Query psy8573
Match_columns 123
No_of_seqs 104 out of 219
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 22:17:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06386 PBP1_NPR_C_like Ligand 99.5 6.2E-14 1.3E-18 113.7 9.9 109 4-118 193-301 (387)
2 cd06384 PBP1_NPR_B Ligand-bind 99.3 6.6E-12 1.4E-16 101.8 9.7 111 4-116 201-312 (399)
3 cd06369 PBP1_GC_C_enterotoxin_ 99.3 1.1E-12 2.4E-17 107.6 4.8 69 3-90 206-274 (380)
4 cd06385 PBP1_NPR_A Ligand-bind 99.2 1.4E-10 3E-15 94.0 9.0 99 4-106 201-301 (405)
5 cd06371 PBP1_sensory_GC_DEF_li 99.1 4.3E-10 9.3E-15 91.2 9.8 108 5-120 188-300 (382)
6 cd06373 PBP1_NPR_like Ligand b 98.9 6.6E-09 1.4E-13 83.9 9.2 98 4-104 200-297 (396)
7 cd06372 PBP1_GC_G_like Ligand- 98.9 9.1E-09 2E-13 82.9 9.2 90 3-100 194-284 (391)
8 PF01094 ANF_receptor: Recepto 98.7 2.4E-08 5.3E-13 77.4 4.6 83 3-99 177-259 (348)
9 cd06370 PBP1_Speract_GC_like L 98.5 8E-07 1.7E-11 72.3 9.3 94 3-101 195-297 (404)
10 cd06352 PBP1_NPR_GC_like Ligan 98.2 1.4E-05 3E-10 64.0 10.4 93 5-101 194-287 (389)
11 cd06366 PBP1_GABAb_receptor Li 98.1 2.2E-05 4.8E-10 62.0 8.8 89 4-102 191-280 (350)
12 cd06367 PBP1_iGluR_NMDA N-term 96.8 0.0026 5.6E-08 50.7 5.0 42 4-46 193-234 (362)
13 cd06351 PBP1_iGluR_N_LIVBP_lik 96.5 0.0045 9.7E-08 47.7 4.6 39 7-46 188-226 (328)
14 cd06383 PBP1_iGluR_AMPA_Like N 96.5 0.0056 1.2E-07 49.9 5.3 38 7-45 187-224 (368)
15 cd06382 PBP1_iGluR_Kainate N-t 96.5 0.013 2.8E-07 45.9 7.1 82 4-101 180-261 (327)
16 cd06379 PBP1_iGluR_NMDA_NR1 N- 96.5 0.0068 1.5E-07 48.7 5.6 41 4-45 212-252 (377)
17 cd06365 PBP1_Pheromone_recepto 96.4 0.0037 8.1E-08 52.3 4.0 78 3-97 229-306 (469)
18 cd06269 PBP1_glutamate_recepto 96.3 0.0093 2E-07 44.5 5.3 40 5-46 195-234 (298)
19 cd06368 PBP1_iGluR_non_NMDA_li 96.2 0.014 3E-07 45.3 6.2 82 4-101 179-260 (324)
20 cd06362 PBP1_mGluR Ligand bind 95.8 0.014 3.1E-07 47.9 4.7 40 4-45 229-268 (452)
21 cd06378 PBP1_iGluR_NMDA_NR2 N- 95.8 0.02 4.4E-07 46.6 5.5 43 4-47 192-234 (362)
22 cd06374 PBP1_mGluR_groupI Liga 95.8 0.025 5.5E-07 47.1 6.0 76 4-95 244-319 (472)
23 cd06391 PBP1_iGluR_delta_2 N-t 95.7 0.022 4.8E-07 47.0 5.4 41 4-45 198-238 (400)
24 cd06387 PBP1_iGluR_AMPA_GluR3 95.4 0.072 1.6E-06 43.7 7.2 39 4-43 178-216 (372)
25 cd06380 PBP1_iGluR_AMPA N-term 95.1 0.042 9E-07 44.1 5.0 38 4-42 182-219 (382)
26 cd06390 PBP1_iGluR_AMPA_GluR1 94.9 0.11 2.3E-06 42.3 6.9 38 4-42 170-207 (364)
27 cd06375 PBP1_mGluR_groupII Lig 94.7 0.083 1.8E-06 44.2 5.8 75 4-96 231-305 (458)
28 cd06381 PBP1_iGluR_delta_like 93.7 0.33 7.1E-06 39.5 7.3 41 4-45 198-238 (363)
29 cd06392 PBP1_iGluR_delta_1 N-t 93.7 0.14 3E-06 42.6 5.1 39 6-45 200-238 (400)
30 cd06376 PBP1_mGluR_groupIII Li 93.4 0.2 4.3E-06 41.6 5.6 40 4-45 230-269 (463)
31 cd04509 PBP1_ABC_transporter_G 92.9 0.16 3.5E-06 37.7 4.0 65 4-85 190-254 (299)
32 cd06388 PBP1_iGluR_AMPA_GluR4 92.9 0.23 5E-06 40.4 5.2 39 4-43 177-215 (371)
33 cd06393 PBP1_iGluR_Kainate_Glu 92.8 0.24 5.2E-06 40.0 5.2 37 5-42 192-228 (384)
34 cd06389 PBP1_iGluR_AMPA_GluR2 92.8 0.24 5.2E-06 40.1 5.2 39 3-42 174-212 (370)
35 cd06394 PBP1_iGluR_Kainate_KA1 92.4 0.26 5.6E-06 39.9 4.8 39 4-43 185-223 (333)
36 cd06363 PBP1_Taste_receptor Li 91.5 0.39 8.4E-06 39.1 5.0 35 4-41 233-267 (410)
37 cd06361 PBP1_GPC6A_like Ligand 90.7 0.53 1.1E-05 38.7 5.0 37 4-44 233-269 (403)
38 cd06350 PBP1_GPCR_family_C_lik 90.4 0.61 1.3E-05 36.4 5.0 35 4-40 216-250 (348)
39 KOG1056|consensus 89.8 0.96 2.1E-05 41.5 6.3 77 4-96 251-327 (878)
40 cd06364 PBP1_CaSR Ligand-bindi 87.2 0.83 1.8E-05 38.8 4.0 37 4-43 243-279 (510)
41 KOG4440|consensus 75.1 4.6 9.9E-05 36.4 4.2 40 5-45 224-263 (993)
42 cd06342 PBP1_ABC_LIVBP_like Ty 70.3 24 0.00052 27.1 6.9 27 4-30 189-215 (334)
43 cd01391 Periplasmic_Binding_Pr 70.1 9.8 0.00021 27.0 4.4 40 6-47 183-222 (269)
44 cd06338 PBP1_ABC_ligand_bindin 64.9 12 0.00027 29.0 4.4 34 4-39 195-228 (345)
45 KOG1053|consensus 57.6 22 0.00048 33.4 5.1 39 5-44 231-269 (1258)
46 cd06340 PBP1_ABC_ligand_bindin 56.0 21 0.00045 28.1 4.3 34 4-39 198-231 (347)
47 PF10898 DUF2716: Protein of u 55.4 12 0.00025 27.3 2.4 24 32-57 110-133 (143)
48 cd06360 PBP1_alkylbenzenes_lik 52.1 58 0.0013 25.0 6.1 26 5-30 189-214 (336)
49 cd06347 PBP1_ABC_ligand_bindin 51.9 84 0.0018 23.9 7.0 27 4-30 190-216 (334)
50 PF12053 DUF3534: Domain of un 49.3 44 0.00095 24.4 4.6 34 5-39 9-48 (145)
51 cd02148 Nitroreductase_5 Nitro 48.2 25 0.00054 25.5 3.3 10 21-30 124-133 (185)
52 cd06332 PBP1_aromatic_compound 44.3 1.3E+02 0.0028 22.8 7.0 34 4-39 185-218 (333)
53 PF09999 DUF2240: Uncharacteri 42.2 69 0.0015 23.3 4.8 100 13-122 34-135 (144)
54 PF11885 DUF3405: Protein of u 40.3 1.1E+02 0.0023 26.8 6.3 45 5-56 103-156 (496)
55 PF04273 DUF442: Putative phos 38.0 29 0.00062 23.8 2.1 21 19-43 47-67 (110)
56 cd06359 PBP1_Nba_like Type I p 37.8 1.3E+02 0.0028 23.3 6.2 34 4-39 185-218 (333)
57 PRK05365 malonic semialdehyde 37.6 42 0.00091 24.5 3.2 10 21-30 131-140 (195)
58 PF04977 DivIC: Septum formati 35.7 31 0.00068 21.2 1.9 20 23-42 59-79 (80)
59 cd02342 ZZ_UBA_plant Zinc fing 34.9 17 0.00036 21.2 0.5 13 111-123 7-19 (43)
60 COG3602 Uncharacterized protei 33.1 39 0.00084 24.0 2.2 28 14-43 2-30 (134)
61 PF07894 DUF1669: Protein of u 32.8 84 0.0018 25.4 4.3 36 7-47 148-187 (284)
62 PF12646 DUF3783: Domain of un 32.5 80 0.0017 19.0 3.3 24 7-30 2-26 (58)
63 PF10330 Stb3: Putative Sin3 b 32.0 83 0.0018 21.3 3.5 26 15-41 42-67 (92)
64 cd06330 PBP1_Arsenic_SBP_like 31.8 66 0.0014 24.9 3.6 37 4-42 194-230 (346)
65 smart00450 RHOD Rhodanese Homo 31.6 1.2E+02 0.0026 18.2 4.4 27 4-30 55-81 (100)
66 TIGR02981 phageshock_pspE phag 31.6 92 0.002 20.6 3.8 25 6-30 59-83 (101)
67 PF09391 DUF2000: Protein of u 31.3 94 0.002 22.0 4.0 36 6-45 54-89 (133)
68 PF00356 LacI: Bacterial regul 30.4 60 0.0013 18.8 2.4 18 14-31 27-44 (46)
69 cd06185 PDR_like Phthalate dio 30.4 76 0.0016 23.0 3.5 25 6-30 176-200 (211)
70 cd06194 FNR_N-term_Iron_sulfur 28.7 77 0.0017 23.2 3.3 25 6-30 187-211 (222)
71 PRK10926 ferredoxin-NADP reduc 28.2 1.3E+02 0.0029 22.8 4.7 22 6-27 206-227 (248)
72 cd06348 PBP1_ABC_ligand_bindin 28.0 71 0.0015 24.8 3.2 27 4-30 191-217 (344)
73 cd06346 PBP1_ABC_ligand_bindin 27.8 74 0.0016 24.5 3.2 27 4-30 191-217 (312)
74 PF04628 Sedlin_N: Sedlin, N-t 27.5 98 0.0021 21.5 3.5 25 4-28 71-101 (132)
75 cd06195 FNR1 Ferredoxin-NADP+ 27.4 1.2E+02 0.0027 22.5 4.3 24 7-30 202-225 (241)
76 PRK08345 cytochrome-c3 hydroge 27.3 94 0.002 24.3 3.7 37 7-45 213-249 (289)
77 KOG3282|consensus 27.1 1.5E+02 0.0032 22.6 4.6 36 4-44 123-158 (190)
78 cd02137 Nitroreductase_1 Nitro 26.9 1.2E+02 0.0026 20.8 3.9 23 8-30 73-98 (148)
79 cd02344 ZZ_HERC2 Zinc finger, 26.4 31 0.00068 20.1 0.7 13 111-123 7-19 (45)
80 cd01444 GlpE_ST GlpE sulfurtra 26.4 1E+02 0.0022 19.1 3.2 27 4-30 55-81 (96)
81 COG4954 Uncharacterized protei 26.4 98 0.0021 21.8 3.2 30 7-37 57-86 (135)
82 cd06327 PBP1_SBP_like_1 Peripl 26.4 1.2E+02 0.0026 23.5 4.2 33 4-37 189-221 (334)
83 cd06377 PBP1_iGluR_NMDA_NR3 N- 26.0 1E+02 0.0023 25.7 3.9 30 6-42 212-241 (382)
84 PF03444 HrcA_DNA-bdg: Winged 25.7 74 0.0016 20.8 2.4 19 13-31 35-53 (78)
85 PF02302 PTS_IIB: PTS system, 25.4 1.3E+02 0.0028 18.7 3.6 24 7-30 1-29 (90)
86 cd02140 Nitroreductase_4 Nitro 25.1 49 0.0011 24.0 1.7 13 18-30 127-139 (192)
87 PF09263 PEX-2N: Peroxisome bi 25.0 60 0.0013 21.7 1.9 16 24-40 68-83 (87)
88 cd06336 PBP1_ABC_ligand_bindin 24.9 1.2E+02 0.0025 23.8 3.9 31 4-36 192-223 (347)
89 cd02639 R3H_RRM R3H domain of 24.4 1.2E+02 0.0026 18.7 3.0 29 2-30 11-43 (60)
90 COG4837 Uncharacterized protei 24.2 1.1E+02 0.0023 21.0 3.0 29 16-45 26-54 (106)
91 cd06212 monooxygenase_like The 23.8 1.2E+02 0.0026 22.4 3.6 25 6-30 197-221 (232)
92 cd01523 RHOD_Lact_B Member of 23.3 1.2E+02 0.0025 19.3 3.1 26 5-30 61-86 (100)
93 PRK13877 conjugal transfer rel 23.1 76 0.0016 22.0 2.2 32 5-37 9-40 (114)
94 cd06418 GH25_BacA-like BacA is 23.0 1.5E+02 0.0033 22.4 4.1 28 17-45 90-117 (212)
95 COG0595 mRNA degradation ribon 22.9 1E+02 0.0022 27.1 3.4 26 4-29 225-252 (555)
96 PF04967 HTH_10: HTH DNA bindi 22.9 84 0.0018 18.8 2.1 15 16-30 3-17 (53)
97 PF08924 DUF1906: Domain of un 22.6 1.4E+02 0.003 21.0 3.6 25 17-42 78-102 (136)
98 cd06331 PBP1_AmiC_like Type I 22.2 2.7E+02 0.0059 21.4 5.5 27 4-30 186-212 (333)
99 cd06268 PBP1_ABC_transporter_L 22.0 1.1E+02 0.0024 22.2 3.1 26 5-30 190-215 (298)
100 cd00158 RHOD Rhodanese Homolog 21.7 1.6E+02 0.0035 17.5 3.4 27 4-30 49-75 (89)
101 cd01524 RHOD_Pyr_redox Member 21.6 1.6E+02 0.0036 18.2 3.5 26 4-29 50-75 (90)
102 cd06214 PA_degradation_oxidore 21.3 1.4E+02 0.0031 22.0 3.6 25 6-30 206-230 (241)
103 PRK10287 thiosulfate:cyanide s 21.1 1.7E+02 0.0036 19.5 3.6 25 6-30 61-85 (104)
104 TIGR02911 sulfite_red_B sulfit 20.3 1.9E+02 0.0041 22.2 4.2 36 7-44 191-226 (261)
105 COG0143 MetG Methionyl-tRNA sy 20.2 29 0.00063 30.5 -0.4 29 8-37 45-73 (558)
106 cd01544 PBP1_GalR Ligand-bindi 20.2 2.9E+02 0.0062 20.4 5.1 36 8-43 181-216 (270)
No 1
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=99.52 E-value=6.2e-14 Score=113.66 Aligned_cols=109 Identities=32% Similarity=0.477 Sum_probs=84.8
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTP 83 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~p 83 (123)
..+||||+|++.+..|.||.+|+++|| ++++||||.+|++.+... ++.+|..++ ..|..++.|++++..|+...+
T Consensus 193 ~~~rvii~~~~~~~~~~ll~~A~~~gm-~~~~yv~i~~d~~~~~~~-~~~~w~~~~---~~~~~~~~a~~~~~~v~~~~~ 267 (387)
T cd06386 193 ASERVVIMCAGADTIRSIMLAAHRRGL-TSGDYIFFNIELFNSSSY-GDGSWKRGD---KHDFEAKQAYSSLNTVTLLRT 267 (387)
T ss_pred hcCcEEEEecCHHHHHHHHHHHHHcCC-CCCCEEEEEEeccccccc-CCCCCccCC---CcCHHHHHHHHhheEEeccCC
Confidence 445999999999999999999999999 689999999998863322 346797422 245567789999999998899
Q ss_pred CChhHHHHHHHHHHhhccccCCCCCcccccccccc
Q psy8573 84 NNEAYRNFSSELLSAVLPILDHAKVASAKMPLLQN 118 (123)
Q Consensus 84 ~~~~y~~F~~~v~~~~~~~~~~~~~~~~~~p~~~~ 118 (123)
.+++|++|.++++++++.+ +..-+..+++++.+.
T Consensus 268 ~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~aa~ 301 (387)
T cd06386 268 VKPEFEKFSMEVKSSVEKA-GDLNDCDYVNMFVEG 301 (387)
T ss_pred CChHHHHHHHHHHHHHHhC-CCCcccccchHHHHH
Confidence 8999999999999999876 322223455555443
No 2
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=99.34 E-value=6.6e-12 Score=101.82 Aligned_cols=111 Identities=22% Similarity=0.335 Sum_probs=87.0
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCC-CCchhhHHHHHHHHHhhhhcccC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHN-DTDVRNERARKAYTALLTVTART 82 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~-~~~~~d~~ar~Ay~svl~It~~~ 82 (123)
..+||||+|++.++.+.||.+|+++|| +.++||||.+|.+...+. ...+|...+ .++..++.+++|++.+++++...
T Consensus 201 ~~~~vIi~~~~~~~~~~i~~qa~~~g~-~~~~y~~i~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~ 278 (399)
T cd06384 201 QNGRIVYICGPLETFLEIMLQAQREGL-TPGDYVFFYLDVFGESLR-VKSPRESYKQMNHSSWTVLKEAFKSVFVITYRE 278 (399)
T ss_pred hcccEEEEeCCchHHHHHHHHHHHcCC-CCCcEEEEEehhcccccc-cCCCCccccCCCCcccHHHHHHHhheEEeecCC
Confidence 468999999999999999999999999 799999999998765432 224676321 12223467888999999999989
Q ss_pred CCChhHHHHHHHHHHhhccccCCCCCcccccccc
Q psy8573 83 PNNEAYRNFSSELLSAVLPILDHAKVASAKMPLL 116 (123)
Q Consensus 83 p~~~~y~~F~~~v~~~~~~~~~~~~~~~~~~p~~ 116 (123)
|.++++++|.++++++++++++....|+.+.+..
T Consensus 279 ~~~~~~~~F~~~~~~~~~~~~~~~~~p~~~~~~a 312 (399)
T cd06384 279 PENPEYKEFQRELHARAKEDFGVELEPSLMNFIA 312 (399)
T ss_pred CCCchHHHHHHHHHHHHhhhcCCCcCcchHhhhh
Confidence 9889999999999998888887666665554433
No 3
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=99.33 E-value=1.1e-12 Score=107.59 Aligned_cols=69 Identities=17% Similarity=0.314 Sum_probs=57.6
Q ss_pred cccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccC
Q psy8573 3 NFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTART 82 (123)
Q Consensus 3 ~~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~ 82 (123)
+..+||||||++++++|+||++ |+ ..||||||.||+|+.++ |. |..+++|+++|++||+..
T Consensus 206 ~~~sRIiImCG~p~~ir~lm~~----~~-~~gDYVf~~IDlF~~sy------~~--------d~~a~~amqsVLvIT~~~ 266 (380)
T cd06369 206 NRKSNVIIMCGTPEDIVNLKGD----RA-VAEDIVIILIDLFNDVY------YE--------NTTSPPYMRNVLVLTLPP 266 (380)
T ss_pred ccCccEEEEeCCHHHHHHHHhc----Cc-cCCCEEEEEEecccchh------cc--------CcchHHHHhceEEEecCC
Confidence 4679999999999999999997 66 57999999999997443 21 125788999999999999
Q ss_pred CCChhHHH
Q psy8573 83 PNNEAYRN 90 (123)
Q Consensus 83 p~~~~y~~ 90 (123)
|++++|.+
T Consensus 267 p~~~~~~~ 274 (380)
T cd06369 267 RNSTNNSS 274 (380)
T ss_pred CCCccccc
Confidence 98887755
No 4
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=99.17 E-value=1.4e-10 Score=93.97 Aligned_cols=99 Identities=27% Similarity=0.554 Sum_probs=79.9
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCC--CCCCcccCCCCchhhHHHHHHHHHhhhhccc
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAA--SLTPWYVHNDTDVRNERARKAYTALLTVTAR 81 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~--~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~ 81 (123)
+.+||||+|++.+..|.+|.+|+++|| +.++|+||..|.+..++.. ...+|... + ..+..+.+|++.+++++..
T Consensus 201 ~~~~iii~~~~~~~~~~i~~~a~~~g~-~~~~y~~i~~~~~~~~~~~~~~~~~w~~~-~--~~~~~~~~a~~~v~~~~~~ 276 (405)
T cd06385 201 QKGRVIYVCCSPDIFRRLMLQFWREGL-PSEDYVFFYIDLFGASLQGPDPKRPWYRG-D--ADDAAAREAFQSVKILTYK 276 (405)
T ss_pred hcceEEEEeCCHHHHHHHHHHHHHcCC-CCCcEEEEEeecchhhccCCCCCCCCCCC-C--cccHHHHHhhheeEEEeCC
Confidence 457999999999999999999999999 7899999999987655331 23578742 2 2345788999999998888
Q ss_pred CCCChhHHHHHHHHHHhhccccCCC
Q psy8573 82 TPNNEAYRNFSSELLSAVLPILDHA 106 (123)
Q Consensus 82 ~p~~~~y~~F~~~v~~~~~~~~~~~ 106 (123)
.|.+++|++|.+++++++..+++..
T Consensus 277 ~~~~~~~~~f~~~~~~~~~~~~~~~ 301 (405)
T cd06385 277 EPQNPEYKEFLSDLKTDAKEMFNFT 301 (405)
T ss_pred CCCChhHHHHHHHHHHHhhccCCCc
Confidence 8888999999999998877677643
No 5
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=99.12 E-value=4.3e-10 Score=91.19 Aligned_cols=108 Identities=24% Similarity=0.345 Sum_probs=77.1
Q ss_pred cceEEEEEcCh-----HHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhc
Q psy8573 5 SVAVVVLCANP-----QTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVT 79 (123)
Q Consensus 5 ~~RVVilC~~~-----~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It 79 (123)
++||||+|++. +..+.||.+|+++|| ++++|+||..|....+..+....|. .+ ..|..+++|++++++++
T Consensus 188 ~~~viv~~~~~~~~~~~~~~~i~~qa~~~Gm-~~~~y~~i~~d~~~~~~~~~~~~~~--~~--~~~~~~~~a~~~~~~~~ 262 (382)
T cd06371 188 RVRVVIMCMHSVLIGGEEQRLLLETALEMGM-TDGRYVFIPYDTLLYSLPYRNVSYP--AL--RNNSKLRRAYDAVLTIT 262 (382)
T ss_pred CcEEEEEEeeccccCcHHHHHHHHHHHHcCC-cCCcEEEEEeccccccCCCCCcccc--CC--CCCHHHHHHhHhhEEEE
Confidence 36999999986 778999999999999 7899999999954333211111122 11 23457889999999998
Q ss_pred ccCCCChhHHHHHHHHHHhhccccCCCCCcccccccccccc
Q psy8573 80 ARTPNNEAYRNFSSELLSAVLPILDHAKVASAKMPLLQNRY 120 (123)
Q Consensus 80 ~~~p~~~~y~~F~~~v~~~~~~~~~~~~~~~~~~p~~~~~~ 120 (123)
...+..+++++|.+... ....++..+|++++|+.+.-|
T Consensus 263 ~~~~~~~~~~~f~~~~~---~~~~~~~~~~~~~~~~~~~~Y 300 (382)
T cd06371 263 MDSGEQSFYEAFRAAQE---RGEIPSDLEPEQVSPLFGTIY 300 (382)
T ss_pred ecCCCCcHHHHHHHHHh---cCCCCCCCCccccchhHHHHH
Confidence 87777778888887522 234566677888888766444
No 6
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=98.92 E-value=6.6e-09 Score=83.88 Aligned_cols=98 Identities=45% Similarity=0.754 Sum_probs=76.6
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTP 83 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~p 83 (123)
..+||||+|++.++.+.+|.+|+++|| +.++||||.++++..++. +...|.. ......++.+.++++.+++++...+
T Consensus 200 ~~~~vii~~~~~~~~~~~~~qa~~~g~-~~~~yv~i~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~ 276 (396)
T cd06373 200 KKGRVVIMCASPDTVREIMLAAHRLGL-TSGEYVFFNIDLFGSSLY-GGGPWWW-ERGDEDDEKAKEAYQALMTITLREP 276 (396)
T ss_pred hcCcEEEEecCHHHHHHHHHHHHHcCC-CCCcEEEEEEccchhhhc-cCCCCcC-CCCCcccHHHHHHHHHheEEecCCC
Confidence 345999999999999999999999999 689999999998865543 2346641 0111234567788999999998888
Q ss_pred CChhHHHHHHHHHHhhccccC
Q psy8573 84 NNEAYRNFSSELLSAVLPILD 104 (123)
Q Consensus 84 ~~~~y~~F~~~v~~~~~~~~~ 104 (123)
.++.+.+|.++.+++...+++
T Consensus 277 ~~~~~~~F~~~~~~~~~~~~~ 297 (396)
T cd06373 277 DNPEYKEFSLEVKERAKKKFN 297 (396)
T ss_pred CChHHHHHHHHHHHHhhhcCC
Confidence 889999999999987666665
No 7
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=98.90 E-value=9.1e-09 Score=82.93 Aligned_cols=90 Identities=21% Similarity=0.370 Sum_probs=68.9
Q ss_pred cccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccC
Q psy8573 3 NFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTART 82 (123)
Q Consensus 3 ~~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~ 82 (123)
++.+||||+|++.++.+.+|.+|+++|| +.++|+||.++.+.. ..|.. ...+..+..+.++++.+++++...
T Consensus 194 ~~~~~vii~~~~~~~~~~i~~~a~~~g~-~~~~y~~i~~~~~~~------~~w~~-~~~~~~~~~~~~~~~~~~~i~~~~ 265 (391)
T cd06372 194 SSVARVIILICSSEDAKAILQAAEKLGL-MKGKFVFFLLQQFED------NFWKE-VLTDDQVQHLPKVYESVFLIAPSS 265 (391)
T ss_pred hccceEEEEEcChHHHHHHHHHHHHcCC-CCCCEEEEEehhhcC------ccccc-cCCCcchHHHHHHHhhEEEEecCC
Confidence 4678999999999999999999999999 688999999876542 24643 222223446778899999888876
Q ss_pred CC-ChhHHHHHHHHHHhhc
Q psy8573 83 PN-NEAYRNFSSELLSAVL 100 (123)
Q Consensus 83 p~-~~~y~~F~~~v~~~~~ 100 (123)
+. .+.+.+|.+.++++..
T Consensus 266 ~~~~~~~~~f~~~~~~~~~ 284 (391)
T cd06372 266 YGGYSGGYEFRKQVYQKLK 284 (391)
T ss_pred CCCCcchhHHHHHHHHHHh
Confidence 53 3667889988887765
No 8
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=98.67 E-value=2.4e-08 Score=77.38 Aligned_cols=83 Identities=33% Similarity=0.561 Sum_probs=70.0
Q ss_pred cccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccC
Q psy8573 3 NFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTART 82 (123)
Q Consensus 3 ~~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~ 82 (123)
++.+||||+|+++...|.+|.+|+++|| .+++|+||..+..... .|. .+..+.+++..++.+++..
T Consensus 177 ~~~~rvvil~~~~~~~~~~l~~a~~~~~-~~~~~~~i~~~~~~~~------~~~-------~~~~~~~~~~~~~~~~~~~ 242 (348)
T PF01094_consen 177 KSGARVVILCSSPEDARQFLEAAYELGM-TSGDYVWILTDLDNSS------FWQ-------NNEDFREAFQGVLGFTPPP 242 (348)
T ss_dssp TTTTSEEEEESBHHHHHHHHHHHHHTTT-SSTTSEEEEETTTTTT------HTS-------THCHHHCCHTTEEEEEEST
T ss_pred cccceeeeeecccccccccccchhhhhc-cccceeEEeecccccc------ccc-------ccccccccccceeeeeeec
Confidence 4789999999999999999999999999 7999999999976522 121 2336788899999999999
Q ss_pred CCChhHHHHHHHHHHhh
Q psy8573 83 PNNEAYRNFSSELLSAV 99 (123)
Q Consensus 83 p~~~~y~~F~~~v~~~~ 99 (123)
+..+.+.+|.+..+...
T Consensus 243 ~~~~~~~~f~~~~~~~~ 259 (348)
T PF01094_consen 243 PSSPEFEDFMKKWKESN 259 (348)
T ss_dssp TTSHHHHHHHHHHHTTT
T ss_pred ccccchhhhhcccChhh
Confidence 99999999999998543
No 9
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=98.50 E-value=8e-07 Score=72.33 Aligned_cols=94 Identities=15% Similarity=0.245 Sum_probs=68.4
Q ss_pred cccceEEEEEcChHHHHHHHHHHHHcCCCC-CCcEEEEEeecccccCCC-C-------CCCcccCCCCchhhHHHHHHHH
Q psy8573 3 NFSVAVVVLCANPQTVREILLAAEELNMID-SGEYVFFNIELFSSMNAA-S-------LTPWYVHNDTDVRNERARKAYT 73 (123)
Q Consensus 3 ~~~~RVVilC~~~~~~R~lmlaA~~~Gm~~-~geYVFi~id~~~~s~~~-~-------~~~W~~~~~~~~~d~~ar~Ay~ 73 (123)
+..+||||+|++.++.+.||.+|+++|| . +|+|+||..++...+... . ...|.. +......+.+|++
T Consensus 195 ~~~~~~~v~~~~~~~~~~~l~qa~~~g~-~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~ 270 (404)
T cd06370 195 KETTRIYVFIGEANELRQFLMSMLDEGL-LESGDYMVLGVDIEYYDRDSQDYYSLHRGFQSREY---NRSDDEKALEAMK 270 (404)
T ss_pred cCCCEEEEEEcCHHHHHHHHHHHHHcCC-CCCCcEEEEEEchhhccccchhhhhhhhhhccccc---cccccHHHHHHhH
Confidence 3457999999988889999999999999 6 799999998864322110 0 023432 1123457888999
Q ss_pred HhhhhcccCCCChhHHHHHHHHHHhhcc
Q psy8573 74 ALLTVTARTPNNEAYRNFSSELLSAVLP 101 (123)
Q Consensus 74 svl~It~~~p~~~~y~~F~~~v~~~~~~ 101 (123)
.+++++...+ ++.+.+|.+.++++.+.
T Consensus 271 ~~~~~~~~~~-~~~~~~f~~~~~~~~~~ 297 (404)
T cd06370 271 SVLIIVPTPV-SPDYDSFSIFVRKYNLE 297 (404)
T ss_pred heEEEecCCC-CchHHHHHHHHHHhccC
Confidence 9998887665 78889999999876543
No 10
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=98.23 E-value=1.4e-05 Score=63.97 Aligned_cols=93 Identities=38% Similarity=0.685 Sum_probs=70.9
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCC-CCCcccCCCCchhhHHHHHHHHHhhhhcccCC
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAAS-LTPWYVHNDTDVRNERARKAYTALLTVTARTP 83 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~-~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~p 83 (123)
.+||||+|+++++.+.++.+|.++|| ..++|+||..+.+...+... ..+|.... ..++.+..++..++.++...+
T Consensus 194 ~~~vii~~~~~~~~~~~l~q~~~~g~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~ 269 (389)
T cd06352 194 RSRIIIMCGSSEDVRELLLAAHDLGL-TSGDYVFILIDLFNYSLPYQNSYPWERGD---GDDEKAKEAYDAVLTITLRPP 269 (389)
T ss_pred cceEEEEECCHHHHHHHHHHHHHcCC-CCCcEEEEEEehhccccccCCCCCcccCC---cccHHHHHHHHhheEEEecCC
Confidence 34899999999999999999999998 68899999998876543211 11365211 234567788888888888777
Q ss_pred CChhHHHHHHHHHHhhcc
Q psy8573 84 NNEAYRNFSSELLSAVLP 101 (123)
Q Consensus 84 ~~~~y~~F~~~v~~~~~~ 101 (123)
.++.+++|.++.+++..+
T Consensus 270 ~~~~~~~f~~~~~~~~~~ 287 (389)
T cd06352 270 DNPEYEEFSEEVKEAAKR 287 (389)
T ss_pred CCchHHHHHHHHHHHHhc
Confidence 889999999999877643
No 11
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=98.09 E-value=2.2e-05 Score=61.96 Aligned_cols=89 Identities=21% Similarity=0.352 Sum_probs=68.3
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTP 83 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~p 83 (123)
+.++|||+|+++.+.+.||.+|.++|| +.++|+||..+.+. ..|..... .-...+.++++.++.++...|
T Consensus 191 ~~~dvvi~~~~~~~~~~~~~~a~~~g~-~~~~~~~i~~~~~~-------~~~~~~~~--~~~~~~~~~~~gv~~~~~~~~ 260 (350)
T cd06366 191 KDSRVIVVHFSPDLARRVFCEAYKLGM-MGKGYVWILTDWLS-------SNWWSSSD--CTDEEMLEAMQGVIGVRSYVP 260 (350)
T ss_pred CCCeEEEEECChHHHHHHHHHHHHcCC-cCCCEEEEECcchh-------hhhccCCC--CChHHHHHhhceEEEEeeccc
Confidence 568999999999999999999999998 67789999887543 14531001 123356677888888887777
Q ss_pred C-ChhHHHHHHHHHHhhccc
Q psy8573 84 N-NEAYRNFSSELLSAVLPI 102 (123)
Q Consensus 84 ~-~~~y~~F~~~v~~~~~~~ 102 (123)
. ++.+++|.++.+++...+
T Consensus 261 ~~~~~~~~f~~~~~~~~~~~ 280 (350)
T cd06366 261 NSSMTLQEFTSRWRKRFGNE 280 (350)
T ss_pred ccCccHHHHHHHHHHHhccc
Confidence 7 888999999999887654
No 12
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=96.76 E-value=0.0026 Score=50.68 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=37.8
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccc
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSS 46 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~ 46 (123)
..+||||+.|+.++.+.||.+|.++|| +..+|+||..|....
T Consensus 193 ~~~~vivl~~~~~~~~~il~~a~~~g~-~~~~~~wI~~~~~~~ 234 (362)
T cd06367 193 LESRVILLYCSKEEAERIFEAAASLGL-TGPGYVWIVGELALG 234 (362)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCC-CCCCcEEEECccccc
Confidence 467899999999999999999999999 678899999998764
No 13
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=96.50 E-value=0.0045 Score=47.66 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=34.6
Q ss_pred eEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccc
Q psy8573 7 AVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSS 46 (123)
Q Consensus 7 RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~ 46 (123)
|||++|++.+..+.++.+|.++|| .+.+|+||..+....
T Consensus 188 ~vil~~~~~~~~~~~l~~a~~~gm-~~~~~~~i~~~~~~~ 226 (328)
T cd06351 188 RIILDCSSEEEAKEILEQAVELGM-MGYGYHWILTNLDLS 226 (328)
T ss_pred eEEEECCcHHHHHHHHHHHHHhcc-ccCCcEEEEecCCcc
Confidence 888888887889999999999999 688999999997653
No 14
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=96.49 E-value=0.0056 Score=49.93 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=34.2
Q ss_pred eEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 7 AVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 7 RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
||||.|.+++..+.||.+|.++|| ++..|+||..++..
T Consensus 187 rIIi~~s~~~~~~~il~qA~~lgm-~~~~y~wilt~ld~ 224 (368)
T cd06383 187 NIFILGSTEEIIRYVLDQALAEGF-MGRKYAWFLGNPDL 224 (368)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCC-cCCceEEEEcCCCc
Confidence 899999988899999999999999 68899999988753
No 15
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=96.47 E-value=0.013 Score=45.89 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=54.3
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTP 83 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~p 83 (123)
+.+++||+++++++.+.|+.+|+++|| +...|+++....-.... ....+.. . -..+...++..+
T Consensus 180 ~~~d~vv~~~~~~~~~~~~~qa~~~g~-~~~~~~~i~~~~~~~~~--~l~~~~~--~-----------~~~~~~~~~~~~ 243 (327)
T cd06382 180 SGDNRIIIDCSADILIELLKQAQQVGM-MSEYYHYIITNLDLHTL--DLEDYRY--S-----------GVNITGFRLVDP 243 (327)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHhCc-cccceEEEEecCCcccc--chhhhcc--C-----------ceeEEEEEEecC
Confidence 457899999999999999999999998 56678888755322110 0011110 0 001233445566
Q ss_pred CChhHHHHHHHHHHhhcc
Q psy8573 84 NNEAYRNFSSELLSAVLP 101 (123)
Q Consensus 84 ~~~~y~~F~~~v~~~~~~ 101 (123)
+++++++|.++-+++...
T Consensus 244 ~~~~~~~f~~~~~~~~~~ 261 (327)
T cd06382 244 DSPEVKEVIRSLELSWDE 261 (327)
T ss_pred CchhHHHHHHHHHhhccc
Confidence 788999999999877754
No 16
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=96.45 E-value=0.0068 Score=48.67 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=36.8
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
+.+||||++++.++.+.++.+|.++|| +.++|+||.-|...
T Consensus 212 ~~~~vIvl~~~~~~~~~l~~qa~~~g~-~~~~~~wi~t~~~~ 252 (377)
T cd06379 212 LTSRVILLSASEDDAAVIYRNAGMLNM-TGEGYVWIVSEQAG 252 (377)
T ss_pred cCCeEEEEEcCHHHHHHHHHHHHHcCC-CCCCEEEEEecccc
Confidence 478999999999999999999999998 67789999998753
No 17
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=96.41 E-value=0.0037 Score=52.29 Aligned_cols=78 Identities=10% Similarity=0.241 Sum_probs=57.0
Q ss_pred cccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccC
Q psy8573 3 NFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTART 82 (123)
Q Consensus 3 ~~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~ 82 (123)
++.+||||+|++.+..+.+|.+|.++++ + .+++|--| .|..... ....+.++++.++.++...
T Consensus 229 ~~~arvIvl~~~~~~~~~l~~~~~~~~~-~--~~~wi~s~-----------~w~~~~~---~~~~~~~~~~G~lg~~~~~ 291 (469)
T cd06365 229 TSSAKVIIIYGDTDSLLEVSFRLWQYLL-I--GKVWITTS-----------QWDVTTS---PKDFTLNSFHGTLIFSHHH 291 (469)
T ss_pred cCCCeEEEEEcCcHHHHHHHHHHHHhcc-C--ceEEEeec-----------ccccccc---ccccccceeeEEEEEEecc
Confidence 3678999999999899999888888775 3 37777433 2532111 1123556788899999999
Q ss_pred CCChhHHHHHHHHHH
Q psy8573 83 PNNEAYRNFSSELLS 97 (123)
Q Consensus 83 p~~~~y~~F~~~v~~ 97 (123)
+..+.|++|.+++.-
T Consensus 292 ~~~~~f~~fl~~l~~ 306 (469)
T cd06365 292 SEIPGFKDFLQTVNP 306 (469)
T ss_pred CcCcchHHHhhccCc
Confidence 888999999988863
No 18
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=96.31 E-value=0.0093 Score=44.54 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=35.6
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccc
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSS 46 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~ 46 (123)
..||||+|+.+++.+.++.+|+++|| . ++|+||..+....
T Consensus 195 ~~~viv~~~~~~~~~~~l~~a~~~g~-~-~~~~~i~~~~~~~ 234 (298)
T cd06269 195 TARVIVVFSSEEDALRLLEEAVELGM-M-TGYHWIITDLWLT 234 (298)
T ss_pred CCcEEEEEechHHHHHHHHHHHHcCC-C-CCeEEEEEChhhc
Confidence 45999999999999999999999999 5 8999999997653
No 19
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=96.25 E-value=0.014 Score=45.34 Aligned_cols=82 Identities=17% Similarity=0.125 Sum_probs=52.7
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTP 83 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~p 83 (123)
..+++||+++++++.+.||.+|+++|| ....|++|..+.-... . ++ . ....+...+.......+
T Consensus 179 ~~~d~Vi~~~~~~~~~~i~~qa~~~g~-~~~~~~~i~~~~~~~~------~----~~---~--~~~~~~~~~~~~~~~~~ 242 (324)
T cd06368 179 EKERRIILDCSPERLKEFLEQAVEVGM-MSEYYHYILTNLDFHT------L----DL---E--LFRYGGVNITGFRLVDP 242 (324)
T ss_pred ccCceEEEECCHHHHHHHHHHHHHhcc-ccCCcEEEEccCCccc------c----ch---h--hhhcCCceEEEEEEecC
Confidence 456888999999999999999999998 6789999986642211 0 00 0 01101111222223345
Q ss_pred CChhHHHHHHHHHHhhcc
Q psy8573 84 NNEAYRNFSSELLSAVLP 101 (123)
Q Consensus 84 ~~~~y~~F~~~v~~~~~~ 101 (123)
.++.+++|.++-+++...
T Consensus 243 ~~~~~~~f~~~~~~~~~~ 260 (324)
T cd06368 243 DNPEVQKFIQRWERSDHR 260 (324)
T ss_pred CChHHHHHHHHHHhcccc
Confidence 678899999988866544
No 20
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=95.83 E-value=0.014 Score=47.93 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=34.8
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
+.+||||++++.++.+.+|.+|+++|| + |+|+||..|.+.
T Consensus 229 ~~a~viil~~~~~~~~~~~~~a~~~g~-~-~~~~~i~~~~~~ 268 (452)
T cd06362 229 PNARVVVLFCREDDIRGLLAAAKRLNA-E-GHFQWIASDGWG 268 (452)
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHcCC-c-CceEEEEecccc
Confidence 358999999999999999999999998 4 889999877654
No 21
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=95.81 E-value=0.02 Score=46.59 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=37.1
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccccc
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSM 47 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s 47 (123)
+.+||||+=|+.+..+.|+.+|.++|| +...|+||.-+.....
T Consensus 192 ~~arViVl~~s~~~a~~if~~A~~~gm-~g~~yvWI~t~~~~~~ 234 (362)
T cd06378 192 LESQVILLYCSKEEAEYIFRAARSAGL-TGPGYVWIVPSLVLGN 234 (362)
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCC-cCCCeEEEecccccCC
Confidence 568999999999999999999999999 5667999999975543
No 22
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=95.78 E-value=0.025 Score=47.10 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=49.5
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTP 83 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~p 83 (123)
..+|||++.+.....+.++.+|+++|| +++|+||.-|- |...+.. .+ .+.++...++.|+...+
T Consensus 244 ~da~vvv~~~~~~~~~~~l~~a~~~g~--~~~~~wi~s~~-----------~~~~~~~--~~-~~~~~~~G~l~~~~~~~ 307 (472)
T cd06374 244 PKARVVVCFCEGMTVRGLLMAMRRLGV--GGEFQLIGSDG-----------WADRDDV--VE-GYEEEAEGGITIKLQSP 307 (472)
T ss_pred CCcEEEEEEechHHHHHHHHHHHHhcC--CCceEEEEecc-----------cccchHh--hh-cchhhhheeEEEEecCC
Confidence 357888776777789999999999998 48899997663 3210000 00 23344556667777666
Q ss_pred CChhHHHHHHHH
Q psy8573 84 NNEAYRNFSSEL 95 (123)
Q Consensus 84 ~~~~y~~F~~~v 95 (123)
.-+.+++|.+.+
T Consensus 308 ~~~~F~~~l~~l 319 (472)
T cd06374 308 EVPSFDDYYLKL 319 (472)
T ss_pred CCccHHHHHHhC
Confidence 666666666554
No 23
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=95.72 E-value=0.022 Score=47.01 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=36.4
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
+..||||+=|+++..+.+|.+|.++|| ....|+||.-+...
T Consensus 198 ~~~rviVl~~~~~~~~~ll~~a~~~gm-~~~~y~wi~t~~~~ 238 (400)
T cd06391 198 DTLRRAILVMNPATAKSFITEVVETNL-VAFDCHWIIINEEI 238 (400)
T ss_pred ccccEEEEECCcHHHHHHHHHHHHcCC-CCCCeEEEEeCccc
Confidence 457899999999999999999999999 68899999998743
No 24
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=95.37 E-value=0.072 Score=43.72 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=34.0
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeec
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIEL 43 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~ 43 (123)
+.-|+||+=|+++....|+.+|.+.|| .+..|+||.-++
T Consensus 178 ~~~r~iIld~s~~~~~~il~~a~e~gM-~~~~y~~ilt~l 216 (372)
T cd06387 178 RQEKRYLIDCEVERINTILEQVVILGK-HSRGYHYMLANL 216 (372)
T ss_pred ccceEEEEECCHHHHHHHHHHHHHcCc-cccceEEEEecC
Confidence 456788888899999999999999999 689999999874
No 25
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=95.11 E-value=0.042 Score=44.05 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=33.4
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEee
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIE 42 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id 42 (123)
+..|+||+.++.++.+.++.+|.++|| ...+|+||...
T Consensus 182 ~~~~~iil~~~~~~~~~i~~qa~~~gm-~~~~y~~i~~~ 219 (382)
T cd06380 182 RKEKRIVLDCESERLNKILEQIVDVGK-NRKGYHYILAN 219 (382)
T ss_pred ccceEEEEECCHHHHHHHHHHHHHhhh-cccceEEEEcc
Confidence 356899999999999999999999999 67899998764
No 26
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=94.90 E-value=0.11 Score=42.35 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=32.4
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEee
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIE 42 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id 42 (123)
+..|+||+=|+++....+|.+|.+.+|+ ...|+||.-+
T Consensus 170 ~~~rvIVl~~~~~~~~~~L~~a~~~~~~-~~gy~wI~t~ 207 (364)
T cd06390 170 KKERLIVVDCESERLNAILNQIIKLEKN-GIGYHYILAN 207 (364)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhhcc-CCceEEEecC
Confidence 4678999988888889999999888884 6679999988
No 27
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=94.70 E-value=0.083 Score=44.16 Aligned_cols=75 Identities=19% Similarity=0.297 Sum_probs=47.2
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTP 83 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~p 83 (123)
+.+||||+++..++.+.+|.+|.++|+ + +++|--|- |..... --.....+..-++.++....
T Consensus 231 ~~a~vVvl~~~~~~~~~ll~~a~~~g~-~---~~wigs~~-----------~~~~~~---~~~~~~~~~~G~i~~~~~~~ 292 (458)
T cd06375 231 PNARVVVLFTRSEDARELLAAAKRLNA-S---FTWVASDG-----------WGAQES---IVKGSEDVAEGAITIELASH 292 (458)
T ss_pred CCCEEEEEecChHHHHHHHHHHHHcCC-c---EEEEEecc-----------ccccch---hhhccchhhceEEEEEeccc
Confidence 478999999999999999999999997 4 77775543 321000 00001123345566666665
Q ss_pred CChhHHHHHHHHH
Q psy8573 84 NNEAYRNFSSELL 96 (123)
Q Consensus 84 ~~~~y~~F~~~v~ 96 (123)
.-+.|++|.+.+.
T Consensus 293 ~i~~f~~yl~~l~ 305 (458)
T cd06375 293 PIPDFDRYFQSLT 305 (458)
T ss_pred cchhHHHHHHhCC
Confidence 5566666665553
No 28
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=93.70 E-value=0.33 Score=39.53 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=32.3
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
...|+||+-|+++....|+.+|.++|| ++..|.||.++.+.
T Consensus 198 ~~~~~vIl~~~~~~~~~~l~~a~~~gm-~~~~~~wi~~~~l~ 238 (363)
T cd06381 198 DTLRRALLLLSPNGAYTFIDASVETNL-AIKDSHWFLINEEI 238 (363)
T ss_pred ccceEEEEEcCcHHHHHHHHHHHHcCC-CcCceEEEEecccc
Confidence 344566777788888999999999999 57779988877543
No 29
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=93.65 E-value=0.14 Score=42.61 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=33.5
Q ss_pred ceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 6 VAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 6 ~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
.|+||+=|+++....++.+|.++|| .+..|+||.-+...
T Consensus 200 ~r~iVv~~s~~~~~~il~qA~~lgM-~~~~y~wI~t~~~~ 238 (400)
T cd06392 200 LRRAILLLSPRGAQTFINEAVETNL-ASKDSHWVFVNEEI 238 (400)
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCc-ccCCeEEEEecCCc
Confidence 4677777888888999999999999 68999999988754
No 30
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=93.37 E-value=0.2 Score=41.62 Aligned_cols=40 Identities=23% Similarity=0.435 Sum_probs=35.2
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
+.+||||+.++.++.+.+|.+|.++|| .|+|++|-.|.+.
T Consensus 230 ~~~~vIvl~~~~~~~~~ll~~a~~~~~--~g~~~wig~d~~~ 269 (463)
T cd06376 230 PNARAVIIFANEDDIRRVLEAAKRANQ--VGHFLWVGSDSWG 269 (463)
T ss_pred CCCeEEEEecChHHHHHHHHHHHhcCC--cCceEEEEecccc
Confidence 478999999999999999999999997 4789999888654
No 31
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=92.90 E-value=0.16 Score=37.71 Aligned_cols=65 Identities=29% Similarity=0.342 Sum_probs=45.7
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTP 83 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~p 83 (123)
...++|++|.++...+.++.++++.|+ + +++.++..+..... .|. ..+.++.+.+++++...+
T Consensus 190 ~~~~~v~~~~~~~~~~~~~~~~~~~g~-~-~~~~~i~~~~~~~~------~~~---------~~~~~~~~g~~~~~~~~~ 252 (299)
T cd04509 190 AKPDVIVLCGSGEDAATILKQAAEAGL-T-GGYPILGITLGLSD------VLL---------EAGGEAAEGVLTGTPYFP 252 (299)
T ss_pred cCCCEEEEcccchHHHHHHHHHHHcCC-C-CCCcEEecccccCH------HHH---------HHhHHhhcCcEEeeccCC
Confidence 346899999888899999999999998 5 89999988864311 111 134456667777766555
Q ss_pred CC
Q psy8573 84 NN 85 (123)
Q Consensus 84 ~~ 85 (123)
..
T Consensus 253 ~~ 254 (299)
T cd04509 253 GD 254 (299)
T ss_pred CC
Confidence 43
No 32
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=92.87 E-value=0.23 Score=40.41 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=33.5
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeec
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIEL 43 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~ 43 (123)
+..++||+.|+++....|+.+|.++|| ..-.|.||.-..
T Consensus 177 ~~~~~iil~~~~~~~~~il~qa~~~gm-~~~~y~~il~~~ 215 (371)
T cd06388 177 RQEKKFVIDCEIERLQNILEQIVSVGK-HVKGYHYIIANL 215 (371)
T ss_pred cccEEEEEECCHHHHHHHHHHHHhcCc-cccceEEEEccC
Confidence 456788889999999999999999999 678899888664
No 33
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=92.81 E-value=0.24 Score=40.03 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=31.3
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEee
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIE 42 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id 42 (123)
..++||++++.++...++.+|.++|| +...|+|+..+
T Consensus 192 ~~~~iil~~~~~~~~~il~qa~~~gm-~~~~~~~~~~~ 228 (384)
T cd06393 192 REFRIIFDCSHQMAAQILKQAMAMGM-MTEYYHFIFTT 228 (384)
T ss_pred CceEEEEECCHHHHHHHHHHHHHhcc-ccCceEEEEcc
Confidence 46778888888999999999999999 68899987433
No 34
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=92.78 E-value=0.24 Score=40.14 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=33.6
Q ss_pred cccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEee
Q psy8573 3 NFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIE 42 (123)
Q Consensus 3 ~~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id 42 (123)
.+..++||+.|+.++...|+.+|.++|| +.-.|+||.-.
T Consensus 174 ~~~~~~Iil~~~~~~~~~il~qa~~~gm-~~~~y~~il~~ 212 (370)
T cd06389 174 NKKERRVILDCERDKVNDIVDQVITIGK-HVKGYHYIIAN 212 (370)
T ss_pred cccceEEEEECCHHHHHHHHHHHHHhCc-cccceEEEEcc
Confidence 3567899999999999999999999999 67888887754
No 35
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=92.36 E-value=0.26 Score=39.88 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=33.8
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeec
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIEL 43 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~ 43 (123)
+..|+||+.|+++....|+.+|.++|| ..-.|+||.-++
T Consensus 185 ~~~~~iVv~~~~~~a~~il~qa~~lGm-~~~~y~~i~T~l 223 (333)
T cd06394 185 DKTATIIIDANASMSHTILLKASELGM-TSAFYKYILTTM 223 (333)
T ss_pred cCCCEEEEECChHHHHHHHHHHHHcCC-CCCceEEEEecC
Confidence 467899999999999999999999999 688999994443
No 36
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=91.52 E-value=0.39 Score=39.15 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=28.4
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEe
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNI 41 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~i 41 (123)
+.+++||++++.+....+|.+|.++|| . +. ++|.-
T Consensus 233 ~~~dvIil~~~~~~~~~il~qa~~~g~-~-~~-~~i~~ 267 (410)
T cd06363 233 TKVNVIVVFASRQPAEAFFNSVIQQNL-T-GK-VWIAS 267 (410)
T ss_pred CCCeEEEEEcChHHHHHHHHHHHhcCC-C-CC-EEEEe
Confidence 468999999999999999999999998 3 33 44443
No 37
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=90.69 E-value=0.53 Score=38.72 Aligned_cols=37 Identities=24% Similarity=0.225 Sum_probs=31.8
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecc
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELF 44 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~ 44 (123)
+.+||||+-+..++.+.++.+|.++|| ++++|--|-.
T Consensus 233 ~~a~vVvv~~~~~~~~~l~~~a~~~g~----~~~wigs~~w 269 (403)
T cd06361 233 NKVNVIVVFARQFHVFLLFNKAIERNI----NKVWIASDNW 269 (403)
T ss_pred CCCeEEEEEeChHHHHHHHHHHHHhCC----CeEEEEECcc
Confidence 578999999999999999999999996 4888876644
No 38
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=90.42 E-value=0.61 Score=36.42 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=29.3
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEE
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFN 40 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~ 40 (123)
+.+||||+++++.+.+.++.+|.++|| ++.|+++.
T Consensus 216 ~~~~vvv~~~~~~~~~~~~~~a~~~g~--~~~~~i~~ 250 (348)
T cd06350 216 STARVIVVFGDEDDALRLFCEAYKLGM--TGKYWIIS 250 (348)
T ss_pred CCCcEEEEEeCcHHHHHHHHHHHHhCC--CCeEEEEE
Confidence 456999999999999999999999997 46676643
No 39
>KOG1056|consensus
Probab=89.85 E-value=0.96 Score=41.47 Aligned_cols=77 Identities=21% Similarity=0.407 Sum_probs=54.3
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTP 83 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~p 83 (123)
..+||||+=++.++.|.|+.+|.+++| +|+++.+--|- |...+.. -+.....++-+++|-+.++
T Consensus 251 ~~a~vvV~F~~~~~~r~~~~aa~~~n~--~g~~~wiaSd~-----------W~~~~~~---~~~~e~~a~g~i~i~l~~~ 314 (878)
T KOG1056|consen 251 PNARVVVVFCRGEDARRLLKAARRANL--TGEFLWIASDG-----------WASQNSP---TEAPEREAEGAITIKLASP 314 (878)
T ss_pred CCCeEEEEecCcchHHHHHHHHHHhCC--CcceEEEecch-----------hhccCCh---hhhhhhhhceeEEEEecCC
Confidence 578999999999999999999999997 68888887663 5321111 1123335666777878776
Q ss_pred CChhHHHHHHHHH
Q psy8573 84 NNEAYRNFSSELL 96 (123)
Q Consensus 84 ~~~~y~~F~~~v~ 96 (123)
.=+-+++|.+.+.
T Consensus 315 ~v~~F~~y~~s~~ 327 (878)
T KOG1056|consen 315 QVPGFDRYFQSLH 327 (878)
T ss_pred cchhHHHHHHhcC
Confidence 6666666666654
No 40
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=87.22 E-value=0.83 Score=38.85 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=30.5
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeec
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIEL 43 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~ 43 (123)
+.+||||+.++.++.+.+|.+|+++|+ + | .++|--+-
T Consensus 243 ~~a~vVvl~~~~~~~~~ll~qa~~~g~-~-~-~iwI~s~~ 279 (510)
T cd06364 243 STAKVIVVFSSGPDLEPLIKEIVRRNI-T-G-KIWLASEA 279 (510)
T ss_pred cCCeEEEEEeCcHHHHHHHHHHHHhCC-C-C-cEEEEEch
Confidence 468999999999999999999999997 3 4 67775543
No 41
>KOG4440|consensus
Probab=75.06 E-value=4.6 Score=36.39 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=35.7
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
.+||+|+.++.++...+..+|-+++| |...||+|.-|.-.
T Consensus 224 ~~rv~~~~as~dDA~~ifr~Ag~lnm-TG~G~VWiV~E~a~ 263 (993)
T KOG4440|consen 224 EARVIILSASEDDAATIFRAAGMLNM-TGSGYVWIVGERAI 263 (993)
T ss_pred hheeEEeecccchHHHHHHhhhhhcc-cCceEEEEEecccc
Confidence 58999999999999999999999999 68899999988644
No 42
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=70.33 E-value=24 Score=27.07 Aligned_cols=27 Identities=7% Similarity=0.067 Sum_probs=23.4
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
+..++||++....+...++.+|++.|+
T Consensus 189 ~~~~~vi~~~~~~~~~~~~~~~~~~g~ 215 (334)
T cd06342 189 ANPDAVFFGGYYPEAGPLVRQMRQLGL 215 (334)
T ss_pred cCCCEEEEcCcchhHHHHHHHHHHcCC
Confidence 456789999888888899999999997
No 43
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=70.06 E-value=9.8 Score=27.05 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=31.0
Q ss_pred ceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccccc
Q psy8573 6 VAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSM 47 (123)
Q Consensus 6 ~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s 47 (123)
.++||+|.+ ...+.++.++++.|+ ..+++.++-.|.....
T Consensus 183 ~~~i~~~~~-~~a~~~~~~~~~~g~-~~~~~~ii~~~~~~~~ 222 (269)
T cd01391 183 PDAIFACND-EMAAGALKAAREAGL-TPGDISIIGFDGSPAA 222 (269)
T ss_pred CCEEEEcCc-hHHHHHHHHHHHcCC-CCCCCEEEeccccccc
Confidence 456666655 788999999999998 4789999988865543
No 44
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=64.92 E-value=12 Score=29.02 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=27.8
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEE
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFF 39 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi 39 (123)
..+++||+|+.+.+.+.++.++.+.|+ +..++..
T Consensus 195 ~~~d~i~~~~~~~~~~~~~~~~~~~g~--~~~~~~~ 228 (345)
T cd06338 195 AGPDAVVVAGHFPDAVLLVRQMKELGY--NPKALYM 228 (345)
T ss_pred cCCCEEEECCcchhHHHHHHHHHHcCC--CCCEEEE
Confidence 457899999999999999999999997 3555443
No 45
>KOG1053|consensus
Probab=57.59 E-value=22 Score=33.39 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=33.9
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecc
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELF 44 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~ 44 (123)
.+.||++-|+-++.+.|...|.+.|| +.-+|++|.-++-
T Consensus 231 ~a~VillyC~~eea~~IF~~A~q~Gl-~g~~y~Wi~pqlv 269 (1258)
T KOG1053|consen 231 QAPVILLYCSREEAERIFEEAEQAGL-TGPGYVWIVPQLV 269 (1258)
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcCC-cCCceEEEeehhc
Confidence 46789999999999999999999998 6889999996543
No 46
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=56.02 E-value=21 Score=28.10 Aligned_cols=34 Identities=6% Similarity=0.059 Sum_probs=27.7
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEE
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFF 39 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi 39 (123)
+..++|++++.......++.+|++.|+ ++..++.
T Consensus 198 ~~~d~v~~~~~~~~~~~~~~~~~~~G~--~~~~~~~ 231 (347)
T cd06340 198 ANPDAILPASYTNDAILLVRTMKEQRV--EPKAVYS 231 (347)
T ss_pred cCCCEEEEcccchhHHHHHHHHHHcCC--CCcEEEe
Confidence 467899999998888999999999997 3555554
No 47
>PF10898 DUF2716: Protein of unknown function (DUF2716); InterPro: IPR020323 This entry represents a group of uncharacterised proteins.
Probab=55.37 E-value=12 Score=27.29 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=19.3
Q ss_pred CCCcEEEEEeecccccCCCCCCCccc
Q psy8573 32 DSGEYVFFNIELFSSMNAASLTPWYV 57 (123)
Q Consensus 32 ~~geYVFi~id~~~~s~~~~~~~W~~ 57 (123)
+||||.||+-.-|+.|.. | .||..
T Consensus 110 PdGDYyfF~~~Df~~G~l-G-hPWe~ 133 (143)
T PF10898_consen 110 PDGDYYFFIDKDFSWGYL-G-HPWEK 133 (143)
T ss_pred CCCCeEEEEecCcceecc-C-CCCcc
Confidence 689999999998888865 3 48974
No 48
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=52.08 E-value=58 Score=24.98 Aligned_cols=26 Identities=4% Similarity=-0.020 Sum_probs=21.2
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
..-+|+++..+.....++.++.+.|+
T Consensus 189 ~pd~v~~~~~~~~~~~~~~~~~~~g~ 214 (336)
T cd06360 189 VPDAVFVFFAGGDAIKFVKQYDAAGL 214 (336)
T ss_pred CCCEEEEecccccHHHHHHHHHHcCC
Confidence 34577778777788899999999997
No 49
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=51.87 E-value=84 Score=23.94 Aligned_cols=27 Identities=26% Similarity=0.154 Sum_probs=22.9
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
...++||+.+..+..+.++.++++.|+
T Consensus 190 ~~~d~i~~~~~~~~~~~~~~~~~~~g~ 216 (334)
T cd06347 190 KNPDVIFLPGYYTEVGLIAKQARELGI 216 (334)
T ss_pred cCCCEEEEcCchhhHHHHHHHHHHcCC
Confidence 456788888888888999999999996
No 50
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=49.29 E-value=44 Score=24.36 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=22.8
Q ss_pred cceEEEEEcChH-HHHHHHHHHHH-----cCCCCCCcEEEE
Q psy8573 5 SVAVVVLCANPQ-TVREILLAAEE-----LNMIDSGEYVFF 39 (123)
Q Consensus 5 ~~RVVilC~~~~-~~R~lmlaA~~-----~Gm~~~geYVFi 39 (123)
..|||+-|..+. ++|.|+.+|.+ .++ ..+..|.+
T Consensus 9 ~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~~-~~~~~v~V 48 (145)
T PF12053_consen 9 RTRVVVPCGDGQLTVRDLIQQALRRYRKAKEK-DPDYWVVV 48 (145)
T ss_dssp TEEEEEEESSS---HHHHHHHHHHHHHHHTT---TTS-EEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHhHhHHHhhcc-CCCceEEE
Confidence 468999999884 89999999955 565 45666655
No 51
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=48.18 E-value=25 Score=25.50 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=9.4
Q ss_pred HHHHHHHcCC
Q psy8573 21 ILLAAEELNM 30 (123)
Q Consensus 21 lmlaA~~~Gm 30 (123)
||++|+++|+
T Consensus 124 l~LaA~~lGl 133 (185)
T cd02148 124 FILAARALGL 133 (185)
T ss_pred HHHHHHHcCC
Confidence 9999999996
No 52
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=44.28 E-value=1.3e+02 Score=22.84 Aligned_cols=34 Identities=3% Similarity=0.037 Sum_probs=24.2
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEE
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFF 39 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi 39 (123)
....+|+++..+.....++.+++++|+ +++.-++
T Consensus 185 ~~~d~i~~~~~~~~~~~~~~~~~~~g~--~~~~~~~ 218 (333)
T cd06332 185 AKPDAVFVFLPGGMAVNFVKQYDQAGL--KKKIPLY 218 (333)
T ss_pred cCCCEEEEecccchHHHHHHHHHHcCc--ccCCcee
Confidence 345678888776777889999999997 3444443
No 53
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=42.18 E-value=69 Score=23.25 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=60.4
Q ss_pred cChHHHHHHHHHHHHcCCCCC-CcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhh-hcccCCCChhHHH
Q psy8573 13 ANPQTVREILLAAEELNMIDS-GEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLT-VTARTPNNEAYRN 90 (123)
Q Consensus 13 ~~~~~~R~lmlaA~~~Gm~~~-geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~-It~~~p~~~~y~~ 90 (123)
++++..+.++-.|.+.|++.- |+++-...|+-+...|.+ ++ ++ ++--+.+-.|+.++- |+-....+. +.
T Consensus 34 mspdqAk~li~~A~~eGLl~~~~~~l~~~Fd~~~v~iP~~---Fk--P~--~~~l~e~~~fe~ild~ia~~~g~~~--~e 104 (144)
T PF09999_consen 34 MSPDQAKRLIDEAIEEGLLEEEGGYLVPNFDPSEVEIPLG---FK--PD--EEILQERDPFERILDYIAAKTGIEK--QE 104 (144)
T ss_pred CCHHHHHHHHHHHHHCCCeeecCCEEEEecCccccccCCC---CC--Cc--HHHHhcccHHHHHHHHHHHhcCCCH--HH
Confidence 467899999999999998754 899999999877666522 22 11 111122334554442 333222211 22
Q ss_pred HHHHHHHhhccccCCCCCcccccccccccccc
Q psy8573 91 FSSELLSAVLPILDHAKVASAKMPLLQNRYTC 122 (123)
Q Consensus 91 F~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~ 122 (123)
-..++. .+++.+...+.++-+.=+++-++-|
T Consensus 105 vv~~in-~~q~~~~~~l~~e~aall~ake~Gv 135 (144)
T PF09999_consen 105 VVAEIN-ELQEELGGLLDPEAAALLYAKEKGV 135 (144)
T ss_pred HHHHHH-HHHHHHhccCCHHHHHHHHHHHhCC
Confidence 344443 4778888778777777666666554
No 54
>PF11885 DUF3405: Protein of unknown function (DUF3405); InterPro: IPR021822 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 636 to 810 amino acids in length.
Probab=40.33 E-value=1.1e+02 Score=26.77 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=28.1
Q ss_pred cceEEEEEcCh-----H---HHHHHHHHHHHcCCCCCCcE-EEEEeecccccCCCCCCCcc
Q psy8573 5 SVAVVVLCANP-----Q---TVREILLAAEELNMIDSGEY-VFFNIELFSSMNAASLTPWY 56 (123)
Q Consensus 5 ~~RVVilC~~~-----~---~~R~lmlaA~~~Gm~~~geY-VFi~id~~~~s~~~~~~~W~ 56 (123)
|.-|||=|-++ + .+|.|.- ++.|.+.||| |||.+++.....+ .|.
T Consensus 103 RTAvvlR~w~g~~yte~di~~lRSLIs---ELSL~SGGEY~V~lLVhVKD~~~~----Iwa 156 (496)
T PF11885_consen 103 RTAVVLRTWTGYKYTENDIQNLRSLIS---ELSLRSGGEYDVHLLVHVKDDDLP----IWA 156 (496)
T ss_pred ceEEEEEecCCCCcCHHHHHhHHHHHH---HHhhhcCCceEEEEEEEecCCCCC----ccc
Confidence 33466666554 2 3455443 3444467899 9999999886543 675
No 55
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=37.99 E-value=29 Score=23.79 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeec
Q psy8573 19 REILLAAEELNMIDSGEYVFFNIEL 43 (123)
Q Consensus 19 R~lmlaA~~~Gm~~~geYVFi~id~ 43 (123)
-.+-.+|.++|| .|+++++..
T Consensus 47 ~~~~~~a~~~Gl----~y~~iPv~~ 67 (110)
T PF04273_consen 47 AEEAAAAEALGL----QYVHIPVDG 67 (110)
T ss_dssp HCHHHHHHHCT-----EEEE----T
T ss_pred HHHHHHHHHcCC----eEEEeecCC
Confidence 346678899998 799999983
No 56
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=37.85 E-value=1.3e+02 Score=23.27 Aligned_cols=34 Identities=3% Similarity=-0.000 Sum_probs=25.1
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEE
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFF 39 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi 39 (123)
+...+|+++..+...-.++.++.++|+ . ++..++
T Consensus 185 ~~pd~v~~~~~~~~~~~~~~~~~~~G~-~-~~~~~~ 218 (333)
T cd06359 185 AKPDAVFVFLPGGMGVNFVKQYRQAGL-K-KDIPLY 218 (333)
T ss_pred CCCCEEEEEccCccHHHHHHHHHHcCc-c-cCCeee
Confidence 456788888877777889999999997 2 344444
No 57
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=37.60 E-value=42 Score=24.52 Aligned_cols=10 Identities=40% Similarity=0.733 Sum_probs=9.4
Q ss_pred HHHHHHHcCC
Q psy8573 21 ILLAAEELNM 30 (123)
Q Consensus 21 lmlaA~~~Gm 30 (123)
+||+|+.+|+
T Consensus 131 l~LaA~~~Gl 140 (195)
T PRK05365 131 LILAARALGL 140 (195)
T ss_pred HHHHHHHcCC
Confidence 9999999997
No 58
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=35.72 E-value=31 Score=21.22 Aligned_cols=20 Identities=40% Similarity=0.493 Sum_probs=16.1
Q ss_pred HHHH-HcCCCCCCcEEEEEee
Q psy8573 23 LAAE-ELNMIDSGEYVFFNIE 42 (123)
Q Consensus 23 laA~-~~Gm~~~geYVFi~id 42 (123)
.-|. ++||.-+||-||.+.|
T Consensus 59 ~~AR~~lgm~~~~E~v~~~~~ 79 (80)
T PF04977_consen 59 KVAREKLGMVKPGEIVFKIPE 79 (80)
T ss_pred HHHHHHcCCcCCCCEEEeCCC
Confidence 3454 8999999999998765
No 59
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=34.85 E-value=17 Score=21.23 Aligned_cols=13 Identities=23% Similarity=0.554 Sum_probs=11.0
Q ss_pred ccccccccccccC
Q psy8573 111 AKMPLLQNRYTCT 123 (123)
Q Consensus 111 ~~~p~~~~~~~~~ 123 (123)
.++|..|.||.|.
T Consensus 7 g~~PI~G~RykC~ 19 (43)
T cd02342 7 GVLPITGPRYKSK 19 (43)
T ss_pred CCCcccccceEeC
Confidence 3789999999984
No 60
>COG3602 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.07 E-value=39 Score=24.05 Aligned_cols=28 Identities=18% Similarity=0.465 Sum_probs=17.6
Q ss_pred ChH-HHHHHHHHHHHcCCCCCCcEEEEEeec
Q psy8573 14 NPQ-TVREILLAAEELNMIDSGEYVFFNIEL 43 (123)
Q Consensus 14 ~~~-~~R~lmlaA~~~Gm~~~geYVFi~id~ 43 (123)
+++ +.+.+|....- -+ .+|+|||-.+..
T Consensus 2 sGet~Lk~LL~smtP-eL-~~G~yVfcT~~~ 30 (134)
T COG3602 2 SGETDLKTLLASMTP-EL-LDGDYVFCTVAP 30 (134)
T ss_pred CchhHHHHHHHhcCc-cc-cCCceEEEEecC
Confidence 444 34555444433 34 599999999885
No 61
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=32.75 E-value=84 Score=25.39 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=27.6
Q ss_pred eEEEEEcC----hHHHHHHHHHHHHcCCCCCCcEEEEEeeccccc
Q psy8573 7 AVVVLCAN----PQTVREILLAAEELNMIDSGEYVFFNIELFSSM 47 (123)
Q Consensus 7 RVVilC~~----~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s 47 (123)
+||-+.|+ .+.+++||.||.+.|. -|||.+|..+-.
T Consensus 148 kVIAIVMD~FTD~dIf~DLleAa~kR~V-----pVYiLLD~~~~~ 187 (284)
T PF07894_consen 148 KVIAIVMDVFTDVDIFCDLLEAANKRGV-----PVYILLDEQNLP 187 (284)
T ss_pred ceeEEEeeccccHHHHHHHHHHHHhcCC-----cEEEEechhcCh
Confidence 46666665 3789999999988774 599999987644
No 62
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.47 E-value=80 Score=18.95 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=19.9
Q ss_pred eEEEEE-cChHHHHHHHHHHHHcCC
Q psy8573 7 AVVVLC-ANPQTVREILLAAEELNM 30 (123)
Q Consensus 7 RVVilC-~~~~~~R~lmlaA~~~Gm 30 (123)
+++++| ++++...+++.+..+.|+
T Consensus 2 ~~ll~~g~~~~el~~~l~~~r~~~~ 26 (58)
T PF12646_consen 2 EFLLFSGFSGEELDKFLDALRKAGI 26 (58)
T ss_pred CEEEECCCCHHHHHHHHHHHHHcCC
Confidence 678999 566788999999999885
No 63
>PF10330 Stb3: Putative Sin3 binding protein; InterPro: IPR018818 This entry represents Sin3 binding proteins conserved in fungi. Sin3p does not bind DNA directly even though the yeast SIN3 gene functions as a transcriptional repressor. Sin3p is part of a large multiprotein complex []. Stb3 appears to bind directly to ribosomal RNA Processing Elements (RRPE) although there are no obvious domains which would accord with this, implying that Stb3 may be a novel RNA-binding protein [].
Probab=31.95 E-value=83 Score=21.25 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCcEEEEEe
Q psy8573 15 PQTVREILLAAEELNMIDSGEYVFFNI 41 (123)
Q Consensus 15 ~~~~R~lmlaA~~~Gm~~~geYVFi~i 41 (123)
+.-+|.|..+|-+.|- .+|+-||==+
T Consensus 42 ~sKqRRLi~~ALE~gd-~~~~VvFEKv 67 (92)
T PF10330_consen 42 PSKQRRLIMAALEGGD-KDGDVVFEKV 67 (92)
T ss_pred HHHHHHHHHHHHhcCC-CCCCEEEEEe
Confidence 4578899999999886 6899888544
No 64
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=31.83 E-value=66 Score=24.94 Aligned_cols=37 Identities=3% Similarity=-0.167 Sum_probs=27.6
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEee
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIE 42 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id 42 (123)
...++||+++.+.+...++.+|.+.|+ .. ...++.-+
T Consensus 194 ~~~d~ii~~~~~~~~~~~~~~~~~~g~-~~-~~~~~~~~ 230 (346)
T cd06330 194 AKPDAIFSSLWGGDLVTFVRQANARGL-FD-GTTVVLTL 230 (346)
T ss_pred cCCCEEEEecccccHHHHHHHHHhcCc-cc-CceEEeec
Confidence 456788888888888999999999997 33 44555433
No 65
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=31.59 E-value=1.2e+02 Score=18.25 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=17.1
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
....||+.|.++...........+.|.
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G~ 81 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELGF 81 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcCC
Confidence 345788889665444445555567786
No 66
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=31.55 E-value=92 Score=20.62 Aligned_cols=25 Identities=8% Similarity=0.029 Sum_probs=17.7
Q ss_pred ceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 6 VAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 6 ~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
.+||+.|.++...........++|.
T Consensus 59 ~~vvlyC~~G~rS~~aa~~L~~~G~ 83 (101)
T TIGR02981 59 DTVKLYCNAGRQSGMAKDILLDMGY 83 (101)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHcCC
Confidence 4678888887655556666677886
No 67
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=31.30 E-value=94 Score=22.05 Aligned_cols=36 Identities=31% Similarity=0.314 Sum_probs=24.7
Q ss_pred ceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 6 VAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 6 ~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
.-|+|+.++++..|++...|.+.|+ ..+-|+-..+.
T Consensus 54 ~PipIL~a~~~~L~~l~~~a~~~~i----~~~~F~~~aq~ 89 (133)
T PF09391_consen 54 IPIPILKANSEQLRELRQKALEREI----TVVDFTDEAQS 89 (133)
T ss_dssp S-EEEEEE-HHHHHHHHHHHHHTT-------EEEEGGGGG
T ss_pred cCeEEEEcCHHHHHHHHHHHHHCCC----eEEeChHHHhh
Confidence 3489999999999999999998875 35555555444
No 68
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=30.41 E-value=60 Score=18.75 Aligned_cols=18 Identities=44% Similarity=0.416 Sum_probs=14.7
Q ss_pred ChHHHHHHHHHHHHcCCC
Q psy8573 14 NPQTVREILLAAEELNMI 31 (123)
Q Consensus 14 ~~~~~R~lmlaA~~~Gm~ 31 (123)
++++.+.++.+|.++|..
T Consensus 27 s~~tr~rI~~~a~~lgY~ 44 (46)
T PF00356_consen 27 SEETRERILEAAEELGYR 44 (46)
T ss_dssp THHHHHHHHHHHHHHTB-
T ss_pred CHHHHHHHHHHHHHHCCC
Confidence 457889999999999973
No 69
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=30.36 E-value=76 Score=22.99 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.2
Q ss_pred ceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 6 VAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 6 ~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
...|++|+++..++.+-..+.+.|+
T Consensus 176 ~~~vyicGp~~m~~~~~~~l~~~gv 200 (211)
T cd06185 176 GTHVYVCGPEGMMDAVRAAAAALGW 200 (211)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCC
Confidence 3579999999988888888888896
No 70
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=28.70 E-value=77 Score=23.20 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=20.5
Q ss_pred ceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 6 VAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 6 ~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
...+++|+++..++.+...+.+.|+
T Consensus 187 ~~~vyicGp~~m~~~~~~~L~~~Gv 211 (222)
T cd06194 187 DDVVYLCGAPSMVNAVRRRAFLAGA 211 (222)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCC
Confidence 3568999999888888888888886
No 71
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=28.24 E-value=1.3e+02 Score=22.76 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=15.0
Q ss_pred ceEEEEEcChHHHHHHHHHHHH
Q psy8573 6 VAVVVLCANPQTVREILLAAEE 27 (123)
Q Consensus 6 ~RVVilC~~~~~~R~lmlaA~~ 27 (123)
...|++|.++..++.....+.+
T Consensus 206 ~~~vy~CGp~~Mv~~~~~~l~~ 227 (248)
T PRK10926 206 TSHVMLCGNPQMVRDTQQLLKE 227 (248)
T ss_pred CCEEEEECCHHHHHHHHHHHHH
Confidence 3579999999766665555543
No 72
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.02 E-value=71 Score=24.80 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=23.6
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
+...+||+++.+.....++.+|.+.|+
T Consensus 191 ~~~d~vi~~~~~~~~~~~~~~~~~~g~ 217 (344)
T cd06348 191 SKPDLIVISALAADGGNLVRQLRELGY 217 (344)
T ss_pred cCCCEEEECCcchhHHHHHHHHHHcCC
Confidence 456788999888888899999999997
No 73
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=27.81 E-value=74 Score=24.49 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=23.5
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
....+|++++.+.+...|+.++.++|+
T Consensus 191 ~~pd~v~~~~~~~~~~~~~~~~~~~G~ 217 (312)
T cd06346 191 GGPDALVVIGYPETGSGILRSAYEQGL 217 (312)
T ss_pred cCCCEEEEecccchHHHHHHHHHHcCC
Confidence 456789999888888999999999997
No 74
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=27.49 E-value=98 Score=21.47 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=18.4
Q ss_pred ccceEEEEEc------ChHHHHHHHHHHHHc
Q psy8573 4 FSVAVVVLCA------NPQTVREILLAAEEL 28 (123)
Q Consensus 4 ~~~RVVilC~------~~~~~R~lmlaA~~~ 28 (123)
++.|+|+++. ..+++|.++.+.|++
T Consensus 71 t~~Kfvl~~~~~~~~~~d~~ik~fF~~vh~~ 101 (132)
T PF04628_consen 71 TGIKFVLVHDMSDNSIRDEDIKQFFKEVHEL 101 (132)
T ss_dssp T--EEEEEECGGG-S--HHHHHHHHHHHHHH
T ss_pred CceeEEEEEecccCCcchHHHHHHHHHHHHH
Confidence 4668888887 346899999999985
No 75
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=27.38 E-value=1.2e+02 Score=22.47 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=20.1
Q ss_pred eEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 7 AVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 7 RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
..|++|.++...+.+.....++|.
T Consensus 202 ~~vyiCGp~~m~~~~~~~l~~~G~ 225 (241)
T cd06195 202 SHVMLCGNPQMIDDTQELLKEKGF 225 (241)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCC
Confidence 468999999888888888888885
No 76
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=27.34 E-value=94 Score=24.29 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=29.9
Q ss_pred eEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 7 AVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 7 RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
..|++|.++.....+.....++|+ +.+=+|+.++...
T Consensus 213 ~~vyiCGP~~m~~~v~~~L~~~Gv--~~~~i~~~l~~~m 249 (289)
T PRK08345 213 TYAAICGPPVMYKFVFKELINRGY--RPERIYVTLERRM 249 (289)
T ss_pred cEEEEECCHHHHHHHHHHHHHcCC--CHHHEEEEehhcc
Confidence 468999999888888888888996 5777888887653
No 77
>KOG3282|consensus
Probab=27.08 E-value=1.5e+02 Score=22.61 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=29.5
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecc
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELF 44 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~ 44 (123)
..++||+=|-+.+++-.|...|.++|+ |.+++.|.-
T Consensus 123 GQ~KIvvk~~~e~~l~~l~~~A~~~gl-----~t~~i~DAG 158 (190)
T KOG3282|consen 123 GQAKIVVKAESEEELMELQKDAKKLGL-----YTHLIQDAG 158 (190)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHcCC-----cEEEEEcCC
Confidence 357899999988999999999988885 678888863
No 78
>cd02137 Nitroreductase_1 Nitroreductase-like family 1. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=26.91 E-value=1.2e+02 Score=20.82 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=13.8
Q ss_pred EEEEEcC--hH-HHHHHHHHHHHcCC
Q psy8573 8 VVVLCAN--PQ-TVREILLAAEELNM 30 (123)
Q Consensus 8 VVilC~~--~~-~~R~lmlaA~~~Gm 30 (123)
+|++|+. .. ..-++|++|+++|+
T Consensus 73 ~i~~~~~~d~g~a~~~l~LaA~~~Gl 98 (148)
T cd02137 73 VILVLGDLNAGLAAMNLMLAARAYGY 98 (148)
T ss_pred EEEEEeCChhHHHHHHHHHHHHHcCC
Confidence 3455553 12 45667778877775
No 79
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=26.45 E-value=31 Score=20.08 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=10.8
Q ss_pred ccccccccccccC
Q psy8573 111 AKMPLLQNRYTCT 123 (123)
Q Consensus 111 ~~~p~~~~~~~~~ 123 (123)
+.+|..|.||-|.
T Consensus 7 ~~~pI~G~RykC~ 19 (45)
T cd02344 7 QMFPINGPRFKCR 19 (45)
T ss_pred CCCCCccCeEECC
Confidence 3679999999985
No 80
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=26.43 E-value=1e+02 Score=19.13 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=19.1
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
....||+.|.++.........+.+.|.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~ 81 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGF 81 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCC
Confidence 345688888876665666777777885
No 81
>COG4954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.36 E-value=98 Score=21.76 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=25.4
Q ss_pred eEEEEEcChHHHHHHHHHHHHcCCCCCCcEE
Q psy8573 7 AVVVLCANPQTVREILLAAEELNMIDSGEYV 37 (123)
Q Consensus 7 RVVilC~~~~~~R~lmlaA~~~Gm~~~geYV 37 (123)
-||+|..+-++.+.+...|.+.+. +++=|+
T Consensus 57 pvivls~dqetl~aihrraler~v-ttslyi 86 (135)
T COG4954 57 PVIVLSGDQETLKAIHRRALERKV-TTSLYI 86 (135)
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCC-CcceeH
Confidence 478888888999999999999997 677653
No 82
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=26.36 E-value=1.2e+02 Score=23.46 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=26.2
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEE
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYV 37 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYV 37 (123)
....+|+++........++.++.+.|+ ..+-++
T Consensus 189 ~~~d~v~~~~~~~~~~~~~~~~~~~g~-~~~~~~ 221 (334)
T cd06327 189 SGADVLVLANAGADTVNAIKQAAEFGL-TKGQKL 221 (334)
T ss_pred CCCCEEEEeccchhHHHHHHHHHHhCC-ccCCcE
Confidence 456899999988888899999999997 434443
No 83
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=25.97 E-value=1e+02 Score=25.66 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=23.7
Q ss_pred ceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEee
Q psy8573 6 VAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIE 42 (123)
Q Consensus 6 ~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id 42 (123)
.|+||+=|+.+..+.+|.+|.+ .|+||.-+
T Consensus 212 ~~~ill~cs~e~~~~il~~~~~-------~y~wIv~~ 241 (382)
T cd06377 212 PAVVLFGCDVARARRVLELTPP-------GPHWILGD 241 (382)
T ss_pred ceEEEEECCHHHHHHHHHhhcc-------ceEEEEcC
Confidence 7888999999988888866633 29999965
No 84
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=25.69 E-value=74 Score=20.80 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=16.7
Q ss_pred cChHHHHHHHHHHHHcCCC
Q psy8573 13 ANPQTVREILLAAEELNMI 31 (123)
Q Consensus 13 ~~~~~~R~lmlaA~~~Gm~ 31 (123)
.++.++|+.|.+..++|++
T Consensus 35 ~s~aTIRN~M~~Le~lGlv 53 (78)
T PF03444_consen 35 RSPATIRNEMADLEELGLV 53 (78)
T ss_pred CChHHHHHHHHHHHHCCCc
Confidence 4678999999999999984
No 85
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=25.40 E-value=1.3e+02 Score=18.71 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=15.7
Q ss_pred eEEEEEcCh----HHH-HHHHHHHHHcCC
Q psy8573 7 AVVVLCANP----QTV-REILLAAEELNM 30 (123)
Q Consensus 7 RVVilC~~~----~~~-R~lmlaA~~~Gm 30 (123)
||+++|..+ -.. ..+-.++.++|+
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi 29 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGI 29 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccC
Confidence 689999765 244 455566677773
No 86
>cd02140 Nitroreductase_4 Nitroreductase-like family 4. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=25.07 E-value=49 Score=24.04 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcCC
Q psy8573 18 VREILLAAEELNM 30 (123)
Q Consensus 18 ~R~lmlaA~~~Gm 30 (123)
.-+|||+|+++|+
T Consensus 127 ~~nl~LaA~~~Gl 139 (192)
T cd02140 127 QIAVWTALAAEGI 139 (192)
T ss_pred HHHHHHHHHhCCC
Confidence 4689999999997
No 87
>PF09263 PEX-2N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015343 This domain adopts a Cdc48 domain 2-like fold, with a beta-alpha-beta(3) arrangement. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; PDB: 1WLF_A.
Probab=24.96 E-value=60 Score=21.70 Aligned_cols=16 Identities=38% Similarity=0.698 Sum_probs=10.7
Q ss_pred HHHHcCCCCCCcEEEEE
Q psy8573 24 AAEELNMIDSGEYVFFN 40 (123)
Q Consensus 24 aA~~~Gm~~~geYVFi~ 40 (123)
-++++|+ .+|+=||+-
T Consensus 68 lgeKLGl-~dGeQvfLr 83 (87)
T PF09263_consen 68 LGEKLGL-SDGEQVFLR 83 (87)
T ss_dssp HHHHTT---TT-EEEEE
T ss_pred HHHhhCC-CcCCeEeee
Confidence 3688998 899999973
No 88
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.94 E-value=1.2e+02 Score=23.83 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=25.6
Q ss_pred ccceEEEEEcChH-HHHHHHHHHHHcCCCCCCcE
Q psy8573 4 FSVAVVVLCANPQ-TVREILLAAEELNMIDSGEY 36 (123)
Q Consensus 4 ~~~RVVilC~~~~-~~R~lmlaA~~~Gm~~~geY 36 (123)
+...+|++|+.+. +...++.++.+.|+ ++..
T Consensus 192 ~~~d~v~~~~~~~~~~~~~~~~~~~~g~--~~~~ 223 (347)
T cd06336 192 EKPDVIFLGGPSPAPAALVIKQARELGF--KGGF 223 (347)
T ss_pred cCCCEEEEcCCCchHHHHHHHHHHHcCC--CccE
Confidence 5678899998887 89999999999997 3544
No 89
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=24.42 E-value=1.2e+02 Score=18.65 Aligned_cols=29 Identities=21% Similarity=0.116 Sum_probs=19.7
Q ss_pred CcccceEEEEEcCh----HHHHHHHHHHHHcCC
Q psy8573 2 FNFSVAVVVLCANP----QTVREILLAAEELNM 30 (123)
Q Consensus 2 ~~~~~RVVilC~~~----~~~R~lmlaA~~~Gm 30 (123)
|+.+...=.|.+++ .+.|.+.+-|+++||
T Consensus 11 Fkdd~~~~eL~Fp~~ls~~eRriih~la~~lGL 43 (60)
T cd02639 11 FKDDRMRDELAFPSSLSPAERRIVHLLASRLGL 43 (60)
T ss_pred EecCCCceEEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 44444444444444 578889999999998
No 90
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.19 E-value=1.1e+02 Score=21.04 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 16 QTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 16 ~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
.+.-++|.+|-+... ++-.|+|=++|.++
T Consensus 26 Kdt~eWLeaalkRKy-p~~~F~~~YiDI~n 54 (106)
T COG4837 26 KDTYEWLEAALKRKY-PNQPFKYTYIDITN 54 (106)
T ss_pred hhHHHHHHHHHhccC-CCCCcEEEEEEcCC
Confidence 467889999999998 88899999999976
No 91
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=23.79 E-value=1.2e+02 Score=22.35 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.6
Q ss_pred ceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 6 VAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 6 ~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
...|++|.++...+.+...+.+.|.
T Consensus 197 ~~~v~~CGp~~~~~~v~~~l~~~G~ 221 (232)
T cd06212 197 GCDVYLCGPPPMIDAALPVLEMSGV 221 (232)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCC
Confidence 4579999999988888888889996
No 92
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=23.29 E-value=1.2e+02 Score=19.28 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=15.3
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
.-+||+.|.++...........+.|.
T Consensus 61 ~~~ivv~C~~G~rs~~aa~~L~~~G~ 86 (100)
T cd01523 61 DQEVTVICAKEGSSQFVAELLAERGY 86 (100)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHcCc
Confidence 34688888776433344444455675
No 93
>PRK13877 conjugal transfer relaxosome component TraJ; Provisional
Probab=23.12 E-value=76 Score=22.05 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=26.6
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCCCCCCcEE
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNMIDSGEYV 37 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYV 37 (123)
+...|-+.+++++...|...|.+.|| +-++|+
T Consensus 9 R~~~I~vrvt~eE~~~I~~kA~~AGl-S~SeYL 40 (114)
T PRK13877 9 RGRHLRVPVLPDEKAEIEANAAAAGL-SVARYL 40 (114)
T ss_pred cCceeEEEeCHHHHHHHHHHHHHhCC-CHHHHH
Confidence 45567888999999999999999998 677773
No 94
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=23.03 E-value=1.5e+02 Score=22.45 Aligned_cols=28 Identities=21% Similarity=0.516 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 17 TVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 17 ~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
+-++-..+|.++|+ +.|..+||-+|...
T Consensus 90 dA~~A~~~A~~lG~-p~gs~IYfavD~d~ 117 (212)
T cd06418 90 DARDAVAAARALGF-PPGTIIYFAVDFDA 117 (212)
T ss_pred HHHHHHHHHHHcCC-CCCCEEEEEeecCC
Confidence 55777888899998 89999999999644
No 95
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=22.93 E-value=1e+02 Score=27.15 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=17.2
Q ss_pred ccceEEEEEcChH--HHHHHHHHHHHcC
Q psy8573 4 FSVAVVVLCANPQ--TVREILLAAEELN 29 (123)
Q Consensus 4 ~~~RVVilC~~~~--~~R~lmlaA~~~G 29 (123)
.++|||+-|.++. -+.++..+|.++|
T Consensus 225 a~grVIv~tfaSni~Ri~~i~~~A~~~g 252 (555)
T COG0595 225 AKGRVIVTTFASNIERIQTIIDAAEKLG 252 (555)
T ss_pred CCCcEEEEEchhhHHHHHHHHHHHHHcC
Confidence 4789999998875 3344555555543
No 96
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=22.88 E-value=84 Score=18.81 Aligned_cols=15 Identities=53% Similarity=0.519 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHcCC
Q psy8573 16 QTVREILLAAEELNM 30 (123)
Q Consensus 16 ~~~R~lmlaA~~~Gm 30 (123)
+.+|.+|..|+++|.
T Consensus 3 ~~Q~e~L~~A~~~GY 17 (53)
T PF04967_consen 3 DRQREILKAAYELGY 17 (53)
T ss_pred HHHHHHHHHHHHcCC
Confidence 457899999999996
No 97
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=22.64 E-value=1.4e+02 Score=20.99 Aligned_cols=25 Identities=24% Similarity=0.574 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEee
Q psy8573 17 TVREILLAAEELNMIDSGEYVFFNIE 42 (123)
Q Consensus 17 ~~R~lmlaA~~~Gm~~~geYVFi~id 42 (123)
+-++-..+|.++|+ +.|.-+||-+|
T Consensus 78 dA~~A~~~A~~lG~-p~gt~IYfavD 102 (136)
T PF08924_consen 78 DARDAVAAARALGF-PAGTPIYFAVD 102 (136)
T ss_dssp HHHHHHHHHHHTT---SS-EEEEE--
T ss_pred HHHHHHHHHHHcCC-CCCCEEEEEee
Confidence 55777888899998 89999999999
No 98
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=22.17 E-value=2.7e+02 Score=21.40 Aligned_cols=27 Identities=7% Similarity=-0.077 Sum_probs=21.7
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
....+|+++..+...-.++.++.+.|+
T Consensus 186 ~~~d~v~~~~~~~~~~~~~~~~~~~g~ 212 (333)
T cd06331 186 AGPDVVLSTLVGDSNVAFYRQFAAAGL 212 (333)
T ss_pred cCCCEEEEecCCCChHHHHHHHHHcCC
Confidence 355678888877766789999999998
No 99
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=21.99 E-value=1.1e+02 Score=22.24 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=20.0
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
...+||++..+.....++.++++.|+
T Consensus 190 ~~~~vi~~~~~~~~~~~~~~~~~~g~ 215 (298)
T cd06268 190 GPDAVFLAGYGGDAALFLKQAREAGL 215 (298)
T ss_pred CCCEEEEccccchHHHHHHHHHHcCC
Confidence 34677777776777889999999885
No 100
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=21.74 E-value=1.6e+02 Score=17.51 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=16.8
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
....||+.|..+..........++.|.
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~G~ 75 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKAGG 75 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHhCc
Confidence 345688888776555555555566663
No 101
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=21.62 E-value=1.6e+02 Score=18.23 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=14.0
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELN 29 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~G 29 (123)
...+||+.|.++...........+.|
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G 75 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNG 75 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCC
Confidence 34578888876543333333334555
No 102
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=21.33 E-value=1.4e+02 Score=22.00 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=20.9
Q ss_pred ceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 6 VAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 6 ~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
...|++|.++..++.+...+.+.|+
T Consensus 206 ~~~v~icGp~~mv~~v~~~l~~~G~ 230 (241)
T cd06214 206 FDEAFLCGPEPMMDAVEAALLELGV 230 (241)
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCC
Confidence 3579999999988888888888886
No 103
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=21.15 E-value=1.7e+02 Score=19.53 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=16.1
Q ss_pred ceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 6 VAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 6 ~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
.+||+.|.++...........+.|.
T Consensus 61 ~~IVlyC~~G~rS~~aa~~L~~~G~ 85 (104)
T PRK10287 61 DTVKLYCNAGRQSGQAKEILSEMGY 85 (104)
T ss_pred CeEEEEeCCChHHHHHHHHHHHcCC
Confidence 4588888776544444555566786
No 104
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=20.30 E-value=1.9e+02 Score=22.18 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=28.0
Q ss_pred eEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecc
Q psy8573 7 AVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELF 44 (123)
Q Consensus 7 RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~ 44 (123)
..|++|.++..+..+.....+.|+ +.+-++..++..
T Consensus 191 ~~v~lCGp~~mv~~~~~~L~~~Gv--~~~~i~~~~~~~ 226 (261)
T TIGR02911 191 VQAIVVGPPIMMKFTVQELLKKGI--KEENIWVSYERK 226 (261)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCC--CHHHEEEEeccc
Confidence 469999999877777777777896 577778777765
No 105
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.23 E-value=29 Score=30.51 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=20.3
Q ss_pred EEEEEcChHHHHHHHHHHHHcCCCCCCcEE
Q psy8573 8 VVVLCANPQTVREILLAAEELNMIDSGEYV 37 (123)
Q Consensus 8 VVilC~~~~~~R~lmlaA~~~Gm~~~geYV 37 (123)
|+++|++.+---.++++|.++|+ +..+||
T Consensus 45 v~fvtGtDeHGt~I~~~A~~~g~-tP~el~ 73 (558)
T COG0143 45 VFFLTGTDEHGTKIELKAEKEGI-TPQELV 73 (558)
T ss_pred EEEEeccCCCCCHHHHHHHHcCC-CHHHHH
Confidence 67777777655667788888886 566553
No 106
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=20.22 E-value=2.9e+02 Score=20.40 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=28.2
Q ss_pred EEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeec
Q psy8573 8 VVVLCANPQTVREILLAAEELNMIDSGEYVFFNIEL 43 (123)
Q Consensus 8 VVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~ 43 (123)
..|+|+++.....+|.++++.|+...++...+-.|-
T Consensus 181 ~ai~~~~d~~a~g~~~~l~~~g~~vp~di~v~g~d~ 216 (270)
T cd01544 181 TAFFIASDPMAIGALRALQEAGIKVPEDVSVISFND 216 (270)
T ss_pred CEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 478888888888899999999974467877777774
Done!