus 136 ~~~~------~~~~~R~~gf~~~l~~~g 157 (288)
T 3gv0_A 136 PSRF------SFHDHARKGFNRGIRDFG 157 (288)
T ss_dssp CTTS------HHHHHHHHHHHHHHHHTT
T ss_pred Cccc------chHHHHHHHHHHHHHHcC
Confidence 5321 223456777777777654
No 74
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=56.44 E-value=9.3 Score=25.92 Aligned_cols=34 Identities=26% Similarity=0.138 Sum_probs=27.2
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+..++++.||..+.=+.....++..++.|+++.+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 35 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAG 35 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence 3467899999999888777778888999998643
No 75
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=55.71 E-value=53 Score=23.53 Aligned_cols=94 Identities=11% Similarity=-0.032 Sum_probs=57.3
Q ss_pred ceeeEEEEC-CCCch---hHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEE
Q psy8570 12 VVCVDAFLG-PVCDY---VIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAG 87 (159)
Q Consensus 12 ~~~v~aiiG-p~~s~---~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~ 87 (159)
.++++++|- |..+. ........+...++|+|..+...... . +..+...+..-++..++.|..-|-++++
T Consensus 69 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~----~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~ 141 (298)
T 3tb6_A 69 SQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYAEL----A---APSFTLDDVKGGMMAAEHLLSLGHTHMM 141 (298)
T ss_dssp HTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCCTTC----S---SCEEEECHHHHHHHHHHHHHHTTCCSEE
T ss_pred HCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCcCCC----C---CCEEEeCcHHHHHHHHHHHHHCCCCcEE
Confidence 456776663 33221 23333444556799999876543211 1 2345667777777777777777999999
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
++..... .....+.++..+.+++.+
T Consensus 142 ~i~~~~~-------~~~~~R~~gf~~~l~~~g 166 (298)
T 3tb6_A 142 GIFKADD-------TQGVKRMNGFIQAHRERE 166 (298)
T ss_dssp EEEESSS-------HHHHHHHHHHHHHHHHTT
T ss_pred EEcCCCC-------ccHHHHHHHHHHHHHHcC
Confidence 9986542 123456777777777653
No 76
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=55.60 E-value=39 Score=24.12 Aligned_cols=90 Identities=11% Similarity=0.002 Sum_probs=52.3
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
...+++++| -........+. . .++|+|..+...+ .+ ... ..+...+...++..++.|..-|-++++++.
T Consensus 57 ~~~~vdgiI-~~~~~~~~~~~---~-~~iPvV~~~~~~~--~~-~~~---~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~ 125 (280)
T 3gyb_A 57 LSMRPDGII-IAQDIPDFTVP---D-SLPPFVIAGTRIT--QA-STH---DSVANDDFRGAEIATKHLIDLGHTHIAHLR 125 (280)
T ss_dssp HTTCCSEEE-EESCC------------CCCEEEESCCCS--SS-CST---TEEEECHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred HhCCCCEEE-ecCCCChhhHh---h-cCCCEEEECCCCC--CC-CCC---CEEEechHHHHHHHHHHHHHCCCCeEEEEe
Confidence 345777777 33222222222 2 8999998775431 11 122 345666777777777777777999999997
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.... . ...+.+++.+.+++.+
T Consensus 126 ~~~~-------~-~~~R~~gf~~~l~~~~ 146 (280)
T 3gyb_A 126 VGSG-------A-GLRRFESFEATMRAHG 146 (280)
T ss_dssp CSSH-------H-HHHHHHHHHHHHHHTT
T ss_pred CCCc-------h-HHHHHHHHHHHHHHcC
Confidence 6432 1 4456777777777764
No 77
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=55.47 E-value=8.1 Score=27.86 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=26.8
Q ss_pred EEEeeeccce-eeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 4 LCFYRTGFVV-CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 4 ~~~~~~~~~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
-+||.....+ ...+++||..+.=+.....++..++++.++.|
T Consensus 17 ~~~~~~~~~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G 59 (246)
T 2bbw_A 17 NLYFQSMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSG 59 (246)
T ss_dssp ---------CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHH
T ss_pred HHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 3566666554 47899999999888888888888888776543
No 78
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=55.19 E-value=12 Score=29.02 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=29.0
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+.++++|.||+.+.=+.....++..++.++|+..
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 5678899999999988888899999998888654
No 79
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=53.06 E-value=10 Score=26.62 Aligned_cols=33 Identities=15% Similarity=0.020 Sum_probs=27.3
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
.+++++||+.+.=+.....+++.+++|+++.|.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~ 38 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA 38 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcc
Confidence 478999999998887777788889999987553
No 80
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=52.61 E-value=11 Score=27.23 Aligned_cols=33 Identities=15% Similarity=-0.053 Sum_probs=27.6
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
...+++.||..+.=+.....++..+++|+++.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 346889999999888778888888999999765
No 81
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=52.42 E-value=15 Score=25.84 Aligned_cols=38 Identities=11% Similarity=0.016 Sum_probs=27.2
Q ss_pred eeeccceeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 7 YRTGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 7 ~~~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
+|-.+.+.++++.|+..|.=+.....++..+++|++..
T Consensus 6 ~~~~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 6 IHHHHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp ----CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 34556778899999999987766666666669999874
No 82
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=51.77 E-value=63 Score=23.12 Aligned_cols=96 Identities=10% Similarity=0.035 Sum_probs=52.8
Q ss_pred ceeeEEEECCCCc-hhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc------CCc
Q psy8570 12 VVCVDAFLGPVCD-YVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF------NWT 84 (159)
Q Consensus 12 ~~~v~aiiGp~~s-~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f------~W~ 84 (159)
..+++++|..... .........+...++|+|..+..... ....+ ..+...+...++..++.|... |.+
T Consensus 56 ~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~~~~--~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r 130 (290)
T 2fn9_A 56 AAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINA---RGLAV--AQIYSDNYYGGVLAGEYFVKFLKEKYPDAK 130 (290)
T ss_dssp HTTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSCCSC---SSSSS--EEEEECHHHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCCCC---CCceE--EEEeCCHHHHHHHHHHHHHHHhcccCCccc
Confidence 4567777754333 22222333444579999987653221 11112 125566666666666655555 788
Q ss_pred E--EEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 85 V--AGFMFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 85 ~--v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
+ ++++....+ ......+.+++.+.+++.
T Consensus 131 ~i~i~~l~g~~~------~~~~~~R~~gf~~~l~~~ 160 (290)
T 2fn9_A 131 EIPYAELLGILS------AQPTWDRSNGFHSVVDQY 160 (290)
T ss_dssp CEEEEEEECCTT------CHHHHHHHHHHHHHHTTS
T ss_pred ceeEEEEEcCCC------CchHHHHHHHHHHHHHhC
Confidence 8 555654322 122345677888888876
No 83
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=50.15 E-value=75 Score=23.53 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=52.4
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|-.........+..+....++|+|..+..... ..+ ...+...+..-+...++-|..-|.+++++|..
T Consensus 112 ~~~vdgiI~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~----~~~--~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g 185 (340)
T 1qpz_A 112 QKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAK----ADF--TDAVIDNAFEGGYMAGRYLIERGHREIGVIPG 185 (340)
T ss_dssp HTTCSEEEECCSCCCHHHHHHHHTTTTSCEEEEEESSCC----CSS--SEEEECCHHHHHHHHHHHHHHHTCCCEEEECC
T ss_pred cCCCCEEEEeCCCCChHHHHHHHhhCCCCEEEEecccCC----CCC--CCEEEECHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 456777764222222222333333358999987653221 111 13455666666666666555559999999965
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+. .....+.++..+.+++.+
T Consensus 186 ~~~~------~~~~~R~~Gf~~al~~~g 207 (340)
T 1qpz_A 186 PLER------NTGAGRLAGFMKAMEEAM 207 (340)
T ss_dssp CTTS------HHHHHHHHHHHHHHHHTT
T ss_pred CCcc------ccHHHHHHHHHHHHHHCC
Confidence 4321 123445677777776653
No 84
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=48.85 E-value=70 Score=22.78 Aligned_cols=92 Identities=7% Similarity=-0.050 Sum_probs=53.2
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEeC
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNY 93 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~~ 93 (159)
+++++|--........+.. +...++|+|..+..... +.+..+...+...+...++.|..-|-++++++....
T Consensus 57 ~vdgiI~~~~~~~~~~~~~-l~~~~iPvV~~~~~~~~-------~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~ 128 (277)
T 3cs3_A 57 MVDGAIILDWTFPTKEIEK-FAERGHSIVVLDRTTEH-------RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPE 128 (277)
T ss_dssp TCSEEEEECTTSCHHHHHH-HHHTTCEEEESSSCCCS-------TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCT
T ss_pred cccEEEEecCCCCHHHHHH-HHhcCCCEEEEecCCCC-------CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCc
Confidence 5666553222222233333 34478999987643221 123455666666666666666666999999997653
Q ss_pred CCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 94 GQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.. .....+.++..+.+++.+
T Consensus 129 ~~------~~~~~R~~gf~~~l~~~g 148 (277)
T 3cs3_A 129 KG------YDSQERLAVSTRELTRFG 148 (277)
T ss_dssp TS------HHHHHHHHHHHHHHHHTT
T ss_pred cC------ccHHHHHHHHHHHHHHcC
Confidence 21 123456677777777654
No 85
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=45.78 E-value=81 Score=22.67 Aligned_cols=102 Identities=11% Similarity=-0.027 Sum_probs=58.9
Q ss_pred cceeeEEEECCCCch-hHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH---------
Q psy8570 11 FVVCVDAFLGPVCDY-VIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN--------- 80 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~-~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~--------- 80 (159)
...+++++|-..... ........+...++|+|..+...... +...++.+..+...+...++..++.|..
T Consensus 56 ~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~ 134 (309)
T 2fvy_A 56 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK-ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWD 134 (309)
T ss_dssp HHTTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSCCCHH-HHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHcCCCEEEEeCCCcchhHHHHHHHHHCCCcEEEecCCCCcc-cccccCccEEEecCHHHHHHHHHHHHHHHHhhccccc
Confidence 345677776543332 23334444556799999876532110 0001234456777777777766666655
Q ss_pred ---cCCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 81 ---FNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 81 ---f~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
-+-++++++....+ ......+.+++.+.+++.+
T Consensus 135 ~~g~g~~~i~~i~~~~~------~~~~~~R~~gf~~~l~~~g 170 (309)
T 2fvy_A 135 LNKDGQIQFVLLKGEPG------HPDAEARTTYVIKELNDKG 170 (309)
T ss_dssp TTCSSSEEEEEEECSTT------CHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCceEEEEEEcCCC------CccHHHHHHHHHHHHHhcC
Confidence 67778998875432 1223456777778777754
No 86
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=45.37 E-value=88 Score=22.96 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=55.7
Q ss_pred cceeeEEEECCCCchhH-HHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEE
Q psy8570 11 FVVCVDAFLGPVCDYVI-APVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAG 87 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~-~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~ 87 (159)
...+++++|....+... ......+...++|+|..+..... . +.+..+.+.+...+...++.|... |.++++
T Consensus 59 ~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~ 132 (325)
T 2x7x_A 59 MDEGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILS---D---KYTAYIGADNYEIGRSVGNYIASSLKGKGNIV 132 (325)
T ss_dssp HHTTCSEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCCSS---S---CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred HHcCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEeCCCCCC---c---ceeEEEecCHHHHHHHHHHHHHHHcCCCceEE
Confidence 34678887765444322 23333444578999987643221 1 112345566666666666555543 889999
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
++....+ ......+.+++.+.+++.
T Consensus 133 ~i~~~~~------~~~~~~R~~Gf~~al~~~ 157 (325)
T 2x7x_A 133 ELTGLSG------STPAMERHQGFMAAISKF 157 (325)
T ss_dssp EEESCTT------SHHHHHHHHHHHHHHHTC
T ss_pred EEECCCC------CccHHHHHHHHHHHHHhC
Confidence 9975432 112345677888888775
No 87
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=44.96 E-value=81 Score=22.41 Aligned_cols=93 Identities=4% Similarity=-0.036 Sum_probs=54.8
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|--.... ......+...++|+|..+..... . . +..+...+..-++..++.|..-|-++++++..
T Consensus 61 ~~~vdgiIi~~~~~--~~~~~~l~~~~iPvV~i~~~~~~---~-~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~ 131 (276)
T 3jy6_A 61 SRGFDGLILQSFSN--PQTVQEILHQQMPVVSVDREMDA---C-P---WPQVVTDNFEAAKAATTAFRQQGYQHVVVLTS 131 (276)
T ss_dssp TTTCSEEEEESSCC--HHHHHHHHTTSSCEEEESCCCTT---C-S---SCEEECCHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred hCCCCEEEEecCCc--HHHHHHHHHCCCCEEEEecccCC---C-C---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEec
Confidence 45676665333332 33444556679999987654221 1 1 23456677777777787777789999999987
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
.... ......+.++..+.+++.
T Consensus 132 ~~~~-----~~~~~~R~~gf~~~l~~~ 153 (276)
T 3jy6_A 132 ELEL-----SRTRQERYRGILAAAQDV 153 (276)
T ss_dssp CSTT-----CHHHHHHHHHHHTTCSEE
T ss_pred CCCC-----CchHHHHHHHHHHHHHhC
Confidence 5431 111234555555555443
No 88
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=44.79 E-value=91 Score=22.94 Aligned_cols=126 Identities=14% Similarity=0.113 Sum_probs=62.5
Q ss_pred ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCC---CCCcccC--CeeEEeeCChhhHHHHHHHHHHH-c-C
Q psy8570 10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVAN---FELKFEY--PTLTRMMGSFSLVGQAVQSILKN-F-N 82 (159)
Q Consensus 10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~---l~~~~~~--~~~~r~~p~~~~~~~a~~~ll~~-f-~ 82 (159)
+...++++|++-+.+ ++..+ ....-++|+|-.+-.++. +-+.... +.++-+.- .....+ -+++++. + +
T Consensus 65 l~~~~~DlIiai~t~-aa~a~--~~~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~~-~~~~~~-~l~l~~~l~P~ 139 (302)
T 3lkv_A 65 FVGENPDVLVGIATP-TAQAL--VSATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSD-LSPVEQ-HVELIKEILPN 139 (302)
T ss_dssp HHTTCCSEEEEESHH-HHHHH--HHHCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEEC-CCCHHH-HHHHHHHHSTT
T ss_pred HHhcCCcEEEEcCCH-HHHHH--HhhcCCCCeEEEecCCcchhhhcccccCCCCcEEEEEC-CcCHHH-HHHHHHHhCCC
Confidence 345677788764322 22222 334568999865544332 2111111 22333321 111233 3455544 4 6
Q ss_pred CcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEE
Q psy8570 83 WTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARII 153 (159)
Q Consensus 83 W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIi 153 (159)
-++++++|...+. ......+.+.+...+.+ +.. +.... .+..+..+.++.+..+.-++
T Consensus 140 ~k~vgvi~~~~~~-------~s~~~~~~~~~~~~~~g-~~~---v~~~~--~~~~~~~~~~~~l~~~~d~i 197 (302)
T 3lkv_A 140 VKSIGVVYNPGEA-------NAVSLMELLKLSAAKHG-IKL---VEATA--LKSADVQSATQAIAEKSDVI 197 (302)
T ss_dssp CCEEEEEECTTCH-------HHHHHHHHHHHHHHHTT-CEE---EEEEC--SSGGGHHHHHHHHHTTCSEE
T ss_pred CCEEEEEeCCCcc-------cHHHHHHHHHHHHHHcC-CEE---EEEec--CChHHHHHHHHhccCCeeEE
Confidence 7899999976532 24455666777776664 222 12211 23455666666666554433
No 89
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=44.20 E-value=20 Score=24.67 Aligned_cols=33 Identities=21% Similarity=0.102 Sum_probs=27.2
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
..++++.||..+.=+.....++..++.|+++.+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 457899999999888777788888999999754
No 90
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=44.03 E-value=18 Score=24.83 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=25.7
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+++|.||..+.=+.....++..+++|++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 7899999999887777777888999998754
No 91
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=43.37 E-value=21 Score=24.05 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=27.1
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
...+++.||..+.=+.....++..++.|+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d 36 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTG 36 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 447889999999888777788888899998754
No 92
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=43.24 E-value=89 Score=22.41 Aligned_cols=94 Identities=14% Similarity=-0.037 Sum_probs=54.3
Q ss_pred ceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH-cCCc-EEEE
Q psy8570 12 VVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN-FNWT-VAGF 88 (159)
Q Consensus 12 ~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~-f~W~-~v~~ 88 (159)
..+++++| .|..+.........+...++|+|..+... ..+ +.+..+...+...++..++.|.. .|-+ ++++
T Consensus 59 ~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~~--~~~----~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~ 132 (303)
T 3d02_A 59 ARKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESPG--QPS----ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVI 132 (303)
T ss_dssp HTTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEESCTT--CTT----CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCC--CCC----CceEEEecCHHHHHHHHHHHHHHHhCcCceEEE
Confidence 45677755 56544333333344556799999876531 111 22344556666667766666655 7887 8888
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcC
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITS 117 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 117 (159)
+....+ ......+.++..+.+++
T Consensus 133 i~g~~~------~~~~~~R~~gf~~~l~~ 155 (303)
T 3d02_A 133 YVGSLT------VPQHNLWADLLVKYQKE 155 (303)
T ss_dssp ECSCSS------CHHHHHHHHHHHHHHHH
T ss_pred EecCCC------CccHHHHHHHHHHHHHh
Confidence 864322 11233456677776664
No 93
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=42.86 E-value=17 Score=24.74 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=27.5
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+..++++.||..+.=+.....++..++.|+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 3457899999999888777788888999998643
No 94
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=42.60 E-value=20 Score=25.57 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=27.3
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
.+..++++.||..+.-+.....++..+++|.+..+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 34457899999988877766777788899998754
No 95
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=41.59 E-value=24 Score=27.44 Aligned_cols=32 Identities=6% Similarity=0.024 Sum_probs=27.8
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
.++++|+||+.+.=+...-.+|..++.++|+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~ 71 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINS 71 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcc
Confidence 45899999999998888889999999988864
No 96
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=41.43 E-value=21 Score=24.89 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=24.7
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
+++.||..+.=+.....++..++.|+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 57889999988877777889999999976
No 97
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=41.27 E-value=28 Score=23.77 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=26.6
Q ss_pred eeeEEEECCCCc--hhHHHHHHHHhccCCcEEcccc
Q psy8570 13 VCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 13 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~~~ 46 (159)
++++.+.|..+. .....+..++..+++|+++...
T Consensus 35 krPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~ 70 (170)
T 3cf4_G 35 KRPLLMVGTLALDPELLDRVVKISKAANIPIAATGS 70 (170)
T ss_dssp SSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTT
T ss_pred CCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcc
Confidence 578889998764 4556788999999999987543
No 98
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=40.33 E-value=21 Score=24.85 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=24.6
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
+++.||..+.=+.....++..++.|+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 57889999988877777889999999965
No 99
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=39.76 E-value=21 Score=24.26 Aligned_cols=33 Identities=9% Similarity=0.036 Sum_probs=27.1
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
...++++.||..+.=+.....++..++.++++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345789999999988877778888889999864
No 100
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=39.29 E-value=98 Score=21.73 Aligned_cols=95 Identities=14% Similarity=0.044 Sum_probs=59.4
Q ss_pred cee-eEEEECCCC-chhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc----CCcE
Q psy8570 12 VVC-VDAFLGPVC-DYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF----NWTV 85 (159)
Q Consensus 12 ~~~-v~aiiGp~~-s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f----~W~~ 85 (159)
..+ ++++|-... +.........+...++|+|..+..... . .....+.+.+...++..++.|... |-++
T Consensus 56 ~~~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~---~---~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~ 129 (276)
T 3ksm_A 56 SQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAG---D---AHQGLVATDNYAAGQLAARALLATLDLSKERN 129 (276)
T ss_dssp HHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS---S---CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred HhCCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCCCC---C---CcceEEccCHHHHHHHHHHHHHHhcCcCCCce
Confidence 445 777764332 333444455566679999988654321 1 112445677777777777777666 8899
Q ss_pred EEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 86 AGFMFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 86 v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
++++....+ ......+.++..+.+++.
T Consensus 130 i~~i~~~~~------~~~~~~R~~gf~~~l~~~ 156 (276)
T 3ksm_A 130 IALLRLRAG------NASTDQREQGFLDVLRKH 156 (276)
T ss_dssp EEECBCCTT------CHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCC------chhHHHHHHHHHHHHHhC
Confidence 999975432 123455778888888776
No 101
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=38.60 E-value=27 Score=23.52 Aligned_cols=32 Identities=13% Similarity=0.056 Sum_probs=25.6
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
.++++.||+.+.=+.....++..+++|+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 46789999998877666677888899998654
No 102
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=38.14 E-value=31 Score=22.83 Aligned_cols=35 Identities=9% Similarity=-0.043 Sum_probs=25.7
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
..-..+++.|+..+.=+.....++..+++|++...
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 34567899999998877666667788899998643
No 103
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=37.10 E-value=1.1e+02 Score=21.78 Aligned_cols=101 Identities=10% Similarity=0.000 Sum_probs=60.9
Q ss_pred cceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCC--cEEE
Q psy8570 11 FVVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNW--TVAG 87 (159)
Q Consensus 11 ~~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W--~~v~ 87 (159)
...+++++| -|............+...++|+|..+...+.. +.+..+.+.+...++..++.|...+. ++++
T Consensus 66 ~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~------~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~ 139 (304)
T 3gbv_A 66 IEEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQIKDA------PPLAFFGQNSHQSGYFAARMLMLLAVNDREIV 139 (304)
T ss_dssp HTTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCCTTS------CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEE
T ss_pred HhcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCCCCCC------CceEEEecChHHHHHHHHHHHHHHhCCCCeEE
Confidence 356777766 44433333444455566699999877533211 12345667777778888887777788 9999
Q ss_pred EEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
++....+- ..+......+.++..+.+++.+
T Consensus 140 ~i~~~~~g--~~~~~~~~~R~~gf~~~l~~~g 169 (304)
T 3gbv_A 140 IFRKIHEG--VIGSNQQESREIGFRQYMQEHH 169 (304)
T ss_dssp EEEEEBTT--BCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEecccC--CccchhHHHHHHHHHHHHHhhC
Confidence 99854210 0011224456777777777653
No 104
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=37.10 E-value=28 Score=22.76 Aligned_cols=31 Identities=13% Similarity=-0.116 Sum_probs=24.7
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
.++++.||+.+.=+.....+ ..++.|+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~ 32 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMS 32 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHh
Confidence 46789999999877666666 88899998753
No 105
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=36.79 E-value=32 Score=24.97 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=26.2
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
+++++.||+.+.=+.....++...+.++++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~ 32 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVAL 32 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEec
Confidence 4688999999988877788899999998864
No 106
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=36.57 E-value=1.1e+02 Score=21.57 Aligned_cols=91 Identities=7% Similarity=-0.012 Sum_probs=51.0
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|-...+ ...+...+...++|+|..+...... . .+...+...++..++.|..-|-++++++..
T Consensus 62 ~~~~dgiIi~~~~--~~~~~~~l~~~~iPvV~~~~~~~~~------~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~ 130 (277)
T 3e61_A 62 SHNCTGMISTAFN--ENIIENTLTDHHIPFVFIDRINNEH------N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHE 130 (277)
T ss_dssp HTTCSEEEECGGG--HHHHHHHHHHC-CCEEEGGGCC------------------HHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred hCCCCEEEEecCC--hHHHHHHHHcCCCCEEEEeccCCCC------C---eEEechHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 4567766643322 2223304555699999887643211 1 455666667777777777779999999976
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+ ......+.+++.+.+++.+
T Consensus 131 ~~~------~~~~~~R~~gf~~~l~~~~ 152 (277)
T 3e61_A 131 NLL------IDAFHQRVQGIKYILDQQR 152 (277)
T ss_dssp CTT------SHHHHHHHHHHHHHHHC--
T ss_pred CCC------CccHHHHHHHHHHHHHHcC
Confidence 532 1234556788888888764
No 107
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=36.18 E-value=34 Score=23.44 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=26.0
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
..+++.||..+.=+.....++..++.|+++.
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3688999999988877778888889999875
No 108
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=36.04 E-value=33 Score=23.64 Aligned_cols=36 Identities=6% Similarity=-0.065 Sum_probs=27.7
Q ss_pred cceeeEEEECCCCchhHHHHHHHHhcc-CCcEEcccc
Q psy8570 11 FVVCVDAFLGPVCDYVIAPVARYSGVW-GIPVLTAGG 46 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~~~~va~~~~~~-~iP~is~~~ 46 (159)
-...++++.||+.+.=+.....+++.+ +++++....
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~ 55 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDD 55 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCc
Confidence 344578999999998877777788877 898886543
No 109
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=35.42 E-value=30 Score=23.17 Aligned_cols=31 Identities=23% Similarity=0.024 Sum_probs=25.9
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
.++++.||..+.=+.....++..++.|+++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5789999999988877777888889999865
No 110
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=35.03 E-value=31 Score=23.98 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=26.1
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
..++++.||..+.-+.....++..+++|++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 347899999988877666677888999998754
No 111
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=34.99 E-value=33 Score=24.02 Aligned_cols=32 Identities=9% Similarity=-0.011 Sum_probs=26.5
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLT 43 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is 43 (159)
++.+++|.||..+.-......+|..+++|.+.
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 45689999999988877667799999999996
No 112
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=34.93 E-value=89 Score=23.32 Aligned_cols=95 Identities=11% Similarity=0.009 Sum_probs=51.6
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|-.........+. .+...++|+|..+..... ...+ ..+...+..-+...++.|..-|.+++++|..
T Consensus 120 ~~~vdgiI~~~~~~~~~~~~-~l~~~~iPvV~i~~~~~~---~~~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 192 (348)
T 3bil_A 120 SHGVDGIICVPNEECANQLE-DLQKQGMPVVLVDRELPG---DSTI---PTATSNPQPGIAAAVELLAHNNALPIGYLSG 192 (348)
T ss_dssp HTTCSCEEECCCGGGHHHHH-HHHHC-CCEEEESSCCSC---C-CC---CEEEEECHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred hCCCCEEEEeCCCCChHHHH-HHHhCCCCEEEEcccCCC---CCCC---CEEEeChHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 45677766443333323333 334468999987653221 0112 2344455555566666666669999999975
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+. .....+.++..+.+++.+
T Consensus 193 ~~~~------~~~~~R~~Gf~~al~~~g 214 (348)
T 3bil_A 193 PMDT------STGRERLEDFKAACANSK 214 (348)
T ss_dssp CTTS------HHHHHHHHHHHHHHHHTT
T ss_pred CCCC------ccHHHHHHHHHHHHHHcC
Confidence 4321 123445677777776653
No 113
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=34.47 E-value=37 Score=22.26 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=25.7
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++++.||..+.=+.....++..++.|.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 6789999999888777888888899988654
No 114
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=34.29 E-value=41 Score=23.34 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=24.6
Q ss_pred eeeEEEECCCCc--hhHHHHHHHHhccCCcEEcccc
Q psy8570 13 VCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 13 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~~~ 46 (159)
++++.++|. +. .....+..++.. ++|+++...
T Consensus 36 kRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~ 69 (174)
T 1ytl_A 36 KRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGS 69 (174)
T ss_dssp SSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETT
T ss_pred CCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEccc
Confidence 567888888 65 555668899999 999997643
No 115
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=34.15 E-value=37 Score=26.12 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=28.0
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
.++++|.||+.+.=+.....++..++.++|+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~ 41 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISV 41 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEec
Confidence 45789999999998888889999999998875
No 116
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=33.76 E-value=39 Score=23.20 Aligned_cols=34 Identities=6% Similarity=0.007 Sum_probs=27.9
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+.+.++++||+.+.=+.....++..++.|.+...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3458899999999888888888888999988643
No 117
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=33.46 E-value=38 Score=23.59 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=26.1
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
..+++.||..+.=+.....++..++.|+++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 3578899999988877888889899999875
No 118
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=33.31 E-value=1.4e+02 Score=21.59 Aligned_cols=94 Identities=10% Similarity=0.001 Sum_probs=56.3
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|--...... .....+...++|+|..+.... . +.+..+...+..-++..++.|..-|-++++++..
T Consensus 81 ~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~i~~~~~----~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~ 152 (305)
T 3huu_A 81 SKSVDGFILLYSLKDD-PIEHLLNEFKVPYLIVGKSLN----Y---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQE 152 (305)
T ss_dssp TTCCSEEEESSCBTTC-HHHHHHHHTTCCEEEESCCCS----S---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred hCCCCEEEEeCCcCCc-HHHHHHHHcCCCEEEECCCCc----c---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcC
Confidence 4567766532222222 233445566999998765321 1 1223456666667777777777779999999987
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+. .....+.++..+.+++.+
T Consensus 153 ~~~~------~~~~~R~~Gf~~~l~~~g 174 (305)
T 3huu_A 153 SGHY------AVTEDRSVGFKQYCDDVK 174 (305)
T ss_dssp SSCB------HHHHHHHHHHHHHHHHTT
T ss_pred Cccc------chhHHHHHHHHHHHHHcC
Confidence 5432 123446777777777654
No 119
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=33.15 E-value=1.3e+02 Score=22.25 Aligned_cols=95 Identities=11% Similarity=0.028 Sum_probs=53.2
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|=....... .....+...++|+|..+.... .+....+...+..-+...++-|..-|-++++++..
T Consensus 122 ~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~i~~~~~-------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 193 (344)
T 3kjx_A 122 SWRPSGVIIAGLEHSE-AARAMLDAAGIPVVEIMDSDG-------KPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGT 193 (344)
T ss_dssp TTCCSEEEEECSCCCH-HHHHHHHHCSSCEEEEEECSS-------CCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEES
T ss_pred hCCCCEEEEECCCCCH-HHHHHHHhCCCCEEEEeCCCC-------CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEec
Confidence 4456655522222122 333445567999998753211 11123455666666666666665569999999975
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.... ......+.++..+.+++.+
T Consensus 194 ~~~~-----~~~~~~R~~Gf~~al~~~g 216 (344)
T 3kjx_A 194 KMPL-----DYRARKRFEGFTEVLGKNG 216 (344)
T ss_dssp STTT-----CHHHHHHHHHHHHHHHHTT
T ss_pred Cccc-----CccHHHHHHHHHHHHHHcC
Confidence 4310 1124456777778777764
No 120
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=32.84 E-value=31 Score=24.25 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=26.9
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
...+++.||..+.=+.....++..++.++++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 35688999999988888888888999999965
No 121
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=32.35 E-value=35 Score=24.84 Aligned_cols=34 Identities=21% Similarity=0.130 Sum_probs=27.7
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
+.++++.||+.+.=+.....++..++++.++.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~ 42 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGA 42 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCc
Confidence 3478999999998887777788889999987654
No 122
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=32.26 E-value=26 Score=23.48 Aligned_cols=33 Identities=9% Similarity=-0.148 Sum_probs=26.2
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccC-----CcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWG-----IPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~-----iP~is~~ 45 (159)
...+++.||+.+.=+.....++..++ .|+++.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 45789999999988877777887777 8888744
No 123
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=32.25 E-value=36 Score=26.37 Aligned_cols=31 Identities=6% Similarity=0.103 Sum_probs=26.6
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
++++|.||+.+.=+.....++..++.++|+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~ 38 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISG 38 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEEC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecc
Confidence 5889999999998887888999999888864
No 124
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=31.83 E-value=1.4e+02 Score=21.48 Aligned_cols=95 Identities=17% Similarity=0.054 Sum_probs=56.3
Q ss_pred ceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHH-HcCCcEEEEE
Q psy8570 12 VVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILK-NFNWTVAGFM 89 (159)
Q Consensus 12 ~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~-~f~W~~v~~i 89 (159)
..+++++| .|............+...++|+|..+..... ..+. ..+...+...++..++.|. .-|-++++++
T Consensus 56 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~----~~~~--~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i 129 (313)
T 3m9w_A 56 NRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMIND----ADID--FYISFDNEKVGELQAKALVDIVPQGNYFLM 129 (313)
T ss_dssp HTTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTT----SCCS--EEEEECHHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred HcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCC----CCce--EEEecCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 45666655 3433333334455566779999987754322 1111 3455667777777777776 8888999999
Q ss_pred EEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 90 FNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
....+. .....+.++..+.+++.
T Consensus 130 ~g~~~~------~~~~~R~~Gf~~~l~~~ 152 (313)
T 3m9w_A 130 GGSPVD------NNAKLFRAGQMKVLKPY 152 (313)
T ss_dssp ESCTTC------HHHHHHHHHHHHHHHHH
T ss_pred ECCCCC------ccHHHHHHHHHHHHHhh
Confidence 754321 22334566666666553
No 125
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=31.24 E-value=38 Score=23.64 Aligned_cols=30 Identities=10% Similarity=0.032 Sum_probs=25.7
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
.+++.||..+.=+.....++..+++|+++.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 568889999988877888889899999975
No 126
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=30.90 E-value=41 Score=22.55 Aligned_cols=32 Identities=9% Similarity=0.017 Sum_probs=26.3
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
..++++.||+.+.=+.....++..++.|+++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 45788999999988877888888889888863
No 127
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=30.83 E-value=47 Score=22.22 Aligned_cols=33 Identities=3% Similarity=-0.108 Sum_probs=26.6
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
.+.++++||+.+.=+.....++..++.|.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 456789999998888777778888899998643
No 128
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=30.83 E-value=50 Score=21.87 Aligned_cols=33 Identities=9% Similarity=-0.047 Sum_probs=26.0
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
+..+.+++||..+.=+.....+++.++.+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 456889999999987777777777778888864
No 129
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=30.58 E-value=1.4e+02 Score=21.10 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=55.8
Q ss_pred ceeeEEEEC-CCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH-c-CCc----
Q psy8570 12 VVCVDAFLG-PVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN-F-NWT---- 84 (159)
Q Consensus 12 ~~~v~aiiG-p~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~-f-~W~---- 84 (159)
..+++++|- |............+...++|+|..+..... .+.+..+...+...++..++.|.. . |-+
T Consensus 62 ~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~ 135 (293)
T 3l6u_A 62 HLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRS------DAVVSSITSNNQMIGEQLASYIKNELIKQTGRST 135 (293)
T ss_dssp HTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCC------TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HcCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCCCC------CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCC
Confidence 346666553 433333334445555669999988754321 012345666666666666665555 4 555
Q ss_pred -EEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570 85 -VAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSP 118 (159)
Q Consensus 85 -~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 118 (159)
+++++....+ ......+.+++.+.+++.
T Consensus 136 ~~i~~i~g~~~------~~~~~~R~~gf~~~l~~~ 164 (293)
T 3l6u_A 136 GRIVEITGTAN------VYTTNERHRGFLKGIENE 164 (293)
T ss_dssp EEEEEEECSTT------CHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCC------CchHHHHHHHHHHHHHhC
Confidence 9999975432 123445678888888876
No 130
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=30.46 E-value=1.6e+02 Score=21.62 Aligned_cols=91 Identities=14% Similarity=0.045 Sum_probs=53.5
Q ss_pred ceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570 12 VVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF 90 (159)
Q Consensus 12 ~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~ 90 (159)
..+++++| -|.... . .....+...++|+|..+.... + +.. .+...+..-+...++-|..-|.++++++.
T Consensus 116 ~~~vdGiIi~~~~~~-~-~~~~~l~~~~iPvV~~~~~~~---~----~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 185 (339)
T 3h5o_A 116 QHRPDGVLITGLSHA-E-PFERILSQHALPVVYMMDLAD---D----GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLG 185 (339)
T ss_dssp TTCCSEEEEECSCCC-T-THHHHHHHTTCCEEEEESCCS---S----SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCCCCEEEEeCCCCC-H-HHHHHHhcCCCCEEEEeecCC---C----CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 45666654 222221 1 233445567999997753211 1 111 55666666667667666667999999997
Q ss_pred EeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 91 NNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
.... .....+.++..+.+++.+
T Consensus 186 ~~~~-------~~~~~R~~Gf~~al~~~g 207 (339)
T 3h5o_A 186 AQLD-------ERVMKRLDGYRAALDAAD 207 (339)
T ss_dssp ESCC-------HHHHHHHHHHHHHHHHTT
T ss_pred CCCC-------ccHHHHHHHHHHHHHHCC
Confidence 6532 123456777777777664
No 131
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=30.36 E-value=1.5e+02 Score=21.30 Aligned_cols=100 Identities=16% Similarity=-0.007 Sum_probs=55.2
Q ss_pred cceeeEEEECCCCchh-HHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC---CcEE
Q psy8570 11 FVVCVDAFLGPVCDYV-IAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN---WTVA 86 (159)
Q Consensus 11 ~~~~v~aiiGp~~s~~-~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~---W~~v 86 (159)
...+++++|....... .......+...++|+|..+...... +.. +.+..+...+...++..++-|..-+ -+++
T Consensus 55 ~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-~~~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I 131 (306)
T 2vk2_A 55 VAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK-DKS--LYMTTVTADNILEGKLIGDWLVKEVNGKPCNV 131 (306)
T ss_dssp HHHTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSCCCCS-CGG--GSSEEEECCHHHHHHHHHHHHHHHHTTSCEEE
T ss_pred HHcCCCEEEEeCCChhhHHHHHHHHHHCCCCEEEecCCCCCC-Ccc--ceEEEEecCHHHHHHHHHHHHHHhcCCCCCeE
Confidence 3456777765433322 1223333445789999876532211 100 1234566666666666665554444 6899
Q ss_pred EEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 87 GFMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
+++....+ ......+.++..+.+++.+
T Consensus 132 ~~i~~~~~------~~~~~~R~~Gf~~al~~~g 158 (306)
T 2vk2_A 132 VELQGTVG------ASVAIDRKKGFAEAIKNAP 158 (306)
T ss_dssp EEEECSTT------CHHHHHHHHHHHHHTTTCT
T ss_pred EEEEcCCC------ChhHHHHHHHHHHHHhhCC
Confidence 99975432 1123456778888887764
No 132
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=30.29 E-value=43 Score=22.28 Aligned_cols=31 Identities=10% Similarity=-0.005 Sum_probs=25.4
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
.+++.||+.+.=+.....++..+++|.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 5789999999887777778888999998643
No 133
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=30.28 E-value=45 Score=21.94 Aligned_cols=32 Identities=6% Similarity=-0.080 Sum_probs=25.5
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+.+++.||..+.=+.....++..++.|++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 46789999998887777778888899998643
No 134
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=30.17 E-value=63 Score=23.85 Aligned_cols=89 Identities=7% Similarity=-0.127 Sum_probs=52.0
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++| ....... ..+...++|+|..+.... + .+ ..+...+..-+...++.|...|.+++++|..
T Consensus 114 ~~~vdgiI-~~~~~~~----~~l~~~~iPvV~~~~~~~---~--~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 180 (330)
T 3ctp_A 114 SHRVAGII-ASRSQCE----DEYANIDIPVVAFENHIL---D--NI---ITISSDNYNGGRMAFDHLYEKGCRKILHIKG 180 (330)
T ss_dssp HTTCSEEE-EETCCCS----GGGTTCCSCEEEESSCCC---T--TS---CEEEECHHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred hCCCCEEE-ECCCCCH----HHHHhcCCCEEEEeccCC---C--CC---CEEEeCHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 45678887 4332221 123456899998765322 1 12 2345566556666666666669999999986
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+. .....+.++..+.+++.+
T Consensus 181 ~~~~------~~~~~R~~Gf~~al~~~g 202 (330)
T 3ctp_A 181 PEVF------EATELRYKGFLDGARAKD 202 (330)
T ss_dssp CTTC------HHHHHHHHHHHHHHHHTT
T ss_pred CccC------ccHHHHHHHHHHHHHHcC
Confidence 5321 123445677777776653
No 135
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=30.14 E-value=1.4e+02 Score=20.78 Aligned_cols=94 Identities=9% Similarity=0.060 Sum_probs=55.6
Q ss_pred cEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 40 PVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 40 P~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
-+||-|++...+.+...-| ...+..+.-++.+++...-++. .++++|...+-. . .++.+.+.+...
T Consensus 54 VIISRGgta~~lr~~~~iP-VV~I~~s~~Dil~al~~a~~~~--~kIavvg~~~~~-------~---~~~~~~~ll~~~- 119 (196)
T 2q5c_A 54 AIISRGATSDYIKKSVSIP-SISIKVTRFDTMRAVYNAKRFG--NELALIAYKHSI-------V---DKHEIEAMLGVK- 119 (196)
T ss_dssp EEEEEHHHHHHHHTTCSSC-EEEECCCHHHHHHHHHHHGGGC--SEEEEEEESSCS-------S---CHHHHHHHHTCE-
T ss_pred EEEECChHHHHHHHhCCCC-EEEEcCCHhHHHHHHHHHHhhC--CcEEEEeCcchh-------h---HHHHHHHHhCCc-
Confidence 3456666555444433323 4666778778888877765544 499999876542 1 234444444331
Q ss_pred CCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 120 GSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 120 ~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
+....+. +.++..+.++++++ ..++||+
T Consensus 120 ----i~~~~~~----~~~e~~~~i~~l~~~G~~vvVG 148 (196)
T 2q5c_A 120 ----IKEFLFS----SEDEITTLISKVKTENIKIVVS 148 (196)
T ss_dssp ----EEEEEEC----SGGGHHHHHHHHHHTTCCEEEE
T ss_pred ----eEEEEeC----CHHHHHHHHHHHHHCCCeEEEC
Confidence 2223332 45677888888876 4688775
No 136
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=30.11 E-value=37 Score=23.60 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=24.8
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
+++.||..+.=+.....++..+++++++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 57889999988877888888899999976
No 137
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=30.06 E-value=49 Score=21.79 Aligned_cols=32 Identities=6% Similarity=-0.052 Sum_probs=25.5
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
..+++++||..+.=+.....+++.++.|.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 35789999999988777777888888888753
No 138
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=29.88 E-value=1.5e+02 Score=21.18 Aligned_cols=96 Identities=11% Similarity=-0.005 Sum_probs=55.4
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN 91 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~ 91 (159)
..+++++|--...... .....+...++|+|..+..... .. . .+..+...+..-++..++-|..-|-++++++..
T Consensus 66 ~~~vdGiI~~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~---~~-~-~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 139 (295)
T 3hcw_A 66 QRMVDAFILLYSKEND-PIKQMLIDESMPFIVIGKPTSD---ID-H-QFTHIDNDNILASENLTRHVIEQGVDELIFITE 139 (295)
T ss_dssp TTCCSEEEESCCCTTC-HHHHHHHHTTCCEEEESCCCSS---GG-G-GSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred hCCcCEEEEcCcccCh-HHHHHHHhCCCCEEEECCCCcc---cc-C-CceEEecCcHHHHHHHHHHHHHcCCccEEEEcC
Confidence 4567766632222222 2334455679999987653221 10 0 123445555556666666666669999999986
Q ss_pred eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 92 NYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
..+. .....+.++..+.+++.+
T Consensus 140 ~~~~------~~~~~R~~Gf~~al~~~g 161 (295)
T 3hcw_A 140 KGNF------EVSKDRIQGFETVASQFN 161 (295)
T ss_dssp SSCC------HHHHHHHHHHHHHHHHTT
T ss_pred Cccc------hhHHHHHHHHHHHHHHcC
Confidence 5431 224456778888887764
No 139
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=29.30 E-value=44 Score=24.10 Aligned_cols=34 Identities=15% Similarity=0.018 Sum_probs=26.9
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG 46 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~ 46 (159)
..+++|+||.-+.=+.....++..++++.+..|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~ 60 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGA 60 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCc
Confidence 3578999999998877777788888888886553
No 140
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=29.25 E-value=49 Score=22.09 Aligned_cols=34 Identities=9% Similarity=-0.028 Sum_probs=28.1
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
+.+.+++.||+.+.=+.....++..++.+.+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 4567889999999888878888888999998654
No 141
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=28.62 E-value=55 Score=22.10 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=24.4
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
..++++.||..+.=+.....++.. ++|++...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 457899999998877666667776 99998643
No 142
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=28.47 E-value=59 Score=21.38 Aligned_cols=31 Identities=6% Similarity=-0.151 Sum_probs=24.8
Q ss_pred eeEEEECCCCchhHHHHHHHHh-ccCCcEEcc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSG-VWGIPVLTA 44 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~-~~~iP~is~ 44 (159)
.++++.||+.+.=+.....++. ..+.++++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEecH
Confidence 4678999999988877777887 678888864
No 143
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=27.97 E-value=50 Score=23.20 Aligned_cols=30 Identities=7% Similarity=-0.025 Sum_probs=25.4
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
.+++.||..+.=+.....++..+++|+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 367889999988888888888889999876
No 144
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=27.77 E-value=54 Score=23.15 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=26.7
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
..+++.||..+.=+.....++..+++++++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 48 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLATG 48 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecHH
Confidence 35788999999888888888899999998753
No 145
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=27.71 E-value=50 Score=25.34 Aligned_cols=31 Identities=6% Similarity=0.041 Sum_probs=27.1
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
+++++.||+.+.=+.....++..++.++|+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~ 36 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISV 36 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence 4789999999998888888999999999875
No 146
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=27.59 E-value=36 Score=23.78 Aligned_cols=31 Identities=6% Similarity=-0.065 Sum_probs=26.3
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
..+++.||+.+.=+.....++..++.++++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4678999999988888888889999998874
No 147
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=26.18 E-value=48 Score=27.14 Aligned_cols=32 Identities=16% Similarity=0.092 Sum_probs=27.4
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
++++.+.|...+.....+..++..+++|+++.
T Consensus 220 ~rPvIl~G~~~~~a~~~l~~lae~~~~PV~~t 251 (556)
T 3hww_A 220 KRGVVVAGRMSAEEGKKVALWAQTLGWPLIGD 251 (556)
T ss_dssp SCEEEEECBCCHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCeEEEECCCChHHHHHHHHHHHhcCCEEEEc
Confidence 56888889887777888999999999999864
No 148
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=25.77 E-value=71 Score=21.57 Aligned_cols=33 Identities=6% Similarity=-0.196 Sum_probs=26.2
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhcc-CCcEEcc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVW-GIPVLTA 44 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~-~iP~is~ 44 (159)
+...+++.||..+.=+.....++..+ ++|++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 34578999999998888888888887 5887754
No 149
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=25.08 E-value=44 Score=22.96 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=25.9
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccC--CcEEccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWG--IPVLTAG 45 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~--iP~is~~ 45 (159)
+..+++++||..+.=+.....+++.++ ++++...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d 40 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMD 40 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecC
Confidence 345889999999988777777778777 7777543
No 150
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=24.98 E-value=74 Score=21.69 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=22.7
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
.+++++||..+.=+.....+++ ++.|++..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 3689999998877765555665 89998864
No 151
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=24.52 E-value=64 Score=20.43 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=24.0
Q ss_pred EEEECCCCchhHHHHHHHHhccCCcEE
Q psy8570 16 DAFLGPVCDYVIAPVARYSGVWGIPVL 42 (159)
Q Consensus 16 ~aiiGp~~s~~~~~va~~~~~~~iP~i 42 (159)
+.++||.-.+.-..+...+...++|+.
T Consensus 56 vvLLgPQV~y~~~~ik~~~~~~~ipV~ 82 (108)
T 3nbm_A 56 LIILAPQVRSYYREMKVDAERLGIQIV 82 (108)
T ss_dssp EEEECGGGGGGHHHHHHHHTTTTCEEE
T ss_pred EEEEChHHHHHHHHHHHHhhhcCCcEE
Confidence 577899999999999999999999986
No 152
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=24.28 E-value=63 Score=22.03 Aligned_cols=32 Identities=9% Similarity=0.023 Sum_probs=26.5
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
.++++.||..+.=+.....++..++.+.+...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 47899999999888777888888899888643
No 153
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=24.15 E-value=83 Score=21.70 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=24.0
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
..++++.||..+.=+.....++. +++|.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 35789999999887766666666 89998864
No 154
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=24.14 E-value=73 Score=20.76 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=24.0
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
.+++.|+..+.=+.....++..++.|++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 367889999888777777788889999863
No 155
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=24.04 E-value=1.8e+02 Score=20.88 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=54.2
Q ss_pred EEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCC
Q psy8570 41 VLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSG 120 (159)
Q Consensus 41 ~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 120 (159)
+||-|++...+.+...-| ..-+..+.-++.+++...-+ ++ .++++|...+-. ..++.+.+.+...
T Consensus 67 IISRGgta~~Lr~~~~iP-VV~I~vs~~Dil~aL~~a~~-~~-~kIavVg~~~~~----------~~~~~i~~ll~~~-- 131 (225)
T 2pju_A 67 IIAAGSNGAYLKSRLSVP-VILIKPSGYDVLQFLAKAGK-LT-SSIGVVTYQETI----------PALVAFQKTFNLR-- 131 (225)
T ss_dssp EEEEHHHHHHHHTTCSSC-EEEECCCHHHHHHHHHHTTC-TT-SCEEEEEESSCC----------HHHHHHHHHHTCC--
T ss_pred EEeCChHHHHHHhhCCCC-EEEecCCHHHHHHHHHHHHh-hC-CcEEEEeCchhh----------hHHHHHHHHhCCc--
Confidence 456565544444332223 46666777777777666644 44 589999876532 2344455544432
Q ss_pred CCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570 121 SNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS 155 (159)
Q Consensus 121 ~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~ 155 (159)
+....+ .+.++..+.++++++ ..++||+
T Consensus 132 ---i~~~~~----~~~ee~~~~i~~l~~~G~~vVVG 160 (225)
T 2pju_A 132 ---LDQRSY----ITEEDARGQINELKANGTEAVVG 160 (225)
T ss_dssp ---EEEEEE----SSHHHHHHHHHHHHHTTCCEEEE
T ss_pred ---eEEEEe----CCHHHHHHHHHHHHHCCCCEEEC
Confidence 122333 246778888888886 4688775
No 156
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=23.92 E-value=69 Score=21.79 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=23.7
Q ss_pred eEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
.+++.||..+.=+.....+++ .++|++...
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 578999998887776667777 899988644
No 157
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=23.53 E-value=69 Score=21.60 Aligned_cols=34 Identities=12% Similarity=-0.096 Sum_probs=26.4
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhc-cCCcEEccc
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGV-WGIPVLTAG 45 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~-~~iP~is~~ 45 (159)
+...+++.||..+.=+.....++.. ++.|+++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 3457899999988877767777777 699999754
No 158
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=22.66 E-value=1.6e+02 Score=18.89 Aligned_cols=83 Identities=12% Similarity=0.132 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHcCCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHH-HHHHHHHH
Q psy8570 68 SLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEK-LKEQLIAI 146 (159)
Q Consensus 68 ~~~~~a~~~ll~~f~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~-~~~~L~~~ 146 (159)
..|-..+-......||.-+.+ |.+....+...+++ .++.|.+.++... +-.+.+..+++...+..+ ...+++.+
T Consensus 24 ~~Q~~~l~~~a~~~g~~~~~~-~~D~g~Sg~~~~Rp---~l~~ll~~~~~g~-~d~lvv~~ldRl~R~~~~~~~~~~~~l 98 (138)
T 3bvp_A 24 DEQIDRLTKYAEAMGWQVSDT-YTDAGFSGAKLERP---AMQRLINDIENKA-FDTVLVYKLDRLSRSVRDTLYLVKDVF 98 (138)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE-EEEETCCSSSSCCH---HHHHHHHGGGGTS-CSEEEESSHHHHCSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCEEEEE-EEeCCCcCCCCCCH---HHHHHHHHHHhCC-CCEEEEEeCCcccccHHHHHHHHHHHH
Confidence 345566666667779976654 44432211122343 4566777777653 223333344443334455 44555555
Q ss_pred hc-CceEEEe
Q psy8570 147 TK-RARIIKS 155 (159)
Q Consensus 147 ~~-~aRIii~ 155 (159)
++ ..+++.+
T Consensus 99 ~~~gv~l~~~ 108 (138)
T 3bvp_A 99 TKNKIDFISL 108 (138)
T ss_dssp GGGTCEEEET
T ss_pred HHCCCEEEEe
Confidence 54 5676654
No 159
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=22.66 E-value=77 Score=21.09 Aligned_cols=30 Identities=17% Similarity=-0.041 Sum_probs=23.8
Q ss_pred eEEEECCCCchhHHHHHHHHhcc---CCcEEcc
Q psy8570 15 VDAFLGPVCDYVIAPVARYSGVW---GIPVLTA 44 (159)
Q Consensus 15 v~aiiGp~~s~~~~~va~~~~~~---~iP~is~ 44 (159)
++++.|+..+.=+.....++..+ ++|+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 46889999998877777777776 8998864
No 160
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=22.29 E-value=70 Score=21.17 Aligned_cols=31 Identities=6% Similarity=-0.195 Sum_probs=21.5
Q ss_pred ceeeEEEECCCCchhHHHHHHHHhccCCcEE
Q psy8570 12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVL 42 (159)
Q Consensus 12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~i 42 (159)
+..++.+.|+..+.=+.....++..++.|++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 3457889999999888777778888899988
No 161
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=22.11 E-value=68 Score=26.52 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=28.2
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAG 45 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~ 45 (159)
++++.+.|..+......+..++..+++|+++..
T Consensus 213 ~rPvIl~G~g~~~a~~~l~~lae~~~~PV~~t~ 245 (603)
T 4feg_A 213 ERPLIYYGIGARKAGKELEQLSKTLKIPLMSTY 245 (603)
T ss_dssp SSEEEEECGGGTTCHHHHHHHHHHHTCCEEECG
T ss_pred CCeEEEECCCchhHHHHHHHHHHHHCCCEEEcC
Confidence 567888998887778889999999999999754
No 162
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=21.81 E-value=50 Score=26.92 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=27.3
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
++++.+.|..+......+..++..+++|+++.
T Consensus 202 ~rpvIl~G~g~~~a~~~l~~lae~~~~Pv~~t 233 (549)
T 3eya_A 202 SNIALMCGSGCAGAHKELVEFAGKIKAPIVHA 233 (549)
T ss_dssp CSEEEEECGGGTTCHHHHHHHHHHHTCCEEEC
T ss_pred CCcEEEECCCchHHHHHHHHHHHHhCCCEEEC
Confidence 56777889888777888999999999999864
No 163
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=21.24 E-value=1.9e+02 Score=19.18 Aligned_cols=82 Identities=7% Similarity=0.005 Sum_probs=41.9
Q ss_pred HHHHHHHHHHH-cCCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc
Q psy8570 70 VGQAVQSILKN-FNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK 148 (159)
Q Consensus 70 ~~~a~~~ll~~-f~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~ 148 (159)
|-..+-..... .||.-+.+..+....+....+++ .++.|.+.++... +-.+.+..+++...+..+...+++.+.+
T Consensus 28 Q~~~~~~~a~~~~g~~~~~~~~D~g~Sg~~~~~Rp---~l~~ll~~~~~g~-id~vvv~~ldRl~R~~~~~~~~~~~l~~ 103 (169)
T 3g13_A 28 QVQYYTDMIKKNKEWVLADIYADEAITGTQVTKRE---DFQRMINDCMNGE-IDMVFTKSISRFARNTLDTLKYVRMLKE 103 (169)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEEEEC------CCSH---HHHHHHHHHHTTC-CSEEEESCHHHHCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCeEEEEEeeCCccCCCcCCCH---HHHHHHHHHHcCC-CcEEEEEeccccccChHHHHHHHHHHHH
Confidence 44444444443 58976654433322211112343 4566777777653 2233334455444456677778877765
Q ss_pred -CceEEEe
Q psy8570 149 -RARIIKS 155 (159)
Q Consensus 149 -~aRIii~ 155 (159)
..+|+++
T Consensus 104 ~gv~l~~~ 111 (169)
T 3g13_A 104 RNIAVYFE 111 (169)
T ss_dssp TTCEEEET
T ss_pred cCCEEEEe
Confidence 4676654
No 164
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=20.87 E-value=68 Score=25.56 Aligned_cols=32 Identities=9% Similarity=-0.084 Sum_probs=27.2
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
+++++|.||+.+.=+.....++..++..+|+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 46889999999988888888999888888875
No 165
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=20.58 E-value=1e+02 Score=21.92 Aligned_cols=27 Identities=11% Similarity=0.012 Sum_probs=22.1
Q ss_pred eeEEEECCCCchhHHHHHHHHhccCCc
Q psy8570 14 CVDAFLGPVCDYVIAPVARYSGVWGIP 40 (159)
Q Consensus 14 ~v~aiiGp~~s~~~~~va~~~~~~~iP 40 (159)
.+++|.||+.+.=+.....++..++.|
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 478999999998877666777778888
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=20.53 E-value=92 Score=21.22 Aligned_cols=32 Identities=9% Similarity=-0.070 Sum_probs=25.4
Q ss_pred eeeEEEECCCCchhHHHHHHHHhccCCcEEcc
Q psy8570 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA 44 (159)
Q Consensus 13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~ 44 (159)
..+.+++||..+.=+.....+++.++.+.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~ 60 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAEA 60 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEEG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEcc
Confidence 45899999999887777777778778877753
No 167
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=20.37 E-value=2.9e+02 Score=21.04 Aligned_cols=101 Identities=10% Similarity=-0.027 Sum_probs=59.6
Q ss_pred eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570 9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF 88 (159)
Q Consensus 9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~ 88 (159)
.....+++++|-... .......+...++|+|..+...... ...+.+..+...+..-+...++-|..-|-+++++
T Consensus 71 ~l~~~~vDGiIi~~~---~~~~~~~l~~~~iPvV~i~~~~~~~---~~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~ 144 (412)
T 4fe7_A 71 KIKDWLGDGVIADFD---DKQIEQALADVDVPIVGVGGSYHLA---ESYPPVHYIATDNYALVESAFLHLKEKGVNRFAF 144 (412)
T ss_dssp ----CCCSEEEEETT---CHHHHHHHTTCCSCEEEEEECCSSG---GGSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hHhcCCCCEEEEecC---ChHHHHHHhhCCCCEEEecCCcccc---ccCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEE
Confidence 344566777764221 2234455666799999877543211 0112345566777777777777777779999999
Q ss_pred EEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570 89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPS 119 (159)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 119 (159)
+...... .......+.++..+.+.+.+
T Consensus 145 i~~~~~~----~~~~~~~R~~Gf~~al~~~g 171 (412)
T 4fe7_A 145 YGLPESS----GKRWATEREYAFRQLVAEEK 171 (412)
T ss_dssp ECCCTTS----CCHHHHHHHHHHHHHHTTSS
T ss_pred ecccccc----cccHHHHHHHHHHHHHHHcC
Confidence 9765431 00014456788888888764
No 168
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=20.20 E-value=2.5e+02 Score=20.24 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=55.7
Q ss_pred cceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH-------cC
Q psy8570 11 FVVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN-------FN 82 (159)
Q Consensus 11 ~~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~-------f~ 82 (159)
...+++++| .|..+.........+...++|+|..+...... .... ..+...+...++..++.|.. -|
T Consensus 56 ~~~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~---~~~~--~~V~~D~~~~g~~a~~~l~~~~~~~~~~G 130 (330)
T 3uug_A 56 VTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNS---GDVS--YYATFDNFQVGVLQATSITDKLGLKDGKG 130 (330)
T ss_dssp HHHTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCSC---TTCC--EEEEECHHHHHHHHHHHHHHHHTGGGTCC
T ss_pred HHcCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCCC---Ccee--EEEEeCHHHHHHHHHHHHHHHhcccCCCC
Confidence 345677665 55554444555566667799999877543221 1122 34555666666666666655 58
Q ss_pred CcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcC
Q psy8570 83 WTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITS 117 (159)
Q Consensus 83 W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 117 (159)
-++++++..... ......+.++..+.+++
T Consensus 131 ~~~i~~i~g~~~------~~~~~~R~~Gf~~al~~ 159 (330)
T 3uug_A 131 PFNIELFGGSPD------DNNAFFFYDGAMSVLKP 159 (330)
T ss_dssp CEEEEECBCCTT------CHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCC------CchHHHHHHHHHHHHHh
Confidence 889999865432 12234455666665554
No 169
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=20.02 E-value=2e+02 Score=19.02 Aligned_cols=82 Identities=7% Similarity=0.080 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEeCCC-cCCCCCCchHhHHHHHHHHHcCCCC-CCcceeeeeeccCCChHHHHHHHHHHh
Q psy8570 70 VGQAVQSILKNFNWTVAGFMFNNYGQ-TTGKGNSNCWFTIASVYKIITSPSG-SNDMKLESFDEETVTPEKLKEQLIAIT 147 (159)
Q Consensus 70 ~~~a~~~ll~~f~W~~v~~i~~~~~~-~~~~~~~~~~~~~~~L~~~l~~~~~-~~~~~~~~f~~~~~~~~~~~~~L~~~~ 147 (159)
|-..+-......||.-+. +|.+... +....+++ .++.|.+.++.... +-.+.+..+++...+..+...+++.+.
T Consensus 27 Q~~~l~~~a~~~g~~i~~-~~~D~g~Sg~~~~~Rp---~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~~~~~~~~~~~l~ 102 (167)
T 3guv_A 27 QKSRMKAFAIYNDYEIVG-EYEDAGKSGKSIEGRI---QFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQ 102 (167)
T ss_dssp HHHHHHHHHHHTTCEEEE-EEEECCCSSSSSCCCH---HHHHHHHHHHTCTTCCSEEEESCGGGTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEE-EEeecCCCCCCcccCH---HHHHHHHHHHcCCCCccEEEEEeCchhcCCHHHHHHHHHHHH
Confidence 344455555556997555 4454322 11112343 45666676766420 223344455554445667777777776
Q ss_pred c-CceEEEe
Q psy8570 148 K-RARIIKS 155 (159)
Q Consensus 148 ~-~aRIii~ 155 (159)
+ ..+|+.+
T Consensus 103 ~~gv~l~~~ 111 (167)
T 3guv_A 103 DYGVNLICV 111 (167)
T ss_dssp HTTCEEEET
T ss_pred HCCCEEEEe
Confidence 5 5676654
Done!