RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8570
(159 letters)
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein
fold, dimer, hormone/growth FACT receptor, lyase
complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP:
c.93.1.1 PDB: 1t34_A* 3a3k_A*
Length = 435
Score = 92.2 bits (228), Expect = 9e-23
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 6/140 (4%)
Query: 14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQA 73
FLGP C Y APV R++ W +P+LTAG +K EY TR S +G
Sbjct: 77 SPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDF 136
Query: 74 VQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEET 133
V ++ + W + + C+F + +Y + ++ + +
Sbjct: 137 VTALHRRLGWEHQALVLYADRLGD---DRPCFFIVEGLYMRVRE---RLNITVNHQEFVE 190
Query: 134 VTPEKLKEQLIAITKRARII 153
P+ + L A+ ++ R+I
Sbjct: 191 GDPDHYPKLLRAVRRKGRVI 210
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 87.5 bits (216), Expect = 4e-21
Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 10/140 (7%)
Query: 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQA 73
D LGPVC+Y APVAR + W +P+L+AG L A F+ K EY LTR+ +++ +G+
Sbjct: 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEM 144
Query: 74 VQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEET 133
+ ++ ++ +W+ A ++++ K NC+FT+ V+++ + + +
Sbjct: 145 MLALFRHHHWSRAALVYSD-----DKLERNCYFTLEGVHEVF----QEEGLHTSIYSFDE 195
Query: 134 VTPEKLKEQLIAITKRARII 153
L++ + I R++
Sbjct: 196 TKDLDLEDIVRNIQASERVV 215
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
module, G-protein coupled receptor, signaling; 2.38A
{Homo sapiens} PDB: 4f12_A*
Length = 433
Score = 56.1 bits (135), Expect = 4e-10
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Query: 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
G VC V + +A W + L+ K +YP R + S + V A+
Sbjct: 86 HLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAI 145
Query: 75 QSILKNFNWTVAGFMF--NNYGQTT 97
+LK++ W G +
Sbjct: 146 LKLLKHYQWKRVGTLTQDVQRFSEV 170
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION
channel, NMDA receptor, allosteri modulation,
phenylethanolamine, polyamine; HET: NAG BMA; 2.00A
{Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Length = 384
Score = 48.2 bits (114), Expect = 2e-07
Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 10/151 (6%)
Query: 13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQ 72
+ V P P++ +G + IPV+ ++ + K + + R + +S
Sbjct: 69 ILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQAL 128
Query: 73 AVQSILKNFNWTVAGFMF--NNYG-------QTTGKGNSNCWFTIASVYKIITSPSGSND 123
+++ FNW + ++ G +T +G + S
Sbjct: 129 VWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRG 188
Query: 124 MKLESFDEETVTPEKLKEQLIAITK-RARII 153
K + + + L L+ + AR+I
Sbjct: 189 PKADKVLQFEPGTKNLTALLLEAKELEARVI 219
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane,
glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus
norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Length = 395
Score = 43.6 bits (102), Expect = 9e-06
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
V A GP V G+P + + + + FS + +A+
Sbjct: 72 VAAIFGPSHSSSANAVQSICNALGVPHIQTR--WKHQVSDNKDSFYVSLYPDFSSLSRAI 129
Query: 75 QSILKNFNWTVAGFMFNN 92
+++ F W ++++
Sbjct: 130 LDLVQFFKWKTVTVVYDD 147
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL
membrane, endoplasmic reticulum, glycoprotein, ION TRA
ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus}
PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Length = 376
Score = 42.9 bits (100), Expect = 1e-05
Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
V A G + + + G + +T F +P + +M A+
Sbjct: 61 VYAIFGFYDKKSVNTITSFCGTLHVSFITPS-----FPTDGTHPFVIQMRPDLK---GAL 112
Query: 75 QSILKNFNWTVAGFMFNNY 93
S+++ + W +++++
Sbjct: 113 LSLIEYYQWDKFAYLYDSD 131
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 41.4 bits (97), Expect = 5e-05
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 17 AFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQS 76
+GP V V ++ IP + + K Y R++ S +L +A+
Sbjct: 131 GVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLD 190
Query: 77 ILKNFNWTVAGFMF--NNYGQ 95
I+K +NWT + NYG+
Sbjct: 191 IVKRYNWTYVSAVHTEGNYGE 211
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION
channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus}
PDB: 3om1_A* 3qlu_A* 3qlv_A
Length = 393
Score = 41.3 bits (96), Expect = 5e-05
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Query: 15 VDAFLGP-VCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQA 73
V + LGP + V+ G IP + G L++ + S V A
Sbjct: 71 VVSVLGPSSSPASASTVSHICGEKEIPHIKVG-PEETPRLQYLRFASVSLYPSNEDVSLA 129
Query: 74 VQSILKNFNWTVAGFMFNNYGQTTG 98
V ILK+FN+ A +
Sbjct: 130 VSRILKSFNYPSASLICAKAECLLR 154
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99; 2.80A {Homo
sapiens} PDB: 2e4z_A*
Length = 481
Score = 40.6 bits (95), Expect = 8e-05
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
V +G V VA ++ IP ++ Y +R++ S QA+
Sbjct: 118 VVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAM 177
Query: 75 QSILKNFNWTVAGFMF--NNYGQ 95
I+K W + +YG+
Sbjct: 178 VDIVKALGWNYVSTLASEGSYGE 200
>3o21_A Glutamate receptor 3; periplasmatic binding protein,
oligomerization, membrane, TR protein; HET: NAG; 2.20A
{Rattus norvegicus} PDB: 3p3w_A
Length = 389
Score = 39.8 bits (92), Expect = 2e-04
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
V A G + + + G +T F + + +M + A+
Sbjct: 70 VYAIFGFYDQMSMNTLTSFCGALHTSFVTPS-----FPTDADVQFVIQMRPALK---GAI 121
Query: 75 QSILKNFNWTVAGFMFNNY 93
S+L + W ++++
Sbjct: 122 LSLLSYYKWEKFVYLYDTE 140
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics,
structural genomics consortium, SGC, CE membrane,
G-protein coupled receptor; HET: Z99; 2.26A {Homo
sapiens}
Length = 479
Score = 37.9 bits (88), Expect = 7e-04
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
+ +G V VA ++ IP ++ A K Y R + +A+
Sbjct: 117 IAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAM 176
Query: 75 QSILKNFNWTVAGFMF--NNYGQ 95
IL+ FNWT + +YG+
Sbjct: 177 AEILRFFNWTYVSTVASEGDYGE 199
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 35.9 bits (82), Expect = 0.003
Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
V A G + + + G + +T + ++ R + +A+
Sbjct: 68 VYAIFGFYERRTVNMLTSFCGALHVCFITPS---FPVDTSNQFVLQLR-----PELQEAL 119
Query: 75 QSILKNFNWTVAGFMFNNYGQTTG 98
SI+ ++ W ++++ +
Sbjct: 120 ISIIDHYKWQTFVYIYDADRGLSV 143
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel,
allosteric modulation, phenylethanolamine,
N-glycosylation, extracellular; HET: NAG BMA MAN FUC
QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A*
3jpy_A*
Length = 364
Score = 34.0 bits (77), Expect = 0.015
Identities = 13/123 (10%), Positives = 37/123 (30%), Gaps = 17/123 (13%)
Query: 15 VDAFLGPV---CDYVIAPVARYSGVWGIPVLT-AGGLVANFELKFEYPTLTRMMGSFSLV 70
+ + + + + S P+L GG K E + S
Sbjct: 64 IQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQ 123
Query: 71 GQAVQSILKNFNWTVAGFMF--NNYG-------QTTGKGNSNCWFTIASVYKIITSPSGS 121
+ +I++ ++W + + ++T + + W + +++
Sbjct: 124 ASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGW----ELEEVLLLDMSL 179
Query: 122 NDM 124
+D
Sbjct: 180 DDG 182
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.022
Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 53/166 (31%)
Query: 10 GFVVCVDAF----LGPVCDYVIAPVARYSGVW----GIPVLTA-GGLVANFELKFEY-PT 59
G + F LG +Y A + + V + V+ G + + E +
Sbjct: 1751 GLIPADATFAGHSLG---EYA-ALAS-LADVMSIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 60 LTRMMG--------SFSL--VGQAVQSILKNFNWTV--AGFMFNNY---GQTT---GKGN 101
M+ SFS + V+ + K W V NY Q G
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV-----NYNVENQQYVAAG--- 1857
Query: 102 SNCWFTIASVYKIITSPSGSNDMKLESFD----EETVTPEKLKEQL 143
+ ++ + N +KL+ D +++++ E+++ L
Sbjct: 1858 -----DLRALDTVTNVL---NFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 28.9 bits (64), Expect = 0.85
Identities = 27/159 (16%), Positives = 48/159 (30%), Gaps = 51/159 (32%)
Query: 18 FLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKF----EYPTLT-RMMGSFSLVGQ 72
FLG YV + V VL + FE + + L +++
Sbjct: 64 FLG----YVSSLVEPSKVGQFDQVLNL--CLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 73 AVQSILKNF-----------------------NWTVAGFM--FNNYGQTTGKGNSNCWFT 107
+ ++KN+ A + F GQ GN++ +F
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--GQ----GNTDDYFE 171
Query: 108 -IASVYKIITSPSGSNDM------KLESFDEETVTPEKL 139
+ +Y+ T D+ L T+ EK+
Sbjct: 172 ELRDLYQ--TYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 32.8 bits (75), Expect = 0.037
Identities = 17/80 (21%), Positives = 29/80 (36%)
Query: 5 CFYRTGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMM 64
+ + + +G V VA ++ IP ++ A K Y R +
Sbjct: 108 YAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTV 167
Query: 65 GSFSLVGQAVQSILKNFNWT 84
+A+ IL+ FNWT
Sbjct: 168 PPDFYQAKAMAEILRFFNWT 187
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural
genomics,MCSG, PSI, protein structure initiative; 2.00A
{Pseudomonas aeruginosa} SCOP: b.45.1.1
Length = 247
Score = 30.0 bits (66), Expect = 0.25
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 129 FDEETVTPEKLKEQLIAITKRAR 151
F P +++ L+ + + R
Sbjct: 216 FPAACGNPGAVRQALVQLARAER 238
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens
STR. C58 structural genomics, PSI-2, protein structure
initiative; 1.94A {Agrobacterium tumefaciens}
Length = 258
Score = 27.6 bits (60), Expect = 2.0
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 129 FDEETVTPEKLKEQLIAITKRA 150
F E T ++ ++ L + K +
Sbjct: 237 FAERVETLKQFEKALAQLLKGS 258
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
3fik_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L*
3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L
1vs6_L 2aw4_L 2awb_L 1vt2_L 2i2v_L ...
Length = 143
Score = 27.1 bits (61), Expect = 2.0
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 125 KLESFDEETVTPEKLKEQLIAITKRARIIKSL 156
L + V LK I I + K +
Sbjct: 80 DLAKVEGGVVDLNTLKAANI-IGIQIEFAKVI 110
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J*
1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I*
3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Length = 156
Score = 26.7 bits (60), Expect = 2.6
Identities = 6/32 (18%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 125 KLESFDEETVTPEKLKEQLIAITKRARIIKSL 156
+L+ ++ T + L+ + + ++ R +K L
Sbjct: 79 QLQDLEDTTFDRDTLEAYRL-VRRKNRPVKLL 109
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels,
tetramerization domain, T1 domain, transport PR; 2.60A
{Homo sapiens} SCOP: d.42.1.2
Length = 124
Score = 26.3 bits (58), Expect = 3.5
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 5/23 (21%)
Query: 2 YILCFYRTGFV-----VCVDAFL 19
+L FYRTG + C+ A+
Sbjct: 66 CVLNFYRTGKLHYPRYECISAYD 88
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1,
membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Length = 140
Score = 25.9 bits (57), Expect = 5.0
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 5/23 (21%)
Query: 2 YILCFYRTGFV-----VCVDAFL 19
+L FYRTG + C+ A+
Sbjct: 88 CVLNFYRTGKLHYPRYECISAYD 110
>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28;
AT1G70830, BET V1-like, structural genomics, protein
structure initiative; NMR {Arabidopsis thaliana}
Length = 166
Score = 25.7 bits (56), Expect = 5.4
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 107 TIASVYKIITSPSGSND-----MKLESFDEETVTPEKLKEQLIAITK 148
+ ++ P G ++ E EE PE L + + ++K
Sbjct: 110 SFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHPETLLQFCVEVSK 156
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated
potassium channel SHAL, membrane protein; 2.10A {Rattus
norvegicus} SCOP: d.42.1.2
Length = 105
Score = 25.4 bits (56), Expect = 5.7
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 5/23 (21%)
Query: 2 YILCFYRTGFV-----VCVDAFL 19
+IL FYRTG + C+ A+
Sbjct: 53 HILNFYRTGKLHYPRHECISAYD 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.422
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,435,839
Number of extensions: 134288
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 28
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)