BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8573
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 57.0 bits (136), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 5 SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVR 64
S VV++CA+ T+R I+L A M SG+Y FFNIELF+S + + W D
Sbjct: 253 SERVVIMCASSDTIRSIMLVAHRHGMT-SGDYAFFNIELFNSSSYGDGS-W---KRGDKH 307
Query: 65 NERARKAYTALLTVTARTPNNEAYRNFSSELLSAV 99
+ A++AY++L TVT + FS E+ S+V
Sbjct: 308 DFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSV 342
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 57.0 bits (136), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 5 SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVR 64
S VV++CA+ T+R I+L A M SG+Y FFNIELF+S + + W D
Sbjct: 254 SERVVIMCASSDTIRSIMLVAHRHGMT-SGDYAFFNIELFNSSSYGDGS-W---KRGDKH 308
Query: 65 NERARKAYTALLTVTARTPNNEAYRNFSSELLSAV 99
+ A++AY++L TVT + FS E+ S+V
Sbjct: 309 DFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSV 343
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
Length = 441
Score = 57.0 bits (136), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 5 SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVR 64
S VV++CA+ T+R I+L A M SG+Y FFNIELF+S + + W D
Sbjct: 211 SERVVIMCASSDTIRSIMLVAHRHGMT-SGDYAFFNIELFNSSSYGDGS-W---KRGDKH 265
Query: 65 NERARKAYTALLTVTARTPNNEAYRNFSSELLSAV 99
+ A++AY++L TVT + FS E+ S+V
Sbjct: 266 DFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSV 300
>pdb|1DP4|A Chain A, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
pdb|1DP4|C Chain C, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
pdb|1T34|A Chain A, Rotation Mechanism For Transmembrane Signaling By The
Atrial Natriuretic Peptide Receptor
pdb|1T34|B Chain B, Rotation Mechanism For Transmembrane Signaling By The
Atrial Natriuretic Peptide Receptor
pdb|3A3K|A Chain A, Reversibly Bound Chloride In The Atrial Natriuretic
Peptide Receptor Hormone-Binding Domain
pdb|3A3K|B Chain B, Reversibly Bound Chloride In The Atrial Natriuretic
Peptide Receptor Hormone-Binding Domain
Length = 435
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 8 VVVLCANPQTVREILLAAEELNMIDSGE-YVFFNIELF--SSMNAASLTPWYVHNDTDVR 64
V+ +C++P R ++L A LN +GE YVFF++++F S +A L P D +
Sbjct: 209 VIYICSSPDAFRNLMLLA--LNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQ 266
Query: 65 NERARKAYTALLTVTARTPNNEAYRNFSSEL 95
+ AR+A+ A +T + P+N Y F +L
Sbjct: 267 DRSARQAFQAAKIITYKEPDNPEYLEFLKQL 297
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella
Tular
pdb|3MSU|B Chain B, Crystal Structure Of Citrate Synthase From Francisella
Tular
Length = 427
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 83 PNNEAYRNFSSELLSAVLPILDHAKVASAKMP 114
P +E ++F E+++ +P+ +H K A A MP
Sbjct: 104 PTDEQVKSFRQEIINK-MPVCEHVKAAIAAMP 134
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 43 LFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTPNNEAYR 89
L+S M + P V D D AR+ AL VTAR +R
Sbjct: 368 LYSCMVGGARQPGLVEQDEDALAALAREELKALAGVTARPSFTRVFR 414
>pdb|4I78|A Chain A, Crystal Structure Of A Subtype H17 Hemagglutinin Homologue
From A/little Yellow-shouldered Bat/guatemala/060/2010
(h17n10)
pdb|4I78|B Chain B, Crystal Structure Of A Subtype H17 Hemagglutinin Homologue
From A/little Yellow-shouldered Bat/guatemala/060/2010
(h17n10)
Length = 328
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 28 LNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNER 67
LN I + FNIE+ + + L W +HN D +R
Sbjct: 150 LNWIQGNSGLPFNIEIKNPTSNPLLLLWGIHNTKDAAQQR 189
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 54 PWYVHNDTDVRNERARKAYTALLTVTARTPNNEAYRNFSSELLS 97
P++ N +R E A T L T+TA+ P+ +N LS
Sbjct: 336 PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLS 379
>pdb|3BZ6|A Chain A, Crystal Structure Of A Conserved Protein Of Unknown
Function From Pseudomonas Syringae Pv. Tomato Str.
Dc3000
Length = 183
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 9 VVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTP 54
++L PQTV E+L + + + E V +E + A+L P
Sbjct: 116 LLLLRGPQTVSELLTRSNRXHDFEDSEQVVHQLERLIARGLATLVP 161
>pdb|3UNB|J Chain J, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|X Chain X, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|LL Chain l, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|ZZ Chain z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|J Chain J, Mouse Constitutive 20s Proteasome
pdb|3UNE|X Chain X, Mouse Constitutive 20s Proteasome
pdb|3UNE|LL Chain l, Mouse Constitutive 20s Proteasome
pdb|3UNE|ZZ Chain z, Mouse Constitutive 20s Proteasome
pdb|3UNF|J Chain J, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|X Chain X, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|J Chain J, Mouse 20s Immunoproteasome
pdb|3UNH|X Chain X, Mouse 20s Immunoproteasome
Length = 201
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 1 MFNFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTP 54
MF S +++LC E + + EY+ N++L+ N L+P
Sbjct: 35 MFKMSEKILLLCV-----------GEAGDTVQFAEYIQKNVQLYKMRNGYELSP 77
>pdb|1IRU|K Chain K, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
pdb|1IRU|Y Chain Y, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
Length = 201
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 1 MFNFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTP 54
MF S +++LC E + + EY+ N++L+ N L+P
Sbjct: 35 MFKMSEKILLLCV-----------GEAGDTVQFAEYIQKNVQLYKMRNGYELSP 77
>pdb|1J9I|A Chain A, Structure Of The Dna Binding Domain Of The Gpnu1 Subunit
Of Lambda Terminase
pdb|1J9I|B Chain B, Structure Of The Dna Binding Domain Of The Gpnu1 Subunit
Of Lambda Terminase
Length = 68
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 48 NAASLTPWYVHNDTDVRNERARK 70
++A++ WY D ++ NE+ R+
Sbjct: 42 DSAAVIKWYAERDAEIENEKLRR 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,050,498
Number of Sequences: 62578
Number of extensions: 99481
Number of successful extensions: 252
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 20
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)