Query psy8573
Match_columns 123
No_of_seqs 104 out of 219
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 22:17:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dp4_A Atrial natriuretic pept 98.4 2.2E-06 7.6E-11 67.6 9.4 95 5-103 206-305 (435)
2 1jdp_A NPR-C, atrial natriuret 98.3 4.4E-06 1.5E-10 66.3 9.9 92 4-100 210-301 (441)
3 4f11_A Gamma-aminobutyric acid 97.4 0.00056 1.9E-08 53.9 8.5 87 4-98 205-304 (433)
4 4gpa_A Glutamate receptor 4; P 97.1 0.00074 2.5E-08 51.7 5.7 81 4-100 183-263 (389)
5 3saj_A Glutamate receptor 1; r 97.0 0.0022 7.4E-08 50.0 7.2 86 3-104 180-265 (384)
6 3o21_A Glutamate receptor 3; p 96.9 0.0013 4.3E-08 51.7 5.7 83 4-102 184-266 (389)
7 3qel_B Glutamate [NMDA] recept 96.5 0.0025 8.4E-08 50.1 4.5 40 3-43 192-231 (364)
8 3om0_A Glutamate receptor, ion 96.2 0.019 6.5E-07 44.5 7.8 39 4-43 190-228 (393)
9 3qek_A NMDA glutamate receptor 95.9 0.0094 3.2E-07 46.1 4.9 42 3-45 213-254 (384)
10 3hsy_A Glutamate receptor 2; l 95.9 0.013 4.5E-07 45.4 5.6 38 4-42 178-215 (376)
11 3kg2_A Glutamate receptor 2; I 95.7 0.023 7.9E-07 48.2 7.0 39 4-43 178-216 (823)
12 3h6g_A Glutamate receptor, ion 94.2 0.059 2E-06 41.6 5.0 38 4-42 190-227 (395)
13 3ks9_A Mglur1, metabotropic gl 93.9 0.057 1.9E-06 43.9 4.5 77 4-96 255-331 (496)
14 2e4u_A Metabotropic glutamate 93.7 0.094 3.2E-06 43.0 5.4 35 4-42 243-277 (555)
15 3mq4_A Mglur7, metabotropic gl 93.3 0.017 6E-07 46.6 0.4 39 4-44 246-284 (481)
16 3sm9_A Mglur3, metabotropic gl 93.2 0.053 1.8E-06 43.9 3.1 37 4-44 242-278 (479)
17 3i45_A Twin-arginine transloca 58.6 9.5 0.00033 28.8 3.8 34 4-38 198-231 (387)
18 3td9_A Branched chain amino ac 53.7 30 0.001 25.6 5.9 27 4-30 203-229 (366)
19 4gnr_A ABC transporter substra 47.4 20 0.00069 26.5 4.0 27 4-30 195-221 (353)
20 3ipc_A ABC transporter, substr 46.5 18 0.00062 26.7 3.6 27 4-30 192-218 (356)
21 3i09_A Periplasmic branched-ch 46.1 24 0.00083 26.3 4.3 37 4-42 194-230 (375)
22 2x5q_A SSO1986; unknown functi 44.8 7.9 0.00027 28.2 1.2 9 34-42 9-17 (198)
23 3a1f_A Cytochrome B-245 heavy 42.3 56 0.0019 21.7 5.4 35 7-42 148-184 (186)
24 3n0w_A ABC branched chain amin 41.8 27 0.00093 26.1 4.0 37 4-41 196-232 (379)
25 4eyg_A Twin-arginine transloca 40.0 17 0.00057 26.9 2.5 37 5-42 194-230 (368)
26 3g14_A Nitroreductase family p 39.3 32 0.0011 23.9 3.8 13 18-30 108-120 (193)
27 2ba3_A NIKA; dimer, bacterial 38.1 14 0.0005 20.4 1.5 31 5-36 14-44 (51)
28 3lop_A Substrate binding perip 33.8 40 0.0014 25.0 3.7 27 4-30 195-221 (364)
29 2k0z_A Uncharacterized protein 31.8 88 0.003 19.4 4.7 27 4-30 55-81 (110)
30 2jtq_A Phage shock protein E; 30.6 84 0.0029 18.4 4.3 26 5-30 41-66 (85)
31 1tvc_A Methane monooxygenase c 30.5 82 0.0028 22.3 4.9 35 7-45 211-245 (250)
32 3kwk_A Putative NADH dehydroge 30.3 29 0.001 23.6 2.3 13 18-30 105-117 (175)
33 3lkb_A Probable branched-chain 29.8 50 0.0017 24.7 3.7 27 4-30 197-223 (392)
34 3e10_A Putative NADH oxidase; 29.8 42 0.0014 22.5 3.0 13 18-30 97-109 (168)
35 1usg_A Leucine-specific bindin 28.4 57 0.0019 23.6 3.7 27 4-30 192-218 (346)
36 3eaf_A ABC transporter, substr 28.1 52 0.0018 24.6 3.6 27 4-30 198-224 (391)
37 3gfa_A Putative nitroreductase 27.6 64 0.0022 21.9 3.7 13 18-30 133-145 (198)
38 4evq_A Putative ABC transporte 27.0 52 0.0018 24.2 3.3 26 5-30 206-231 (375)
39 4dn2_A Nitroreductase; structu 26.8 48 0.0017 23.2 3.0 13 18-30 138-150 (208)
40 2r6h_A NADH:ubiquinone oxidore 26.4 86 0.0029 22.7 4.4 28 7-35 256-283 (290)
41 3lrx_A Putative hydrogenase; a 25.9 78 0.0027 21.3 3.9 34 7-45 114-147 (158)
42 3ek3_A Nitroreductase; YP_2117 25.4 95 0.0032 21.0 4.3 24 7-30 96-129 (190)
43 3pxv_A Nitroreductase; flavopr 24.7 76 0.0026 21.5 3.7 24 7-30 95-129 (189)
44 3hut_A Putative branched-chain 24.4 62 0.0021 23.7 3.3 26 5-30 194-219 (358)
45 3hix_A ALR3790 protein; rhodan 24.4 1.1E+02 0.0038 18.8 4.1 26 5-30 52-77 (106)
46 3snr_A Extracellular ligand-bi 24.0 65 0.0022 23.4 3.4 26 5-30 190-215 (362)
47 3nbm_A PTS system, lactose-spe 23.8 86 0.0029 20.3 3.6 26 5-30 6-35 (108)
48 4eh1_A Flavohemoprotein; struc 23.6 86 0.0029 22.0 3.9 37 5-45 200-236 (243)
49 3h5l_A Putative branched-chain 23.5 47 0.0016 25.2 2.6 27 4-30 218-245 (419)
50 4fk8_A Ferredoxin--NADP reduct 23.0 1.3E+02 0.0043 21.6 4.7 25 6-30 228-252 (271)
51 1krh_A Benzoate 1,2-dioxygenas 21.6 1E+02 0.0035 23.0 4.1 35 7-45 302-336 (338)
52 8abp_A L-arabinose-binding pro 21.5 1.4E+02 0.0046 21.2 4.6 37 8-45 199-235 (306)
No 1
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=98.35 E-value=2.2e-06 Score=67.57 Aligned_cols=95 Identities=25% Similarity=0.496 Sum_probs=71.6
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCC---CC--CCCcccCCCCchhhHHHHHHHHHhhhhc
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNA---AS--LTPWYVHNDTDVRNERARKAYTALLTVT 79 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~---~~--~~~W~~~~~~~~~d~~ar~Ay~svl~It 79 (123)
.+||||+|+..+..+.++.+|+++|| +.++|+||..+.+..+.. .+ ..+|... . .....+.++++.+++++
T Consensus 206 ~~~viv~~~~~~~~~~~~~~a~~~g~-~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~-~--~~~~~~~~~~~~~~~~~ 281 (435)
T 1dp4_A 206 KGRVIYICSSPDAFRNLMLLALNAGL-TGEDYVFFHLDVFGQSLKSAQGLVPQKPWERG-D--GQDRSARQAFQAAKIIT 281 (435)
T ss_dssp HCSEEEEESCHHHHHHHHHHHHHTTC-CTTTCEEEEECTTCTTSCSSCTTSCBCTTCCS-S--SCHHHHHHHGGGEEEEE
T ss_pred hCceEEEecChHHHHHHHHHHHHcCC-CCCCEEEEEEecccccccccccccccCCcccC-C--cchHHHHHHhheeEEEe
Confidence 57999999999999999999999998 677899999987654321 00 1356531 2 23446778888988888
Q ss_pred ccCCCChhHHHHHHHHHHhhcccc
Q psy8573 80 ARTPNNEAYRNFSSELLSAVLPIL 103 (123)
Q Consensus 80 ~~~p~~~~y~~F~~~v~~~~~~~~ 103 (123)
...|.++.+++|.++.+++...++
T Consensus 282 ~~~~~~~~~~~f~~~~~~~~~~~~ 305 (435)
T 1dp4_A 282 YKEPDNPEYLEFLKQLKLLADKKF 305 (435)
T ss_dssp ECCCCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCChhHHHHHHHHHHHhcCCC
Confidence 877889999999999887765433
No 2
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=98.29 E-value=4.4e-06 Score=66.31 Aligned_cols=92 Identities=38% Similarity=0.581 Sum_probs=69.9
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTP 83 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~p 83 (123)
+.+||||+|+..++.+.+|.+|+++|| +...|+||..+.+..+.+ +...|...+ ..+..++++++.+..++...+
T Consensus 210 ~~~~vii~~~~~~~~~~~~~~~~~~gl-~~~~~v~i~~~~~~~~~~-~~~~w~~~~---~~~~~~~~~~~~~~g~~~~~~ 284 (441)
T 1jdp_A 210 ASERVVIMCASSDTIRSIMLVAHRHGM-TSGDYAFFNIELFNSSSY-GDGSWKRGD---KHDFEAKQAYSSLQTVTLLRT 284 (441)
T ss_dssp HHCSEEEEESCHHHHHHHHHHHHHTTC-TTTTCEEEEECSSCCCST-TTCTTCCSS---TTHHHHHHHGGGEEEEEECCC
T ss_pred cCCcEEEEecCHHHHHHHHHHHHHcCC-CCCCEEEEEEeccccccc-cCCCCccCC---cccHHHHHHHHhheEEeecCC
Confidence 467999999999999999999999998 566899999997665433 334785321 123345567777777777778
Q ss_pred CChhHHHHHHHHHHhhc
Q psy8573 84 NNEAYRNFSSELLSAVL 100 (123)
Q Consensus 84 ~~~~y~~F~~~v~~~~~ 100 (123)
+.|.+++|.++.+.+.+
T Consensus 285 ~~p~~~~F~~~~~~~~~ 301 (441)
T 1jdp_A 285 VKPEFEKFSMEVKSSVE 301 (441)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHh
Confidence 88999999999987643
No 3
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=97.44 E-value=0.00056 Score=53.85 Aligned_cols=87 Identities=13% Similarity=0.214 Sum_probs=61.1
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccC-----CCCchhhHHHHHHHHHhhhh
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVH-----NDTDVRNERARKAYTALLTV 78 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~-----~~~~~~d~~ar~Ay~svl~I 78 (123)
+.++|||+|+..++.+.++.+|+++|| +.++|+||..+.+.. .|... ...+.....+.++++.++.+
T Consensus 205 ~~~~vii~~~~~~~~~~~~~~a~~~g~-~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 276 (433)
T 4f11_A 205 NDVRIILGQFDQNMAAKVFCCAYEENM-YGSKYQWIIPGWYEP-------SWWEQVHTEANSSRCLRKNLLAAMEGYIGV 276 (433)
T ss_dssp TTCCEEEEECCHHHHHHHHHHHHHTTC-CSTTCEEEEESCSCT-------TTTTCC------CCSCHHHHHHHHTTCEEE
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHcCC-CCCCeEEEEcCcchH-------hHhcccccCCCCCCCCHHHHHHHHhCEEEE
Confidence 578999999999999999999999998 677899999887542 35310 10111233566788888887
Q ss_pred cccCCCC--------hhHHHHHHHHHHh
Q psy8573 79 TARTPNN--------EAYRNFSSELLSA 98 (123)
Q Consensus 79 t~~~p~~--------~~y~~F~~~v~~~ 98 (123)
+...+.+ +..++|.++-+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~f~~~y~~~ 304 (433)
T 4f11_A 277 DFEPLSSKQIKTISGKTPQQYEREYNNK 304 (433)
T ss_dssp EECSSCCCCCCCTTSCCHHHHHHHHHHH
T ss_pred EEeecCCCCCcccCCCCHHHHHHHHHHh
Confidence 7655432 3477788777654
No 4
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=97.11 E-value=0.00074 Score=51.67 Aligned_cols=81 Identities=10% Similarity=-0.063 Sum_probs=56.8
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTP 83 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~p 83 (123)
+.+||||+++..++.+.+|.+|.++|| +...|+||..+..... .| ...+..+...+..+....+
T Consensus 183 ~~~~vIv~~~~~~~~~~il~~a~~~g~-~~~~~~~i~~~~~~~~------~~---------~~~~~~~~~~i~~~~~~~~ 246 (389)
T 4gpa_A 183 RQEKKFVIDCEIERLQNILEQIVSVGK-HVKGYHYIIANLGFKD------IS---------LERFIHGGANVTGFQLVDF 246 (389)
T ss_dssp HTCCEEEEECCHHHHHHHHHHHHHHTC-SBTTCEEEECSSBGGG------SC---------CHHHHHHBCEEEEEECSCT
T ss_pred cCCcEEEEEechhHHHHHHHHHHHhCC-CCCceEEEEeCccccc------hh---------hhhhhhcccceEEEEeecC
Confidence 467899999999999999999999999 6889999875532110 11 1133344444555666677
Q ss_pred CChhHHHHHHHHHHhhc
Q psy8573 84 NNEAYRNFSSELLSAVL 100 (123)
Q Consensus 84 ~~~~y~~F~~~v~~~~~ 100 (123)
.++.+++|.+..++...
T Consensus 247 ~~~~~~~f~~~~~~~~~ 263 (389)
T 4gpa_A 247 NTPMVTKLMDRWKKLDQ 263 (389)
T ss_dssp TSHHHHHHHHHHTTSCT
T ss_pred CChHHHHHHHHHHHHhh
Confidence 88888888877764433
No 5
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=96.96 E-value=0.0022 Score=49.95 Aligned_cols=86 Identities=9% Similarity=0.044 Sum_probs=55.3
Q ss_pred cccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccC
Q psy8573 3 NFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTART 82 (123)
Q Consensus 3 ~~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~ 82 (123)
++.++|||+++..++...++.+|.++|| +...|+||.-+.- |. .. +- ..+......+..+....
T Consensus 180 ~~~~~vii~~~~~~~~~~~~~qa~~~g~-~~~~~~~i~~~~~----------~~--~~-~~--~~~~~~~~~v~~~~~~~ 243 (384)
T 3saj_A 180 KKKERLVVVDCESERLNAILGQIVKLEK-NGIGYHYILANLG----------FM--DI-DL--NKFKESGANVTGFQLVN 243 (384)
T ss_dssp SCSEEEEEEECCGGGHHHHHHHHHHTCC-TTCEEEEEESSSC----------GG--GS-CH--HHHHHTTCCEEEEECCC
T ss_pred ccCCcEEEEEcCHHHHHHHHHHHHHcCC-CCCCcEEEEECCC----------cc--cc-cH--HHhhCCCcceEEEEeec
Confidence 3578999999999999999999999998 6778999866521 11 11 00 01111111234444556
Q ss_pred CCChhHHHHHHHHHHhhccccC
Q psy8573 83 PNNEAYRNFSSELLSAVLPILD 104 (123)
Q Consensus 83 p~~~~y~~F~~~v~~~~~~~~~ 104 (123)
|.+|.+++|.++-+++...+++
T Consensus 244 ~~~~~~~~F~~~~~~~~~~~~p 265 (384)
T 3saj_A 244 YTDTIPARIMQQWRTSDSRDHT 265 (384)
T ss_dssp TTSHHHHHHHHHHHHHHHHC--
T ss_pred CCChHHHHHHHHHHhcCccccC
Confidence 6778888888888776655544
No 6
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=96.93 E-value=0.0013 Score=51.73 Aligned_cols=83 Identities=11% Similarity=0.033 Sum_probs=52.9
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTP 83 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~p 83 (123)
+.++|||+++..+..+.|+.+|.++|| +...|+||.-+. |...... . ....+...+..+....|
T Consensus 184 ~~~~vii~~~~~~~~~~i~~qa~~~g~-~~~~~~~i~~~~-----------~~~~~~~--~--~~~~~~~~~~~~~~~~~ 247 (389)
T 3o21_A 184 RQEKRYLIDCEVERINTILEQVVILGK-HSRGYHYMLANL-----------GFTDILL--E--RVMHGGANITGFQIVNN 247 (389)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHCS-CSTTCEEEECCT-----------TGGGCCC--H--HHHHTTCEEEEEESCCT
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCc-ccCCeEEEEccC-----------CcccccH--H--HHhcCCcceEEEEEecC
Confidence 467999999999999999999999998 677899997552 2210000 0 11111112333444456
Q ss_pred CChhHHHHHHHHHHhhccc
Q psy8573 84 NNEAYRNFSSELLSAVLPI 102 (123)
Q Consensus 84 ~~~~y~~F~~~v~~~~~~~ 102 (123)
++|.+++|.++-+++...+
T Consensus 248 ~~~~~~~F~~~~~~~~~~~ 266 (389)
T 3o21_A 248 ENPMVQQFIQRWVRLDERE 266 (389)
T ss_dssp TCHHHHHHHHHHTTSCTTT
T ss_pred CChhHHHHHHHHHhccccc
Confidence 6778888887776544333
No 7
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=96.52 E-value=0.0025 Score=50.09 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=35.6
Q ss_pred cccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeec
Q psy8573 3 NFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIEL 43 (123)
Q Consensus 3 ~~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~ 43 (123)
++.+||||++|+.+..+.++.+|.++|| +..+|+||.-+.
T Consensus 192 ~~~a~ViIv~~~~~~~~~ll~~a~~~g~-~~~~y~wI~t~~ 231 (364)
T 3qel_B 192 KLQSPIILLYCTKEEATYIFEVANSVGL-TGYGYTWIVPSL 231 (364)
T ss_dssp TCCCSEEEEESCHHHHHHHHHHHHTTTC-SSTTCEEEECHH
T ss_pred ccCCcEEEEEcCHHHHHHHHHHHHHcCC-CCCCeEEEEecc
Confidence 3578999999999999999999999998 567799999765
No 8
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=96.18 E-value=0.019 Score=44.49 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=34.1
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeec
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIEL 43 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~ 43 (123)
+.++|||+++..++...++.+|.++|| +...|+||.-+.
T Consensus 190 ~~~~vii~~~~~~~~~~~~~~a~~~g~-~~~~~~~i~~~~ 228 (393)
T 3om0_A 190 DKVSTIIIDANASISHLVLRKASELGM-TSAFYKYILTTM 228 (393)
T ss_dssp HTCSEEEEESCHHHHHHHHHHHHHTTT-TSTTCEEEECCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHcCc-ccCCeEEEEecc
Confidence 467999999999999999999999998 567799997664
No 9
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=95.89 E-value=0.0094 Score=46.10 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=36.8
Q ss_pred cccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 3 NFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 3 ~~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
.+.+||||+|++++....++.+|.++|| +...|+||.-|...
T Consensus 213 ~~~~~vii~~~~~~~~~~~~~~a~~~g~-~~~~~~~i~~~~~~ 254 (384)
T 3qek_A 213 ELEARVIILSASEDDATAVYKSAAMLDM-TGAGYVWLVGEREI 254 (384)
T ss_dssp TSSCCEEEEECCHHHHHHHHHHHHHTTC-SSTTCEEECCSGGG
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHcCC-ccCCeEEEEecccc
Confidence 3678999999999999999999999998 56679999988653
No 10
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=95.85 E-value=0.013 Score=45.37 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=31.9
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEee
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIE 42 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id 42 (123)
+.++|||+++..+....|+.+|.++|| +...|+||.-+
T Consensus 178 ~~~~vii~~~~~~~~~~~~~qa~~~g~-~~~~~~~i~~~ 215 (376)
T 3hsy_A 178 KKERRVILDCERDKVNDIVDQVITIGK-HVKGYHYIIAN 215 (376)
T ss_dssp ---CEEEEESCHHHHHHHHHHHHHHTS-SGGGCEEEECS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHccc-CCCCcEEEEcC
Confidence 467999999999999999999999998 56789999776
No 11
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=95.73 E-value=0.023 Score=48.18 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=34.8
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeec
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIEL 43 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~ 43 (123)
+.+||||+++..+..+.++.+|.++|| +...|+||..+.
T Consensus 178 ~~~~vii~~~~~~~~~~~~~~a~~~g~-~~~~~~~i~~~~ 216 (823)
T 3kg2_A 178 KKERRVILDCERDKVNDIVDQVITIGK-HVKGYHYIIANL 216 (823)
T ss_dssp TTCCEEEEECCHHHHHHHHHHHHHHTT-TBTTCEEEECSS
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHcCc-CCCCeEEEEecc
Confidence 568999999999999999999999998 677899998764
No 12
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=94.23 E-value=0.059 Score=41.60 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=33.7
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEee
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIE 42 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id 42 (123)
+.++|||+++..++...|+.+|.++|| +...|+||...
T Consensus 190 ~~~~vi~~~~~~~~~~~~~~qa~~~gl-~~~~~~~i~~~ 227 (395)
T 3h6g_A 190 GKEFHVIFDCSHEMAAGILKQALAMGM-MTEYYHYIFTT 227 (395)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHTTC-CSTTCEEEECC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHccc-cCCceEEEEec
Confidence 467899999999999999999999999 67889988764
No 13
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=93.93 E-value=0.057 Score=43.94 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=52.2
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTP 83 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~p 83 (123)
+.++|||++++.+..+.++.+|.++|| +|.+++|.-+ .|.. .....+ ....++.-++.++...+
T Consensus 255 ~~a~vii~~~~~~~~~~l~~~~~~~g~--~~k~~~i~s~-----------~w~~--~~~~~~-~~~~~~~G~l~~~~~~~ 318 (496)
T 3ks9_A 255 PKARVVVCFCEGMTVRGLLSAMRRLGV--VGEFSLIGSD-----------GWAD--RDEVIE-GYEVEANGGITIKLQSP 318 (496)
T ss_dssp TTTCEEEEECCHHHHHHHHHHHHHHTC--CSCCEEEECT-----------TTTT--CHHHHT-TCHHHHTTCEEEEECCC
T ss_pred CceEEEEEecChHHHHHHHHHHHHhCC--CCcEEEEEec-----------hhcc--cccccc-ccccccCceEEEeccCC
Confidence 478999999999889999999999997 4777776544 3531 100000 11234556677777777
Q ss_pred CChhHHHHHHHHH
Q psy8573 84 NNEAYRNFSSELL 96 (123)
Q Consensus 84 ~~~~y~~F~~~v~ 96 (123)
+-|.+++|.+.+.
T Consensus 319 ~ipgf~~fl~~~~ 331 (496)
T 3ks9_A 319 EVRSFDDYFLKLR 331 (496)
T ss_dssp CCHHHHHHHTTCC
T ss_pred cCcchHhHhccCC
Confidence 7888888876654
No 14
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=93.65 E-value=0.094 Score=42.98 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=30.6
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEee
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIE 42 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id 42 (123)
+.+||||+++..+..+.||.+|.++|+ +++||..+
T Consensus 243 s~a~vIi~~~~~~~~~~~~~~~~~~g~----~~~~i~s~ 277 (555)
T 2e4u_A 243 PNARVVVLFMRSDDSRELIAAANRVNA----SFTWVASD 277 (555)
T ss_dssp TTCCEEEEECCHHHHHHHHHHHHHTTC----CCEEEECT
T ss_pred CCCCEEEEEcCHHHHHHHHHHHHHhcC----CeEEEEec
Confidence 578999999999999999999999985 68888655
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=93.32 E-value=0.017 Score=46.61 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=20.2
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecc
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELF 44 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~ 44 (123)
+.++|||+++..+..+.++.+|.++|| +|++++|.-+.+
T Consensus 246 s~a~vIi~~~~~~~~~~l~~~~~~~g~--~~~~~wI~s~~w 284 (481)
T 3mq4_A 246 PNSRAVVIFANDEDIKQILAAAKRADQ--VGHFLWVGSDSW 284 (481)
T ss_dssp ----CEEECCCSSHHHHHC------------CCCEEEC---
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHccC--CcceEEEEECcc
Confidence 578999999999999999999999997 467899876644
No 16
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=93.17 E-value=0.053 Score=43.93 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=32.4
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecc
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELF 44 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~ 44 (123)
+.++|||+++..++.+.++.+|.++|| + ++||.-+..
T Consensus 242 s~a~vIi~~~~~~~~~~l~~~~~~~g~-~---~~wI~s~~w 278 (479)
T 3sm9_A 242 PNARVVVLFMRSDDSRELIAAASRANA-S---FTWVASDGW 278 (479)
T ss_dssp TTCCEEEEECCHHHHHHHHHHHHHTTC-C---CEEEECTTT
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHhCC-E---EEEEEechh
Confidence 578999999999999999999999997 4 888876644
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=58.61 E-value=9.5 Score=28.79 Aligned_cols=34 Identities=6% Similarity=-0.059 Sum_probs=27.0
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEE
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVF 38 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVF 38 (123)
+..++|++|+.+.....++.+|.+.|| ..+-+++
T Consensus 198 ~~~d~v~~~~~~~~~~~~~~~~~~~g~-~~~~~i~ 231 (387)
T 3i45_A 198 AEPEGLFNVLFGADLPKFVREGRVRGL-FAGRQVV 231 (387)
T ss_dssp TCCSEEEECCCTTHHHHHHHHHHHHTS-STTCEEE
T ss_pred CCCCEEEEcCccHHHHHHHHHHHHcCC-CCCCeEE
Confidence 456789999888888999999999998 5554443
No 18
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=53.66 E-value=30 Score=25.61 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=23.0
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
....+|++++.+.....++.++.+.|+
T Consensus 203 ~~~d~v~~~~~~~~a~~~~~~~~~~g~ 229 (366)
T 3td9_A 203 FNPDAIYITGYYPEIALISRQARQLGF 229 (366)
T ss_dssp TCCSEEEECSCHHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEccchhHHHHHHHHHHHcCC
Confidence 346788888888888999999999997
No 19
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=47.38 E-value=20 Score=26.48 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=24.6
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
+..++|++++.+.+...++.++.++|+
T Consensus 195 ~~~d~v~~~~~~~~~~~~~~~~~~~g~ 221 (353)
T 4gnr_A 195 KDFDAIVVPGYYNEAGKIVNQARGMGI 221 (353)
T ss_dssp SCCSEEECCSCHHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence 567899999999999999999999997
No 20
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=46.46 E-value=18 Score=26.65 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=23.7
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
....+|++|+.......+|.++.+.|+
T Consensus 192 ~~~d~v~~~~~~~~a~~~~~~~~~~g~ 218 (356)
T 3ipc_A 192 AGVSIIYWGGLHTEAGLIIRQAADQGL 218 (356)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHTC
T ss_pred cCCCEEEEccCchHHHHHHHHHHHCCC
Confidence 356789999999888899999999997
No 21
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=46.13 E-value=24 Score=26.27 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=27.7
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEee
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIE 42 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id 42 (123)
+...+|++++...+...++.++.+.|+ .... .++-.+
T Consensus 194 ~~~d~v~~~~~~~~~~~~~~~~~~~g~-~~~~-~i~g~~ 230 (375)
T 3i09_A 194 SKAQILGLANAGGDTVNAIKAAKEFGI-TKTM-KLAALL 230 (375)
T ss_dssp TCCSEEEEECCHHHHHHHHHHHHHTTG-GGTC-EEEESS
T ss_pred CCCCEEEEecCchhHHHHHHHHHHcCC-CcCc-eEEecc
Confidence 456788888888888899999999998 4444 444444
No 22
>2x5q_A SSO1986; unknown function; 2.05A {Sulfolobus solfataricus}
Probab=44.78 E-value=7.9 Score=28.17 Aligned_cols=9 Identities=44% Similarity=0.611 Sum_probs=7.4
Q ss_pred CcEEEEEee
Q psy8573 34 GEYVFFNIE 42 (123)
Q Consensus 34 geYVFi~id 42 (123)
.|||||++-
T Consensus 9 ~E~VFiPii 17 (198)
T 2x5q_A 9 EEQVFLPIT 17 (198)
T ss_dssp CCEEEEECC
T ss_pred eEEEEEEee
Confidence 499999885
No 23
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=42.26 E-value=56 Score=21.71 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=23.7
Q ss_pred eEEEEEcChHHHHHHHHHHHHcCCCC--CCcEEEEEee
Q psy8573 7 AVVVLCANPQTVREILLAAEELNMID--SGEYVFFNIE 42 (123)
Q Consensus 7 RVVilC~~~~~~R~lmlaA~~~Gm~~--~geYVFi~id 42 (123)
..|++|.++...+.+..++.+.|. . ++--+.+.-|
T Consensus 148 ~~v~~CGP~~m~~~v~~~l~~~g~-~~~~~~~~~~~~E 184 (186)
T 3a1f_A 148 IGVFLCGPEALAETLSKQSISNSE-SGPRGVHFIFNKE 184 (186)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTCC-CSTTCCEEEEECC
T ss_pred EEEEEeCCHHHHHHHHHHHHHhhc-cCCCCCEEEEEec
Confidence 458899998877777777778885 3 3434544444
No 24
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=41.82 E-value=27 Score=26.10 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=27.3
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEe
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNI 41 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~i 41 (123)
+...+|++++.......++.++.++|+ ....+++...
T Consensus 196 ~~~d~v~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~ 232 (379)
T 3n0w_A 196 SGAQLIVSTSGGAANINIMKQAREFGL-PSKTQKVGGM 232 (379)
T ss_dssp HTCSEEEECCCHHHHHHHHHHHHHTTC-SCSSCEEECC
T ss_pred CCCCEEEEecccchHHHHHHHHHHcCC-CCCCcEEEec
Confidence 356788888888888899999999998 4333554433
No 25
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=40.01 E-value=17 Score=26.92 Aligned_cols=37 Identities=5% Similarity=0.001 Sum_probs=27.9
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEee
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIE 42 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id 42 (123)
...+|++++.+.....++.++.++|+ ...++.++-.+
T Consensus 194 ~~d~v~~~~~~~~a~~~~~~~~~~g~-~~~~v~~~~~~ 230 (368)
T 4eyg_A 194 KPDAMFVFVPAGQGGNFMKQFAERGL-DKSGIKVIGPG 230 (368)
T ss_dssp CCSEEEEECCTTCHHHHHHHHHHTTG-GGTTCEEEEET
T ss_pred CCCEEEEeccchHHHHHHHHHHHcCC-CcCCceEEecC
Confidence 45678877777788899999999998 44446666555
No 26
>3g14_A Nitroreductase family protein; structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: MSE; 1.75A {Clostridium novyi}
Probab=39.26 E-value=32 Score=23.85 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCC
Q psy8573 18 VREILLAAEELNM 30 (123)
Q Consensus 18 ~R~lmlaA~~~Gm 30 (123)
.-++||+|+.+|+
T Consensus 108 ~~nl~LaA~~~Gl 120 (193)
T 3g14_A 108 MEHIVLGATDEGY 120 (193)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 4679999999997
No 27
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=38.07 E-value=14 Score=20.42 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=24.5
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCCCCCCcE
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNMIDSGEY 36 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geY 36 (123)
+..+|-+-+++++...|-..|...|| +-.+|
T Consensus 14 r~~~i~vRlt~eE~~~l~~~A~~~g~-s~Sey 44 (51)
T 2ba3_A 14 KTVVRTLRFSPVEDETIRKKAEDSGL-TVSAY 44 (51)
T ss_dssp CSEEEEEEECHHHHHHHHHHHHHHTC-CHHHH
T ss_pred CceeEEEEECHHHHHHHHHHHHHhCC-CHHHH
Confidence 44567777889999999999999998 55555
No 28
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=33.77 E-value=40 Score=24.95 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=23.2
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
....+|++|+.......++.++.++|+
T Consensus 195 ~~~d~v~~~~~~~~a~~~~~~~~~~g~ 221 (364)
T 3lop_A 195 ADVQAIFLGATAEPAAQFVRQYRARGG 221 (364)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence 356788888888888999999999997
No 29
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=31.82 E-value=88 Score=19.40 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=16.6
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
....||+.|.++...........++|.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~ 81 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGY 81 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCC
Confidence 345689999776533334444456786
No 30
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=30.56 E-value=84 Score=18.35 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=16.7
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
...||+.|.++...........++|.
T Consensus 41 ~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 41 NDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred CCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 45689999876544444444566786
No 31
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=30.54 E-value=82 Score=22.31 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=25.0
Q ss_pred eEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 7 AVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 7 RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
..|++|+++...+.+...+.+.|+ ..+. |..|.|.
T Consensus 211 ~~vyvCGp~~m~~~v~~~l~~~G~-~~~~---i~~e~F~ 245 (250)
T 1tvc_A 211 PDIYLCGPPGMIDAACELVRSRGI-PGEQ---VFFEKFL 245 (250)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHCC-CCSE---EEECCCS
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCC-CHHH---EEEEecc
Confidence 468999999877777777778897 5443 4456554
No 32
>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur genomics, joint center for structural genomics, JCSG; HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron vpi-5482}
Probab=30.33 E-value=29 Score=23.63 Aligned_cols=13 Identities=46% Similarity=0.746 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCC
Q psy8573 18 VREILLAAEELNM 30 (123)
Q Consensus 18 ~R~lmlaA~~~Gm 30 (123)
.-++||+|+.+|+
T Consensus 105 ~~nl~LaA~~~Gl 117 (175)
T 3kwk_A 105 AQNILLAAESMGL 117 (175)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 5779999999997
No 33
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=29.85 E-value=50 Score=24.66 Aligned_cols=27 Identities=30% Similarity=0.252 Sum_probs=23.3
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
....+|++|+.......++.++.++|+
T Consensus 197 ~~~dav~~~~~~~~a~~~~~~~~~~g~ 223 (392)
T 3lkb_A 197 AGVEYVVHQNVAGPVANILKDAKRLGL 223 (392)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEecCcchHHHHHHHHHHcCC
Confidence 346788888998889999999999997
No 34
>3e10_A Putative NADH oxidase; NP_348178.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE FMN EPE; 1.40A {Clostridium acetobutylicum}
Probab=29.78 E-value=42 Score=22.49 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcCC
Q psy8573 18 VREILLAAEELNM 30 (123)
Q Consensus 18 ~R~lmlaA~~~Gm 30 (123)
.-++||+|+.+|+
T Consensus 97 ~~~l~LaA~~~Gl 109 (168)
T 3e10_A 97 AENILLEAAYLDL 109 (168)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 4779999999997
No 35
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=28.43 E-value=57 Score=23.64 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=22.0
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
....+|++++.+.....++.++.++|+
T Consensus 192 ~~~d~i~~~~~~~~a~~~~~~~~~~g~ 218 (346)
T 1usg_A 192 ENIDFVYYGGYYPEMGQMLRQARSVGL 218 (346)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEcCcchHHHHHHHHHHHcCC
Confidence 346788888777777889999999997
No 36
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=28.06 E-value=52 Score=24.65 Aligned_cols=27 Identities=7% Similarity=-0.087 Sum_probs=23.2
Q ss_pred ccceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
....+|++++.......++.++.++|+
T Consensus 198 ~~~dav~~~~~~~~~~~~~~~~~~~g~ 224 (391)
T 3eaf_A 198 ADPDYVWCGNTISSCSLLGRAMAKVGL 224 (391)
T ss_dssp TCCSEEEECSCHHHHHHHHHHHHHHTC
T ss_pred cCCCEEEEecCcHHHHHHHHHHHHCCC
Confidence 456788888888888999999999997
No 37
>3gfa_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile 630}
Probab=27.60 E-value=64 Score=21.90 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcCC
Q psy8573 18 VREILLAAEELNM 30 (123)
Q Consensus 18 ~R~lmlaA~~~Gm 30 (123)
.-++||+|+.+|+
T Consensus 133 ~~nl~LaA~~~Gl 145 (198)
T 3gfa_A 133 IQNMSLTAVELGL 145 (198)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 4679999999997
No 38
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=26.99 E-value=52 Score=24.24 Aligned_cols=26 Identities=8% Similarity=-0.037 Sum_probs=22.4
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
...+|++++++.....+|.+++++|+
T Consensus 206 ~~dai~~~~~~~~a~~~~~~~~~~g~ 231 (375)
T 4evq_A 206 KPDCVYAFFSGGGALKFIKDYAAANL 231 (375)
T ss_dssp CCSEEEEECCTHHHHHHHHHHHHTTC
T ss_pred CCCEEEEecCcchHHHHHHHHHHcCC
Confidence 45678887888888999999999997
No 39
>4dn2_A Nitroreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc; HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A*
Probab=26.78 E-value=48 Score=23.21 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCC
Q psy8573 18 VREILLAAEELNM 30 (123)
Q Consensus 18 ~R~lmlaA~~~Gm 30 (123)
.-++||+|+.+|+
T Consensus 138 ~~nl~LaA~~~Gl 150 (208)
T 4dn2_A 138 AQNLMLAAHDLGL 150 (208)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 5789999999997
No 40
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=26.41 E-value=86 Score=22.68 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=20.6
Q ss_pred eEEEEEcChHHHHHHHHHHHHcCCCCCCc
Q psy8573 7 AVVVLCANPQTVREILLAAEELNMIDSGE 35 (123)
Q Consensus 7 RVVilC~~~~~~R~lmlaA~~~Gm~~~ge 35 (123)
..|++|+++...+.+...+.+.|+ ..+.
T Consensus 256 ~~vyvCGp~~m~~~v~~~l~~~G~-~~~~ 283 (290)
T 2r6h_A 256 IEYYMCGPGPMANAVKGMLENLGV-PRNM 283 (290)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTC-CGGG
T ss_pred cEEEEECCHHHHHHHHHHHHHcCC-CHHH
Confidence 468999998877777777777896 4443
No 41
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=25.91 E-value=78 Score=21.25 Aligned_cols=34 Identities=6% Similarity=0.171 Sum_probs=23.7
Q ss_pred eEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 7 AVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 7 RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
..|++|.++...+.....+.+.|. . .++.+|.+.
T Consensus 114 ~~vy~CGP~~mm~~v~~~l~~~Gv-~----~~vslE~~M 147 (158)
T 3lrx_A 114 DLVFMVGPVGDQKQVFEVVKEYGV-P----MKVDLHPIM 147 (158)
T ss_dssp SEEEEESCHHHHHHHHHHHGGGTC-C----EEECC----
T ss_pred CEEEEECCHHHHHHHHHHHHHcCC-C----EEEEeeHHh
Confidence 468999999888888888888896 3 566666554
No 42
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc 9343}
Probab=25.43 E-value=95 Score=21.00 Aligned_cols=24 Identities=25% Similarity=0.636 Sum_probs=17.4
Q ss_pred eEEEEEcChH----------HHHHHHHHHHHcCC
Q psy8573 7 AVVVLCANPQ----------TVREILLAAEELNM 30 (123)
Q Consensus 7 RVVilC~~~~----------~~R~lmlaA~~~Gm 30 (123)
-+|++|++.+ ..-++||+|+.+|+
T Consensus 96 ~~i~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Gl 129 (190)
T 3ek3_A 96 TLVIVSNEPKQWWAGMDCACAIENMFLAATSLGI 129 (190)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEecCCCCccHhHHHHHHHHHHHHHHHCCC
Confidence 3566666531 46789999999997
No 43
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for structural genomics, protein structure initiative, PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium hafniense}
Probab=24.75 E-value=76 Score=21.50 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=17.4
Q ss_pred eEEEEEcChH-----------HHHHHHHHHHHcCC
Q psy8573 7 AVVVLCANPQ-----------TVREILLAAEELNM 30 (123)
Q Consensus 7 RVVilC~~~~-----------~~R~lmlaA~~~Gm 30 (123)
-+|++|++.+ ..-+++|+|+.+|+
T Consensus 95 ~~ivv~~~~~~~~~~~~d~g~a~~nl~LaA~~~Gl 129 (189)
T 3pxv_A 95 CMIVVPIDPTQYGPALVDCGILCQTIALAATSLGI 129 (189)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEecCCCCcchhhhHHHHHHHHHHHHHHCCC
Confidence 3667776642 24679999999997
No 44
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=24.45 E-value=62 Score=23.67 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=22.1
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
...+|++|++......+|.++.+.|+
T Consensus 194 ~~d~i~~~~~~~~a~~~~~~~~~~g~ 219 (358)
T 3hut_A 194 APQAIYLAMAYEDAAPFLRALRARGS 219 (358)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEccCchHHHHHHHHHHHcCC
Confidence 45678888888788899999999997
No 45
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=24.40 E-value=1.1e+02 Score=18.78 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=16.4
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
...||+.|.++...........+.|.
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~ 77 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGF 77 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCC
Confidence 34688888876544444445566785
No 46
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=23.99 E-value=65 Score=23.37 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=21.7
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
...+|++|........+|.++.++|+
T Consensus 190 ~~dav~~~~~~~~a~~~~~~~~~~g~ 215 (362)
T 3snr_A 190 NPDAILVGASGTAAALPQTTLRERGY 215 (362)
T ss_dssp CCSEEEEECCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEecCcchHHHHHHHHHHcCC
Confidence 45677777778888999999999997
No 47
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=23.78 E-value=86 Score=20.25 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=17.8
Q ss_pred cceEEEEEcCh---H-HHHHHHHHHHHcCC
Q psy8573 5 SVAVVVLCANP---Q-TVREILLAAEELNM 30 (123)
Q Consensus 5 ~~RVVilC~~~---~-~~R~lmlaA~~~Gm 30 (123)
.-||+++|+.+ . ....+=.+|.+.|+
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi 35 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEV 35 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 45788888764 2 45566677788885
No 48
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=23.62 E-value=86 Score=21.96 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=26.5
Q ss_pred cceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 5 SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 5 ~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
....|++|+++...+.+...+.+.|+ ..+. |..|.|.
T Consensus 200 ~~~~vyvCGp~~m~~~v~~~l~~~g~-~~~~---i~~E~F~ 236 (243)
T 4eh1_A 200 EDGDFYLCGPIGFMQYVVKQLLALGV-DKAR---IHYEVFG 236 (243)
T ss_dssp TTCEEEEEECHHHHHHHHHHHHHHTC-CGGG---EEEEECC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCC-CHHH---EEEeccC
Confidence 34578999999888888777788897 4443 3456654
No 49
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=23.53 E-value=47 Score=25.17 Aligned_cols=27 Identities=19% Similarity=0.001 Sum_probs=22.5
Q ss_pred ccceEEEEEcC-hHHHHHHHHHHHHcCC
Q psy8573 4 FSVAVVVLCAN-PQTVREILLAAEELNM 30 (123)
Q Consensus 4 ~~~RVVilC~~-~~~~R~lmlaA~~~Gm 30 (123)
+..++|++|+. ++....++.++.++|+
T Consensus 218 ~~~d~v~~~~~~~~~~~~~~~~~~~~g~ 245 (419)
T 3h5l_A 218 DPPAVIVVTHFYPQDQALFMNQFMTDPT 245 (419)
T ss_dssp SCCSEEEECCCCHHHHHHHHHHHTTSCC
T ss_pred cCCCEEEEccccCchHHHHHHHHHHcCC
Confidence 46788999865 5788999999999997
No 50
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=22.98 E-value=1.3e+02 Score=21.60 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=20.1
Q ss_pred ceEEEEEcChHHHHHHHHHHHHcCC
Q psy8573 6 VAVVVLCANPQTVREILLAAEELNM 30 (123)
Q Consensus 6 ~RVVilC~~~~~~R~lmlaA~~~Gm 30 (123)
...|++|+++...+.+..++.+.|+
T Consensus 228 ~~~v~vCGp~~m~~~v~~~l~~~gv 252 (271)
T 4fk8_A 228 QDRVMLCGSTAMLKDTTELLKKAGL 252 (271)
T ss_dssp TEEEEEEECHHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCC
Confidence 4578999999877777777778886
No 51
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=21.58 E-value=1e+02 Score=23.03 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=24.0
Q ss_pred eEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 7 AVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 7 RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
..|++|+++...+.+...+.+.|+ .... |..|.|.
T Consensus 302 ~~vy~CGp~~m~~~v~~~l~~~G~-~~~~---i~~e~F~ 336 (338)
T 1krh_A 302 VDVYLCGPVPMVEAVRSWLDTQGI-QPAN---FLFEKFS 336 (338)
T ss_dssp SEEEEEEEHHHHHHHHHHHHHHTC-CCSE---EEEEEEC
T ss_pred cEEEEECCHHHHHHHHHHHHHcCC-CHHH---EEEEeec
Confidence 368999998877777777778897 4443 3445553
No 52
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=21.48 E-value=1.4e+02 Score=21.18 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=28.5
Q ss_pred EEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Q psy8573 8 VVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFS 45 (123)
Q Consensus 8 VVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~ 45 (123)
++|+|++....--.+.+++++|+.. ++...+-+|-..
T Consensus 199 ~~i~~~nD~~A~g~~~al~~~g~~v-~di~vvG~D~~~ 235 (306)
T 8abp_A 199 WLIVGMNDSTVLGGVRATEGQGFKA-ADIIGIGINGVD 235 (306)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCG-GGEEEEEESSGG
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCCC-CceEEEEeCcHH
Confidence 3588888888888999999999743 777777777544
Done!