RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8570
(159 letters)
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 477
Score = 46.9 bits (110), Expect = 2e-07
Identities = 22/117 (18%), Positives = 41/117 (35%)
Query: 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
+ +GP V V ++ IP + + K Y R++ S +L +A+
Sbjct: 121 IAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAM 180
Query: 75 QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDE 131
I+K +NWT + ++ I S ++ +SFD
Sbjct: 181 LDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDR 237
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
natriuretic peptide receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 425
Score = 40.5 bits (93), Expect = 4e-05
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 7/131 (5%)
Query: 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
FLGP C Y APV R++ W +P+LTAG +K EY TR S +G V
Sbjct: 78 PAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFV 137
Query: 75 QSILKNFNWTVAGFMF--NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEE 132
++ + W + + G + C+F + +Y + E + +
Sbjct: 138 TALHRRLGWEHQALVLYADRLGD-----DRPCFFIVEGLYMRVRERLNITVNHQEFVEGD 192
Query: 133 TVTPEKLKEQL 143
KL +
Sbjct: 193 PDHYPKLLRAV 203
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial
natriuretic peptide receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 401
Score = 39.7 bits (91), Expect = 6e-05
Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFE-YPTLTRMMGSFSLVGQA 73
D LGPVC+Y APVAR + W +P+L+AG L A F+ K Y LTR+ +++ +G+
Sbjct: 83 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEM 142
Query: 74 VQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEET 133
+ ++ ++ +W+ A ++++ + + + + S D + E+
Sbjct: 143 MLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDI 202
Query: 134 VTPEKLKEQLIAI 146
V + E+++ +
Sbjct: 203 VRNIQASERVVIM 215
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 238
Score = 28.6 bits (63), Expect = 0.25
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 129 FDEETVTPEKLKEQLIAITKRAR 151
F P +++ L+ + + R
Sbjct: 212 FPAACGNPGAVRQALVQLARAER 234
>d1e25a_ e.3.1.1 (A:) beta-Lactamase, class A {Pseudomonas
aeruginosa, PER-1 [TaxId: 287]}
Length = 278
Score = 28.3 bits (62), Expect = 0.38
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 68 SLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIIT 116
L+ + ++SI+ TV ++ N F + SV+K+
Sbjct: 2 PLLKEQIESIVIGKKATVGVAVWGPDDLEPLLINPFEKFPMQSVFKLHL 50
>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 120
Score = 26.7 bits (59), Expect = 0.89
Identities = 8/84 (9%), Positives = 21/84 (25%), Gaps = 24/84 (28%)
Query: 66 SFSLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSN-CWFTIASVYKIITSPSGSNDM 124
+ + G +Q K ++ T G + +
Sbjct: 51 TIQMSGSEIQKYFKTLKGSI---------AVTPIGVGDGSHVVWTFHF------------ 89
Query: 125 KLESFDEETVTPEKLKEQLIAITK 148
E ++ P + ++ + K
Sbjct: 90 --EKVHKDIDDPHSIIDESVKYFK 111
>d1djaa_ e.3.1.1 (A:) beta-Lactamase, class A {Staphylococcus aureus
[TaxId: 1280]}
Length = 258
Score = 25.1 bits (54), Expect = 4.2
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 72 QAVQSILKNFNWTVAGFMFN-NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFD 130
+ + + K +N + + + G+ NS+ F AS I S + +
Sbjct: 2 KELNDLEKKYNAHIGVYALDTKSGKEVKF-NSDKRFAYASTSHAINSAILLEQVPYNKLN 60
Query: 131 EE-TVTPEKLKE 141
++ + + +
Sbjct: 61 KKVHINKDDIVA 72
>d1n9ba_ e.3.1.1 (A:) beta-Lactamase, class A {Klebsiella
pneumoniae, SHV-2 [TaxId: 573]}
Length = 265
Score = 24.5 bits (52), Expect = 6.8
Identities = 6/46 (13%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 72 QAVQSILKNFNWTVAGFMFN-NYGQTTGKGNSNCWFTIASVYKIIT 116
+ ++ + V + G+T ++ F + S +K++
Sbjct: 6 EQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVL 51
>d1m40a_ e.3.1.1 (A:) beta-Lactamase, class A {Escherichia coli,
TEM-1 [TaxId: 562]}
Length = 263
Score = 24.5 bits (52), Expect = 6.8
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 72 QAVQSILKNFNWTVAGFMFN-NYGQTTGKGNSNCWFTIASVYKIIT 116
V+ V + N G+ F + S +K++
Sbjct: 6 VKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLL 51
>d1g6aa_ e.3.1.1 (A:) beta-Lactamase, class A {Pseudomonas
aeruginosa, PSE-4 carbenicillinase [TaxId: 287]}
Length = 266
Score = 24.4 bits (52), Expect = 7.4
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 72 QAVQSILKNFNWTVAGFMFN-NYGQTTGKGNSNCWFTIASVYKIIT 116
Q V++I + + + + + G+ N N F + S +K I
Sbjct: 8 QDVKAIEVSLSARIGVSVLDTQNGEYWDY-NGNQRFPLTSTFKTIA 52
>d1h2ca_ b.31.1.1 (A:) EV matrix protein {Ebola virus [TaxId:
205488]}
Length = 125
Score = 23.8 bits (51), Expect = 7.9
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 38 GIPVLTAGGLVANFELKFEYPTLTRMMGSF--SLVGQAVQSILK 79
IP+ G+ F+ T M+ S+ + G+A +++
Sbjct: 23 QIPIWLPLGVADQKTYSFDSTTAAIMLASYTITHFGKATNPLVR 66
>d1bsga_ e.3.1.1 (A:) beta-Lactamase, class A {Streptomyces albus G
[TaxId: 1962]}
Length = 266
Score = 24.0 bits (51), Expect = 9.2
Identities = 6/46 (13%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 72 QAVQSILKNFNWTVAGFMFN-NYGQTTGKGNSNCWFTIASVYKIIT 116
+ + + + + + ++ G+T ++ F + SV+K ++
Sbjct: 5 RRLAGLERASGARLGVYAYDTGSGRTVAY-RADELFPMCSVFKTLS 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.422
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 600,708
Number of extensions: 26101
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 15
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.8 bits)